ID code: '5FKG' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 13 C1' G A 1 beta 8 14 11 36 C1' G A 2 beta 31 37 34 59 C1' C A 3 beta 54 60 57 79 C1' U A 4 beta 74 80 77 99 C1' U A 5 beta 94 100 97 119 C1' A A 6 beta 114 120 117 141 C1' U A 7 beta 136 142 139 161 C1' C A 8 beta 156 162 159 181 C1' A A 9 beta 176 182 179 203 C1' A A 10 beta 198 204 201 225 C1' G A 11 beta 220 226 223 248 C1' A A 12 beta 243 249 246 270 C1' G A 13 beta 265 271 268 293 C1' A A 14 beta 288 294 291 315 C1' G A 15 beta 310 316 313 338 C1' G A 16 beta 333 339 336 361 C1' G A 17 beta 356 362 359 384 C1' G A 18 beta 379 385 382 407 C1' G A 19 beta 402 408 405 430 C1' A A 20 beta 425 431 428 452 C1' G A 21 beta 447 453 450 475 C1' U A 22 beta 470 476 473 495 C1' G A 23 beta 490 496 493 518 C1' A A 24 beta 513 519 516 540 C1' C A 25 beta 535 541 538 560 C1' U A 26 beta 555 561 558 580 C1' G A 27 beta 575 581 578 603 C1' G A 28 beta 598 604 601 626 C1' C A 29 beta 621 627 624 646 C1' G A 30 beta 641 647 644 669 C1' C A 31 beta 664 670 667 689 C1' G A 32 beta 684 690 687 712 C1' A A 33 beta 707 713 710 734 C1' A A 34 beta 729 735 732 756 C1' G A 35 beta 751 757 754 779 C1' A A 36 beta 774 780 777 801 C1' C A 37 beta 796 802 799 821 C1' C A 38 beta 816 822 819 841 C1' C A 39 beta 836 842 839 861 C1' C A 40 beta 856 862 859 881 C1' C A 41 beta 876 882 879 901 C1' G A 42 beta 896 902 899 924 C1' G A 43 beta 919 925 922 947 C1' C A 44 beta 942 948 945 967 C1' A A 45 beta 962 968 965 989 C1' A A 46 beta 984 990 987 1011 C1' C A 47 beta 1006 1012 1009 1031 C1' C A 48 beta 1026 1032 1029 1051 C1' A A 49 beta 1046 1052 1049 1073 C1' G A 50 beta 1068 1074 1071 1096 C1' A A 51 beta 1091 1097 1094 1118 C1' A A 52 beta 1113 1119 1116 1140 C1' A A 53 beta 1135 1141 1138 1162 C1' U A 54 beta 1157 1163 1160 1182 C1' G A 55 beta 1177 1183 1180 1205 C1' G A 56 beta 1200 1206 1203 1228 C1' U A 57 beta 1223 1229 1226 1248 C1' G A 58 beta 1243 1249 1246 1271 C1' C A 59 beta 1266 1272 1269 1291 C1' C A 60 beta 1286 1292 1289 1311 C1' A A 61 beta 1306 1312 1309 1333 C1' A A 62 beta 1328 1334 1331 1355 C1' U A 63 beta 1350 1356 1353 1375 C1' U A 64 beta 1370 1376 1373 1395 C1' C A 65 beta 1390 1396 1393 1415 C1' C A 66 beta 1410 1416 1413 1435 C1' U A 67 beta 1430 1436 1433 1455 C1' G A 68 beta 1450 1456 1453 1478 C1' C A 69 beta 1473 1479 1476 1498 C1' A A 70 beta 1493 1499 1496 1520 C1' G A 71 beta 1515 1521 1518 1543 C1' C A 72 beta 1538 1544 1541 1563 C1' G A 73 beta 1558 1564 1561 1586 C1' G A 74 beta 1581 1587 1584 1609 C1' A A 75 beta 1604 1610 1607 1631 C1' A A 76 beta 1626 1632 1629 1653 C1' A A 77 beta 1648 1654 1651 1675 C1' C A 78 beta 1670 1676 1673 1695 C1' G A 79 beta 1690 1696 1693 1718 C1' U A 80 beta 1713 1719 1716 1738 C1' U A 81 beta 1733 1739 1736 1758 C1' G A 82 beta 1753 1759 1756 1781 C1' A A 83 beta 1776 1782 1779 1803 C1' A A 84 beta 1798 1804 1801 1825 C1' A