ID code: '5SWD' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 13 C1' G A 13 beta 8 14 11 36 C1' G A 14 beta 31 37 34 59 C1' G A 15 beta 54 60 57 82 C1' A A 16 beta 77 83 80 104 C1' A A 17 beta 99 105 102 126 C1' G A 18 beta 121 127 124 149 C1' A A 19 beta 144 150 147 171 C1' U A 20 beta 166 172 169 235 C1' U A 22 beta 230 236 233 255 C1' A A 23 beta 250 256 253 277 C1' A A 24 beta 272 278 275 299 C1' U A 25 beta 294 300 297 319 C1' C A 26 beta 314 320 317 339 C1' C A 27 beta 334 340 337 359 C1' U A 28 beta 354 360 357 379 C1' A A 29 beta 374 380 377 401 C1' A A 30 beta 396 402 399 423 C1' U A 31 beta 418 424 421 443 C1' G A 32 beta 438 444 441 466 C1' A A 33 beta 461 467 464 488 C1' U A 34 beta 483 489 486 508 C1' A A 35 beta 503 509 506 530 C1' U A 36 beta 525 531 528 550 C1' G A 37 beta 545 551 548 573 C1' G A 38 beta 568 574 571 596 C1' U A 39 beta 591 597 594 616 C1' U A 40 beta 611 617 614 636 C1' U A 41 beta 631 637 634 656 C1' G A 42 beta 651 657 654 679 C1' G A 43 beta 674 680 677 702 C1' G A 44 beta 697 703 700 725 C1' A A 45 beta 720 726 723 747 C1' G A 46 beta 742 748 745 770 C1' U A 47 beta 765 771 768 830 C1' U A 49 beta 825 831 828 850 C1' C A 50 beta 845 851 848 870 C1' U A 51 beta 865 871 868 890 C1' A A 52 beta 885 891 888 912 C1' C A 53 beta 907 913 910 932 C1' C A 54 beta 927 933 930 952 C1' A A 55 beta 947 953 950 974 C1' A A 56 beta 969 975 972 996 C1' G A 57 beta 991 997 994 1019 C1' A A 58 beta 1014 1020 1017 1041 C1' G A 59 beta 1036 1042 1039 1064 C1' C A 60 beta 1059 1065 1062 1084 C1' C A 61 beta 1079 1085 1082 1104 C1' U A 62 beta 1099 1105 1102 1124 C1' U A 63 beta 1119 1125 1122 1144 C1' A A 64 beta 1139 1145 1142 1166 C1' A A 65 beta 1161 1167 1164 1188 C1' A A 66 beta 1183 1189 1186 1210 C1' C A 67 beta 1205 1211 1208 1230 C1' U A 68 beta 1225 1231 1228 1250 C1' C A 69 beta 1245 1251 1248 1270 C1' U A 70 beta 1265 1271 1268 1290 C1' U A 71 beta 1285 1291 1288 1310 C1' G A 72 beta 1305 1311 1308 1333 C1' A A 73 beta 1328 1334 1331 1355 C1' U A 74 beta 1350 1356 1353 1375 C1' U A 75 beta 1370 1376 1373 1395 C1' A A 76 beta 1390 1396 1393 1417 C1' U A 77 beta 1412 1418 1415 1439 C1' G B 13 beta 1434 1440 1437 1462 C1' G B 14 beta 1457 1463 1460 1485 C1' G B 15 beta 1480 1486 1483 1508 C1' A B 16 beta 1503 1509 1506 1530 C1' A B 17 beta 1525 1531 1528 1552 C1' G B 18 beta 1547 1553 1550 1575 C1' A B 19 beta 1570 1576 1573 1597 C1' U B 20 beta 1592 1598 1595 1617 C1' A B 21 beta 1612 1618 1615 1639 C1' U B 22 beta 1634 1640 1637 1659 C1' A B 23 beta 1654 1660 1657 1681 C1' A B 24 beta 1676 1682 1679 1703 C1' U B 25 beta 1698 1704 1701 1723 C1' C B 26 beta 1718 1724 1721 1743 C1' C B 27 beta 1738 1744 1741 1763 C1' U B 28 beta 1758 1764 1761 1783 C1' A B 29 beta 1778 1784 1781 1805 C1' A B 30 beta 1800 1806 1803 1827 C1' U B 31 beta 1822 1828 1825 1847 C1' G B 32 beta 1842 1848 1845 1870 C1' A B 33 beta 1865 1871 1868 1892 C1' U B 34 beta 1887 1893 1890 1912 C1' A B 35 beta 1907 1913 1910 1934 C1' U B 36 beta 1929 1935 1932 1954 C1' G B 37 beta 1949 1955 1952 1977 C1' G B 38 beta 1972 1978 1975 2000 C1' U B 39 beta 1995 2001 1998 2020 C1' U B 40 beta 2015 2021 2018 2040 C1' U B 41 beta 2035 2041 2038 2060 C1' G B 42 beta 2055 2061 2058 2083 C1' G B 43 beta 2078 2084 2081 2106 C1' G B 44 beta 2101 2107 2104 2129 C1' A B 45 beta 2124 2130 2127 2151 C1' G B 46 beta 2146 2152 2149 2174 C1' U B 47 beta 2169 2175 2172 2194 C1' U B 48 beta 2189 2195 2192 2214 C1' U B 49 beta 2209 2215 2212 