ID code: '5HNQ' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 9 C1' G A 1 beta 4 10 7 32 C1' U A 2 beta 27 33 30 52 C1' A A 3 beta 47 53 50 72 C1' RSQ A 4 beta 80 64 74 96 C1' G A 5 beta 91 97 94 119 C1' U A 6 beta 114 120 117 139 C1' A A 7 beta 134 140 137 161 C1' C A 8 beta 156 162 159 179 C1' G B 1 beta 174 180 177 202 C1' U B 2 beta 197 203 200 222 C1' A B 3 beta 217 223 220 242 C1' RSQ B 4 beta 250 234 244 266 C1' G B 5 beta 261 267 264 289 C1' U B 6 beta 284 290 287 309 C1' A B 7 beta 304 310 307 331 C1' C B 8 beta 326 332 329 349 C1' G C 1 beta 344 350 347 372 C1' U C 2 beta 367 373 370 392 C1' A C 3 beta 387 393 390 412 C1' RSQ C 4 beta 420 404 414 436 C1' G C 5 beta 431 437 434 459 C1' U C 6 beta 454 460 457 479 C1' A C 7 beta 474 480 477 501 C1' C C 8 beta 496 502 499 519 C1' G D 1 beta 514 520 517 542 C1' U D 2 beta 537 543 540 562 C1' A D 3 beta 557 563 560 582 C1' RSQ D 4 beta 590 574 584 606 C1' G D 5 beta 601 607 604 629 C1' U D 6 beta 624 630 627 649 C1' A D 7 beta 644 650 647 671 C1' C D 8 beta 666 672 669 689 C1' G E 1 beta 684 690 687 712 C1' U E 2 beta 707 713 710 732 C1' A E 3 beta 727 733 730 752 C1' RSQ E 4 beta 760 744 754 776 C1' G E 5 beta 771 777 774 799 C1' U E 6 beta 794 800 797 819 C1' A E 7 beta 814 820 817 841 C1' C E 8 beta 836 842 839 859 C1' G F 1 beta 854 860 857 882 C1' U F 2 beta 877 883 880 902 C1' A F 3 beta 897 903 900 922 C1' RSQ F 4 beta 930 914 924 946 C1' G F 5 beta 941 947 944 969 C1' U F 6 beta 964 970 967 989 C1' A F 7 beta 984 990 987 1011 C1' C F 8 beta 1006 1012 1009 1029 C1' G G 1 beta 1024 1030 1027 1052 C1' U G 2 beta 1047 1053 1050 1072 C1' A G 3 beta 1067 1073 1070 1092 C1' RSQ G 4 beta 1100 1084 1094 1116 C1' G G 5 beta 1111 1117 1114 1139 C1' U G 6 beta 1134 1140 1137 1159 C1' A G 7 beta 1154 1160 1157 1181 C1' C G 8 beta 1176 1182 1179 1199 C1' G H 1 beta 1194 1200 1197 1222 C1' U H 2 beta 1217 1223 1220 1242 C1' A H 3 beta 1237 1243 1240 1262 C1' RSQ H 4 beta 1270 1254 1264 1286 C1' G H 5 beta 1281 1287 1284 1309 C1' U H 6 beta 1304 1310 1307 1329 C1' A H 7 beta 1324 1330 1327 1351 C1' C H 8 beta 1346 1352 1349 1369 C1' G I 1 beta 1364 1370 1367 1392 C1' U I 2 beta 1387 1393 1390 1412 C1' A I 3 beta 1407 1413 1410 1432 C1' RSQ I 4 beta 1440 1424 1434 1456 C1' G I 5 beta 1451 1457 1454 1479 C1' U I 6 beta 1474 1480 1477 1499 C1' A I 7 beta 1494 1500 1497 1521 C1' C I 8 beta 1516 1522 1519 1539 C1' G J 1 beta 1534 1540 1537 1562 C1' U J 2 beta 1557 1563 1560 1582 C1' A J 3 beta 1577 1583 1580 1602 C1' RSQ J 4 beta 1610 1594 1604 1626 C1' G J 5 beta 1621 1627 1624 1649 C1' U J 6 