A 85 beta 1820 1826 1823 1847 C1' G A 86 beta 1842 1848 1845 1870 C1' A A 87 beta 1865 1871 1868 1892 C1' U A 88 beta 1887 1893 1890 1912 C1' G A 89 beta 1907 1913 1910 1935 C1' A A 90 beta 1930 1936 1933 1957 C1' G A 91 beta 1952 1958 1955 1980 C1' C A 92 beta 1975 1981 1978 2000 C1' C A 93 beta 1995 2001 1998 2020 C1' G A 94 beta 2015 2021 2018 2049 C1' SAM A1095 beta 2044 2050 2047 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 11 C2' G A 1 OK 13 9 12 34 C2' G A 2 OK 36 32 35 57 C2' C A 3 OK 59 55 58 77 C2' U A 4 OK 79 75 78 97 C2' U A 5 OK 99 95 98 117 C2' A A 6 OK 119 115 118 139 C2' U A 7 OK 141 137 140 159 C2' C A 8 OK 161 157 160 179 C2' A A 9 OK 181 177 180 201 C2' A A 10 OK 203 199 202 223 C2' G A 11 OK 225 221 224 246 C2' A A 12 OK 248 244 247 268 C2' G A 13 OK 270 266 269 291 C2' A A 14 OK 293 289 292 313 C2' G A 15 OK 315 311 314 336 C2' G A 16 OK 338 334 337 359 C2' G A 17 OK 361 357 360 382 C2' G A 18 OK 384 380 383 405 C2' G A 19 OK 407 403 406 428 C2' A A 20 OK 430 426 429 450 C2' G A 21 OK 452 448 451 473 C2' U A 22 OK 475 471 474 493 C2' G A 23 OK 495 491 494 516 C2' A A 24 OK 518 514 517 538 C2' C A 25 OK 540 536 539 558 C2' U A 26 OK 560 556 559 578 C2' G A 27 OK 580 576 579 601 C2' G A 28 OK 603 599 602 624 C2' C A 29 OK 626 622 625 644 C2' G A 30 OK 646 642 645 667 C2' C A 31 OK 669 665 668 687 C2' G A 32 OK 689 685 688 710 C2' A A 33 OK 712 708 711 732 C2' A A 34 OK 734 730 733 754 C2' G A 35 OK 756 752 755 777 C2' A A 36 OK 779 775 778 799 C2' C A 37 OK 801 797 800 819 C2' C A 38 OK 821 817 820 839 C2' C A 39 OK 841 837 840 859 C2' C A 40 OK 861 857 860 879 C2' C A 41 OK 881 877 880 899 C2' G A 42 OK 901 897 900 922 C2' G A 43 OK 924 920 923 945 C2' C A 44 OK 947 943 946 965 C2' A A 45 OK 967 963 966 987 C2' A A 46 OK 989 985 988 1009 C2' C A 47 OK 1011 1007 1010 1029 C2' C A 48 OK 1031 1027 1030 1049 C2' A A 49 OK 1051 1047 1050 1071 C2' G A 50 OK 1073 1069 1072 1094 C2' A A 51 OK 1096 1092 1095 1116 C2' A A 52 OK 1118 1114 1117 1138 C2' A A 53 OK 1140 1136 1139 1160 C2' U A 54 OK 1162 1158 1161 1180 C2' G A 55 OK 1182 1178 1181 1203 C2' G A 56 OK 1205 1201 1204 1226 C2' U A 57 OK 1228 1224 1227 1246 C2' G A 58 OK 1248 1244 1247 1269 C2' C A 59 OK 1271 1267 1270 1289 C2' C A 60 OK 1291 1287 1290 1309 C2' A A 61 OK 1311 1307 1310 1331 C2' A A 62 OK 1333 1329 1332 1353 C2' U A 63 OK 1355 1351 1354 1373 C2' U A 64 OK 1375 1371 1374 1393 C2' C A 65 OK 1395 1391 1394 1413 C2' C A 66 OK 1415 1411 1414 1433 C2' U A 67 OK 1435 1431 1434 1453 C2' G A 68 OK 1455 1451 1454 1476 C2' C A 69 OK 1478 1474 1477 1496 C2' A A 70 OK 1498 1494 1497 1518 C2' G A 71 OK 1520 1516 1519 1541 C2' C A 72 OK 1543 1539 1542 1561 C2' G A 73 OK 1563 1559 1562 1584 C2' G A 74 OK 1586 1582 1585 1607 C2' A A 75 OK 1609 1605 1608 1629 C2' A A 76 OK 1631 1627 1630 1651 C2' A A 77 OK 1653 1649 1652 1673 C2' C A 78 OK 1675 1671 1674 1693 C2' G