ID code: 1A02, PDT050 *********************************** ************** ****** CURVES 5.3 R.L. 1998 ***** * 18 May 24 * *********************************** ************** FILE : duplex.pdb lis : dna : axin : axout: daf : pdb : acc : 0.000 wid : 0.750 maxn : 500 ior : 0 ibond: 0 splin: 3 break: -1 NLEVE: 0 NBAC : 7 ends : F supp : T COMB : T dinu : F mini : T rest : F LINE : F zaxe : F FIT : T test : F GRV : F old : T axonl: F Least squares fitting of standard bases ... Str Pos Base Rms (ang) 1 : 1) GA *** 0.040 1 : 2) GA *** 0.028 1 : 3) AA *** 0.023 1 : 4) AA *** 0.037 1 : 5) AA *** 0.017 1 : 6) AA *** 0.034 1 : 7) TA *** 0.025 1 : 8) TA *** 0.021 1 : 9) TA *** 0.023 1 : 10) GA *** 0.019 1 : 11) TA *** 0.019 1 : 12) TA *** 0.019 1 : 13) TA *** 0.030 1 : 14) CA *** 0.019 1 : 15) AA *** 0.016 1 : 16) TA *** 0.022 1 : 17) AA *** 0.029 1 : 18) GA *** 0.016 2 : 1) CB *** 0.023 2 : 2) CB *** 0.027 2 : 3) TB *** 0.017 2 : 4) TB *** 0.019 2 : 5) TB *** 0.029 2 : 6) TB *** 0.020 2 : 7) AB *** 0.024 2 : 8) AB *** 0.019 2 : 9) AB *** 0.023 2 : 10) CB *** 0.026 2 : 11) AB *** 0.014 2 : 12) AB *** 0.027 2 : 13) AB *** 0.025 2 : 14) GB *** 0.026 2 : 15) TB *** 0.021 2 : 16) AB *** 0.018 2 : 17) TB *** 0.021 2 : 18) CB *** 0.023 Strand= 2 Nucleo= 36 Atoms = 732 Units = 36 Input 1) Xdisp= 0.00 Ydisp= 0.00 Inclin= 0.00 Tip= 0.00 Combined strands have 18 levels ... Strand 1 has 18 bases (5'-3'): GGAAAATTTGTTTCATAG Strand 2 has 18 bases (3'-5'): CCTTTTAAACAAAGTATC FIRST SUM= 46.773 CPTS: 2.644 2.897 4.495 36.737 MINIMISATION: ACC = 0.100E-05 MAXN= 500 NVAR= 72 STEP 1 SUM= 46.773 DEL= 0.000E+00 STEP 2 SUM= 32.143 DEL= -0.146E+02 STEP 3 SUM= 37.966 DEL= 0.582E+01 STEP 4 SUM= 26.041 DEL= -0.119E+02 STEP 5 SUM= 20.862 DEL= -0.518E+01 STEP 6 SUM= 21.563 DEL= 0.701E+00 STEP 7 SUM= 18.436 DEL= -0.313E+01 STEP 8 SUM= 18.461 DEL= 0.247E-01 STEP 9 SUM= 17.230 DEL= -0.123E+01 STEP 10 SUM= 16.884 DEL= -0.346E+00 STEP 11 SUM= 16.361 DEL= -0.522E+00 STEP 12 SUM= 15.735 DEL= -0.626E+00 STEP 13 SUM= 15.269 DEL= -0.466E+00 STEP 14 SUM= 14.841 DEL= -0.428E+00 STEP 15 SUM= 14.352 DEL= -0.489E+00 STEP 16 SUM= 13.883 DEL= -0.469E+00 STEP 17 SUM= 13.478 DEL= -0.405E+00 STEP 18 SUM= 13.324 DEL= -0.154E+00 STEP 19 SUM= 13.117 DEL= -0.208E+00 STEP 20 SUM= 12.825 DEL= -0.291E+00 STEP 21 SUM= 12.475 DEL= -0.351E+00 STEP 22 SUM= 12.142 DEL= -0.333E+00 STEP 23 SUM= 15.421 DEL= 0.328E+01 STEP 24 SUM= 12.115 DEL= -0.331E+01 STEP 25 SUM= 12.063 DEL= -0.525E-01 STEP 26 SUM= 11.735 DEL= -0.328E+00 STEP 27 SUM= 13.255 DEL= 0.152E+01 STEP 28 SUM= 11.671 DEL= -0.158E+01 STEP 29 SUM= 11.668 DEL= -0.326E-02 STEP 30 SUM= 11.639 DEL= -0.293E-01 STEP 31 SUM= 11.584 DEL= -0.551E-01 STEP 32 SUM= 11.506 DEL= -0.777E-01 STEP 33 SUM= 11.537 DEL= 0.316E-01 STEP 34 SUM= 11.474 DEL= -0.639E-01 STEP 35 SUM= 11.456 DEL= -0.175E-01 STEP 36 SUM= 11.429 DEL= -0.270E-01 STEP 37 SUM= 11.392 DEL= -0.368E-01 