beta 1644 1650 1647 1669 C1' A J 7 beta 1664 1670 1667 1691 C1' C J 8 beta 1686 1692 1689 1709 C1' G K 1 beta 1704 1710 1707 1732 C1' U K 2 beta 1727 1733 1730 1752 C1' A K 3 beta 1747 1753 1750 1772 C1' RSQ K 4 beta 1780 1764 1774 1796 C1' G K 5 beta 1791 1797 1794 1819 C1' U K 6 beta 1814 1820 1817 1839 C1' A K 7 beta 1834 1840 1837 1861 C1' C K 8 beta 1856 1862 1859 1879 C1' G L 1 beta 1874 1880 1877 1902 C1' U L 2 beta 1897 1903 1900 1922 C1' A L 3 beta 1917 1923 1920 1942 C1' RSQ L 4 beta 1950 1934 1944 1966 C1' G L 5 beta 1961 1967 1964 1989 C1' U L 6 beta 1984 1990 1987 2009 C1' A L 7 beta 2004 2010 2007 2031 C1' C L 8 beta 2026 2032 2029 2049 C1' G M 1 beta 2044 2050 2047 2072 C1' U M 2 beta 2067 2073 2070 2092 C1' A M 3 beta 2087 2093 2090 2112 C1' RSQ M 4 beta 2120 2104 2114 2136 C1' G M 5 beta 2131 2137 2134 2159 C1' U M 6 beta 2154 2160 2157 2179 C1' A M 7 beta 2174 2180 2177 2201 C1' C M 8 beta 2196 2202 2199 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 7 C2' G A 1 OK 9 5 8 30 C2' U A 2 OK 32 28 31 50 C2' A A 3 OK 52 48 51 74 C2' RSQ A 4 OK 72 76 75 94 C2' G A 5 OK 96 92 95 117 C2' U A 6 OK 119 115 118 137 C2' A A 7 OK 139 135 138 159 C2' C A 8 OK 161 157 160 177 C2' G B 1 OK 179 175 178 200 C2' U B 2 OK 202 198 201 220 C2' A B 3 OK 222 218 221 244 C2' RSQ B 4 OK 242 246 245 264 C2' G B 5 OK 266 262 265 287 C2' U B 6 OK 289 285 288 307 C2' A B 7 OK 309 305 308 329 C2' C B 8 OK 331 327 330 347 C2' G C 1 OK 349 345 348 370 C2' U C 2 OK 372 368 371 390 C2' A C 3 OK 392 388 391 414 C2' RSQ C 4 OK 412 416 415 434 C2' G C 5 OK 436 432 435 457 C2' U C 6 OK 459 455 458 477 C2' A C 7 OK 479 475 478 499 C2' C C 8 OK 501 497 500 517 C2' G D 1 OK 519 515 518 540 C2' U D 2 OK 542 538 541 560 C2' A D 3 OK 562 558 561 584 C2' RSQ D 4 OK 582 586 585 604 C2' G D 5 OK 606 602 605 627 C2' U D 6 OK 629 625 628 647 C2' A D 7 OK 649 645 648 669 C2' C D 8 OK 671 667 670 687 C2' G E 1 OK 689 685 688 710 C2' U E 2 OK 712 708 711 730 C2' A E 3 OK 732 728 731 754 C2' RSQ E 4 OK 752 756 755 774 C2' G E 5 OK 776 772 775 797 C2' U E 6 OK 799 795 798 817 C2' A E 7 OK 819 815 818 839 C2' C E 8 OK 841 837 840 857 C2' G F 1 OK 859 855 858 880 C2' U F 2 OK 882 878 881 900 C2' A F 3 OK 902 898 901 924 C2' RSQ F 4 OK 922 926 925 944 C2' G F 5 OK 946 942 945 967 C2' U F 6 OK 969 965 968 987 C2' A F 7 OK 989 985 988 1009 C2' C F 8 OK 1011 1007 1010 1027 C2' G G 1 OK 1029 1025 1028 1050 C2' U G 2 OK 1052 1048 1051 1070 C2' A G 3 OK 1072 1068 1071 1094 C2' RSQ G 4 OK 1092 1096 1095 1114 C2' G G 5 OK 1116 1112 1115 1137 C2' U G 6 OK 1139 1135 1138 1157 C2' A G 