ID code: '5X2H' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 5938 C1' G B 1 beta 5933 5939 5936 5961 C1' G B 2 beta 5956 5962 5959 5984 C1' A B 3 beta 5979 5985 5982 6006 C1' A B 4 beta 6001 6007 6004 6028 C1' A B 5 beta 6023 6029 6026 6050 C1' U B 6 beta 6045 6051 6048 6070 C1' U B 7 beta 6065 6071 6068 6090 C1' A B 8 beta 6085 6091 6088 6112 C1' G B 9 beta 6107 6113 6110 6135 C1' G B 10 beta 6130 6136 6133 6158 C1' U B 11 beta 6153 6159 6156 6178 C1' G B 12 beta 6173 6179 6176 6201 C1' C B 13 beta 6196 6202 6199 6221 C1' G B 14 beta 6216 6222 6219 6244 C1' C B 15 beta 6239 6245 6242 6264 C1' U B 16 beta 6259 6265 6262 6284 C1' U B 17 beta 6279 6285 6282 6304 C1' G B 18 beta 6299 6305 6302 6327 C1' G B 19 beta 6322 6328 6325 6350 C1' C B 20 beta 6345 6351 6348 6370 C1' G B 21 beta 6365 6371 6368 6393 C1' U B 22 beta 6388 6394 6391 6413 C1' U B 23 beta 6408 6414 6411 6433 C1' U B 24 beta 6428 6434 6431 6453 C1' U B 25 beta 6448 6454 6451 6473 C1' A B 26 beta 6468 6474 6471 6495 C1' G B 27 beta 6490 6496 6493 6518 C1' U B 28 beta 6513 6519 6516 6538 C1' C B 29 beta 6533 6539 6536 6558 C1' C B 30 beta 6553 6559 6556 6578 C1' C B 31 beta 6573 6579 6576 6598 C1' U B 32 beta 6593 6599 6596 6618 C1' G B 33 beta 6613 6619 6616 6641 C1' A B 34 beta 6636 6642 6639 6663 C1' A B 35 beta 6658 6664 6661 6685 C1' A B 36 beta 6680 6686 6683 6707 C1' A B 37 beta 6702 6708 6705 6729 C1' G B 38 beta 6724 6730 6727 6752 C1' G B 39 beta 6747 6753 6750 6775 C1' G B 40 beta 6770 6776 6773 6798 C1' A B 41 beta 6793 6799 6796 6820 C1' C B 42 beta 6815 6821 6818 6840 C1' U B 43 beta 6835 6841 6838 6860 C1' A B 44 beta 6855 6861 6858 6882 C1' A B 45 beta 6877 6883 6880 6904 C1' A B 46 beta 6899 6905 6902 6926 C1' A B 47 beta 6921 6927 6924 6948 C1' U B 48 beta 6943 6949 6946 6968 C1' A B 49 beta 6963 6969 6966 6990 C1' A B 50 beta 6985 6991 6988 7012 C1' A B 51 beta 7007 7013 7010 7034 C1' G B 52 beta 7029 7035 7032 7057 C1' A B 53 beta 7052 7058 7055 7079 C1' G B 54 beta 7074 7080 7077 7102 C1' U B 55 beta 7097 7103 7100 7122 C1' U B 56 beta 7117 7123 7120 7142 C1' U B 57 beta 7137 7143 7140 7162 C1' G B 58 beta 7157 7163 7160 7185 C1' C B 59 beta 7180 7186 7183 7205 C1' G B 60 beta 7200 7206 7203 7228 C1' G B 61 beta 7223 7229 7226 7251 C1' G B 62 beta 7246 7252 7249 7274 C1' A B 63 beta 7269 7275 7272 7296 C1' C B 64 beta 7291 7297 7294 7316 C1' U B 65 beta 7311 7317 7314 7336 C1' C B 66 beta 7331 7337 7334 7356 C1' U B 67 beta 7351 7357 7354 7376 C1' G B 68 beta 7371 7377 7374 7399 C1' C B 69 beta 7394 7400 7397 7419 C1' G B 70 beta 7414 7420 7417 7442 C1' G B 71 beta 7437 7443 7440 7465 C1' G B 72 beta 7460 7466 7463 7488 C1' G B 73 beta 7483 7489 7486 7511 C1' U B 74 beta 7506 7512 7509 7531 C1' U B 75 beta 7526 7532 7529 7551 C1' A B 76 beta 7546 7552 7549 7573 C1' C B 77 beta 7568 7574 7571 7593 C1' A B 78 beta 7588 7594 7591 7615 C1' A B 79 beta 7610 7616 7613 7637 C1' U B 80 beta 7632 7638 7635 7657 C1' C B 81 beta 7652 7658 7655 7677 C1' C B 82 beta 7672 7678 7675 7697 C1' C B 83 beta 7692 7698 7695 7717 C1' C B 84 beta 7712 7718 7715 7737 C1' U B 85 beta 7732 7738 7735 7757 C1' A B 86 beta 7752 7758 7755 7779 C1' A B 87 beta 7774 7780 7777 7801 C1' A B 88 beta 7796 7802 7799 7823 C1' A B 89 beta 7818 7824 7821 7845 C1' C B 90 beta 7840 7846 7843 7865 C1' C B 91 beta 7860 7866 7863 7885 C1' G B 92 beta 7880 7886 7883 7908 C1' C B 93 beta 7903 7909 7906 7925 C1' DC C -7 beta 7921 7926 7924 7944 C1' DT C -6 beta 7940 7945 7943 7964 C1' DG C -5 beta 7960 7965 7963 7986 