2234 C1' C B 50 beta 2229 2235 2232 2254 C1' U B 51 beta 2249 2255 2252 2274 C1' A B 52 beta 2269 2275 2272 2296 C1' C B 53 beta 2291 2297 2294 2316 C1' C B 54 beta 2311 2317 2314 2336 C1' A B 55 beta 2331 2337 2334 2358 C1' A B 56 beta 2353 2359 2356 2380 C1' G B 57 beta 2375 2381 2378 2403 C1' A B 58 beta 2398 2404 2401 2425 C1' G B 59 beta 2420 2426 2423 2448 C1' C B 60 beta 2443 2449 2446 2468 C1' C B 61 beta 2463 2469 2466 2488 C1' U B 62 beta 2483 2489 2486 2508 C1' U B 63 beta 2503 2509 2506 2528 C1' A B 64 beta 2523 2529 2526 2550 C1' A B 65 beta 2545 2551 2548 2572 C1' A B 66 beta 2567 2573 2570 2594 C1' C B 67 beta 2589 2595 2592 2614 C1' U B 68 beta 2609 2615 2612 2634 C1' C B 69 beta 2629 2635 2632 2654 C1' U B 70 beta 2649 2655 2652 2674 C1' U B 71 beta 2669 2675 2672 2694 C1' G B 72 beta 2689 2695 2692 2717 C1' A B 73 beta 2712 2718 2715 2739 C1' U B 74 beta 2734 2740 2737 2759 C1' U B 75 beta 2754 2760 2757 2779 C1' A B 76 beta 2774 2780 2777 2801 C1' U B 77 beta 2796 2802 2799 2821 C1' C B 78 beta 2816 2822 2819 2841 C1' U B 79 beta 2836 2842 2839 2861 C1' U B 80 beta 2856 2862 2859 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 11 C2' G A 13 OK 13 9 12 34 C2' G A 14 OK 36 32 35 57 C2' G A 15 OK 59 55 58 80 C2' A A 16 OK 82 78 81 102 C2' A A 17 OK 104 100 103 124 C2' G A 18 OK 126 122 125 147 C2' A A 19 OK 149 145 148 169 C2' U A 20 OK 171 167 170 233 C2' U A 22 OK 235 231 234 253 C2' A A 23 OK 255 251 254 275 C2' A A 24 OK 277 273 276 297 C2' U A 25 OK 299 295 298 317 C2' C A 26 OK 319 315 318 337 C2' C A 27 OK 339 335 338 357 C2' U A 28 OK 359 355 358 377 C2' A A 29 OK 379 375 378 399 C2' A A 30 OK 401 397 400 421 C2' U A 31 OK 423 419 422 441 C2' G A 32 OK 443 439 442 464 C2' A A 33 OK 466 462 465 486 C2' U A 34 OK 488 484 487 506 C2' A A 35 OK 508 504 507 528 C2' U A 36 OK 530 526 529 548 C2' G A 37 OK 550 546 549 571 C2' G A 38 OK 573 569 572 594 C2' U A 39 OK 596 592 595 614 C2' U A 40 OK 616 612 615 634 C2' U A 41 OK 636 632 635 654 C2' G A 42 OK 656 652 655 677 C2' G A 43 OK 679 675 678 700 C2' G A 44 OK 702 698 701 723 C2' A A 45 OK 725 721 724 745 C2' G A 46 OK 747 743 746 768 C2' U A 47 OK 770 766 769 828 C2' U A 49 OK 830 826 829 848 C2' C A 50 OK 850 846 849 868 C2' U A 51 OK 870 866 869 888 C2' A A 52 OK 890 886 889 910 C2' C A 53 OK 912 908 911 930 C2' C A 54 OK 932 928 931 950 C2' A A 55 OK 952 948 951 972 C2' A A 56 OK 974 970 973 994 C2' G A 57 OK 996 992 995 1017 C2' A A 58 OK 1019 1015 1018 1039 C2' G A 59 OK 1041 1037 1040 1062 C2' C A 60 OK 1064 1060 1063 1082 C2' C A 61 OK 1084 1080 1083 1102 C2' U A 62 OK 1104 1100 1103 1122 C2' U A 63 OK 1124 1120 1123 1142 C2' A A 64 OK 1144 1140 1143 1164 C2' A A 65 OK 1166 1162 1165 1186 C2' A A 66 OK 1188 1184 1187 1208 C2' C A 67 OK 1210 1206 1209 1228 C2' U A 68 OK 1230 1226 1229 1248 C2' C A 69 OK 1250 1246 1249 1268 C2' U A 70 OK 1270 1266 1269 1288 C2' U A 71 OK 1290 1286 1289 1308 C2' G A 72 OK 1310 1306 1309 1331 C2' A A 73 OK 1333 1329 1332 1353 C2' U A 74 OK 1355 1351 1354 1373 C2' U A 75 OK 1375 1371 1374 1393 C2' A A 76 OK 1395 1391 1394 1415 C2' U A 77 OK 1417 1413 1416 1437 C2' G B 13 OK 1439 1435 1438 1460 C2' G B 14 OK 1462 1458 1461 1483 C2' G B 15 OK 1485 1481 1484 1506 C2' A B 16 OK 1508 1504 1507 1528 C2' A B 17 OK 1530 1526 1529 1550 C2' G B 18 OK 1552 1548 1551 1573 C2' A B 19 OK 1575 1571 1574 1595 C2' U B 20 OK 1597 1593 1596 1615 C2' A B 21 OK 1617 1613 1616 1637 C2' U B 22 OK 1639 1635 1638 1657 C2' A B 23 OK 