7 OK 1159 1155 1158 1179 C2' C G 8 OK 1181 1177 1180 1197 C2' G H 1 OK 1199 1195 1198 1220 C2' U H 2 OK 1222 1218 1221 1240 C2' A H 3 OK 1242 1238 1241 1264 C2' RSQ H 4 OK 1262 1266 1265 1284 C2' G H 5 OK 1286 1282 1285 1307 C2' U H 6 OK 1309 1305 1308 1327 C2' A H 7 OK 1329 1325 1328 1349 C2' C H 8 OK 1351 1347 1350 1367 C2' G I 1 OK 1369 1365 1368 1390 C2' U I 2 OK 1392 1388 1391 1410 C2' A I 3 OK 1412 1408 1411 1434 C2' RSQ I 4 OK 1432 1436 1435 1454 C2' G I 5 OK 1456 1452 1455 1477 C2' U I 6 OK 1479 1475 1478 1497 C2' A I 7 OK 1499 1495 1498 1519 C2' C I 8 OK 1521 1517 1520 1537 C2' G J 1 OK 1539 1535 1538 1560 C2' U J 2 OK 1562 1558 1561 1580 C2' A J 3 OK 1582 1578 1581 1604 C2' RSQ J 4 OK 1602 1606 1605 1624 C2' G J 5 OK 1626 1622 1625 1647 C2' U J 6 OK 1649 1645 1648 1667 C2' A J 7 OK 1669 1665 1668 1689 C2' C J 8 OK 1691 1687 1690 1707 C2' G K 1 OK 1709 1705 1708 1730 C2' U K 2 OK 1732 1728 1731 1750 C2' A K 3 OK 1752 1748 1751 1774 C2' RSQ K 4 OK 1772 1776 1775 1794 C2' G K 5 OK 1796 1792 1795 1817 C2' U K 6 OK 1819 1815 1818 1837 C2' A K 7 OK 1839 1835 1838 1859 C2' C K 8 OK 1861 1857 1860 1877 C2' G L 1 OK 1879 1875 1878 1900 C2' U L 2 OK 1902 1898 1901 1920 C2' A L 3 OK 1922 1918 1921 1944 C2' RSQ L 4 OK 1942 1946 1945 1964 C2' G L 5 OK 1966 1962 1965 1987 C2' U L 6 OK 1989 1985 1988 2007 C2' A L 7 OK 2009 2005 2008 2029 C2' C L 8 OK 2031 2027 2030 2047 C2' G M 1 OK 2049 2045 2048 2070 C2' U M 2 OK 2072 2068 2071 2090 C2' A M 3 OK 2092 2088 2091 2114 C2' RSQ M 4 OK 2112 2116 2115 2134 C2' G M 5 OK 2136 2132 2135 2157 C2' U M 6 OK 2159 2155 2158 2177 C2' A M 7 OK 2179 2175 2178 2199 C2' C M 8 OK 2201 2197 2200 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 5 C3' G A 1 OK 3 6 7 28 C3' U A 2 OK 26 29 30 48 C3' A A 3 OK 46 49 50 76 C3' RSQ A 4 OK 79 77 74 92 C3' G A 5 OK 90 93 94 115 C3' U A 6 OK 113 116 117 135 C3' A A 7 OK 133 136 137 157 C3' C A 8 OK 155 158 159 175 C3' G B 1 OK 173 176 177 198 C3' U B 2 OK 196 199 200 218 C3' A B 3 OK 216 219 220 246 C3' RSQ B 4 OK 249 247 244 262 C3' G B 5 OK 260 263 264 285 C3' U B 6 OK 283 286 287 305 C3' A B 7 OK 303 306 307 327 C3' C B 8 OK 325 328 329 345 C3' G C 1 OK 343 346 347 368 C3' U C 2 OK 366 369 370 388 C3' A C 3 OK 386 389 390 416 C3' RSQ C 4 OK 419 417 414 432 C3' G C 5 OK 430 433 434 455 C3' U C 6 OK 453 456 457 475 C3' A C 7 OK 473 476 477 497 C3' C C 8 OK 495 498 499 515 C3' G D 1 OK 513 516 517 538 C3' U D 2 OK 536 539 540 558 C3' A D 3 OK 556 559 560 586 C3' RSQ D 4 OK 589 587 584 602 C3' G D 5 OK 600 603 604 625 C3' U D 6 OK 623 626 627 645 C3' A D 7 OK 643 646 647 