C1' DT C -4 beta 7982 7987 7985 8006 C1' DT C -3 beta 8002 8007 8005 8026 C1' DT C -2 beta 8022 8027 8025 8046 C1' DC C -1 beta 8042 8047 8045 8065 C1' DT C 0 beta 8061 8066 8064 8085 C1' DG C 1 beta 8081 8086 8084 8107 C1' DC C 2 beta 8103 8108 8106 8126 C1' DC C 3 beta 8122 8127 8125 8145 C1' DA C 4 beta 8141 8146 8144 8166 C1' DA C 5 beta 8162 8167 8165 8187 C1' DG C 6 beta 8183 8188 8186 8209 C1' DC C 7 beta 8205 8210 8208 8228 C1' DG C 8 beta 8224 8229 8227 8250 C1' DC C 9 beta 8246 8251 8249 8269 C1' DA C 10 beta 8265 8270 8268 8290 C1' DC C 11 beta 8286 8291 8289 8309 C1' DC C 12 beta 8305 8310 8308 8328 C1' DT C 13 beta 8324 8329 8327 8348 C1' DA C 14 beta 8344 8349 8347 8369 C1' DA C 15 beta 8365 8370 8368 8390 C1' DT C 16 beta 8386 8391 8389 8410 C1' DT C 17 beta 8406 8411 8409 8430 C1' DT C 18 beta 8426 8431 8429 8450 C1' DC C 19 beta 8446 8451 8449 8469 C1' DC C 20 beta 8465 8470 8468 8486 C1' DA D 1 beta 8482 8487 8485 8507 C1' DG D 2 beta 8503 8508 8506 8529 C1' DA D 3 beta 8525 8530 8528 8550 C1' DA D 4 beta 8546 8551 8549 8571 C1' DA D 5 beta 8567 8572 8570 8592 C1' DC D 6 beta 8588 8593 8591 8611 C1' DA D 7 beta 8607 8612 8610 8632 C1' DG D 8 beta 8628 8633 8631 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 5936 C2' G B 1 OK 5938 5934 5937 5959 C2' G B 2 OK 5961 5957 5960 5982 C2' A B 3 OK 5984 5980 5983 6004 C2' A B 4 OK 6006 6002 6005 6026 C2' A B 5 OK 6028 6024 6027 6048 C2' U B 6 OK 6050 6046 6049 6068 C2' U B 7 OK 6070 6066 6069 6088 C2' A B 8 OK 6090 6086 6089 6110 C2' G B 9 OK 6112 6108 6111 6133 C2' G B 10 OK 6135 6131 6134 6156 C2' U B 11 OK 6158 6154 6157 6176 C2' G B 12 OK 6178 6174 6177 6199 C2' C B 13 OK 6201 6197 6200 6219 C2' G B 14 OK 6221 6217 6220 6242 C2' C B 15 OK 6244 6240 6243 6262 C2' U B 16 OK 6264 6260 6263 6282 C2' U B 17 OK 6284 6280 6283 6302 C2' G B 18 OK 6304 6300 6303 6325 C2' G B 19 OK 6327 6323 6326 6348 C2' C B 20 OK 6350 6346 6349 6368 C2' G B 21 OK 6370 6366 6369 6391 C2' U B 22 OK 6393 6389 6392 6411 C2' U B 23 OK 6413 6409 6412 6431 C2' U B 24 OK 6433 6429 6432 6451 C2' U B 25 OK 6453 6449 6452 6471 C2' A B 26 OK 6473 6469 6472 6493 C2' G B 27 OK 6495 6491 6494 6516 C2' U B 28 OK 6518 6514 6517 6536 C2' C B 29 OK 6538 6534 6537 6556 C2' C B 30 OK 6558 6554 6557 6576 C2' C B 31 OK 6578 6574 6577 6596 C2' U B 32 OK 6598 6594 6597 6616 C2' G B 33 OK 6618 6614 6617 6639 C2' A B 34 OK 6641 6637 6640 6661 C2' A B 35 OK 6663 6659 6662 6683 C2' A B 36 OK 6685 6681 6684 6705 C2' A B 37 OK 6707 6703 6706 6727 C2' G B 38 OK 6729 6725 6728 6750 C2' G B 39 OK 6752 6748 6751 6773 C2' G B 40 OK 6775 6771 6774 6796 C2' A B 41 OK 6798 6794 6797 6818 C2' C B 42 OK 6820 6816 6819 6838 C2' U B 43 OK 6840 6836 6839 6858 C2' A B 44 OK 6860 6856 6859 6880 C2' A B 45 OK 6882 6878 6881 6902 C2' A B 46 OK 6904 6900 6903 6924 C2' A B 47 OK 6926 6922 6925 6946 C2' U B 48 OK 6948 6944 6947 6966 C2' A B 49 OK 6968 6964 6967 6988 C2' A B 50 OK 6990 6986 6989 7010 C2' A B 51 OK 7012 7008 7011 7032 C2' G B 52 OK 7034 7030 7033 7055 C2' A B 53 OK 7057 7053 7056 7077 C2' G B 54 OK 7079 7075 7078 7100 C2' U B 55 OK 7102 7098 7101 7120 C2' U B 56 OK 7122 7118 7121 7140 C2' U B 57 OK 7142 7138 7141 7160 C2' G B 58 OK 7162 7158 7161 7183 C2' C B 59 OK 7185 7181 7184 7203 C2' G B 60 OK 7205 7201 7204 7226 C2' G B 61 OK 7228 7224 7227 7249 C2' G B 62 OK 7251 7247 7250 7272 C2' A B 63 OK 7274 7270 7273 7294 C2' C B 64 OK 7296 7292 7295 7314 C2' U B 65 OK 7316 7312 7315 7334 C2' C B 66 OK 7336 7332 7335 7354 C2' U B 67 OK 7356 7352 7355 7374 