ID code: '5FKH' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 13 C1' G A 1 beta 8 14 11 36 C1' G A 2 beta 31 37 34 59 C1' C A 3 beta 54 60 57 79 C1' U A 4 beta 74 80 77 99 C1' U A 5 beta 94 100 97 119 C1' A A 6 beta 114 120 117 141 C1' U A 7 beta 136 142 139 161 C1' C A 8 beta 156 162 159 181 C1' A A 9 beta 176 182 179 203 C1' A A 10 beta 198 204 201 225 C1' G A 11 beta 220 226 223 248 C1' A A 12 beta 243 249 246 270 C1' G A 13 beta 265 271 268 293 C1' A A 14 beta 288 294 291 315 C1' G A 15 beta 310 316 313 338 C1' G A 16 beta 333 339 336 361 C1' G A 17 beta 356 362 359 384 C1' U A 18 beta 379 385 382 404 C1' G A 19 beta 399 405 402 427 C1' A A 20 beta 422 428 425 449 C1' G A 21 beta 444 450 447 472 C1' C A 22 beta 467 473 470 492 C1' G A 23 beta 487 493 490 515 C1' A A 24 beta 510 516 513 537 C1' C A 25 beta 532 538 535 557 C1' U A 26 beta 552 558 555 577 C1' G A 27 beta 572 578 575 600 C1' G A 28 beta 595 601 598 623 C1' C A 29 beta 618 624 621 643 C1' G A 30 beta 638 644 641 666 C1' C A 31 beta 661 667 664 686 C1' G A 32 beta 681 687 684 709 C1' A A 33 beta 704 710 707 731 C1' A A 34 beta 726 732 729 753 C1' G A 35 beta 748 754 751 776 C1' A A 36 beta 771 777 774 798 C1' C A 37 beta 793 799 796 818 C1' C A 38 beta 813 819 816 838 C1' C A 39 beta 833 839 836 858 C1' C A 40 beta 853 859 856 878 C1' C A 41 beta 873 879 876 898 C1' G A 42 beta 893 899 896 921 C1' G A 43 beta 916 922 919 944 C1' C A 44 beta 939 945 942 964 C1' A A 45 beta 959 965 962 986 C1' A A 46 beta 981 987 984 1008 C1' C A 47 beta 1003 1009 1006 1028 C1' C A 48 beta 1023 1029 1026 1048 C1' A A 49 beta 1043 1049 1046 1070 C1' G A 50 beta 1065 1071 1068 1093 C1' A A 51 beta 1088 1094 1091 1115 C1' A A 52 beta 1110 1116 1113 1137 C1' A A 53 beta 1132 1138 1135 1159 C1' U A 54 beta 1154 1160 1157 1179 C1' G A 55 beta 1174 1180 1177 1202 C1' G A 56 beta 1197 1203 1200 1225 C1' U A 57 beta 1220 1226 1223 1245 C1' G A 58 beta 1240 1246 1243 1268 C1' C A 59 beta 1263 1269 1266 1288 C1' C A 60 beta 1283 1289 1286 1308 C1' A A 61 beta 1303 1309 1306 1330 C1' A A 62 beta 1325 1331 1328 1352 C1' U A 63 beta 1347 1353 1350 1372 C1' U A 64 beta 1367 1373 1370 1392 C1' C A 65 beta 1387 1393 1390 1412 C1' C A 66 beta 1407 1413 1410 1432 C1' U A 67 beta 1427 1433 1430 1452 C1' G A 68 beta 1447 1453 1450 1475 C1' C A 69 beta 1470 1476 1473 1495 C1' A A 70 beta 1490 1496 1493 1517 C1' G A 71 beta 1512 1518 1515 1540 C1' C A 72 beta 1535 1541 1538 1560 C1' G A 73 beta 1555 1561 1558 1583 C1' G A 74 beta 1578 1584 1581 1606 C1' A A 75 beta 1601 1607 1604 1628 C1' A A 76 beta 1623 1629 1626 1650 C1' A A 77 beta 1645 1651 1648 1672 C1' C A 78 beta 1667 1673 1670 1692 C1' G A 79 beta 1687 1693 1690 1715 C1' U A 80 beta 1710 1716 1713 1735 C1' U A 81 beta 1730 1736 1733 1755 C1' G A 82 beta 1750 1756 1753 1778 C1' A A 83 