667 C3' C D 8 OK 665 668 669 685 C3' G E 1 OK 683 686 687 708 C3' U E 2 OK 706 709 710 728 C3' A E 3 OK 726 729 730 756 C3' RSQ E 4 OK 759 757 754 772 C3' G E 5 OK 770 773 774 795 C3' U E 6 OK 793 796 797 815 C3' A E 7 OK 813 816 817 837 C3' C E 8 OK 835 838 839 855 C3' G F 1 OK 853 856 857 878 C3' U F 2 OK 876 879 880 898 C3' A F 3 OK 896 899 900 926 C3' RSQ F 4 OK 929 927 924 942 C3' G F 5 OK 940 943 944 965 C3' U F 6 OK 963 966 967 985 C3' A F 7 OK 983 986 987 1007 C3' C F 8 OK 1005 1008 1009 1025 C3' G G 1 OK 1023 1026 1027 1048 C3' U G 2 OK 1046 1049 1050 1068 C3' A G 3 OK 1066 1069 1070 1096 C3' RSQ G 4 OK 1099 1097 1094 1112 C3' G G 5 OK 1110 1113 1114 1135 C3' U G 6 OK 1133 1136 1137 1155 C3' A G 7 OK 1153 1156 1157 1177 C3' C G 8 OK 1175 1178 1179 1195 C3' G H 1 OK 1193 1196 1197 1218 C3' U H 2 OK 1216 1219 1220 1238 C3' A H 3 OK 1236 1239 1240 1266 C3' RSQ H 4 OK 1269 1267 1264 1282 C3' G H 5 OK 1280 1283 1284 1305 C3' U H 6 OK 1303 1306 1307 1325 C3' A H 7 OK 1323 1326 1327 1347 C3' C H 8 OK 1345 1348 1349 1365 C3' G I 1 OK 1363 1366 1367 1388 C3' U I 2 OK 1386 1389 1390 1408 C3' A I 3 OK 1406 1409 1410 1436 C3' RSQ I 4 OK 1439 1437 1434 1452 C3' G I 5 OK 1450 1453 1454 1475 C3' U I 6 OK 1473 1476 1477 1495 C3' A I 7 OK 1493 1496 1497 1517 C3' C I 8 OK 1515 1518 1519 1535 C3' G J 1 OK 1533 1536 1537 1558 C3' U J 2 OK 1556 1559 1560 1578 C3' A J 3 OK 1576 1579 1580 1606 C3' RSQ J 4 OK 1609 1607 1604 1622 C3' G J 5 OK 1620 1623 1624 1645 C3' U J 6 OK 1643 1646 1647 1665 C3' A J 7 OK 1663 1666 1667 1687 C3' C J 8 OK 1685 1688 1689 1705 C3' G K 1 OK 1703 1706 1707 1728 C3' U K 2 OK 1726 1729 1730 1748 C3' A K 3 OK 1746 1749 1750 1776 C3' RSQ K 4 OK 1779 1777 1774 1792 C3' G K 5 OK 1790 1793 1794 1815 C3' U K 6 OK 1813 1816 1817 1835 C3' A K 7 OK 1833 1836 1837 1857 C3' C K 8 OK 1855 1858 1859 1875 C3' G L 1 OK 1873 1876 1877 1898 C3' U L 2 OK 1896 1899 1900 1918 C3' A L 3 OK 1916 1919 1920 1946 C3' RSQ L 4 OK 1949 1947 1944 1962 C3' G L 5 OK 1960 1963 1964 1985 C3' U L 6 OK 1983 1986 1987 2005 C3' A L 7 OK 2003 2006 2007 2027 C3' C L 8 OK 2025 2028 2029 2045 C3' G M 1 OK 2043 2046 2047 2068 C3' U M 2 OK 2066 2069 2070 2088 C3' A M 3 OK 2086 2089 2090 2116 C3' RSQ M 4 OK 2119 2117 2114 2132 C3' G M 5 OK 2130 2133 2134 2155 C3' U M 6 OK 2153 2156 2157 2175 C3' A M 7 OK 2173 2176 2177 2197 C3' C M 8 OK 2195 2198 2199 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 3 C4' G A 1 OK 5 2 4 26 C4' U A 2 OK 28 25 27 46 C4' A A 3 OK 48 45 47 79 C4' RSQ A 4 OK 76 81 80 90 C4' G A 5 OK 92 89 91 113 C4' U A 6 OK 115 112 114 133 C4' A A 7 OK 135 