C2' G B 68 OK 7376 7372 7375 7397 C2' C B 69 OK 7399 7395 7398 7417 C2' G B 70 OK 7419 7415 7418 7440 C2' G B 71 OK 7442 7438 7441 7463 C2' G B 72 OK 7465 7461 7464 7486 C2' G B 73 OK 7488 7484 7487 7509 C2' U B 74 OK 7511 7507 7510 7529 C2' U B 75 OK 7531 7527 7530 7549 C2' A B 76 OK 7551 7547 7550 7571 C2' C B 77 OK 7573 7569 7572 7591 C2' A B 78 OK 7593 7589 7592 7613 C2' A B 79 OK 7615 7611 7614 7635 C2' U B 80 OK 7637 7633 7636 7655 C2' C B 81 OK 7657 7653 7656 7675 C2' C B 82 OK 7677 7673 7676 7695 C2' C B 83 OK 7697 7693 7696 7715 C2' C B 84 OK 7717 7713 7716 7735 C2' U B 85 OK 7737 7733 7736 7755 C2' A B 86 OK 7757 7753 7756 7777 C2' A B 87 OK 7779 7775 7778 7799 C2' A B 88 OK 7801 7797 7800 7821 C2' A B 89 OK 7823 7819 7822 7843 C2' C B 90 OK 7845 7841 7844 7863 C2' C B 91 OK 7865 7861 7864 7883 C2' G B 92 OK 7885 7881 7884 7906 C2' C B 93 OK 7908 7904 7907 7924 C2' DC C -7 7925 7922 7943 C2' DT C -6 7944 7941 7963 C2' DG C -5 7964 7961 7985 C2' DT C -4 7986 7983 8005 C2' DT C -3 8006 8003 8025 C2' DT C -2 8026 8023 8045 C2' DC C -1 8046 8043 8064 C2' DT C 0 8065 8062 8084 C2' DG C 1 8085 8082 8106 C2' DC C 2 8107 8104 8125 C2' DC C 3 8126 8123 8144 C2' DA C 4 8145 8142 8165 C2' DA C 5 8166 8163 8186 C2' DG C 6 8187 8184 8208 C2' DC C 7 8209 8206 8227 C2' DG C 8 8228 8225 8249 C2' DC C 9 8250 8247 8268 C2' DA C 10 8269 8266 8289 C2' DC C 11 8290 8287 8308 C2' DC C 12 8309 8306 8327 C2' DT C 13 8328 8325 8347 C2' DA C 14 8348 8345 8368 C2' DA C 15 8369 8366 8389 C2' DT C 16 8390 8387 8409 C2' DT C 17 8410 8407 8429 C2' DT C 18 8430 8427 8449 C2' DC C 19 8450 8447 8468 C2' DC C 20 8469 8466 8485 C2' DA D 1 8486 8483 8506 C2' DG D 2 8507 8504 8528 C2' DA D 3 8529 8526 8549 C2' DA D 4 8550 8547 8570 C2' DA D 5 8571 8568 8591 C2' DC D 6 8592 8589 8610 C2' DA D 7 8611 8608 8631 C2' DG D 8 8632 8629 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 5934 C3' G B 1 OK 5932 5935 5936 5957 C3' G B 2 OK 5955 5958 5959 5980 C3' A B 3 OK 5978 5981 5982 6002 C3' A B 4 OK 6000 6003 6004 6024 C3' A B 5 OK 6022 6025 6026 6046 C3' U B 6 OK 6044 6047 6048 6066 C3' U B 7 OK 6064 6067 6068 6086 C3' A B 8 OK 6084 6087 6088 6108 C3' G B 9 OK 6106 6109 6110 6131 C3' G B 10 OK 6129 6132 6133 6154 C3' U B 11 OK 6152 6155 6156 6174 C3' G B 12 OK 6172 6175 6176 6197 C3' C B 13 OK 6195 6198 6199 6217 C3' G B 14 OK 6215 6218 6219 6240 C3' C B 15 OK 6238 6241 6242 6260 C3' U B 16 OK 6258 6261 6262 6280 C3' U B 17 OK 6278 6281 6282 6300 C3' G B 18 OK 6298 6301 6302 6323 C3' G B 19 OK 6321 6324 6325 6346 C3' C B 20 OK 6344 6347 6348 6366 C3' G B 21 OK 6364 6367 6368 6389 C3' U B 22 OK 6387 6390 6391 6409 C3' U B 23 OK 6407 6410 6411 6429 C3' U B 24 OK 6427 6430 6431 6449 C3' U B 25 OK 6447 6450 6451 6469 C3' A B 26 OK 6467 6470 6471 6491 C3' G B 27 OK 6489 6492 6493 6514 C3' U B 28 OK 6512 6515 6516 6534 C3' C B 29 OK 6532 6535 6536 6554 C3' C B 30 OK 6552 6555 6556 6574 C3' C B 31 OK 6572 6575 6576 6594 C3' U B 32 OK 6592 6595 6596 6614 C3' G B 33 OK 6612 6615 6616 6637 C3' A B 34 OK 6635 6638 6639 6659 C3' A B 35 OK 6657 6660 6661 6681 C3' A B 36 OK 6679 6682 6683 6703 C3' A B 37 OK 6701 6704 6705 6725 C3' G B 38 OK 6723 6726 6727 6748 C3' G B 39 OK 6746 6749 6750 6771 C3' G B 40 OK 6769 6772 6773 6794 C3' A B 41 OK 6792 6795 6796 6816 C3' C B 42 OK 6814 6817 6818 6836 C3' U B 43 OK 6834 6837 6838 6856 C3' A B 44 OK 6854 6857 6858 6878 C3' A B 45 OK 6876 6879 6880 6900 C3' A B 46 OK 6898 6901 6902 6922 C3' A B 47 OK 6920 6923 6924 6944 C3' U B 48 OK 6942 6945 6946 6964 C3' A B 