beta 1773 1779 1776 1800 C1' A A 84 beta 1795 1801 1798 1822 C1' A A 85 beta 1817 1823 1820 1844 C1' G A 86 beta 1839 1845 1842 1867 C1' A A 87 beta 1862 1868 1865 1889 C1' U A 88 beta 1884 1890 1887 1909 C1' G A 89 beta 1904 1910 1907 1932 C1' A A 90 beta 1927 1933 1930 1954 C1' G A 91 beta 1949 1955 1952 1977 C1' C A 92 beta 1972 1978 1975 1997 C1' C A 93 beta 1992 1998 1995 2017 C1' G A 94 beta 2012 2018 2015 2046 C1' SAM A1095 beta 2041 2047 2044 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 11 C2' G A 1 OK 13 9 12 34 C2' G A 2 OK 36 32 35 57 C2' C A 3 OK 59 55 58 77 C2' U A 4 OK 79 75 78 97 C2' U A 5 OK 99 95 98 117 C2' A A 6 OK 119 115 118 139 C2' U A 7 OK 141 137 140 159 C2' C A 8 OK 161 157 160 179 C2' A A 9 OK 181 177 180 201 C2' A A 10 OK 203 199 202 223 C2' G A 11 OK 225 221 224 246 C2' A A 12 OK 248 244 247 268 C2' G A 13 OK 270 266 269 291 C2' A A 14 OK 293 289 292 313 C2' G A 15 OK 315 311 314 336 C2' G A 16 OK 338 334 337 359 C2' G A 17 OK 361 357 360 382 C2' U A 18 OK 384 380 383 402 C2' G A 19 OK 404 400 403 425 C2' A A 20 OK 427 423 426 447 C2' G A 21 OK 449 445 448 470 C2' C A 22 OK 472 468 471 490 C2' G A 23 OK 492 488 491 513 C2' A A 24 OK 515 511 514 535 C2' C A 25 OK 537 533 536 555 C2' U A 26 OK 557 553 556 575 C2' G A 27 OK 577 573 576 598 C2' G A 28 OK 600 596 599 621 C2' C A 29 OK 623 619 622 641 C2' G A 30 OK 643 639 642 664 C2' C A 31 OK 666 662 665 684 C2' G A 32 OK 686 682 685 707 C2' A A 33 OK 709 705 708 729 C2' A A 34 OK 731 727 730 751 C2' G A 35 OK 753 749 752 774 C2' A A 36 OK 776 772 775 796 C2' C A 37 OK 798 794 797 816 C2' C A 38 OK 818 814 817 836 C2' C A 39 OK 838 834 837 856 C2' C A 40 OK 858 854 857 876 C2' C A 41 OK 878 874 877 896 C2' G A 42 OK 898 894 897 919 C2' G A 43 OK 921 917 920 942 C2' C A 44 OK 944 940 943 962 C2' A A 45 OK 964 960 963 984 C2' A A 46 OK 986 982 985 1006 C2' C A 47 OK 1008 1004 1007 1026 C2' C A 48 OK 1028 1024 1027 1046 C2' A A 49 OK 1048 1044 1047 1068 C2' G A 50 OK 1070 1066 1069 1091 C2' A A 51 OK 1093 1089 1092 1113 C2' A A 52 OK 1115 1111 1114 1135 C2' A A 53 OK 1137 1133 1136 1157 C2' U A 54 OK 1159 1155 1158 1177 C2' G A 55 OK 1179 1175 1178 1200 C2' G A 56 OK 1202 1198 1201 1223 C2' U A 57 OK 1225 1221 1224 1243 C2' G A 58 OK 1245 1241 1244 1266 C2' C A 59 OK 1268 1264 1267 1286 C2' C A 60 OK 1288 1284 1287 1306 C2' A A 61 OK 1308 1304 1307 1328 C2' A A 62 OK 1330 1326 1329 1350 C2' U A 63 OK 1352 1348 1351 1370 C2' U A 64 OK 1372 1368 1371 1390 C2' C A 65 OK 1392 1388 1391 1410 C2' C A 66 OK 1412 1408 1411 1430 C2' U A 67 OK 1432 1428 1431 1450 C2' G A 68 OK 1452 1448 1451 1473 C2' C A 69 OK 1475 1471 1474 1493 C2' A A 70 OK 1495 1491 1494 1515 C2' G A 71 OK 1517 1513 1516 1538 C2' C A 72 OK 1540 1536 1539 1558 C2' G A 73 OK 1560 1556 1559 1581 C2' G A 74 OK 1583 1579 1582 1604 C2' A