1659 1655 1658 1679 C2' A B 24 OK 1681 1677 1680 1701 C2' U B 25 OK 1703 1699 1702 1721 C2' C B 26 OK 1723 1719 1722 1741 C2' C B 27 OK 1743 1739 1742 1761 C2' U B 28 OK 1763 1759 1762 1781 C2' A B 29 OK 1783 1779 1782 1803 C2' A B 30 OK 1805 1801 1804 1825 C2' U B 31 OK 1827 1823 1826 1845 C2' G B 32 OK 1847 1843 1846 1868 C2' A B 33 OK 1870 1866 1869 1890 C2' U B 34 OK 1892 1888 1891 1910 C2' A B 35 OK 1912 1908 1911 1932 C2' U B 36 OK 1934 1930 1933 1952 C2' G B 37 OK 1954 1950 1953 1975 C2' G B 38 OK 1977 1973 1976 1998 C2' U B 39 OK 2000 1996 1999 2018 C2' U B 40 OK 2020 2016 2019 2038 C2' U B 41 OK 2040 2036 2039 2058 C2' G B 42 OK 2060 2056 2059 2081 C2' G B 43 OK 2083 2079 2082 2104 C2' G B 44 OK 2106 2102 2105 2127 C2' A B 45 OK 2129 2125 2128 2149 C2' G B 46 OK 2151 2147 2150 2172 C2' U B 47 OK 2174 2170 2173 2192 C2' U B 48 OK 2194 2190 2193 2212 C2' U B 49 OK 2214 2210 2213 2232 C2' C B 50 OK 2234 2230 2233 2252 C2' U B 51 OK 2254 2250 2253 2272 C2' A B 52 OK 2274 2270 2273 2294 C2' C B 53 OK 2296 2292 2295 2314 C2' C B 54 OK 2316 2312 2315 2334 C2' A B 55 OK 2336 2332 2335 2356 C2' A B 56 OK 2358 2354 2357 2378 C2' G B 57 OK 2380 2376 2379 2401 C2' A B 58 OK 2403 2399 2402 2423 C2' G B 59 OK 2425 2421 2424 2446 C2' C B 60 OK 2448 2444 2447 2466 C2' C B 61 OK 2468 2464 2467 2486 C2' U B 62 OK 2488 2484 2487 2506 C2' U B 63 OK 2508 2504 2507 2526 C2' A B 64 OK 2528 2524 2527 2548 C2' A B 65 OK 2550 2546 2549 2570 C2' A B 66 OK 2572 2568 2571 2592 C2' C B 67 OK 2594 2590 2593 2612 C2' U B 68 OK 2614 2610 2613 2632 C2' C B 69 OK 2634 2630 2633 2652 C2' U B 70 OK 2654 2650 2653 2672 C2' U B 71 OK 2674 2670 2673 2692 C2' G B 72 OK 2694 2690 2693 2715 C2' A B 73 OK 2717 2713 2716 2737 C2' U B 74 OK 2739 2735 2738 2757 C2' U B 75 OK 2759 2755 2758 2777 C2' A B 76 OK 2779 2775 2778 2799 C2' U B 77 OK 2801 2797 2800 2819 C2' C B 78 OK 2821 2817 2820 2839 C2' U B 79 OK 2841 2837 2840 2859 C2' U B 80 OK 2861 2857 2860 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 9 C3' G A 13 OK 7 10 11 32 C3' G A 14 OK 30 33 34 55 C3' G A 15 OK 53 56 57 78 C3' A A 16 OK 76 79 80 100 C3' A A 17 OK 98 101 102 122 C3' G A 18 OK 120 123 124 145 C3' A A 19 OK 143 146 147 167 C3' U A 20 OK 165 168 169 231 C3' U A 22 OK 229 232 233 251 C3' A A 23 OK 249 252 253 273 C3' A A 24 OK 271 274 275 295 C3' U A 25 OK 293 296 297 315 C3' C A 26 OK 313 316 317 335 C3' C A 27 OK 333 336 337 355 C3' U A 28 OK 353 356 357 375 C3' A A 29 OK 373 376 377 397 C3' A A 30 OK 395 398 399 419 C3' U A 31 OK 417 420 421 439 C3' G A 32 OK 437 440 441 462 C3' A A 33 OK 460 463 464 484 C3' U A 34 OK 482 485 486 504 C3' A A 35 OK 502 505 506 526 C3' U A 36 OK 524 527 528 546 C3' G A 37 OK 544 547 548 569 C3' G A 38 OK 567 570 571 592 C3' U A 39 OK 590 593 594 612 C3' U A 40 OK 610 613 614 632 C3' U A 41 OK 630 633 634 652 C3' G A 42 OK 650 653 654 675 C3' G A 43 OK 673 676 677 698 C3' G A 44 OK 696 699 700 721 C3' A A 45 OK 719 722 723 743 C3' G A 46 OK 741 744 745 766 C3' U A 47 OK 764 767 768 826 C3' U A 49 OK 824 827 828 846 C3' C A 50 OK 844 847 848 866 C3' U A 51 OK 864 867 868 886 C3' A A 52 OK 884 887 888 908 C3' C A 53 OK 906 909 910 928 C3' C A 54 OK 926 929 930 948 C3' A A 55 OK 946 949 950 970 C3' A A 56 OK 968 971 972 992 C3' G A 57 OK 990 993 994 1015 C3' A A 58 OK 1013 1016 1017 1037 C3' G A 59 OK 1035 1038 1039 1060 C3' C A 60 OK 1058 1061 1062 1080 C3' C A 61 OK 1078 1081 1082 1100 C3' U A 62 OK 1098 1101 1102 1120 C3' U A 63 OK 1118 1121 1122 