49 OK 6962 6965 6966 6986 C3' A B 50 OK 6984 6987 6988 7008 C3' A B 51 OK 7006 7009 7010 7030 C3' G B 52 OK 7028 7031 7032 7053 C3' A B 53 OK 7051 7054 7055 7075 C3' G B 54 OK 7073 7076 7077 7098 C3' U B 55 OK 7096 7099 7100 7118 C3' U B 56 OK 7116 7119 7120 7138 C3' U B 57 OK 7136 7139 7140 7158 C3' G B 58 OK 7156 7159 7160 7181 C3' C B 59 OK 7179 7182 7183 7201 C3' G B 60 OK 7199 7202 7203 7224 C3' G B 61 OK 7222 7225 7226 7247 C3' G B 62 OK 7245 7248 7249 7270 C3' A B 63 OK 7268 7271 7272 7292 C3' C B 64 OK 7290 7293 7294 7312 C3' U B 65 OK 7310 7313 7314 7332 C3' C B 66 OK 7330 7333 7334 7352 C3' U B 67 OK 7350 7353 7354 7372 C3' G B 68 OK 7370 7373 7374 7395 C3' C B 69 OK 7393 7396 7397 7415 C3' G B 70 OK 7413 7416 7417 7438 C3' G B 71 OK 7436 7439 7440 7461 C3' G B 72 OK 7459 7462 7463 7484 C3' G B 73 OK 7482 7485 7486 7507 C3' U B 74 OK 7505 7508 7509 7527 C3' U B 75 OK 7525 7528 7529 7547 C3' A B 76 OK 7545 7548 7549 7569 C3' C B 77 OK 7567 7570 7571 7589 C3' A B 78 OK 7587 7590 7591 7611 C3' A B 79 OK 7609 7612 7613 7633 C3' U B 80 OK 7631 7634 7635 7653 C3' C B 81 OK 7651 7654 7655 7673 C3' C B 82 OK 7671 7674 7675 7693 C3' C B 83 OK 7691 7694 7695 7713 C3' C B 84 OK 7711 7714 7715 7733 C3' U B 85 OK 7731 7734 7735 7753 C3' A B 86 OK 7751 7754 7755 7775 C3' A B 87 OK 7773 7776 7777 7797 C3' A B 88 OK 7795 7798 7799 7819 C3' A B 89 OK 7817 7820 7821 7841 C3' C B 90 OK 7839 7842 7843 7861 C3' C B 91 OK 7859 7862 7863 7881 C3' G B 92 OK 7879 7882 7883 7904 C3' C B 93 OK 7902 7905 7906 7922 C3' DC C -7 OK 7920 7923 7924 7941 C3' DT C -6 OK 7939 7942 7943 7961 C3' DG C -5 OK 7959 7962 7963 7983 C3' DT C -4 OK 7981 7984 7985 8003 C3' DT C -3 OK 8001 8004 8005 8023 C3' DT C -2 OK 8021 8024 8025 8043 C3' DC C -1 OK 8041 8044 8045 8062 C3' DT C 0 OK 8060 8063 8064 8082 C3' DG C 1 OK 8080 8083 8084 8104 C3' DC C 2 OK 8102 8105 8106 8123 C3' DC C 3 OK 8121 8124 8125 8142 C3' DA C 4 OK 8140 8143 8144 8163 C3' DA C 5 OK 8161 8164 8165 8184 C3' DG C 6 OK 8182 8185 8186 8206 C3' DC C 7 OK 8204 8207 8208 8225 C3' DG C 8 OK 8223 8226 8227 8247 C3' DC C 9 OK 8245 8248 8249 8266 C3' DA C 10 OK 8264 8267 8268 8287 C3' DC C 11 OK 8285 8288 8289 8306 C3' DC C 12 OK 8304 8307 8308 8325 C3' DT C 13 OK 8323 8326 8327 8345 C3' DA C 14 OK 8343 8346 8347 8366 C3' DA C 15 OK 8364 8367 8368 8387 C3' DT C 16 OK 8385 8388 8389 8407 C3' DT C 17 OK 8405 8408 8409 8427 C3' DT C 18 OK 8425 8428 8429 8447 C3' DC C 19 OK 8445 8448 8449 8466 C3' DC C 20 OK 8464 8467 8468 8483 C3' DA D 1 OK 8481 8484 8485 8504 C3' DG D 2 OK 8502 8505 8506 8526 C3' DA D 3 OK 8524 8527 8528 8547 C3' DA D 4 OK 8545 8548 8549 8568 C3' DA D 5 OK 8566 8569 8570 8589 C3' DC D 6 OK 8587 8590 8591 8608 C3' DA D 7 OK 8606 8609 8610 8629 C3' DG D 8 OK 8627 8630 8631 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 5932 C4' G B 1 OK 5934 5931 5933 5955 C4' G B 2 OK 5957 5954 5956 5978 C4' A B 3 OK 5980 5977 5979 6000 C4' A B 4 OK 6002 5999 6001 6022 C4' A B 5 OK 6024 6021 6023 6044 C4' U B 6 OK 6046 6043 6045 6064 C4' U B 7 OK 6066 6063 6065 6084 C4' A B 8 OK 6086 6083 6085 6106 C4' G B 9 OK 6108 6105 6107 6129 C4' G B 10 OK 6131 6128 6130 6152 C4' U B 11 OK 6154 6151 6153 6172 C4' G B 12 OK 6174 6171 6173 6195 C4' C B 13 OK 6197 6194 6196 6215 C4' G B 14 OK 6217 6214 6216 6238 C4' C B 15 OK 6240 6237 6239 6258 C4' U B 16 OK 6260 6257 6259 6278 C4' U B 17 OK 6280 6277 6279 6298 C4' G B 18 OK 6300 6297 6299 6321 C4' G B 19 OK 6323 6320 6322 6344 C4' C B 20 OK 6346 6343 6345 6364 C4' G B 21 OK 6366 6363 6365 6387 