A 75 OK 1606 1602 1605 1626 C2' A A 76 OK 1628 1624 1627 1648 C2' A A 77 OK 1650 1646 1649 1670 C2' C A 78 OK 1672 1668 1671 1690 C2' G A 79 OK 1692 1688 1691 1713 C2' U A 80 OK 1715 1711 1714 1733 C2' U A 81 OK 1735 1731 1734 1753 C2' G A 82 OK 1755 1751 1754 1776 C2' A A 83 OK 1778 1774 1777 1798 C2' A A 84 OK 1800 1796 1799 1820 C2' A A 85 OK 1822 1818 1821 1842 C2' G A 86 OK 1844 1840 1843 1865 C2' A A 87 OK 1867 1863 1866 1887 C2' U A 88 OK 1889 1885 1888 1907 C2' G A 89 OK 1909 1905 1908 1930 C2' A A 90 OK 1932 1928 1931 1952 C2' G A 91 OK 1954 1950 1953 1975 C2' C A 92 OK 1977 1973 1976 1995 C2' C A 93 OK 1997 1993 1996 2015 C2' G A 94 OK 2017 2013 2016 2044 C2' SAM A1095 OK 2046 2042 2045 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 9 C3' G A 1 OK 7 10 11 32 C3' G A 2 OK 30 33 34 55 C3' C A 3 OK 53 56 57 75 C3' U A 4 OK 73 76 77 95 C3' U A 5 OK 93 96 97 115 C3' A A 6 OK 113 116 117 137 C3' U A 7 OK 135 138 139 157 C3' C A 8 OK 155 158 159 177 C3' A A 9 OK 175 178 179 199 C3' A A 10 OK 197 200 201 221 C3' G A 11 OK 219 222 223 244 C3' A A 12 OK 242 245 246 266 C3' G A 13 OK 264 267 268 289 C3' A A 14 OK 287 290 291 311 C3' G A 15 OK 309 312 313 334 C3' G A 16 OK 332 335 336 357 C3' G A 17 OK 355 358 359 380 C3' U A 18 OK 378 381 382 400 C3' G A 19 OK 398 401 402 423 C3' A A 20 OK 421 424 425 445 C3' G A 21 OK 443 446 447 468 C3' C A 22 OK 466 469 470 488 C3' G A 23 OK 486 489 490 511 C3' A A 24 OK 509 512 513 533 C3' C A 25 OK 531 534 535 553 C3' U A 26 OK 551 554 555 573 C3' G A 27 OK 571 574 575 596 C3' G A 28 OK 594 597 598 619 C3' C A 29 OK 617 620 621 639 C3' G A 30 OK 637 640 641 662 C3' C A 31 OK 660 663 664 682 C3' G A 32 OK 680 683 684 705 C3' A A 33 OK 703 706 707 727 C3' A A 34 OK 725 728 729 749 C3' G A 35 OK 747 750 751 772 C3' A A 36 OK 770 773 774 794 C3' C A 37 OK 792 795 796 814 C3' C A 38 OK 812 815 816 834 C3' C A 39 OK 832 835 836 854 C3' C A 40 OK 852 855 856 874 C3' C A 41 OK 872 875 876 894 C3' G A 42 OK 892 895 896 917 C3' G A 43 OK 915 918 919 940 C3' C A 44 OK 938 941 942 960 C3' A A 45 OK 958 961 962 982 C3' A A 46 OK 980 983 984 1004 C3' C A 47 OK 1002 1005 1006 1024 C3' C A 48 OK 1022 1025 1026 1044 C3' A A 49 OK 1042 1045 1046 1066 C3' G A 50 OK 1064 1067 1068 1089 C3' A A 51 OK 1087 1090 1091 1111 C3' A A 52 OK 1109 1112 1113 1133 C3' A A 53 OK 1131 1134 1135 1155 C3' U A 54 OK 1153 1156 1157 1175 C3' G A 55 OK 1173 1176 1177 1198 C3' G A 56 OK 1196 1199 1200 1221 C3' U A 57 OK 1219 1222 1223 1241 C3' G A 58 OK 1239 1242 1243 1264 C3' C A 59 OK 1262 1265 1266 1284 C3' C A 60 OK 1282 1285 1286 1304 C3' A A 61 OK 1302 1305 1306 1326 C3' A A 62 OK 1324 1327 1328 1348 C3' U A 63 OK 1346 1349 1350 1368 C3' U A 64 OK 1366 1369 1370 1388 C3' C A 65 OK 1386 1389 1390 1408 C3' C A 66 OK 1406 1409 1410 1428 C3' U A 67 OK 1426 1429 1430 