A 79 OK 1695 1691 1694 1716 C2' U A 80 OK 1718 1714 1717 1736 C2' U A 81 OK 1738 1734 1737 1756 C2' G A 82 OK 1758 1754 1757 1779 C2' A A 83 OK 1781 1777 1780 1801 C2' A A 84 OK 1803 1799 1802 1823 C2' A A 85 OK 1825 1821 1824 1845 C2' G A 86 OK 1847 1843 1846 1868 C2' A A 87 OK 1870 1866 1869 1890 C2' U A 88 OK 1892 1888 1891 1910 C2' G A 89 OK 1912 1908 1911 1933 C2' A A 90 OK 1935 1931 1934 1955 C2' G A 91 OK 1957 1953 1956 1978 C2' C A 92 OK 1980 1976 1979 1998 C2' C A 93 OK 2000 1996 1999 2018 C2' G A 94 OK 2020 2016 2019 2047 C2' SAM A1095 OK 2049 2045 2048 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 9 C3' G A 1 OK 7 10 11 32 C3' G A 2 OK 30 33 34 55 C3' C A 3 OK 53 56 57 75 C3' U A 4 OK 73 76 77 95 C3' U A 5 OK 93 96 97 115 C3' A A 6 OK 113 116 117 137 C3' U A 7 OK 135 138 139 157 C3' C A 8 OK 155 158 159 177 C3' A A 9 OK 175 178 179 199 C3' A A 10 OK 197 200 201 221 C3' G A 11 OK 219 222 223 244 C3' A A 12 OK 242 245 246 266 C3' G A 13 OK 264 267 268 289 C3' A A 14 OK 287 290 291 311 C3' G A 15 OK 309 312 313 334 C3' G A 16 OK 332 335 336 357 C3' G A 17 OK 355 358 359 380 C3' G A 18 OK 378 381 382 403 C3' G A 19 OK 401 404 405 426 C3' A A 20 OK 424 427 428 448 C3' G A 21 OK 446 449 450 471 C3' U A 22 OK 469 472 473 491 C3' G A 23 OK 489 492 493 514 C3' A A 24 OK 512 515 516 536 C3' C A 25 OK 534 537 538 556 C3' U A 26 OK 554 557 558 576 C3' G A 27 OK 574 577 578 599 C3' G A 28 OK 597 600 601 622 C3' C A 29 OK 620 623 624 642 C3' G A 30 OK 640 643 644 665 C3' C A 31 OK 663 666 667 685 C3' G A 32 OK 683 686 687 708 C3' A A 33 OK 706 709 710 730 C3' A A 34 OK 728 731 732 752 C3' G A 35 OK 750 753 754 775 C3' A A 36 OK 773 776 777 797 C3' C A 37 OK 795 798 799 817 C3' C A 38 OK 815 818 819 837 C3' C A 39 OK 835 838 839 857 C3' C A 40 OK 855 858 859 877 C3' C A 41 OK 875 878 879 897 C3' G A 42 OK 895 898 899 920 C3' G A 43 OK 918 921 922 943 C3' C A 44 OK 941 944 945 963 C3' A A 45 OK 961 964 965 985 C3' A A 46 OK 983 986 987 1007 C3' C A 47 OK 1005 1008 1009 1027 C3' C A 48 OK 1025 1028 1029 1047 C3' A A 49 OK 1045 1048 1049 1069 C3' G A 50 OK 1067 1070 1071 1092 C3' A A 51 OK 1090 1093 1094 1114 C3' A A 52 OK 1112 1115 1116 1136 C3' A A 53 OK 1134 1137 1138 1158 C3' U A 54 OK 1156 1159 1160 1178 C3' G A 55 OK 1176 1179 1180 1201 C3' G A 56 OK 1199 1202 1203 1224 C3' U A 57 OK 1222 1225 1226 1244 C3' G A 58 OK 1242 1245 1246 1267 C3' C A 59 OK 1265 1268 1269 1287 C3' C A 60 OK 1285 1288 1289 1307 C3' A A 61 OK 1305 1308 1309 1329 C3' A A 62 OK 1327 1330 1331 1351 C3' U A 63 OK 1349 1352 1353 1371 C3' U A 64 OK 1369 1372 1373 1391 C3' C A 65 OK 1389 1392 1393 1411 C3' C A 66 OK 1409 1412 1413 1431 C3' U A 67 OK 1429 1432 1433 1451 C3' G A 68 OK 1449 1452 1453 1474 C3' C A 69 OK 1472 1475 1476 1494 C3' A A 70 OK 1492 1495 1496 1516 C3' G A 71 OK 1514 1517 1518 1539 C3' C A 72 OK 1537 1540 1541 1559 C3' G A 73 OK 1557 1560 1561 