STEP 38 SUM= 11.342 DEL= -0.507E-01 STEP 39 SUM= 11.335 DEL= -0.701E-02 STEP 40 SUM= 11.314 DEL= -0.202E-01 STEP 41 SUM= 11.288 DEL= -0.266E-01 STEP 42 SUM= 11.276 DEL= -0.121E-01 STEP 43 SUM= 11.261 DEL= -0.150E-01 STEP 44 SUM= 11.247 DEL= -0.140E-01 STEP 45 SUM= 11.230 DEL= -0.170E-01 STEP 46 SUM= 11.220 DEL= -0.944E-02 STEP 47 SUM= 11.205 DEL= -0.147E-01 STEP 48 SUM= 11.186 DEL= -0.195E-01 STEP 49 SUM= 11.162 DEL= -0.237E-01 STEP 50 SUM= 11.150 DEL= -0.120E-01 STEP 51 SUM= 11.141 DEL= -0.930E-02 STEP 52 SUM= 11.141 DEL= -0.414E-03 STEP 53 SUM= 11.137 DEL= -0.343E-02 STEP 54 SUM= 11.137 DEL= -0.569E-03 STEP 55 SUM= 11.136 DEL= -0.926E-03 STEP 56 SUM= 11.135 DEL= -0.999E-03 STEP 57 SUM= 11.135 DEL= -0.499E-05 STEP 58 SUM= 11.134 DEL= -0.455E-03 STEP 59 SUM= 11.134 DEL= -0.108E-03 STEP 60 SUM= 11.134 DEL= -0.181E-03 STEP 61 SUM= 11.134 DEL= -0.218E-03 STEP 62 SUM= 11.134 DEL= -0.228E-05 STEP 63 SUM= 11.134 DEL= -0.706E-04 STEP 64 SUM= 11.134 DEL= 0.271E-05 STEP 65 SUM= 11.134 DEL= -0.185E-04 STEP 66 SUM= 11.134 DEL= -0.120E-05 STEP 67 SUM= 11.134 DEL= -0.179E-05 STEP 68 SUM= 11.134 DEL= -0.973E-07 STEP 69 SUM= 11.134 DEL= -0.734E-06 STEP 70 SUM= 11.134 DEL= -0.121E-06 STEP 71 SUM= 11.134 DEL= -0.174E-06 STEP 72 SUM= 11.134 DEL= -0.368E-07 STEP 73 SUM= 11.134 DEL= -0.627E-07 STEP 74 SUM= 11.134 DEL= -0.611E-07 STEP 75 SUM= 11.134 DEL= -0.639E-09 STEP 76 SUM= 11.134 DEL= -0.142E-07 STEP 77 SUM= 11.134 DEL= -0.235E-07 STEP 78 SUM= 11.134 DEL= -0.121E-07 STEP 79 SUM= 11.134 DEL= 0.128E-08 STEP 80 SUM= 11.134 DEL= -0.703E-08 STEP 81 SUM= 11.134 DEL= 0.318E-09 STEP 82 SUM= 11.134 DEL= -0.166E-08 STEP 83 SUM= 11.134 DEL= -0.318E-09 STEP 84 SUM= 11.134 DEL= -0.461E-09 STEP 85 SUM= 11.134 DEL= -0.425E-09 STEP 86 SUM= 11.134 DEL= -0.935E-10 STEP 87 SUM= 11.134 DEL= -0.115E-09 STEP 88 SUM= 11.134 DEL= 0.169E-11 STEP 89 SUM= 11.134 DEL= -0.320E-10 STEP 90 SUM= 11.134 DEL= -0.127E-11 STEP 91 SUM= 11.134 DEL= -0.497E-11 STEP 92 SUM= 11.134 DEL= 0.146E-11 STEP 93 SUM= 11.134 DEL= -0.278E-11 STEP 94 SUM= 11.134 DEL= -0.107E-13 STEP 95 SUM= 11.134 DEL= -0.176E-12 STEP 96 SUM= 11.134 DEL= -0.178E-14 STEP 97 SUM= 11.134 DEL= -0.444E-13 STEP 98 SUM= 11.134 DEL= 0.000E+00 FINAL SUM= 11.134 CPTS: 2.258 4.577 0.695 3.604 GRA=-0.15E-09-0.68E-08 0.11E-08 0.21E-08-0.31E-08-0.51E-08 0.43E-08 0.21E-08 GRA= 0.31E-08-0.70E-08 0.19E-08-0.11E-07-0.72E-08-0.72E-08 0.60E-08 0.41E-08 GRA=-0.81E-08-0.17E-08-0.26E-08 0.47E-08-0.16E-08 0.92E-09-0.91E-08 0.31E-08 GRA=-0.40E-08-0.39E-08 0.29E-08-0.24E-08-0.62E-08 0.44E-08-0.77E-08-0.26E-08 GRA= 0.34E-09 0.74E-08 0.20E-08 0.15E-08-0.24E-08 0.50E-08 0.22E-08 0.59E-08 GRA= 0.37E-09 0.78E-08-0.63E-08 0.12E-07 0.57E-08-0.16E-08-0.50E-08-0.77E-08 GRA= 0.71E-08 0.68E-08 0.74E-09-0.15E-08 0.41E-08 0.84E-08 0.58E-08 0.94E-08 GRA= 0.46E-08-0.27E-09-0.13E-08-0.13E-08 0.62E-08-0.14E-08 0.23E-08 0.23E-08 GRA= 