132 134 155 C4' C A 8 OK 157 154 156 173 C4' G B 1 OK 175 172 174 196 C4' U B 2 OK 198 195 197 216 C4' A B 3 OK 218 215 217 249 C4' RSQ B 4 OK 246 251 250 260 C4' G B 5 OK 262 259 261 283 C4' U B 6 OK 285 282 284 303 C4' A B 7 OK 305 302 304 325 C4' C B 8 OK 327 324 326 343 C4' G C 1 OK 345 342 344 366 C4' U C 2 OK 368 365 367 386 C4' A C 3 OK 388 385 387 419 C4' RSQ C 4 OK 416 421 420 430 C4' G C 5 OK 432 429 431 453 C4' U C 6 OK 455 452 454 473 C4' A C 7 OK 475 472 474 495 C4' C C 8 OK 497 494 496 513 C4' G D 1 OK 515 512 514 536 C4' U D 2 OK 538 535 537 556 C4' A D 3 OK 558 555 557 589 C4' RSQ D 4 OK 586 591 590 600 C4' G D 5 OK 602 599 601 623 C4' U D 6 OK 625 622 624 643 C4' A D 7 OK 645 642 644 665 C4' C D 8 OK 667 664 666 683 C4' G E 1 OK 685 682 684 706 C4' U E 2 OK 708 705 707 726 C4' A E 3 OK 728 725 727 759 C4' RSQ E 4 OK 756 761 760 770 C4' G E 5 OK 772 769 771 793 C4' U E 6 OK 795 792 794 813 C4' A E 7 OK 815 812 814 835 C4' C E 8 OK 837 834 836 853 C4' G F 1 OK 855 852 854 876 C4' U F 2 OK 878 875 877 896 C4' A F 3 OK 898 895 897 929 C4' RSQ F 4 OK 926 931 930 940 C4' G F 5 OK 942 939 941 963 C4' U F 6 OK 965 962 964 983 C4' A F 7 OK 985 982 984 1005 C4' C F 8 OK 1007 1004 1006 1023 C4' G G 1 OK 1025 1022 1024 1046 C4' U G 2 OK 1048 1045 1047 1066 C4' A G 3 OK 1068 1065 1067 1099 C4' RSQ G 4 OK 1096 1101 1100 1110 C4' G G 5 OK 1112 1109 1111 1133 C4' U G 6 OK 1135 1132 1134 1153 C4' A G 7 OK 1155 1152 1154 1175 C4' C G 8 OK 1177 1174 1176 1193 C4' G H 1 OK 1195 1192 1194 1216 C4' U H 2 OK 1218 1215 1217 1236 C4' A H 3 OK 1238 1235 1237 1269 C4' RSQ H 4 OK 1266 1271 1270 1280 C4' G H 5 OK 1282 1279 1281 1303 C4' U H 6 OK 1305 1302 1304 1323 C4' A H 7 OK 1325 1322 1324 1345 C4' C H 8 OK 1347 1344 1346 1363 C4' G I 1 OK 1365 1362 1364 1386 C4' U I 2 OK 1388 1385 1387 1406 C4' A I 3 OK 1408 1405 1407 1439 C4' RSQ I 4 OK 1436 1441 1440 1450 C4' G I 5 OK 1452 1449 1451 1473 C4' U I 6 OK 1475 1472 1474 1493 C4' A I 7 OK 1495 1492 1494 1515 C4' C I 8 OK 1517 1514 1516 1533 C4' G J 1 OK 1535 1532 1534 1556 C4' U J 2 OK 1558 1555 1557 1576 C4' A J 3 OK 1578 1575 1577 1609 C4' RSQ J 4 OK 1606 1611 1610 1620 C4' G J 5 OK 1622 1619 1621 1643 C4' U J 6 OK 1645 1642 1644 1663 C4' A J 7 OK 1665 1662 1664 1685 C4' C J 8 OK 1687 1684 1686 1703 C4' G K 1 OK 1705 1702 1704 1726 C4' U K 2 OK 1728 1725 1727 1746 C4' A K 3 OK 1748 1745 1747 1779 C4' RSQ K 4 OK 1776 1781 1780 1790 C4' G K 5 OK 1792 1789 1791 1813 C4' U K 6 OK 1815 1812 1814 1833 C4' A K 7 OK 1835 1832 1834 1855 C4' C K 8 OK 1857 1854 1856 1873 C4' G L 1 OK 1875 1872 1874 1896 C4' U L 