1448 C3' G A 68 OK 1446 1449 1450 1471 C3' C A 69 OK 1469 1472 1473 1491 C3' A A 70 OK 1489 1492 1493 1513 C3' G A 71 OK 1511 1514 1515 1536 C3' C A 72 OK 1534 1537 1538 1556 C3' G A 73 OK 1554 1557 1558 1579 C3' G A 74 OK 1577 1580 1581 1602 C3' A A 75 OK 1600 1603 1604 1624 C3' A A 76 OK 1622 1625 1626 1646 C3' A A 77 OK 1644 1647 1648 1668 C3' C A 78 OK 1666 1669 1670 1688 C3' G A 79 OK 1686 1689 1690 1711 C3' U A 80 OK 1709 1712 1713 1731 C3' U A 81 OK 1729 1732 1733 1751 C3' G A 82 OK 1749 1752 1753 1774 C3' A A 83 OK 1772 1775 1776 1796 C3' A A 84 OK 1794 1797 1798 1818 C3' A A 85 OK 1816 1819 1820 1840 C3' G A 86 OK 1838 1841 1842 1863 C3' A A 87 OK 1861 1864 1865 1885 C3' U A 88 OK 1883 1886 1887 1905 C3' G A 89 OK 1903 1906 1907 1928 C3' A A 90 OK 1926 1929 1930 1950 C3' G A 91 OK 1948 1951 1952 1973 C3' C A 92 OK 1971 1974 1975 1993 C3' C A 93 OK 1991 1994 1995 2013 C3' G A 94 OK 2011 2014 2015 2042 C3' SAM A1095 OK 2040 2043 2044 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 7 C4' G A 1 OK 9 6 8 30 C4' G A 2 OK 32 29 31 53 C4' C A 3 OK 55 52 54 73 C4' U A 4 OK 75 72 74 93 C4' U A 5 OK 95 92 94 113 C4' A A 6 OK 115 112 114 135 C4' U A 7 OK 137 134 136 155 C4' C A 8 OK 157 154 156 175 C4' A A 9 OK 177 174 176 197 C4' A A 10 OK 199 196 198 219 C4' G A 11 OK 221 218 220 242 C4' A A 12 OK 244 241 243 264 C4' G A 13 OK 266 263 265 287 C4' A A 14 OK 289 286 288 309 C4' G A 15 OK 311 308 310 332 C4' G A 16 OK 334 331 333 355 C4' G A 17 OK 357 354 356 378 C4' U A 18 OK 380 377 379 398 C4' G A 19 OK 400 397 399 421 C4' A A 20 OK 423 420 422 443 C4' G A 21 OK 445 442 444 466 C4' C A 22 OK 468 465 467 486 C4' G A 23 OK 488 485 487 509 C4' A A 24 OK 511 508 510 531 C4' C A 25 OK 533 530 532 551 C4' U A 26 OK 553 550 552 571 C4' G A 27 OK 573 570 572 594 C4' G A 28 OK 596 593 595 617 C4' C A 29 OK 619 616 618 637 C4' G A 30 OK 639 636 638 660 C4' C A 31 OK 662 659 661 680 C4' G A 32 OK 682 679 681 703 C4' A A 33 OK 705 702 704 725 C4' A A 34 OK 727 724 726 747 C4' G A 35 OK 749 746 748 770 C4' A A 36 OK 772 769 771 792 C4' C A 37 OK 794 791 793 812 C4' C A 38 OK 814 811 813 832 C4' C A 39 OK 834 831 833 852 C4' C A 40 OK 854 851 853 872 C4' C A 41 OK 874 871 873 892 C4' G A 42 OK 894 891 893 915 C4' G A 43 OK 917 914 916 938 C4' C A 44 OK 940 937 939 958 C4' A A 45 OK 960 957 959 980 C4' A A 46 OK 982 979 981 1002 C4' C A 47 OK 1004 1001 1003 1022 C4' C A 48 OK 1024 1021 1023 1042 C4' A A 49 OK 1044 1041 1043 1064 C4' G A 50 OK 1066 1063 1065 1087 C4' A A 51 OK 1089 1086 1088 1109 C4' A A 52 OK 1111 1108 1110 1131 C4' A A 53 OK 1133 1130 1132 1153 C4' U A 54 OK 1155 1152 1154 1173 C4' G A 55 OK 1175 1172 1174 1196 C4' G A 56 OK 1198 1195 1197 1219 C4' U A 57 OK 1221 1218 1220 1239 C4' G A 58 OK 1241 1238 1240 1262 C4' C A 59 OK 1264 1261 1263 1282 C4' C A 60 OK 1284 