0.11E-07-0.49E-08-0.28E-08-0.59E-08 0.13E-08 0.72E-10 0.51E-08-0.25E-08 ---------------------------- |A| Global axis parameters | ---------------------------- 1) U: 0.998 0.022 -0.055 P: 10.237 35.835 42.880 D: 0.307 2) U: 1.000 0.017 -0.015 P: 13.585 36.063 42.761 D: 0.697 3) U: 1.000 0.018 -0.002 P: 16.838 36.244 42.915 D: 1.730 4) U: 0.996 0.041 -0.077 P: 20.004 36.392 42.222 D: 0.221 5) U: 0.997 0.004 -0.083 P: 23.188 36.263 41.919 D: 0.136 6) U: 0.998 0.005 -0.065 P: 26.551 36.180 41.664 D: 0.274 7) U: 0.996 0.016 -0.092 P: 29.575 36.040 41.339 D: 0.169 8) U: 0.995 0.051 -0.091 P: 32.926 36.030 41.090 D: 0.362 9) U: 0.996 0.039 -0.077 P: 36.269 36.404 40.743 D: 0.742 10) U: 0.998 0.048 -0.050 P: 39.723 36.365 40.431 D: 0.623 11) U: 0.999 0.030 -0.011 P: 42.730 36.521 40.185 D: 0.386 12) U: 0.995 0.057 0.086 P: 45.819 36.457 40.309 D: 0.310 13) U: 0.991 0.067 0.113 P: 48.872 36.746 40.846 D: 0.619 14) U: 0.988 0.036 0.153 P: 51.991 37.207 41.288 D: 0.743 15) U: 0.982 0.021 0.186 P: 55.332 37.118 41.569 D: 1.476 16) U: 0.990 0.015 0.140 P: 58.346 36.717 42.401 D: 1.526 17) U: 0.986 0.045 0.158 P: 61.487 37.211 43.342 D: 0.812 18) U: 0.992 0.043 0.118 P: 65.032 37.537 43.453 --------------------------------- |B| Global Base-Axis Parameters | --------------------------------- 1st strand Xdisp Ydisp Inclin Tip Bc Tc (dx) (dy) (eta) (theta) 1) GA *** -0.86 -0.05 -6.98 1.19 1 0 2) GA *** -0.96 -0.18 -3.98 2.31 1 2 3) AA *** -0.43 -0.28 3.68 2.80 2 18 4) AA *** -0.93 0.14 3.10 -7.54 2 20 5) AA *** -0.81 0.04 -1.38 -9.77 2 20 6) AA *** -0.86 -0.08 -3.36 -8.52 2 24 7) TA *** -0.87 -0.19 -0.77 -7.58 4 -24 8) TA *** -1.11 -0.27 -1.91 -5.26 4 -20 9) TA *** -0.94 -0.01 -3.11 -5.53 4 -26 10) GA *** -1.01 0.07 -5.82 1.73 1 16 11) TA *** -1.26 -0.21 1.76 -2.51 4 -23 12) TA *** -1.33 -0.02 3.63 -3.83 4 -20 13) TA *** -1.09 -0.31 4.31 -3.97 4 -18 14) CA *** -1.50 -0.50 7.30 -3.48 3 -12 15) AA *** -0.96 -0.27 8.27 -4.41 2 30 16) TA *** -0.66 -0.78 8.50 0.48 4 -32 17) AA *** -1.23 -0.63 12.12 -4.85 2 27 18) GA *** -0.72 -0.61 11.34 -7.90 1 0 2nd strand Xdisp Ydisp Inclin Tip Bc Tc (dx) (dy) (eta) (theta) 1) CB *** -0.87 0.03 -1.81 1.01 3 0 2) CB *** -0.62 0.18 -4.56 -2.82 3 -2 3) TB *** -0.62 0.26 -5.78 -8.04 4 -18 4) TB *** -0.78 -0.01 -3.10 -7.36 4 -20 5) TB *** -0.84 0.05 -2.52 -6.92 4 -20 6) TB *** -0.99 0.07 -2.30 -3.39 4 -24 7) AB *** -0.95 0.12 -6.50 -7.33 2 24 8) AB *** -0.98 0.13 -4.19 -7.73 2 20 9) AB *** -0.79 0.07 -0.13 -7.63 2 26 10) CB *** -1.17 0.09 6.49 -3.12 3 -16 11) AB *** -1.06 0.18 3.14 -4.68 2 23 12) AB *** -1.15 0.17 5.08 -7.56 2 20 13) AB *** -1.10 0.26 4.70 -5.88 2 18 14) GB *** -0.97 0.55 7.54 -6.53 1 12 15) TB *** -1.12 0.26 8.16 -3.36 4 -30 16) AB *** -0.90 0.61 4.85 -6.18 2 32 17) TB *** -1.24 0.59 9.54 -2.86 4 -27 18) CB *** -0.94 0.75 11.23 -1.71 3 0 -------------------------------------- |C| Global Base pair-Axis Parameters | -------------------------------------- Strand 1 with strand 2 ... Duplex Xdisp Ydisp Inclin Tip Bc Tc (dx) (dy) (eta) (theta) 1) G***-C*** -0.87 -0.04 -4.39 0.09 1 0 2) G***-C*** -0.79 -0.18 -4.27 2.57 1 2 3) A***-T*** -0.52 -0.27 -1.05 5.42 2 18 4) A***-T*** -0.86 0.08 0.00 -0.09 2 20 5) A***-T*** -0.83 -0.00 -1.95 -1.42 2 20 6) A***-T*** -0.93 -0.07 -2.83 -2.57 2 24 7) T***-A*** -0.91 -0.15 -3.64 -0.12 4 -24 8) T***-A*** -1.04 -0.20 -3.05 1.23 4 -20 9) T***-A*** -0.86 -0.04 -1.62 1.05 4 -26 10) G***-C*** -1.09 -0.01 0.34 2.42 1 16 11) T***-A*** -1.16 -0.19 2.45 1.08 4 -23 12) T***-A*** -1.24 -0.09 4.36 1.87 4 -20 13) T***-A*** -1.09 -0.29 4.50 0.95 4 -18 14) C***-G*** -1.24 -0.52 7.42 1.53 3 -12 15) A***-T*** -1.04 -0.26 8.22 -0.53 2 30 16) T***-A*** -0.78 -0.70 6.67 3.33 4 -32 17) A***-T*** -1.23 -0.61 10.83 -1.00 2 27 18) G***-C*** -0.83 -0.68 11.29 -3.10 1 0 Average: -0.96 -0.24 1.85 0.71 --------------------------------- |D| Global Base-Base Parameters | --------------------------------- Strand 1 with strand 2 ... Duplex Shear Stretch Stagger Buckle Propel Opening Bc Tc (Sx) (Sy) (Sz) (kappa) (omega) (sigma) 1) G***-C*** 0.01 -0.01 -0.36 -5.17 2.20 -2.24 1 0 2) G***-C*** -0.34 -0.00 -0.29 0.58 -0.51 0.47 1 2 3) A***-T*** 0.19 -0.02 -0.57 9.46 -5.24 2.42 2 18 4) A***-T*** -0.15 0.13 -0.50 6.20 -14.90 -3.81 2 20 5) A***-T*** 0.03 0.09 -0.45 1.15 -16.68 2.08 2 20 6) A***-T*** 0.14 -0.01 -0.58 -1.05 -11.91 -0.38 2 24 7) T***-A*** 0.08 -0.06 -0.38 5.74 -14.92 5.98 4 -24 8) T***-A*** -0.13 -0.14 -0.21 2.27 -12.99 0.07 4 -20 9) T***-A*** -0.14 0.06 0.14 -2.98 -13.17 2.03 4 -26 10) G***-C*** 0.16 0.16 -0.11 -12.32 -1.39 -3.64 1 16 11) T***-A*** -0.21 -0.03 0.22 -1.38 -7.19 1.42 4 -23 12) T***-A*** -0.18 0.15 0.04 -1.45 -11.39 2.38 4 -20 13) T***-A*** 0.01 -0.05 0.06 -0.39 -9.85 -3.35 4 -18 14) C***-G*** -0.53 0.05 -0.21 -0.24 -10.01 -5.27 3 -12 15) A***-T*** 0.16 -0.01 -0.19 0.11 -7.77 -1.65 2 30 16) T***-A*** 0.24 -0.17 0.35 3.65 -5.70 0.40 4 -32 17) A***-T*** 0.01 -0.04 -0.04 2.58 -7.71 -6.34 2 27 18) G***-C*** 0.22 0.13 -0.08 0.11 -9.61 2.63 1 0 Average: -0.02 0.01 -0.18 0.38 -8.82 -0.38 ---------------------------------- |E| Global Inter-Base Parameters | ---------------------------------- 1st strand Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) G***/G*** -0.06 -0.29 3.39 2.15 3.22 28.69 1 3) G***/A*** 0.68 -0.27 3.11 7.94 1.22 32.59 2 4) A***/A*** -0.89 0.84 3.23 -3.22 -14.00 40.90 4 5) A***/A*** 0.32 -0.06 3.22 -4.66 -0.10 41.22 4 6) A***/A*** 0.04 -0.18 3.31 -1.28 0.51 36.43 4 7) A***/T*** 0.11 -0.26 3.14 1.62 2.28 35.08 7 8) T***/T*** -0.34 -0.17 3.44 -3.01 3.01 33.37 -4 9) T***/T*** 0.39 0.32 3.55 -1.51 -1.29 37.70 -4 10) T***/G*** -0.27 0.01 3.34 -4.19 7.95 40.15 -9 11) G***/T*** -0.33 -0.42 3.18 5.22 -3.46 28.76 6 12) T***/T*** -0.12 0.38 3.00 1.62 4.42 34.50 -4 13) T***/T*** 0.43 -0.46 3.12 1.74 1.17 36.51 -4 14) T***/C*** -0.64 -0.38 3.04 3.74 3.28 29.39 -2 15) C***/A*** 0.72 0.52 3.35 2.94 -0.09 41.89 9 16) A***/T*** 0.51 -1.04 3.37 -1.89 6.65 26.70 7 17) T***/A*** -1.15 0.32 3.07 2.51 -7.03 37.36 10 18) A***/G*** 0.93 0.08 3.52 -0.07 -0.83 43.88 3 2nd strand Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) C***/C*** 0.29 0.31 3.32 -3.60 -5.93 25.98 -1 3) C***/T*** 0.14 0.25 3.40 -0.95 -5.95 30.63 -2 4) T***/T*** -0.55 -0.69 3.16 0.04 4.33 47.13 -4 5) T***/T*** 0.14 0.03 3.17 0.39 -1.68 35.33 -4 6) T***/T*** -0.08 0.09 3.44 0.92 4.26 38.89 -4 7) T***/A*** 0.17 0.20 2.94 -5.16 -5.29 28.72 7 8) A***/A*** -0.13 0.10 3.27 0.45 -1.08 39.29 4 9) A***/A*** 0.41 -0.12 3.20 3.74 1.11 35.74 4 10) A***/C*** -0.58 0.09 3.59 5.15 3.83 45.81 9 11) C***/A*** 0.04 0.22 2.85 -5.72 -2.34 23.69 -6 12) A***/A*** -0.14 -0.20 3.18 1.69 -8.62 33.55 4 13) A***/A*** 0.24 0.26 3.09 0.68 0.37 42.23 4 14) A***/G*** -0.10 0.48 3.31 3.60 -3.44 31.31 2 15) G***/T*** 0.03 -0.58 3.33 2.59 2.33 38.27 -9 16) T***/A*** 0.43 0.88 2.83 -5.43 -4.59 24.65 7 17) A***/T*** -0.93 -0.19 3.45 3.58 5.02 44.11 10 18) T***/C*** 0.71 0.10 3.56 2.40 -1.07 34.91 -3 --------------------------------------- |F| Global Inter-Base pair Parameters | --------------------------------------- Strand 1 with strand 2 ... Duplex Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) G***/G*** 0.12 -0.30 3.35 -0.72 4.58 27.34 1 3) G***/A*** 0.41 -0.26 3.25 3.49 3.59 31.61 2 4) A***/A*** -0.72 0.77 3.20 -1.59 -9.16 44.02 4 5) A***/A*** 0.23 -0.05 3.19 -2.13 0.79 38.28 4 6) A***/A*** -0.02 -0.13 3.37 -0.18 -1.87 37.66 4 7) A***/T*** 0.14 -0.23 3.04 -1.77 3.79 31.90 7 8) T***/T*** -0.23 -0.14 3.36 -1.28 2.05 36.33 -4 9) T***/T*** 0.40 0.22 3.37 1.12 -1.20 36.72 -4 10) T***/G*** -0.42 -0.04 3.46 0.48 2.06 42.98 -9 11) G***/T*** -0.15 -0.32 3.02 -0.25 -0.56 26.23 6 12) T***/T*** -0.13 0.29 3.09 1.66 6.52 34.02 -4 13) T***/T*** 0.33 -0.36 3.10 1.21 0.40 39.37 -4 14) T***/C*** -0.37 -0.43 3.17 3.67 3.36 30.35 -2 15) C***/A*** 0.37 0.55 3.34 2.76 -1.21 40.08 9 16) A***/T*** 0.47 -0.96 3.10 -3.66 5.62 25.67 7 17) T***/A*** -1.04 0.26 3.26 3.04 -6.02 40.73 10 18) A***/G*** 0.82 -0.01 3.54 1.17 0.12 39.40 3 Average: 0.01 -0.07 3.25 0.41 0.75 35.45 --------------------------------- |G| Local Inter-Base Parameters | --------------------------------- 1st strand Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) G***/G*** -0.12 -1.07 3.34 1.17 0.46 28.81 1 3) G***/A*** 0.58 -0.66 3.16 6.19 1.11 32.97 2 4) A***/A*** -0.67 0.60 3.19 -1.51 -10.97 41.33 4 5) A***/A*** 0.74 -0.60 3.19 1.72 0.65 41.40 4 6) A***/A*** 0.56 -0.84 3.22 4.51 -1.03 36.12 4 7) A***/T*** 0.58 -0.89 3.08 6.37 1.01 34.58 7 8) T***/T*** 0.18 -0.84 3.44 0.76 2.19 33.51 -4 9) T***/T*** 0.80 -0.50 3.46 2.03 -2.89 37.61 -4 10) T***/G*** -0.15 -0.97 3.28 -2.73 4.43 40.23 -9 11) G***/T*** -0.32 -1.05 3.18 5.18 -4.35 28.78 6 12) T***/T*** 