1140 C3' A A 64 OK 1138 1141 1142 1162 C3' A A 65 OK 1160 1163 1164 1184 C3' A A 66 OK 1182 1185 1186 1206 C3' C A 67 OK 1204 1207 1208 1226 C3' U A 68 OK 1224 1227 1228 1246 C3' C A 69 OK 1244 1247 1248 1266 C3' U A 70 OK 1264 1267 1268 1286 C3' U A 71 OK 1284 1287 1288 1306 C3' G A 72 OK 1304 1307 1308 1329 C3' A A 73 OK 1327 1330 1331 1351 C3' U A 74 OK 1349 1352 1353 1371 C3' U A 75 OK 1369 1372 1373 1391 C3' A A 76 OK 1389 1392 1393 1413 C3' U A 77 OK 1411 1414 1415 1435 C3' G B 13 OK 1433 1436 1437 1458 C3' G B 14 OK 1456 1459 1460 1481 C3' G B 15 OK 1479 1482 1483 1504 C3' A B 16 OK 1502 1505 1506 1526 C3' A B 17 OK 1524 1527 1528 1548 C3' G B 18 OK 1546 1549 1550 1571 C3' A B 19 OK 1569 1572 1573 1593 C3' U B 20 OK 1591 1594 1595 1613 C3' A B 21 OK 1611 1614 1615 1635 C3' U B 22 OK 1633 1636 1637 1655 C3' A B 23 OK 1653 1656 1657 1677 C3' A B 24 OK 1675 1678 1679 1699 C3' U B 25 OK 1697 1700 1701 1719 C3' C B 26 OK 1717 1720 1721 1739 C3' C B 27 OK 1737 1740 1741 1759 C3' U B 28 OK 1757 1760 1761 1779 C3' A B 29 OK 1777 1780 1781 1801 C3' A B 30 OK 1799 1802 1803 1823 C3' U B 31 OK 1821 1824 1825 1843 C3' G B 32 OK 1841 1844 1845 1866 C3' A B 33 OK 1864 1867 1868 1888 C3' U B 34 OK 1886 1889 1890 1908 C3' A B 35 OK 1906 1909 1910 1930 C3' U B 36 OK 1928 1931 1932 1950 C3' G B 37 OK 1948 1951 1952 1973 C3' G B 38 OK 1971 1974 1975 1996 C3' U B 39 OK 1994 1997 1998 2016 C3' U B 40 OK 2014 2017 2018 2036 C3' U B 41 OK 2034 2037 2038 2056 C3' G B 42 OK 2054 2057 2058 2079 C3' G B 43 OK 2077 2080 2081 2102 C3' G B 44 OK 2100 2103 2104 2125 C3' A B 45 OK 2123 2126 2127 2147 C3' G B 46 OK 2145 2148 2149 2170 C3' U B 47 OK 2168 2171 2172 2190 C3' U B 48 OK 2188 2191 2192 2210 C3' U B 49 OK 2208 2211 2212 2230 C3' C B 50 OK 2228 2231 2232 2250 C3' U B 51 OK 2248 2251 2252 2270 C3' A B 52 OK 2268 2271 2272 2292 C3' C B 53 OK 2290 2293 2294 2312 C3' C B 54 OK 2310 2313 2314 2332 C3' A B 55 OK 2330 2333 2334 2354 C3' A B 56 OK 2352 2355 2356 2376 C3' G B 57 OK 2374 2377 2378 2399 C3' A B 58 OK 2397 2400 2401 2421 C3' G B 59 OK 2419 2422 2423 2444 C3' C B 60 OK 2442 2445 2446 2464 C3' C B 61 OK 2462 2465 2466 2484 C3' U B 62 OK 2482 2485 2486 2504 C3' U B 63 OK 2502 2505 2506 2524 C3' A B 64 OK 2522 2525 2526 2546 C3' A B 65 OK 2544 2547 2548 2568 C3' A B 66 OK 2566 2569 2570 2590 C3' C B 67 OK 2588 2591 2592 2610 C3' U B 68 OK 2608 2611 2612 2630 C3' C B 69 OK 2628 2631 2632 2650 C3' U B 70 OK 2648 2651 2652 2670 C3' U B 71 OK 2668 2671 2672 2690 C3' G B 72 OK 2688 2691 2692 2713 C3' A B 73 OK 2711 2714 2715 2735 C3' U B 74 OK 2733 2736 2737 2755 C3' U B 75 OK 2753 2756 2757 2775 C3' A B 76 OK 2773 2776 2777 2797 C3' U B 77 OK 2795 2798 2799 2817 C3' C B 78 OK 2815 2818 2819 2837 C3' U B 79 OK 2835 2838 2839 2857 C3' U B 80 OK 2855 2858 2859 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 7 C4' G A 13 OK 9 6 8 30 C4' G A 14 OK 32 29 31 53 C4' G A 15 OK 55 52 54 76 C4' A A 16 OK 78 75 77 98 C4' A A 17 OK 100 97 99 120 C4' G A 18 OK 122 119 121 143 C4' A A 19 OK 145 142 144 165 C4' U A 20 OK 167 164 166 229 C4' U A 22 OK 231 228 230 249 C4' A A 23 OK 251 248 250 271 C4' A A 24 OK 273 270 272 293 C4' U A 25 OK 295 292 294 313 C4' C A 26 OK 315 312 314 333 C4' C A 27 OK 335 332 334 353 C4' U A 28 OK 355 352 354 373 C4' A A 29 OK 375 372 374 395 C4' A A 30 OK 397 394 396 417 C4' U A 31 OK 419 416 418 437 C4' G A 32 OK 439 436 438 460 C4' A A 33 OK 462 459 461 482 C4' U A 34 OK 484 481 483 502 C4' A A 35 OK 504 501 503 