C4' U B 22 OK 6389 6386 6388 6407 C4' U B 23 OK 6409 6406 6408 6427 C4' U B 24 OK 6429 6426 6428 6447 C4' U B 25 OK 6449 6446 6448 6467 C4' A B 26 OK 6469 6466 6468 6489 C4' G B 27 OK 6491 6488 6490 6512 C4' U B 28 OK 6514 6511 6513 6532 C4' C B 29 OK 6534 6531 6533 6552 C4' C B 30 OK 6554 6551 6553 6572 C4' C B 31 OK 6574 6571 6573 6592 C4' U B 32 OK 6594 6591 6593 6612 C4' G B 33 OK 6614 6611 6613 6635 C4' A B 34 OK 6637 6634 6636 6657 C4' A B 35 OK 6659 6656 6658 6679 C4' A B 36 OK 6681 6678 6680 6701 C4' A B 37 OK 6703 6700 6702 6723 C4' G B 38 OK 6725 6722 6724 6746 C4' G B 39 OK 6748 6745 6747 6769 C4' G B 40 OK 6771 6768 6770 6792 C4' A B 41 OK 6794 6791 6793 6814 C4' C B 42 OK 6816 6813 6815 6834 C4' U B 43 OK 6836 6833 6835 6854 C4' A B 44 OK 6856 6853 6855 6876 C4' A B 45 OK 6878 6875 6877 6898 C4' A B 46 OK 6900 6897 6899 6920 C4' A B 47 OK 6922 6919 6921 6942 C4' U B 48 OK 6944 6941 6943 6962 C4' A B 49 OK 6964 6961 6963 6984 C4' A B 50 OK 6986 6983 6985 7006 C4' A B 51 OK 7008 7005 7007 7028 C4' G B 52 OK 7030 7027 7029 7051 C4' A B 53 OK 7053 7050 7052 7073 C4' G B 54 OK 7075 7072 7074 7096 C4' U B 55 OK 7098 7095 7097 7116 C4' U B 56 OK 7118 7115 7117 7136 C4' U B 57 OK 7138 7135 7137 7156 C4' G B 58 OK 7158 7155 7157 7179 C4' C B 59 OK 7181 7178 7180 7199 C4' G B 60 OK 7201 7198 7200 7222 C4' G B 61 OK 7224 7221 7223 7245 C4' G B 62 OK 7247 7244 7246 7268 C4' A B 63 OK 7270 7267 7269 7290 C4' C B 64 OK 7292 7289 7291 7310 C4' U B 65 OK 7312 7309 7311 7330 C4' C B 66 OK 7332 7329 7331 7350 C4' U B 67 OK 7352 7349 7351 7370 C4' G B 68 OK 7372 7369 7371 7393 C4' C B 69 OK 7395 7392 7394 7413 C4' G B 70 OK 7415 7412 7414 7436 C4' G B 71 OK 7438 7435 7437 7459 C4' G B 72 OK 7461 7458 7460 7482 C4' G B 73 OK 7484 7481 7483 7505 C4' U B 74 OK 7507 7504 7506 7525 C4' U B 75 OK 7527 7524 7526 7545 C4' A B 76 OK 7547 7544 7546 7567 C4' C B 77 OK 7569 7566 7568 7587 C4' A B 78 OK 7589 7586 7588 7609 C4' A B 79 OK 7611 7608 7610 7631 C4' U B 80 OK 7633 7630 7632 7651 C4' C B 81 OK 7653 7650 7652 7671 C4' C B 82 OK 7673 7670 7672 7691 C4' C B 83 OK 7693 7690 7692 7711 C4' C B 84 OK 7713 7710 7712 7731 C4' U B 85 OK 7733 7730 7732 7751 C4' A B 86 OK 7753 7750 7752 7773 C4' A B 87 OK 7775 7772 7774 7795 C4' A B 88 OK 7797 7794 7796 7817 C4' A B 89 OK 7819 7816 7818 7839 C4' C B 90 OK 7841 7838 7840 7859 C4' C B 91 OK 7861 7858 7860 7879 C4' G B 92 OK 7881 7878 7880 7902 C4' C B 93 OK 7904 7901 7903 7920 C4' DC C -7 OK 7922 7919 7921 7939 C4' DT C -6 OK 7941 7938 7940 7959 C4' DG C -5 OK 7961 7958 7960 7981 C4' DT C -4 OK 7983 7980 7982 8001 C4' DT C -3 OK 8003 8000 8002 8021 C4' DT C -2 OK 8023 8020 8022 8041 C4' DC C -1 OK 8043 8040 8042 8060 C4' DT C 0 OK 8062 8059 8061 8080 C4' DG C 1 OK 8082 8079 8081 8102 C4' DC C 2 OK 8104 8101 8103 8121 C4' DC C 3 OK 8123 8120 8122 8140 C4' DA C 4 OK 8142 8139 8141 8161 C4' DA C 5 OK 8163 8160 8162 8182 C4' DG C 6 OK 8184 8181 8183 8204 C4' DC C 7 OK 8206 8203 8205 8223 C4' DG C 8 OK 8225 8222 8224 8245 C4' DC C 9 OK 8247 8244 8246 8264 C4' DA C 10 OK 8266 8263 8265 8285 C4' DC C 11 OK 8287 8284 8286 8304 C4' DC C 12 OK 8306 8303 8305 8323 C4' DT C 13 OK 8325 8322 8324 8343 C4' DA C 14 OK 8345 8342 8344 8364 C4' DA C 15 OK 8366 8363 8365 8385 C4' DT C 16 OK 8387 8384 8386 8405 C4' DT C 17 OK 8407 8404 8406 8425 C4' DT C 18 OK 8427 8424 8426 8445 C4' DC C 19 OK 8447 8444 8446 8464 C4' DC C 20 OK 8466 8463 8465 8481 C4' DA D 1 OK 8483 8480 8482 8502 C4' DG D 2 OK 8504 8501 8503 8524 C4' DA D 3 OK 8526 8523 8525 8545 C4' DA