1281 1283 1302 C4' A A 61 OK 1304 1301 1303 1324 C4' A A 62 OK 1326 1323 1325 1346 C4' U A 63 OK 1348 1345 1347 1366 C4' U A 64 OK 1368 1365 1367 1386 C4' C A 65 OK 1388 1385 1387 1406 C4' C A 66 OK 1408 1405 1407 1426 C4' U A 67 OK 1428 1425 1427 1446 C4' G A 68 OK 1448 1445 1447 1469 C4' C A 69 OK 1471 1468 1470 1489 C4' A A 70 OK 1491 1488 1490 1511 C4' G A 71 OK 1513 1510 1512 1534 C4' C A 72 OK 1536 1533 1535 1554 C4' G A 73 OK 1556 1553 1555 1577 C4' G A 74 OK 1579 1576 1578 1600 C4' A A 75 OK 1602 1599 1601 1622 C4' A A 76 OK 1624 1621 1623 1644 C4' A A 77 OK 1646 1643 1645 1666 C4' C A 78 OK 1668 1665 1667 1686 C4' G A 79 OK 1688 1685 1687 1709 C4' U A 80 OK 1711 1708 1710 1729 C4' U A 81 OK 1731 1728 1730 1749 C4' G A 82 OK 1751 1748 1750 1772 C4' A A 83 OK 1774 1771 1773 1794 C4' A A 84 OK 1796 1793 1795 1816 C4' A A 85 OK 1818 1815 1817 1838 C4' G A 86 OK 1840 1837 1839 1861 C4' A A 87 OK 1863 1860 1862 1883 C4' U A 88 OK 1885 1882 1884 1903 C4' G A 89 OK 1905 1902 1904 1926 C4' A A 90 OK 1928 1925 1927 1948 C4' G A 91 OK 1950 1947 1949 1971 C4' C A 92 OK 1973 1970 1972 1991 C4' C A 93 OK 1993 1990 1992 2011 C4' G A 94 OK 2013 2010 2012 2040 C4' SAM A1095 OK 2042 2039 2041 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 6 C5' G A 1 5 7 29 C5' G A 2 28 30 52 C5' C A 3 51 53 72 C5' U A 4 71 73 92 C5' U A 5 91 93 112 C5' A A 6 111 113 134 C5' U A 7 133 135 154 C5' C A 8 153 155 174 C5' A A 9 173 175 196 C5' A A 10 195 197 218 C5' G A 11 217 219 241 C5' A A 12 240 242 263 C5' G A 13 262 264 286 C5' A A 14 285 287 308 C5' G A 15 307 309 331 C5' G A 16 330 332 354 C5' G A 17 353 355 377 C5' U A 18 376 378 397 C5' G A 19 396 398 420 C5' A A 20 419 421 442 C5' G A 21 441 443 465 C5' C A 22 464 466 485 C5' G A 23 484 486 508 C5' A A 24 507 509 530 C5' C A 25 529 531 550 C5' U A 26 549 551 570 C5' G A 27 569 571 593 C5' G A 28 592 594 616 C5' C A 29 615 617 636 C5' G A 30 635 637 659 C5' C A 31 658 660 679 C5' G A 32 678 680 702 C5' A A 33 701 703 724 C5' A A 34 723 725 746 C5' G A 35 745 747 769 C5' A A 36 768 770 791 C5' C A 37 790 792 811 C5' C A 38 810 812 831 C5' C A 39 830 832 851 C5' C A 40 850 852 871 C5' C A 41 870 872 891 C5' G A 42 890 892 914 C5' G A 43 913 915 937 C5' C A 44 936 938 957 C5' A A 45 956 958 979 C5' A A 46 978 980 1001 C5' C A 47 1000 1002 1021 C5' C A 48 1020 1022 1041 C5' A A 49 1040 1042 1063 C5' G A 50 1062 1064 1086 C5' A A 51 1085 1087 1108 C5' A A 52 1107 1109 1130 C5' A A 53 1129 1131 1152 C5' U A 54 1151 1153 1172 C5' G A 55 1171 1173 1195 C5' G A 56 1194 1196 1218 C5' U A 57 1217 1219 1238 C5' G A 58 1237 1239 1261 C5' C A 59 1260 1262 1281 C5' C A 60 1280 1282 1301 C5' A A 61 1300 1302 1323 C5' A A 62 1322 1324 1345 C5' U A 63 1344 1346 1365 C5' U A 64 1364 1366 1385 C5' C A 65 1384 1386 1405 C5' C A 66 1404 1406 1425 C5' U A 