524 C4' U A 36 OK 526 523 525 544 C4' G A 37 OK 546 543 545 567 C4' G A 38 OK 569 566 568 590 C4' U A 39 OK 592 589 591 610 C4' U A 40 OK 612 609 611 630 C4' U A 41 OK 632 629 631 650 C4' G A 42 OK 652 649 651 673 C4' G A 43 OK 675 672 674 696 C4' G A 44 OK 698 695 697 719 C4' A A 45 OK 721 718 720 741 C4' G A 46 OK 743 740 742 764 C4' U A 47 OK 766 763 765 824 C4' U A 49 OK 826 823 825 844 C4' C A 50 OK 846 843 845 864 C4' U A 51 OK 866 863 865 884 C4' A A 52 OK 886 883 885 906 C4' C A 53 OK 908 905 907 926 C4' C A 54 OK 928 925 927 946 C4' A A 55 OK 948 945 947 968 C4' A A 56 OK 970 967 969 990 C4' G A 57 OK 992 989 991 1013 C4' A A 58 OK 1015 1012 1014 1035 C4' G A 59 OK 1037 1034 1036 1058 C4' C A 60 OK 1060 1057 1059 1078 C4' C A 61 OK 1080 1077 1079 1098 C4' U A 62 OK 1100 1097 1099 1118 C4' U A 63 OK 1120 1117 1119 1138 C4' A A 64 OK 1140 1137 1139 1160 C4' A A 65 OK 1162 1159 1161 1182 C4' A A 66 OK 1184 1181 1183 1204 C4' C A 67 OK 1206 1203 1205 1224 C4' U A 68 OK 1226 1223 1225 1244 C4' C A 69 OK 1246 1243 1245 1264 C4' U A 70 OK 1266 1263 1265 1284 C4' U A 71 OK 1286 1283 1285 1304 C4' G A 72 OK 1306 1303 1305 1327 C4' A A 73 OK 1329 1326 1328 1349 C4' U A 74 OK 1351 1348 1350 1369 C4' U A 75 OK 1371 1368 1370 1389 C4' A A 76 OK 1391 1388 1390 1411 C4' U A 77 OK 1413 1410 1412 1433 C4' G B 13 OK 1435 1432 1434 1456 C4' G B 14 OK 1458 1455 1457 1479 C4' G B 15 OK 1481 1478 1480 1502 C4' A B 16 OK 1504 1501 1503 1524 C4' A B 17 OK 1526 1523 1525 1546 C4' G B 18 OK 1548 1545 1547 1569 C4' A B 19 OK 1571 1568 1570 1591 C4' U B 20 OK 1593 1590 1592 1611 C4' A B 21 OK 1613 1610 1612 1633 C4' U B 22 OK 1635 1632 1634 1653 C4' A B 23 OK 1655 1652 1654 1675 C4' A B 24 OK 1677 1674 1676 1697 C4' U B 25 OK 1699 1696 1698 1717 C4' C B 26 OK 1719 1716 1718 1737 C4' C B 27 OK 1739 1736 1738 1757 C4' U B 28 OK 1759 1756 1758 1777 C4' A B 29 OK 1779 1776 1778 1799 C4' A B 30 OK 1801 1798 1800 1821 C4' U B 31 OK 1823 1820 1822 1841 C4' G B 32 OK 1843 1840 1842 1864 C4' A B 33 OK 1866 1863 1865 1886 C4' U B 34 OK 1888 1885 1887 1906 C4' A B 35 OK 1908 1905 1907 1928 C4' U B 36 OK 1930 1927 1929 1948 C4' G B 37 OK 1950 1947 1949 1971 C4' G B 38 OK 1973 1970 1972 1994 C4' U B 39 OK 1996 1993 1995 2014 C4' U B 40 OK 2016 2013 2015 2034 C4' U B 41 OK 2036 2033 2035 2054 C4' G B 42 OK 2056 2053 2055 2077 C4' G B 43 OK 2079 2076 2078 2100 C4' G B 44 OK 2102 2099 2101 2123 C4' A B 45 OK 2125 2122 2124 2145 C4' G B 46 OK 2147 2144 2146 2168 C4' U B 47 OK 2170 2167 2169 2188 C4' U B 48 OK 2190 2187 2189 2208 C4' U B 49 OK 2210 2207 2209 2228 C4' C B 50 OK 2230 2227 2229 2248 C4' U B 51 OK 2250 2247 2249 2268 C4' A B 52 OK 2270 2267 2269 2290 C4' C B 53 OK 2292 2289 2291 2310 C4' C B 54 OK 2312 2309 2311 2330 C4' A B 55 OK 2332 2329 2331 2352 C4' A B 56 OK 2354 2351 2353 2374 C4' G B 57 OK 2376 2373 2375 2397 C4' A B 58 OK 2399 2396 2398 2419 C4' G B 59 OK 2421 2418 2420 2442 C4' C B 60 OK 2444 2441 2443 2462 C4' C B 61 OK 2464 2461 2463 2482 C4' U B 62 OK 2484 2481 2483 2502 C4' U B 63 OK 2504 2501 2503 2522 C4' A B 64 OK 2524 2521 2523 2544 C4' A B 65 OK 2546 2543 2545 2566 C4' A B 66 OK 2568 2565 2567 2588 C4' C B 67 OK 2590 2587 2589 2608 C4' U B 68 OK 2610 2607 2609 2628 C4' C B 69 OK 2630 2627 2629 2648 C4' U B 70 OK 2650 2647 2649 2668 C4' U B 71 OK 2670 2667 2669 2688 C4' G B 72 OK 2690 2687 2689 2711 C4' A B 73 OK 2713 2710 2712 2733 C4' U B 74 OK 2735 2732 2734 2753 C4' U B 75 OK 2755 2752 2754 2773 C4' A B 76 OK 2775 2772 