D 4 OK 8547 8544 8546 8566 C4' DA D 5 OK 8568 8565 8567 8587 C4' DC D 6 OK 8589 8586 8588 8606 C4' DA D 7 OK 8608 8605 8607 8627 C4' DG D 8 OK 8629 8626 8628 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 5931 C5' G B 1 5930 5932 5954 C5' G B 2 5953 5955 5977 C5' A B 3 5976 5978 5999 C5' A B 4 5998 6000 6021 C5' A B 5 6020 6022 6043 C5' U B 6 6042 6044 6063 C5' U B 7 6062 6064 6083 C5' A B 8 6082 6084 6105 C5' G B 9 6104 6106 6128 C5' G B 10 6127 6129 6151 C5' U B 11 6150 6152 6171 C5' G B 12 6170 6172 6194 C5' C B 13 6193 6195 6214 C5' G B 14 6213 6215 6237 C5' C B 15 6236 6238 6257 C5' U B 16 6256 6258 6277 C5' U B 17 6276 6278 6297 C5' G B 18 6296 6298 6320 C5' G B 19 6319 6321 6343 C5' C B 20 6342 6344 6363 C5' G B 21 6362 6364 6386 C5' U B 22 6385 6387 6406 C5' U B 23 6405 6407 6426 C5' U B 24 6425 6427 6446 C5' U B 25 6445 6447 6466 C5' A B 26 6465 6467 6488 C5' G B 27 6487 6489 6511 C5' U B 28 6510 6512 6531 C5' C B 29 6530 6532 6551 C5' C B 30 6550 6552 6571 C5' C B 31 6570 6572 6591 C5' U B 32 6590 6592 6611 C5' G B 33 6610 6612 6634 C5' A B 34 6633 6635 6656 C5' A B 35 6655 6657 6678 C5' A B 36 6677 6679 6700 C5' A B 37 6699 6701 6722 C5' G B 38 6721 6723 6745 C5' G B 39 6744 6746 6768 C5' G B 40 6767 6769 6791 C5' A B 41 6790 6792 6813 C5' C B 42 6812 6814 6833 C5' U B 43 6832 6834 6853 C5' A B 44 6852 6854 6875 C5' A B 45 6874 6876 6897 C5' A B 46 6896 6898 6919 C5' A B 47 6918 6920 6941 C5' U B 48 6940 6942 6961 C5' A B 49 6960 6962 6983 C5' A B 50 6982 6984 7005 C5' A B 51 7004 7006 7027 C5' G B 52 7026 7028 7050 C5' A B 53 7049 7051 7072 C5' G B 54 7071 7073 7095 C5' U B 55 7094 7096 7115 C5' U B 56 7114 7116 7135 C5' U B 57 7134 7136 7155 C5' G B 58 7154 7156 7178 C5' C B 59 7177 7179 7198 C5' G B 60 7197 7199 7221 C5' G B 61 7220 7222 7244 C5' G B 62 7243 7245 7267 C5' A B 63 7266 7268 7289 C5' C B 64 7288 7290 7309 C5' U B 65 7308 7310 7329 C5' C B 66 7328 7330 7349 C5' U B 67 7348 7350 7369 C5' G B 68 7368 7370 7392 C5' C B 69 7391 7393 7412 C5' G B 70 7411 7413 7435 C5' G B 71 7434 7436 7458 C5' G B 72 7457 7459 7481 C5' G B 73 7480 7482 7504 C5' U B 74 7503 7505 7524 C5' U B 75 7523 7525 7544 C5' A B 76 7543 7545 7566 C5' C B 77 7565 7567 7586 C5' A B 78 7585 7587 7608 C5' A B 79 7607 7609 7630 C5' U B 80 7629 7631 7650 C5' C B 81 7649 7651 7670 C5' C B 82 7669 7671 7690 C5' C B 83 7689 7691 7710 C5' C B 84 7709 7711 7730 C5' U B 85 7729 7731 7750 C5' A B 86 7749 7751 7772 C5' A B 87 7771 7773 7794 C5' A B 88 7793 7795 7816 C5' A B 89 7815 7817 7838 C5' C B 90 7837 7839 7858 C5' C B 91 7857 7859 7878 C5' G B 92 7877 7879 7901 C5' C B 93 7900 7902 7919 C5' DC C -7 7918 7920 7938 C5' DT C -6 7937 7939 7958 C5' DG C -5 7957 7959 7980 C5' DT C -4 7979 7981 8000 C5' DT C -3 7999 8001 8020 C5' DT C -2 8019 8021 8040 C5' DC C -1 8039 8041 8059 C5' DT C 0 8058 8060 8079 C5' DG C 1 8078 8080 8101 C5' DC C 2 8100 8102 8120 C5' DC C 3 8119 8121 8139 C5' DA C 4 8138 8140 8160 C5' DA C 5 8159 8161 8181 C5' DG C 6 8180 8182 8203 C5' DC C 7 8202 8204 8222 C5' DG C 8 8221 8223 8244 C5' DC C 9 8243 8245 8263 C5' DA C 10 8262 8264 8284 C5' DC C 11 8283 8285 8303 C5' DC C 12 8302 8304 8322 C5' DT C 13 8321 8323 8342 C5' DA C 14 8341 8343 8363 C5' DA C 15 8362 8364 8384 C5' DT C 16 8383 8385 8404 C5' DT C 17 8403 8405 8424 C5' DT C 18 8423 8425 8444 C5' DC C 19 8443 8445 8463 C5' DC C 20 8462 8464 8480 C5' DA D 1 8479 8481 8501 C5' DG D 2 8500 8502 8523 C5' DA D 3 8522 8524 8544 C5' DA D 4 8543 8545 8565 C5' DA D 5 8564 8566 8586 C5' DC D 6 8585 8587 