67 1424 1426 1445 C5' G A 68 1444 1446 1468 C5' C A 69 1467 1469 1488 C5' A A 70 1487 1489 1510 C5' G A 71 1509 1511 1533 C5' C A 72 1532 1534 1553 C5' G A 73 1552 1554 1576 C5' G A 74 1575 1577 1599 C5' A A 75 1598 1600 1621 C5' A A 76 1620 1622 1643 C5' A A 77 1642 1644 1665 C5' C A 78 1664 1666 1685 C5' G A 79 1684 1686 1708 C5' U A 80 1707 1709 1728 C5' U A 81 1727 1729 1748 C5' G A 82 1747 1749 1771 C5' A A 83 1770 1772 1793 C5' A A 84 1792 1794 1815 C5' A A 85 1814 1816 1837 C5' G A 86 1836 1838 1860 C5' A A 87 1859 1861 1882 C5' U A 88 1881 1883 1902 C5' G A 89 1901 1903 1925 C5' A A 90 1924 1926 1947 C5' G A 91 1946 1948 1970 C5' C A 92 1969 1971 1990 C5' C A 93 1989 1991 2010 C5' G A 94 2009 2011 2039 C5' SAM A1095 2040 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 2 P G A 1 distorted distorted 3 4 5 25 P G A 2 distorted distorted 10 26 27 28 48 P C A 3 distorted distorted 33 49 50 51 68 P U A 4 distorted distorted 56 69 70 71 88 P U A 5 distorted distorted 76 89 90 91 108 P A A 6 distorted distorted 96 109 110 111 130 P U A 7 distorted distorted 116 131 132 133 150 P C A 8 distorted distorted 138 151 152 153 170 P A A 9 distorted distorted 158 171 172 173 192 P A A 10 distorted distorted 178 193 194 195 214 P G A 11 distorted distorted 200 215 216 217 237 P A A 12 distorted distorted 222 238 239 240 259 P G A 13 distorted distorted 245 260 261 262 282 P A A 14 distorted distorted 267 283 284 285 304 P G A 15 distorted distorted 290 305 306 307 327 P G A 16 distorted distorted 312 328 329 330 350 P G A 17 distorted distorted 335 351 352 353 373 P U A 18 distorted distorted 358 374 375 376 393 P G A 19 distorted distorted 381 394 395 396 416 P A A 20 distorted distorted 401 417 418 419 438 P G A 21 distorted distorted 424 439 440 441 461 P C A 22 distorted distorted 446 462 463 464 481 P G A 23 distorted distorted 469 482 483 484 504 P A A 24 distorted distorted 489 505 506 507 526 P C A 25 distorted distorted 512 527 528 529 546 P U A 26 distorted distorted 534 547 548 549 566 P G A 27 distorted distorted 554 567 568 569 589 P G A 28 distorted distorted 574 590 591 592 612 P C A 29 distorted distorted 597 613 614 615 632 P G A 30 distorted distorted 620 633 634 635 655 P C A 31 distorted distorted 640 656 657 658 675 P G A 32 OK OK 663 676 677 678 698 P A A 33 distorted distorted 683 699 700 701 720 P A A 34 distorted distorted 706 721 722 723 742 P G A 35 distorted distorted 728 743 744 745 765 P A A 36 distorted distorted 750 766 767 768 787 P C A 37 distorted distorted 773 788 789 790 807 P C A 38 distorted distorted 795 808 809 810 827 P C A 39 distorted distorted 815 828 829 830 847 P C A 40 distorted distorted 835 848 849 850 867 P C A 41 distorted distorted 855 868 869 870 887 P G A 42 distorted distorted 875 888 889 890 910 P G A 43 distorted distorted 