0.11 -0.24 3.14 3.50 6.07 34.05 -4 13) T***/T*** 0.72 -0.99 3.18 4.13 3.66 36.15 -4 14) T***/C*** -0.24 -0.73 3.20 5.41 6.20 28.71 -2 15) C***/A*** 1.15 0.07 3.32 5.64 5.57 41.13 9 16) A***/T*** 0.87 -0.93 3.55 -1.02 10.36 26.30 7 17) T***/A*** -0.60 0.26 3.08 3.75 -0.18 36.96 10 18) A***/G*** 1.72 0.08 3.45 4.58 8.06 42.30 3 2nd strand Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) C***/C*** 0.31 -0.84 3.30 -3.93 4.40 26.03 -1 3) C***/T*** -0.03 -0.90 3.34 -3.77 3.04 30.37 -2 4) T***/T*** -0.86 -0.09 3.05 -6.31 -7.78 46.35 -4 5) T***/T*** -0.22 -0.66 3.17 -3.95 -0.01 35.18 -4 6) T***/T*** -0.32 -0.80 3.39 -2.52 -5.66 38.80 -4 7) T***/A*** -0.01 -0.92 2.91 -7.71 2.95 28.19 7 8) A***/A*** -0.46 -1.03 3.18 -4.74 -2.58 38.90 4 9) A***/A*** 0.02 -0.53 3.20 -1.17 -2.43 35.85 4 10) A***/C*** -0.88 -0.61 3.58 0.44 -0.98 45.95 9 11) C***/A*** -0.09 -0.45 2.93 -7.22 4.29 23.15 -6 12) A***/A*** -0.40 -0.24 3.30 -1.98 10.85 33.12 4 13) A***/A*** 0.04 -0.79 3.22 -4.09 3.25 41.78 4 14) A***/G*** -0.28 -0.67 3.43 0.28 6.66 31.09 2 15) G***/T*** 0.04 0.33 3.33 -0.63 2.91 37.88 -9 16) T***/A*** 0.38 -0.99 3.05 -7.36 7.28 23.83 7 17) A***/T*** -0.75 -0.16 3.43 -0.20 0.65 44.09 10 18) T***/C*** 0.94 -0.11 3.71 1.03 7.28 34.04 -3 -------------------------------------- |H| Local Inter-Base pair Parameters | -------------------------------------- Strand 1 with strand 2 ... Duplex Shift Slide Rise Tilt Roll Twist Dc (Dx) (Dy) (Dz) (tau) (rho) (Omega) 2) G***/G*** 0.09 -0.95 3.32 -1.39 2.41 27.45 1 3) G***/A*** 0.28 -0.77 3.26 1.23 2.16 31.58 2 4) A***/A*** -0.77 0.25 3.13 -3.93 -9.44 43.78 4 5) A***/A*** 0.26 -0.64 3.21 -1.12 0.29 38.65 4 6) A***/A*** 0.13 -0.81 3.33 0.99 -3.32 37.74 4 7) A***/T*** 0.28 -0.90 3.01 -0.65 2.16 31.52 7 8) T***/T*** -0.15 -0.93 3.33 -2.07 -0.13 36.53 -4 9) T***/T*** 0.39 -0.51 3.35 0.43 -2.65 36.98 -4 10) T***/G*** -0.51 -0.81 3.45 -1.12 1.75 42.88 -9 11) G***/T*** -0.21 -0.74 3.05 -1.07 -0.10 26.14 6 12) T***/T*** -0.14 -0.24 3.23 0.81 8.51 33.71 -4 13) T***/T*** 0.38 -0.90 3.21 0.02 3.44 39.11 -4 14) T***/C*** -0.25 -0.70 3.30 2.85 6.33 30.01 -2 15) C***/A*** 0.59 0.19 3.36 2.55 4.15 39.63 9 16) A***/T*** 0.61 -0.96 3.31 -4.20 8.80 25.12 7 17) T***/A*** -0.66 0.05 3.26 1.77 0.19 40.57 10 18) A***/G*** 1.34 -0.02 3.60 2.82 7.64 38.29 3 Average: 0.10 -0.55 3.28 -0.12 1.89 35.28 --------------------------- |I| Global Axis Curvature | --------------------------- Duplex Ax Ay Ainc Atip Adis Angle Path Dc 2) G***/G*** 0.04 -0.16 -0.85 2.10 0.16 2.26 3.36 1 3) G***/A*** 0.14 -0.17 0.27 0.73 0.22 0.78 3.26 2 4) A***/A*** -0.39 0.42 -2.64 -3.65 0.57 4.50 3.24 4 5) A***/A*** 0.20 0.03 -0.18 2.12 0.21 2.13 3.20 4 6) A***/A*** 0.08 -0.06 0.70 -0.73 0.10 1.01 3.37 4 7) A***/T*** 0.12 -0.15 -0.96 1.34 0.19 1.65 3.04 7 8) T***/T*** -0.10 -0.09 -1.87 0.69 0.14 1.99 3.36 -4 9) T***/T*** 0.22 0.07 -0.31 -1.02 0.23 1.07 3.38 -4 10) T***/G*** -0.20 -0.07 -1.47 0.69 0.21 1.63 3.47 -9 11) G***/T*** -0.07 -0.14 -2.36 0.78 0.16 2.49 3.02 6 12) T***/T*** -0.05 0.19 -0.25 5.73 0.20 5.74 3.09 -4 13) T***/T*** 0.19 -0.17 1.07 1.31 0.25 1.69 3.11 -4 14) T***/C*** -0.23 -0.19 0.76 2.78 0.30 2.88 3.18 -2 15) C***/A*** 0.18 0.29 1.96 0.85 0.34 2.13 3.35 9 16) A***/T*** 0.21 -0.52 -2.11 1.76 0.56 2.75 3.15 7 17) T***/A*** -0.59 0.17 -1.11 -1.69 0.61 2.03 3.32 10 18) A***/G*** 0.41 0.06 0.71 2.22 0.42 2.34 3.56 3 Overall axis bend ... UU= 9.96 PP= 4.06 Duplex Offset L.Dir ... wrt end-to-end vector 1) G*** 0.00 0.00 2) G*** 0.20 39.41 3) A*** 0.21 48.45 4) A*** 0.80 -54.54 5) A*** 1.10 -112.81 6) A*** 1.40 -157.21 7) T*** 1.79 161.58 8) T*** 2.09 126.89 9) T*** 2.42 97.56 10) G*** 2.78 55.10 11) T*** 3.05 28.20 12) T*** 2.98 -9.59 13) T*** 2.46 -43.57 14) C*** 2.03 -64.19 15) A*** 1.79 -111.87 16) T*** 1.16 -166.64 17) A*** 0.23 116.97 18) G*** 0.00 0.00 Path length= 55.49 End-to-end= 54.82 Shortening= 1.20 % ------------------------- |J| Backbone Parameters | ------------------------- 1st strand C1'-C2' C2'-C3' Phase Ampli Pucker C1' C2' C3' 1)GA *** 31.89 -33.91 169.24 35.12 C2'-endo 105.7 102.4 102.9 2)GA *** 33.85 -37.55 173.01 38.54 C2'-endo 106.2 101.1 102.8 3)AA *** 35.82 -39.16 173.09 40.57 C2'-endo 106.9 100.1 102.2 4)AA *** 31.94 -37.23 176.58 37.82 C2'-endo 105.9 101.5 103.3 5)AA *** 31.19 -36.36 176.91 36.95 C2'-endo 105.9 102.0 103.0 6)AA *** 31.63 -34.80 172.60 35.82 C2'-endo 106.6 101.6 103.3 7)TA *** 27.27 -33.53 182.99 34.45 C3'-exo 107.3 102.4 102.3 8)TA *** 26.93 -33.93 184.63 34.84 C3'-exo 106.9 102.6 102.2 9)TA *** 35.17 -38.70 173.02 39.98 C2'-endo 107.3 99.8 103.1 10)GA *** 28.01 -34.71 181.71 35.22 C3'-exo 106.4 102.0 103.7 11)TA *** 33.43 -36.99 173.64 38.17 C2'-endo 107.5 100.5 103.2 12)TA *** 34.73 -36.84 170.23 38.37 C2'-endo 106.8 100.8 102.6 13)TA *** 26.39 -32.10 181.23 32.67 C3'-exo 105.8 104.0 102.4 14)CA *** 26.84 -34.30 184.00 34.77 C3'-exo 105.8 102.8 103.4 15)AA *** 28.33 -35.32 182.75 35.95 C3'-exo 106.1 102.3 102.9 16)TA *** 37.30 -39.63 170.16 41.37 C2'-endo 107.4 98.9 103.3 17)AA *** 34.57 -38.29 171.76 39.21 C2'-endo 105.9 100.6 103.8 18)GA *** 35.76 -39.88 173.88 41.09 C2'-endo 107.0 99.4 102.9 Torsions Chi Gamma Delta Epsil Zeta Alpha Beta C1'-N C5'-C4' C4'-C3' C3'-O3' O3'-P P-O5' O5'-C5' 1)GA *** -99.90 27.13 142.02 -177.00 -116.87 -12.91 174.59 2)GA *** -99.17 9.82 150.23 -163.05 -116.13 -35.89 176.51 3)AA *** -83.28 15.20 155.86 -115.54 167.77 -74.47 144.03 4)AA *** -108.49 52.24 148.66 176.65 -96.96 -64.01 -166.70 5)AA *** -94.24 41.87 147.86 165.72 -101.43 -51.66 -165.83 6)AA *** -94.37 43.41 143.70 -177.15 -118.70 25.74 -169.68 7)TA *** -100.69 -39.66 155.65 -166.23 -118.70 45.26 -165.46 8)TA *** -113.22 -77.82 157.66 -179.15 -90.82 -62.50 -177.49 9)TA *** -97.92 46.83 149.66 177.27 -121.97 -56.94 -172.09 10)GA *** -106.07 46.70 147.90 175.31 -97.58 -55.34 -162.04 11)TA *** -90.75 34.58 150.42 -163.15 -130.73 -50.89 164.72 12)TA *** -96.07 43.49 144.09 -151.12 -119.10 25.81 -143.85 13)TA *** -116.34 -78.05 147.12 -164.08 -111.01 21.67 179.96 14)CA *** -100.95 -41.63 154.58 167.44 -83.99 -65.63 -154.11 15)AA *** -82.99 41.20 148.09 162.49 -120.02 42.70 144.79 16)TA *** -81.07 -30.31 159.88 -136.33 -163.12 -86.23 139.31 17)AA *** -108.49 74.01 145.25 -163.55 -97.60 -56.77 178.09 18)GA *** -80.15 37.25 157.08 ...... ...... ...... ...... 2nd strand C1'-C2' C2'-C3' Phase Ampli Pucker C1' C2' C3' 1)CB *** 35.42 -39.49 174.66 40.79 C2'-endo 107.1 99.8 102.4 2)CB *** 28.96 -34.44 179.41 35.17 C2'-endo 107.5 101.7 103.4 3)TB *** 31.13 -35.90 176.43 36.63 C2'-endo 106.2 101.9 102.9 4)TB *** 34.72 -38.30 172.83 39.52 C2'-endo 107.5 99.5 103.7 5)TB *** 32.30 -37.89 177.50 38.63 C2'-endo 106.5 100.6 103.4 6)TB *** 32.07 -38.44 179.95 39.29 C2'-endo 107.0 100.5 102.5 7)AB *** 29.44 -35.71 180.41 36.26 C3'-exo 105.8 102.4 102.6 8)AB *** 34.24 -36.69 170.27 38.02 C2'-endo 106.6 100.9 103.3 9)AB *** 35.43 -37.34 168.61 38.89 C2'-endo 106.2 100.6 103.4 10)CB *** 41.13 -41.38 166.71 44.18 C2'-endo 108.1 97.3 103.0 11)AB *** 30.29 -36.05 178.80 36.67 C2'-endo 106.2 101.9 103.0 12)AB *** 29.35 -34.13 176.50 34.62 C2'-endo 105.6 103.1 103.1 13)AB *** 38.30 -39.73 167.64 41.66 C2'-endo 106.7 99.5 102.9 14)GB *** 35.18 -37.27 168.12 38.68 C2'-endo 105.8 100.7 103.7 15)TB *** 35.71 -39.71 173.66 40.87 C2'-endo 106.6 99.9 102.8 16)AB *** 31.08 -37.34 179.94 38.04 C2'-endo 106.4 101.5 102.6 17)TB *** 34.53 -38.36 173.48 39.47 C2'-endo 106.9 100.2 103.1 18)CB *** 38.81 -38.33 164.23 41.09 C2'-endo 107.1 99.3 103.1 Torsions Chi Gamma Delta Epsil Zeta Alpha Beta C1'-N C5'-C4' C4'-C3' C3'-O3' O3'-P P-O5' O5'-C5' 1)CB *** -89.31 27.66 162.41 ...... ...... ...... ...... 2)CB *** -97.43 -38.61 154.94 -179.26 -108.12 -42.62 -173.21 3)TB *** -98.95 46.16 145.51 -168.53 -118.42 14.46 -175.06 4)TB *** -91.41 45.01 150.27 -173.62 -141.64 -37.03 161.30 5)TB *** -99.83 52.70 150.04 -174.32 -108.78 -63.57 -177.38 6)TB *** -86.06 10.69 152.35 165.74 -120.11 -41.46 179.46 7)AB *** -97.81 29.97 147.94 -178.20 -99.95 -36.65 -164.27 8)AB *** -105.52 36.83 143.60 178.00 -105.46 -40.15 -167.49 9)AB *** -101.76 35.13 148.16 -164.18 -137.64 -36.07 159.48 10)CB *** -82.99 42.02 156.03 -143.68 -167.62 -44.23 155.49 11)AB *** -92.84 28.70 149.31 -170.13 -109.84 -52.12 166.32 12)AB *** -94.67 36.89 144.82 172.26 -95.18 -41.01 -166.56 13)AB *** -96.47 36.99 147.31 -175.87 -127.94 -52.87 -167.35 14)GB *** -100.57 47.65 150.39 -164.24 -120.93 -44.58 163.74 15)TB *** -80.47 26.19 153.90 -165.19 -160.20 -41.26 146.92 16)AB *** -92.73 17.91 152.96 175.38 -100.61 -52.98 -164.64 17)TB *** -106.08 62.24 154.05 -168.82 -135.17 -14.97 162.56 18)CB *** -89.99 28.99 150.14 -159.56 -149.08 -68.39 162.97