2774 2795 C4' U B 77 OK 2797 2794 2796 2815 C4' C B 78 OK 2817 2814 2816 2835 C4' U B 79 OK 2837 2834 2836 2855 C4' U B 80 OK 2857 2854 2856 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 6 C5' G A 13 5 7 29 C5' G A 14 28 30 52 C5' G A 15 51 53 75 C5' A A 16 74 76 97 C5' A A 17 96 98 119 C5' G A 18 118 120 142 C5' A A 19 141 143 164 C5' U A 20 163 165 228 C5' U A 22 227 229 248 C5' A A 23 247 249 270 C5' A A 24 269 271 292 C5' U A 25 291 293 312 C5' C A 26 311 313 332 C5' C A 27 331 333 352 C5' U A 28 351 353 372 C5' A A 29 371 373 394 C5' A A 30 393 395 416 C5' U A 31 415 417 436 C5' G A 32 435 437 459 C5' A A 33 458 460 481 C5' U A 34 480 482 501 C5' A A 35 500 502 523 C5' U A 36 522 524 543 C5' G A 37 542 544 566 C5' G A 38 565 567 589 C5' U A 39 588 590 609 C5' U A 40 608 610 629 C5' U A 41 628 630 649 C5' G A 42 648 650 672 C5' G A 43 671 673 695 C5' G A 44 694 696 718 C5' A A 45 717 719 740 C5' G A 46 739 741 763 C5' U A 47 762 764 823 C5' U A 49 822 824 843 C5' C A 50 842 844 863 C5' U A 51 862 864 883 C5' A A 52 882 884 905 C5' C A 53 904 906 925 C5' C A 54 924 926 945 C5' A A 55 944 946 967 C5' A A 56 966 968 989 C5' G A 57 988 990 1012 C5' A A 58 1011 1013 1034 C5' G A 59 1033 1035 1057 C5' C A 60 1056 1058 1077 C5' C A 61 1076 1078 1097 C5' U A 62 1096 1098 1117 C5' U A 63 1116 1118 1137 C5' A A 64 1136 1138 1159 C5' A A 65 1158 1160 1181 C5' A A 66 1180 1182 1203 C5' C A 67 1202 1204 1223 C5' U A 68 1222 1224 1243 C5' C A 69 1242 1244 1263 C5' U A 70 1262 1264 1283 C5' U A 71 1282 1284 1303 C5' G A 72 1302 1304 1326 C5' A A 73 1325 1327 1348 C5' U A 74 1347 1349 1368 C5' U A 75 1367 1369 1388 C5' A A 76 1387 1389 1410 C5' U A 77 1409 1411 1432 C5' G B 13 1431 1433 1455 C5' G B 14 1454 1456 1478 C5' G B 15 1477 1479 1501 C5' A B 16 1500 1502 1523 C5' A B 17 1522 1524 1545 C5' G B 18 1544 1546 1568 C5' A B 19 1567 1569 1590 C5' U B 20 1589 1591 1610 C5' A B 21 1609 1611 1632 C5' U B 22 1631 1633 1652 C5' A B 23 1651 1653 1674 C5' A B 24 1673 1675 1696 C5' U B 25 1695 1697 1716 C5' C B 26 1715 1717 1736 C5' C B 27 1735 1737 1756 C5' U B 28 1755 1757 1776 C5' A B 29 1775 1777 1798 C5' A B 30 1797 1799 1820 C5' U B 31 1819 1821 1840 C5' G B 32 1839 1841 1863 C5' A B 33 1862 1864 1885 C5' U B 34 1884 1886 1905 C5' A B 35 1904 1906 1927 C5' U B 36 1926 1928 1947 C5' G B 37 1946 1948 1970 C5' G B 38 1969 1971 1993 C5' U B 39 1992 1994 2013 C5' U B 40 2012 2014 2033 C5' U B 41 2032 2034 2053 C5' G B 42 2052 2054 2076 C5' G B 43 2075 2077 2099 C5' G B 44 2098 2100 2122 C5' A B 45 2121 2123 2144 C5' G B 46 2143 2145 2167 C5' U B 47 2166 2168 2187 C5' U B 48 2186 2188 2207 C5' U B 49 2206 2208 2227 C5' C B 50 2226 2228 2247 C5' U B 51 2246 2248 2267 C5' A B 52 2266 2268 2289 C5' C B 53 2288 2290 2309 C5' C B 54 2308 2310 2329 C5' A B 55 2328 2330 2351 C5' A B 56 2350 2352 2373 C5' G B 57 2372 2374 2396 C5' A B 58 2395 2397 2418 C5' G B 59 2417 2419 2441 C5' C B 60 2440 2442 2461 C5' C B 61 2460 2462 2481 C5' U B 62 2480 2482 2501 C5' U B 63 2500 2502 2521 C5' A B 64 2520 2522 2543 C5' A B 65 2542 2544 2565 C5' A B 66 2564 2566 2587 C5' C B 67 2586 2588 2607 C5' U B 68 2606 2608 2627 C5' C B 69 2626 2628 2647 C5' U B 70 2646 2648 2667 C5' U B 71 2666 2668 2687 C5' G B 72 2686 2688 2710 C5' A B 73 2709 2711 2732 C5' U B 74 2731 2733 2752 C5' U B 75 2751 2753 2772 C5' A B 76 2771 2773 2794 C5' U B 77 2793 2795 2814 C5' C B 78 2813 2815 2834 C5' U B 79 2833 2835 2854 C5' U B 80 2853 2855 