1582 C3' G A 74 OK 1580 1583 1584 1605 C3' A A 75 OK 1603 1606 1607 1627 C3' A A 76 OK 1625 1628 1629 1649 C3' A A 77 OK 1647 1650 1651 1671 C3' C A 78 OK 1669 1672 1673 1691 C3' G A 79 OK 1689 1692 1693 1714 C3' U A 80 OK 1712 1715 1716 1734 C3' U A 81 OK 1732 1735 1736 1754 C3' G A 82 OK 1752 1755 1756 1777 C3' A A 83 OK 1775 1778 1779 1799 C3' A A 84 OK 1797 1800 1801 1821 C3' A A 85 OK 1819 1822 1823 1843 C3' G A 86 OK 1841 1844 1845 1866 C3' A A 87 OK 1864 1867 1868 1888 C3' U A 88 OK 1886 1889 1890 1908 C3' G A 89 OK 1906 1909 1910 1931 C3' A A 90 OK 1929 1932 1933 1953 C3' G A 91 OK 1951 1954 1955 1976 C3' C A 92 OK 1974 1977 1978 1996 C3' C A 93 OK 1994 1997 1998 2016 C3' G A 94 OK 2014 2017 2018 2045 C3' SAM A1095 OK 2043 2046 2047 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 7 C4' G A 1 OK 9 6 8 30 C4' G A 2 OK 32 29 31 53 C4' C A 3 OK 55 52 54 73 C4' U A 4 OK 75 72 74 93 C4' U A 5 OK 95 92 94 113 C4' A A 6 OK 115 112 114 135 C4' U A 7 OK 137 134 136 155 C4' C A 8 OK 157 154 156 175 C4' A A 9 OK 177 174 176 197 C4' A A 10 OK 199 196 198 219 C4' G A 11 OK 221 218 220 242 C4' A A 12 OK 244 241 243 264 C4' G A 13 OK 266 263 265 287 C4' A A 14 OK 289 286 288 309 C4' G A 15 OK 311 308 310 332 C4' G A 16 OK 334 331 333 355 C4' G A 17 OK 357 354 356 378 C4' G A 18 OK 380 377 379 401 C4' G A 19 OK 403 400 402 424 C4' A A 20 OK 426 423 425 446 C4' G A 21 OK 448 445 447 469 C4' U A 22 OK 471 468 470 489 C4' G A 23 OK 491 488 490 512 C4' A A 24 OK 514 511 513 534 C4' C A 25 OK 536 533 535 554 C4' U A 26 OK 556 553 555 574 C4' G A 27 OK 576 573 575 597 C4' G A 28 OK 599 596 598 620 C4' C A 29 OK 622 619 621 640 C4' G A 30 OK 642 639 641 663 C4' C A 31 OK 665 662 664 683 C4' G A 32 OK 685 682 684 706 C4' A A 33 OK 708 705 707 728 C4' A A 34 OK 730 727 729 750 C4' G A 35 OK 752 749 751 773 C4' A A 36 OK 775 772 774 795 C4' C A 37 OK 797 794 796 815 C4' C A 38 OK 817 814 816 835 C4' C A 39 OK 837 834 836 855 C4' C A 40 OK 857 854 856 875 C4' C A 41 OK 877 874 876 895 C4' G A 42 OK 897 894 896 918 C4' G A 43 OK 920 917 919 941 C4' C A 44 OK 943 940 942 961 C4' A A 45 OK 963 960 962 983 C4' A A 46 OK 985 982 984 1005 C4' C A 47 OK 1007 1004 1006 1025 C4' C A 48 OK 1027 1024 1026 1045 C4' A A 49 OK 1047 1044 1046 1067 C4' G A 50 OK 1069 1066 1068 1090 C4' A A 51 OK 1092 1089 1091 1112 C4' A A 52 OK 1114 1111 1113 1134 C4' A A 53 OK 1136 1133 1135 1156 C4' U A 54 OK 1158 1155 1157 1176 C4' G A 55 OK 1178 1175 1177 1199 C4' G A 56 OK 1201 1198 1200 1222 C4' U A 57 OK 1224 1221 1223 1242 C4' G A 58 OK 1244 1241 1243 1265 C4' C A 59 OK 1267 1264 1266 1285 C4' C A 60 OK 1287 1284 1286 1305 C4' A A 61 OK 1307 1304 1306 1327 C4' A A 62 OK 1329 1326 1328 1349 C4' U A 63 OK 1351 1348 1350 1369 C4' U A 64 OK 1371 1368 1370 1389 C4' C A 65 OK 1391 1388 1390 1409 C4' C A 66 OK 1411 1408 1410 1429 C4' U A 67 OK 1431 1428 1430 1449 C4' G A 68 OK 1451 