895 911 912 913 933 P C A 44 distorted distorted 918 934 935 936 953 P A A 45 distorted distorted 941 954 955 956 975 P A A 46 distorted distorted 961 976 977 978 997 P C A 47 distorted distorted 983 998 999 1000 1017 P C A 48 distorted distorted 1005 1018 1019 1020 1037 P A A 49 distorted distorted 1025 1038 1039 1040 1059 P G A 50 distorted distorted 1045 1060 1061 1062 1082 P A A 51 distorted distorted 1067 1083 1084 1085 1104 P A A 52 distorted distorted 1090 1105 1106 1107 1126 P A A 53 distorted distorted 1112 1127 1128 1129 1148 P U A 54 distorted distorted 1134 1149 1150 1151 1168 P G A 55 distorted distorted 1156 1169 1170 1171 1191 P G A 56 distorted distorted 1176 1192 1193 1194 1214 P U A 57 distorted distorted 1199 1215 1216 1217 1234 P G A 58 distorted distorted 1222 1235 1236 1237 1257 P C A 59 distorted distorted 1242 1258 1259 1260 1277 P C A 60 distorted distorted 1265 1278 1279 1280 1297 P A A 61 distorted distorted 1285 1298 1299 1300 1319 P A A 62 distorted distorted 1305 1320 1321 1322 1341 P U A 63 distorted distorted 1327 1342 1343 1344 1361 P U A 64 distorted distorted 1349 1362 1363 1364 1381 P C A 65 distorted distorted 1369 1382 1383 1384 1401 P C A 66 distorted distorted 1389 1402 1403 1404 1421 P U A 67 distorted distorted 1409 1422 1423 1424 1441 P G A 68 distorted distorted 1429 1442 1443 1444 1464 P C A 69 distorted distorted 1449 1465 1466 1467 1484 P A A 70 distorted distorted 1472 1485 1486 1487 1506 P G A 71 distorted distorted 1492 1507 1508 1509 1529 P C A 72 distorted distorted 1514 1530 1531 1532 1549 P G A 73 distorted distorted 1537 1550 1551 1552 1572 P G A 74 distorted distorted 1557 1573 1574 1575 1595 P A A 75 distorted distorted 1580 1596 1597 1598 1617 P A A 76 distorted distorted 1603 1618 1619 1620 1639 P A A 77 distorted distorted 1625 1640 1641 1642 1661 P C A 78 distorted distorted 1647 1662 1663 1664 1681 P G A 79 distorted distorted 1669 1682 1683 1684 1704 P U A 80 distorted distorted 1689 1705 1706 1707 1724 P U A 81 distorted distorted 1712 1725 1726 1727 1744 P G A 82 distorted distorted 1732 1745 1746 1747 1767 P A A 83 distorted distorted 1752 1768 1769 1770 1789 P A A 84 distorted distorted 1775 1790 1791 1792 1811 P A A 85 distorted distorted 1797 1812 1813 1814 1833 P G A 86 distorted distorted 1819 1834 1835 1836 1856 P A A 87 distorted distorted 1841 1857 1858 1859 1878 P U A 88 distorted distorted 1864 1879 1880 1881 1898 P G A 89 distorted distorted 1886 1899 1900 1901 1921 P A A 90 distorted distorted 1906 1922 1923 1924 1943 P G A 91 distorted distorted 1929 1944 1945 1946 1966 P C A 92 distorted distorted 1951 1967 1968 1969 1986 P C A 93 OK OK 1974 1987 1988 1989 2006 P G A 94 distorted distorted 1994 2007 2008 2009 ---------------------------------------------------------------------------------