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 2 P G A 13 OK OK 3 4 5 25 P G A 14 distorted distorted 10 26 27 28 48 P G A 15 distorted distorted 33 49 50 51 71 P A A 16 distorted distorted 56 72 73 74 93 P A A 17 distorted distorted 79 94 95 96 115 P G A 18 distorted distorted 101 116 117 118 138 P A A 19 distorted distorted 123 139 140 141 160 P U A 20 distorted distorted 146 161 162 163 180 P A A 21 168 181 P A A 21 168 224 P U A 22 distorted distorted 225 226 227 244 P A A 23 distorted distorted 232 245 246 247 266 P A A 24 distorted distorted 252 267 268 269 288 P U A 25 distorted distorted 274 289 290 291 308 P C A 26 distorted distorted 296 309 310 311 328 P C A 27 distorted distorted 316 329 330 331 348 P U A 28 distorted distorted 336 349 350 351 368 P A A 29 distorted distorted 356 369 370 371 390 P A A 30 distorted distorted 376 391 392 393 412 P U A 31 distorted distorted 398 413 414 415 432 P G A 32 distorted distorted 420 433 434 435 455 P A A 33 distorted distorted 440 456 457 458 477 P U A 34 distorted distorted 463 478 479 480 497 P A A 35 distorted distorted 485 498 499 500 519 P U A 36 distorted distorted 505 520 521 522 539 P G A 37 distorted distorted 527 540 541 542 562 P G A 38 distorted distorted 547 563 564 565 585 P U A 39 distorted distorted 570 586 587 588 605 P U A 40 distorted distorted 593 606 607 608 625 P U A 41 distorted distorted 613 626 627 628 645 P G A 42 distorted distorted 633 646 647 648 668 P G A 43 distorted distorted 653 669 670 671 691 P G A 44 distorted distorted 676 692 693 694 714 P A A 45 distorted distorted 699 715 716 717 736 P G A 46 distorted distorted 722 737 738 739 759 P U A 47 distorted distorted 744 760 761 762 779 P U A 48 767 780 P U A 48 767 819 P U A 49 distorted distorted 820 821 822 839 P C A 50 distorted distorted 827 840 841 842 859 P U A 51 distorted distorted 847 860 861 862 879 P A A 52 distorted distorted 867 880 881 882 901 P C A 53 distorted distorted 887 902 903 904 921 P C A 54 distorted distorted 909 922 923 924 941 P A A 55 distorted distorted 929 942 943 944 963 P A A 56 distorted distorted 949 964 965 966 985 P G A 57 distorted distorted 971 986 987 988 1008 P A A 58 distorted distorted 993 1009 1010 1011 1030 P G A 59 distorted distorted 1016 1031 1032 1033 1053 P C A 60 distorted distorted 1038 1054 1055 1056 1073 P C A 61 distorted distorted 1061 1074 1075 1076 1093 P U A 62 distorted distorted 1081 1094 1095 1096 1113 P U A 63 distorted distorted 1101 1114 1115 1116 1133 P A A 64 distorted distorted 1121 1134 1135 1136 1155 P A A 65 distorted distorted 1141 1156 1157 1158 1177 P A A 66 distorted distorted 1163 1178 1179 1180 1199 P C A 67 distorted distorted 1185 1200 1201 1202 1219 P U A 68 distorted distorted 1207 1220 1221 1222 1239 P C A 69 distorted distorted 1227 1240 1241 1242 1259 P U A 70 distorted distorted 1247 1260 1261 1262 1279 P U A 71 distorted distorted 1267 1280 1281 1282 1299 P G A 72 distorted distorted 1287 1300 1301 1302 1322 P A A 73 distorted distorted 1307 1323 1324 1325 1344 P U A 74 distorted distorted 1330 1345 1346 1347 1364 P U A 75 distorted distorted 1352 1365 1366 1367 1384 P A A 76 distorted distorted 1372 1385 1386 1387 1406 P U A 77 distorted distorted 1392 1407 1408 1409 1428 P G B 13 OK OK 1429 1430 1431 1451 P G B 14 distorted distorted 1436 1452 1453 1454 1474 P G B 15 distorted distorted 1459 1475 1476 1477 1497 P A B 16 distorted distorted 1482 1498 1499 1500 1519 P A B 17 distorted distorted 1505 1520 1521 1522 