8605 C5' DA D 7 8604 8606 8626 C5' DG D 8 8625 8627 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 5927 P G B 1 distorted distorted 5928 5929 5930 5950 P G B 2 distorted distorted 5935 5951 5952 5953 5973 P A B 3 distorted distorted 5958 5974 5975 5976 5995 P A B 4 distorted distorted 5981 5996 5997 5998 6017 P A B 5 distorted distorted 6003 6018 6019 6020 6039 P U B 6 distorted distorted 6025 6040 6041 6042 6059 P U B 7 distorted distorted 6047 6060 6061 6062 6079 P A B 8 distorted distorted 6067 6080 6081 6082 6101 P G B 9 distorted distorted 6087 6102 6103 6104 6124 P G B 10 distorted distorted 6109 6125 6126 6127 6147 P U B 11 distorted distorted 6132 6148 6149 6150 6167 P G B 12 distorted distorted 6155 6168 6169 6170 6190 P C B 13 distorted distorted 6175 6191 6192 6193 6210 P G B 14 distorted distorted 6198 6211 6212 6213 6233 P C B 15 distorted distorted 6218 6234 6235 6236 6253 P U B 16 distorted distorted 6241 6254 6255 6256 6273 P U B 17 distorted distorted 6261 6274 6275 6276 6293 P G B 18 distorted distorted 6281 6294 6295 6296 6316 P G B 19 distorted distorted 6301 6317 6318 6319 6339 P C B 20 distorted distorted 6324 6340 6341 6342 6359 P G B 21 distorted distorted 6347 6360 6361 6362 6382 P U B 22 distorted distorted 6367 6383 6384 6385 6402 P U B 23 distorted distorted 6390 6403 6404 6405 6422 P U B 24 distorted distorted 6410 6423 6424 6425 6442 P U B 25 distorted distorted 6430 6443 6444 6445 6462 P A B 26 distorted distorted 6450 6463 6464 6465 6484 P G B 27 distorted distorted 6470 6485 6486 6487 6507 P U B 28 distorted distorted 6492 6508 6509 6510 6527 P C B 29 distorted distorted 6515 6528 6529 6530 6547 P C B 30 distorted distorted 6535 6548 6549 6550 6567 P C B 31 distorted distorted 6555 6568 6569 6570 6587 P U B 32 distorted distorted 6575 6588 6589 6590 6607 P G B 33 distorted distorted 6595 6608 6609 6610 6630 P A B 34 distorted distorted 6615 6631 6632 6633 6652 P A B 35 distorted distorted 6638 6653 6654 6655 6674 P A B 36 distorted distorted 6660 6675 6676 6677 6696 P A B 37 distorted distorted 6682 6697 6698 6699 6718 P G B 38 distorted distorted 6704 6719 6720 6721 6741 P G B 39 distorted distorted 6726 6742 6743 6744 6764 P G B 40 distorted distorted 6749 6765 6766 6767 6787 P A B 41 distorted distorted 6772 6788 6789 6790 6809 P C B 42 distorted distorted 6795 6810 6811 6812 6829 P U B 43 distorted distorted 6817 6830 6831 6832 6849 P A B 44 distorted distorted 6837 6850 6851 6852 6871 P A B 45 distorted distorted 6857 6872 6873 6874 6893 P A B 46 distorted distorted 6879 6894 6895 6896 6915 P A B 47 distorted distorted 6901 6916 6917 6918 6937 P U B 48 distorted distorted 6923 6938 6939 6940 6957 P A B 49 distorted distorted 6945 6958 6959 6960 6979 P A B 50 distorted distorted 6965 6980 6981 6982 7001 P A B 51 distorted distorted 6987 7002 7003 7004 7023 P G B 52 distorted distorted 7009 7024 7025 7026 7046 P A B 53 distorted distorted 7031 7047 7048 7049 7068 P G B 54 distorted distorted 7054 7069 7070 7071 7091 P U B 55 distorted distorted 7076 7092 7093 7094 7111 P U B 56 distorted distorted 7099 7112 7113 7114 7131 P U B 57 distorted distorted 7119 7132 7133 7134 7151 P G B 58 distorted distorted 7139 7152 7153 7154 7174 P C B 59 distorted distorted 7159 7175 7176 7177 7194 P G B 60 distorted distorted 7182 7195 7196 7197 7217 P G B 61 distorted distorted 7202 7218 7219 7220 7240 P G B 62 distorted distorted 7225 7241 7242 7243 7263 P A B 63 distorted distorted 7248 7264 7265 7266 7285 P C B 64 distorted distorted 