1448 1450 1472 C4' C A 69 OK 1474 1471 1473 1492 C4' A A 70 OK 1494 1491 1493 1514 C4' G A 71 OK 1516 1513 1515 1537 C4' C A 72 OK 1539 1536 1538 1557 C4' G A 73 OK 1559 1556 1558 1580 C4' G A 74 OK 1582 1579 1581 1603 C4' A A 75 OK 1605 1602 1604 1625 C4' A A 76 OK 1627 1624 1626 1647 C4' A A 77 OK 1649 1646 1648 1669 C4' C A 78 OK 1671 1668 1670 1689 C4' G A 79 OK 1691 1688 1690 1712 C4' U A 80 OK 1714 1711 1713 1732 C4' U A 81 OK 1734 1731 1733 1752 C4' G A 82 OK 1754 1751 1753 1775 C4' A A 83 OK 1777 1774 1776 1797 C4' A A 84 OK 1799 1796 1798 1819 C4' A A 85 OK 1821 1818 1820 1841 C4' G A 86 OK 1843 1840 1842 1864 C4' A A 87 OK 1866 1863 1865 1886 C4' U A 88 OK 1888 1885 1887 1906 C4' G A 89 OK 1908 1905 1907 1929 C4' A A 90 OK 1931 1928 1930 1951 C4' G A 91 OK 1953 1950 1952 1974 C4' C A 92 OK 1976 1973 1975 1994 C4' C A 93 OK 1996 1993 1995 2014 C4' G A 94 OK 2016 2013 2015 2043 C4' SAM A1095 OK 2045 2042 2044 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 6 C5' G A 1 5 7 29 C5' G A 2 28 30 52 C5' C A 3 51 53 72 C5' U A 4 71 73 92 C5' U A 5 91 93 112 C5' A A 6 111 113 134 C5' U A 7 133 135 154 C5' C A 8 153 155 174 C5' A A 9 173 175 196 C5' A A 10 195 197 218 C5' G A 11 217 219 241 C5' A A 12 240 242 263 C5' G A 13 262 264 286 C5' A A 14 285 287 308 C5' G A 15 307 309 331 C5' G A 16 330 332 354 C5' G A 17 353 355 377 C5' G A 18 376 378 400 C5' G A 19 399 401 423 C5' A A 20 422 424 445 C5' G A 21 444 446 468 C5' U A 22 467 469 488 C5' G A 23 487 489 511 C5' A A 24 510 512 533 C5' C A 25 532 534 553 C5' U A 26 552 554 573 C5' G A 27 572 574 596 C5' G A 28 595 597 619 C5' C A 29 618 620 639 C5' G A 30 638 640 662 C5' C A 31 661 663 682 C5' G A 32 681 683 705 C5' A A 33 704 706 727 C5' A A 34 726 728 749 C5' G A 35 748 750 772 C5' A A 36 771 773 794 C5' C A 37 793 795 814 C5' C A 38 813 815 834 C5' C A 39 833 835 854 C5' C A 40 853 855 874 C5' C A 41 873 875 894 C5' G A 42 893 895 917 C5' G A 43 916 918 940 C5' C A 44 939 941 960 C5' A A 45 959 961 982 C5' A A 46 981 983 1004 C5' C A 47 1003 1005 1024 C5' C A 48 1023 1025 1044 C5' A A 49 1043 1045 1066 C5' G A 50 1065 1067 1089 C5' A A 51 1088 1090 1111 C5' A A 52 1110 1112 1133 C5' A A 53 1132 1134 1155 C5' U A 54 1154 1156 1175 C5' G A 55 1174 1176 1198 C5' G A 56 1197 1199 1221 C5' U A 57 1220 1222 1241 C5' G A 58 1240 1242 1264 C5' C A 59 1263 1265 1284 C5' C A 60 1283 1285 1304 C5' A A 61 1303 1305 1326 C5' A A 62 1325 1327 1348 C5' U A 63 1347 1349 1368 C5' U A 64 1367 1369 1388 C5' C A 65 1387 1389 1408 C5' C A 66 1407 1409 1428 C5' U A 67 1427 1429 1448 C5' G A 68 1447 1449 1471 C5' C A 69 1470 1472 1491 C5' A A 70 1490 1492 1513 C5' G A 71 1512 1514 1536 C5' C A 72 1535 1537 1556 C5' G A 73 1555 1557 1579 C5' G A 74 1578 1580 1602 C5' A A 75 1601 1603 1624 C5' A A 76 1623 1625 1646 C5' A A 77 1645 1647 1668 C5' C A 78 1667 1669 1688 C5' G A 79 1687 1689 1711 C5' U A 80 