1541 P G B 18 distorted distorted 1527 1542 1543 1544 1564 P A B 19 distorted distorted 1549 1565 1566 1567 1586 P U B 20 distorted distorted 1572 1587 1588 1589 1606 P A B 21 distorted distorted 1594 1607 1608 1609 1628 P U B 22 distorted distorted 1614 1629 1630 1631 1648 P A B 23 distorted distorted 1636 1649 1650 1651 1670 P A B 24 distorted distorted 1656 1671 1672 1673 1692 P U B 25 distorted distorted 1678 1693 1694 1695 1712 P C B 26 distorted distorted 1700 1713 1714 1715 1732 P C B 27 distorted distorted 1720 1733 1734 1735 1752 P U B 28 distorted distorted 1740 1753 1754 1755 1772 P A B 29 distorted distorted 1760 1773 1774 1775 1794 P A B 30 distorted distorted 1780 1795 1796 1797 1816 P U B 31 distorted distorted 1802 1817 1818 1819 1836 P G B 32 distorted distorted 1824 1837 1838 1839 1859 P A B 33 distorted distorted 1844 1860 1861 1862 1881 P U B 34 distorted distorted 1867 1882 1883 1884 1901 P A B 35 distorted distorted 1889 1902 1903 1904 1923 P U B 36 distorted distorted 1909 1924 1925 1926 1943 P G B 37 distorted distorted 1931 1944 1945 1946 1966 P G B 38 distorted distorted 1951 1967 1968 1969 1989 P U B 39 distorted distorted 1974 1990 1991 1992 2009 P U B 40 distorted distorted 1997 2010 2011 2012 2029 P U B 41 distorted distorted 2017 2030 2031 2032 2049 P G B 42 distorted distorted 2037 2050 2051 2052 2072 P G B 43 distorted distorted 2057 2073 2074 2075 2095 P G B 44 distorted distorted 2080 2096 2097 2098 2118 P A B 45 distorted distorted 2103 2119 2120 2121 2140 P G B 46 distorted distorted 2126 2141 2142 2143 2163 P U B 47 distorted distorted 2148 2164 2165 2166 2183 P U B 48 distorted distorted 2171 2184 2185 2186 2203 P U B 49 distorted distorted 2191 2204 2205 2206 2223 P C B 50 distorted distorted 2211 2224 2225 2226 2243 P U B 51 distorted distorted 2231 2244 2245 2246 2263 P A B 52 distorted distorted 2251 2264 2265 2266 2285 P C B 53 distorted distorted 2271 2286 2287 2288 2305 P C B 54 distorted distorted 2293 2306 2307 2308 2325 P A B 55 distorted distorted 2313 2326 2327 2328 2347 P A B 56 distorted distorted 2333 2348 2349 2350 2369 P G B 57 distorted distorted 2355 2370 2371 2372 2392 P A B 58 distorted distorted 2377 2393 2394 2395 2414 P G B 59 distorted distorted 2400 2415 2416 2417 2437 P C B 60 distorted distorted 2422 2438 2439 2440 2457 P C B 61 distorted distorted 2445 2458 2459 2460 2477 P U B 62 distorted distorted 2465 2478 2479 2480 2497 P U B 63 distorted distorted 2485 2498 2499 2500 2517 P A B 64 distorted distorted 2505 2518 2519 2520 2539 P A B 65 distorted distorted 2525 2540 2541 2542 2561 P A B 66 distorted distorted 2547 2562 2563 2564 2583 P C B 67 distorted distorted 2569 2584 2585 2586 2603 P U B 68 distorted distorted 2591 2604 2605 2606 2623 P C B 69 distorted distorted 2611 2624 2625 2626 2643 P U B 70 distorted distorted 2631 2644 2645 2646 2663 P U B 71 distorted distorted 2651 2664 2665 2666 2683 P G B 72 distorted distorted 2671 2684 2685 2686 2706 P A B 73 distorted distorted 2691 2707 2708 2709 2728 P U B 74 distorted distorted 2714 2729 2730 2731 2748 P U B 75 distorted distorted 2736 2749 2750 2751 2768 P A B 76 distorted distorted 2756 2769 2770 2771 2790 P U B 77 distorted distorted 2776 2791 2792 2793 2810 P C B 78 distorted distorted 2798 2811 2812 2813 2830 P U B 79 distorted distorted 2818 2831 2832 2833 2850 P U B 80 distorted distorted 2838 2851 2852 2853 ---------------------------------------------------------------------------------