2 OK 1898 1895 1897 1916 C4' A L 3 OK 1918 1915 1917 1949 C4' RSQ L 4 OK 1946 1951 1950 1960 C4' G L 5 OK 1962 1959 1961 1983 C4' U L 6 OK 1985 1982 1984 2003 C4' A L 7 OK 2005 2002 2004 2025 C4' C L 8 OK 2027 2024 2026 2043 C4' G M 1 OK 2045 2042 2044 2066 C4' U M 2 OK 2068 2065 2067 2086 C4' A M 3 OK 2088 2085 2087 2119 C4' RSQ M 4 OK 2116 2121 2120 2130 C4' G M 5 OK 2132 2129 2131 2153 C4' U M 6 OK 2155 2152 2154 2173 C4' A M 7 OK 2175 2172 2174 2195 C4' C M 8 OK 2197 2194 2196 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 2 C5' G A 1 1 3 25 C5' U A 2 24 26 45 C5' A A 3 44 46 81 C5' RSQ A 4 82 79 89 C5' G A 5 88 90 112 C5' U A 6 111 113 132 C5' A A 7 131 133 154 C5' C A 8 153 155 172 C5' G B 1 171 173 195 C5' U B 2 194 196 215 C5' A B 3 214 216 251 C5' RSQ B 4 252 249 259 C5' G B 5 258 260 282 C5' U B 6 281 283 302 C5' A B 7 301 303 324 C5' C B 8 323 325 342 C5' G C 1 341 343 365 C5' U C 2 364 366 385 C5' A C 3 384 386 421 C5' RSQ C 4 422 419 429 C5' G C 5 428 430 452 C5' U C 6 451 453 472 C5' A C 7 471 473 494 C5' C C 8 493 495 512 C5' G D 1 511 513 535 C5' U D 2 534 536 555 C5' A D 3 554 556 591 C5' RSQ D 4 592 589 599 C5' G D 5 598 600 622 C5' U D 6 621 623 642 C5' A D 7 641 643 664 C5' C D 8 663 665 682 C5' G E 1 681 683 705 C5' U E 2 704 706 725 C5' A E 3 724 726 761 C5' RSQ E 4 762 759 769 C5' G E 5 768 770 792 C5' U E 6 791 793 812 C5' A E 7 811 813 834 C5' C E 8 833 835 852 C5' G F 1 851 853 875 C5' U F 2 874 876 895 C5' A F 3 894 896 931 C5' RSQ F 4 932 929 939 C5' G F 5 938 940 962 C5' U F 6 961 963 982 C5' A F 7 981 983 1004 C5' C F 8 1003 1005 1022 C5' G G 1 1021 1023 1045 C5' U G 2 1044 1046 1065 C5' A G 3 1064 1066 1101 C5' RSQ G 4 1102 1099 1109 C5' G G 5 1108 1110 1132 C5' U G 6 1131 1133 1152 C5' A G 7 1151 1153 1174 C5' C G 8 1173 1175 1192 C5' G H 1 1191 1193 1215 C5' U H 2 1214 1216 1235 C5' A H 3 1234 1236 1271 C5' RSQ H 4 1272 1269 1279 C5' G H 5 1278 1280 1302 C5' U H 6 1301 1303 1322 C5' A H 7 1321 1323 1344 C5' C H 8 1343 1345 1362 C5' G I 1 1361 1363 1385 C5' U I 2 1384 1386 1405 C5' A I 3 1404 1406 1441 C5' RSQ I 4 1442 1439 1449 C5' G I 5 1448 1450 1472 C5' U I 6 1471 1473 1492 C5' A I 7 1491 1493 1514 C5' C I 8 1513 1515 1532 C5' G J 1 1531 1533 1555 C5' U J 2 1554 1556 1575 C5' A J 3 1574 1576 1611 C5' RSQ J 4 1612 1609 1619 C5' G J 5 1618 1620 1642 C5' U J 6 1641 1643 1662 C5' A J 7 1661 1663 1684 C5' C J 8 1683 1685 1702 C5' G K 1 1701 1703 1725 C5' U K 2 1724 1726 1745 C5' A K 3 1744 1746 1781 C5' RSQ K 4 1782 1779 1789 C5' G K 5 1788 1790 1812 C5' U K 6 1811 1813 1832 C5' A K 7 1831 1833 1854 C5' C