7271 7286 7287 7288 7305 P U B 65 distorted distorted 7293 7306 7307 7308 7325 P C B 66 distorted distorted 7313 7326 7327 7328 7345 P U B 67 distorted distorted 7333 7346 7347 7348 7365 P G B 68 distorted distorted 7353 7366 7367 7368 7388 P C B 69 distorted distorted 7373 7389 7390 7391 7408 P G B 70 distorted distorted 7396 7409 7410 7411 7431 P G B 71 distorted distorted 7416 7432 7433 7434 7454 P G B 72 distorted distorted 7439 7455 7456 7457 7477 P G B 73 distorted distorted 7462 7478 7479 7480 7500 P U B 74 distorted distorted 7485 7501 7502 7503 7520 P U B 75 distorted distorted 7508 7521 7522 7523 7540 P A B 76 distorted distorted 7528 7541 7542 7543 7562 P C B 77 distorted distorted 7548 7563 7564 7565 7582 P A B 78 distorted distorted 7570 7583 7584 7585 7604 P A B 79 distorted distorted 7590 7605 7606 7607 7626 P U B 80 distorted distorted 7612 7627 7628 7629 7646 P C B 81 distorted distorted 7634 7647 7648 7649 7666 P C B 82 distorted distorted 7654 7667 7668 7669 7686 P C B 83 distorted distorted 7674 7687 7688 7689 7706 P C B 84 distorted distorted 7694 7707 7708 7709 7726 P U B 85 distorted distorted 7714 7727 7728 7729 7746 P A B 86 distorted distorted 7734 7747 7748 7749 7768 P A B 87 distorted distorted 7754 7769 7770 7771 7790 P A B 88 distorted distorted 7776 7791 7792 7793 7812 P A B 89 distorted distorted 7798 7813 7814 7815 7834 P C B 90 distorted distorted 7820 7835 7836 7837 7854 P C B 91 distorted distorted 7842 7855 7856 7857 7874 P G B 92 distorted distorted 7862 7875 7876 7877 7897 P C B 93 distorted distorted 7882 7898 7899 7900 7934 P DT C -6 distorted distorted 7923 7935 7936 7937 7954 P DG C -5 distorted distorted 7942 7955 7956 7957 7976 P DT C -4 distorted distorted 7962 7977 7978 7979 7996 P DT C -3 distorted distorted 7984 7997 7998 7999 8016 P DT C -2 distorted distorted 8004 8017 8018 8019 8036 P DC C -1 distorted distorted 8024 8037 8038 8039 8055 P DT C 0 distorted distorted 8044 8056 8057 8058 8075 P DG C 1 distorted distorted 8063 8076 8077 8078 8097 P DC C 2 distorted distorted 8083 8098 8099 8100 8116 P DC C 3 distorted distorted 8105 8117 8118 8119 8135 P DA C 4 distorted distorted 8124 8136 8137 8138 8156 P DA C 5 distorted distorted 8143 8157 8158 8159 8177 P DG C 6 distorted distorted 8164 8178 8179 8180 8199 P DC C 7 distorted distorted 8185 8200 8201 8202 8218 P DG C 8 distorted distorted 8207 8219 8220 8221 8240 P DC C 9 distorted distorted 8226 8241 8242 8243 8259 P DA C 10 distorted distorted 8248 8260 8261 8262 8280 P DC C 11 distorted distorted 8267 8281 8282 8283 8299 P DC C 12 distorted distorted 8288 8300 8301 8302 8318 P DT C 13 distorted distorted 8307 8319 8320 8321 8338 P DA C 14 distorted distorted 8326 8339 8340 8341 8359 P DA C 15 distorted distorted 8346 8360 8361 8362 8380 P DT C 16 distorted distorted 8367 8381 8382 8383 8400 P DT C 17 distorted distorted 8388 8401 8402 8403 8420 P DT C 18 distorted distorted 8408 8421 8422 8423 8440 P DC C 19 distorted distorted 8428 8441 8442 8443 8459 P DC C 20 distorted distorted 8448 8460 8461 8462 8497 P DG D 2 distorted distorted 8484 8498 8499 8500 8519 P DA D 3 distorted distorted 8505 8520 8521 8522 8540 P DA D 4 distorted distorted 8527 8541 8542 8543 8561 P DA D 5 distorted distorted 8548 8562 8563 8564 8582 P DC D 6 distorted distorted 8569 8583 8584 8585 8601 P DA D 7 distorted distorted 8590 8602 8603 8604 8622 P DG D 8 distorted distorted 8609 8623 8624 8625 ---------------------------------------------------------------------------------