K 8 1853 1855 1872 C5' G L 1 1871 1873 1895 C5' U L 2 1894 1896 1915 C5' A L 3 1914 1916 1951 C5' RSQ L 4 1952 1949 1959 C5' G L 5 1958 1960 1982 C5' U L 6 1981 1983 2002 C5' A L 7 2001 2003 2024 C5' C L 8 2023 2025 2042 C5' G M 1 2041 2043 2065 C5' U M 2 2064 2066 2085 C5' A M 3 2084 2086 2121 C5' RSQ M 4 2122 2119 2129 C5' G M 5 2128 2130 2152 C5' U M 6 2151 2153 2172 C5' A M 7 2171 2173 2194 C5' C M 8 2193 2195 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 21 P U A 2 distorted distorted 6 22 23 24 41 P A A 3 distorted distorted 29 42 43 44 63 P RSQ A 4 distorted distorted 49 83 84 82 85 P G A 5 distorted distorted 77 86 87 88 108 P U A 6 distorted distorted 93 109 110 111 128 P A A 7 distorted distorted 116 129 130 131 150 P C A 8 distorted distorted 136 151 152 153 191 P U B 2 distorted distorted 176 192 193 194 211 P A B 3 distorted distorted 199 212 213 214 233 P RSQ B 4 distorted distorted 219 253 254 252 255 P G B 5 distorted distorted 247 256 257 258 278 P U B 6 distorted distorted 263 279 280 281 298 P A B 7 distorted distorted 286 299 300 301 320 P C B 8 distorted distorted 306 321 322 323 361 P U C 2 distorted distorted 346 362 363 364 381 P A C 3 distorted distorted 369 382 383 384 403 P RSQ C 4 distorted distorted 389 423 424 422 425 P G C 5 distorted distorted 417 426 427 428 448 P U C 6 distorted distorted 433 449 450 451 468 P A C 7 distorted distorted 456 469 470 471 490 P C C 8 distorted distorted 476 491 492 493 531 P U D 2 distorted distorted 516 532 533 534 551 P A D 3 distorted distorted 539 552 553 554 573 P RSQ D 4 distorted distorted 559 593 594 592 595 P G D 5 distorted distorted 587 596 597 598 618 P U D 6 distorted distorted 603 619 620 621 638 P A D 7 distorted distorted 626 639 640 641 660 P C D 8 distorted distorted 646 661 662 663 701 P U E 2 distorted distorted 686 702 703 704 721 P A E 3 distorted distorted 709 722 723 724 743 P RSQ E 4 distorted distorted 729 763 764 762 765 P G E 5 distorted distorted 757 766 767 768 788 P U E 6 distorted distorted 773 789 790 791 808 P A E 7 distorted distorted 796 809 810 811 830 P C E 8 distorted distorted 816 831 832 833 871 P U F 2 distorted distorted 856 872 873 874 891 P A F 3 distorted distorted 879 892 893 894 913 P RSQ F 4 distorted distorted 899 933 934 932 935 P G F 5 distorted distorted 927 936 937 938 958 P U F 6 distorted distorted 943 959 960 961 978 P A F 7 distorted distorted 966 979 980 981 1000 P C F 8 distorted distorted 986 1001 1002 1003 1041 P U G 2 distorted distorted 1026 1042 1043 1044 1061 P A G 3 distorted distorted 1049 1062 1063 1064 1083 P RSQ G 4 distorted distorted 1069 1103 1104 1102 1105 P G G 5 distorted distorted 1097 1106 1107 1108 1128 P U G 6 distorted distorted 1113 1129 1130 1131 1148 P A G 7 distorted distorted 1136 1149 1150 1151 1170 P C G 8 distorted distorted 1156 1171 1172 1173 1211 P U H 2 distorted distorted 1196 1212 1213 1214 1231 P A H 3 distorted distorted 1219 1232 1233 1234 1253 P RSQ H 4 distorted distorted 1239 1273 1274 1272 1275 P G H 5 distorted distorted 1267 1276 1277 1278 1298 P U H 6 distorted distorted 1283 1299 1300 1301 1318 P A H 7 distorted distorted 1306 1319 1320 1321 1340 P C H 8 distorted distorted 1326 1341 1342 1343 1381 P U I 2 distorted distorted 1366 1382 1383 1384 1401 P A I 3 distorted distorted 1389 1402 1403 1404 1423 P RSQ I 4 distorted distorted 1409 1443 1444 1442 1445 P G I 5 distorted distorted 1437 1446 1447 1448 1468 P U I 6 distorted distorted 1453 1469 1470 1471 1488 P A I 7 distorted distorted 1476 1489 1490 1491 1510 P C I 8 distorted distorted 1496 1511 1512 1513 1551 P U J 2 distorted distorted 1536 1552 1553 1554 1571 P A J 3 distorted distorted 1559 1572 1573 1574 1593 P RSQ J 4 distorted distorted 1579 1613 1614 1612 1615 P G J 5 distorted distorted 1607 1616 1617 1618 1638 P U J 6 distorted distorted 1623 1639 1640 1641 1658 P A J 7 distorted distorted 1646 1659 1660 1661 1680 P C J 8 distorted distorted 1666 1681 1682 1683 1721 P U K 2 distorted distorted 1706 1722 1723 1724 1741 P A K 3 distorted distorted 1729 1742 1743 1744 1763 P RSQ K 4 distorted distorted 1749 1783 1784 1782 1785 P G K 5 distorted distorted 1777 1786 1787 1788 1808 P U K 6 distorted distorted 1793 1809 1810 1811 1828 P A K 7 distorted distorted 1816 1829 1830 1831 1850 P C K 8 distorted distorted 1836 1851 1852 1853 1891 P U L 2 distorted distorted 1876 1892 1893 1894 1911 P A L 3 distorted distorted 1899 1912 1913 1914 1933 P RSQ L 4 distorted distorted 1919 1953 1954 1952 1955 P G L 5 distorted distorted 1947 1956 1957 1958 1978 P U L 6 distorted distorted 1963 1979 1980 1981 1998 P A L 7 distorted distorted 1986 1999 2000 2001 2020 P C L 8 distorted distorted 2006 2021 2022 2023 2061 P U M 2 distorted distorted 2046 2062 2063 2064 2081 P A M 3 distorted distorted 2069 2082 2083 2084 2103 P RSQ M 4 distorted distorted 2089 2123 2124 2122 2125 P G M 5 distorted distorted 2117 2126 2127 2128 2148 P U M 6 distorted distorted 2133 2149 2150 2151 2168 P A M 7 distorted distorted 2156 2169 2170 2171 2190 P C M 8 distorted distorted 2176 2191 2192 2193 ---------------------------------------------------------------------------------