1710 1712 1731 C5' U A 81 1730 1732 1751 C5' G A 82 1750 1752 1774 C5' A A 83 1773 1775 1796 C5' A A 84 1795 1797 1818 C5' A A 85 1817 1819 1840 C5' G A 86 1839 1841 1863 C5' A A 87 1862 1864 1885 C5' U A 88 1884 1886 1905 C5' G A 89 1904 1906 1928 C5' A A 90 1927 1929 1950 C5' G A 91 1949 1951 1973 C5' C A 92 1972 1974 1993 C5' C A 93 1992 1994 2013 C5' G A 94 2012 2014 2042 C5' SAM A1095 2043 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 2 P G A 1 distorted distorted 3 4 5 25 P G A 2 distorted distorted 10 26 27 28 48 P C A 3 distorted distorted 33 49 50 51 68 P U A 4 distorted distorted 56 69 70 71 88 P U A 5 distorted distorted 76 89 90 91 108 P A A 6 distorted distorted 96 109 110 111 130 P U A 7 distorted distorted 116 131 132 133 150 P C A 8 distorted distorted 138 151 152 153 170 P A A 9 distorted distorted 158 171 172 173 192 P A A 10 distorted distorted 178 193 194 195 214 P G A 11 distorted distorted 200 215 216 217 237 P A A 12 distorted distorted 222 238 239 240 259 P G A 13 distorted distorted 245 260 261 262 282 P A A 14 distorted distorted 267 283 284 285 304 P G A 15 distorted distorted 290 305 306 307 327 P G A 16 distorted distorted 312 328 329 330 350 P G A 17 distorted distorted 335 351 352 353 373 P G A 18 distorted distorted 358 374 375 376 396 P G A 19 distorted distorted 381 397 398 399 419 P A A 20 distorted distorted 404 420 421 422 441 P G A 21 distorted distorted 427 442 443 444 464 P U A 22 distorted distorted 449 465 466 467 484 P G A 23 distorted distorted 472 485 486 487 507 P A A 24 distorted distorted 492 508 509 510 529 P C A 25 distorted distorted 515 530 531 532 549 P U A 26 distorted distorted 537 550 551 552 569 P G A 27 distorted distorted 557 570 571 572 592 P G A 28 distorted distorted 577 593 594 595 615 P C A 29 distorted distorted 600 616 617 618 635 P G A 30 distorted distorted 623 636 637 638 658 P C A 31 distorted distorted 643 659 660 661 678 P G A 32 distorted distorted 666 679 680 681 701 P A A 33 distorted distorted 686 702 703 704 723 P A A 34 distorted distorted 709 724 725 726 745 P G A 35 distorted distorted 731 746 747 748 768 P A A 36 distorted distorted 753 769 770 771 790 P C A 37 distorted distorted 776 791 792 793 810 P C A 38 distorted distorted 798 811 812 813 830 P C A 39 distorted distorted 818 831 832 833 850 P C A 40 distorted distorted 838 851 852 853 870 P C A 41 distorted distorted 858 871 872 873 890 P G A 42 distorted distorted 878 891 892 893 913 P G A 43 distorted distorted 898 914 915 916 936 P C A 44 distorted distorted 921 937 938 939 956 P A A 45 distorted distorted 944 957 958 959 978 P A A 46 distorted distorted 964 979 980 981 1000 P C A 47 distorted distorted 986 1001 1002 1003 1020 P C A 48 distorted distorted 1008 1021 1022 1023 1040 P A A 49 distorted distorted 1028 1041 1042 1043 1062 P G A 50 distorted distorted 1048 1063 1064 1065 1085 P A A 51 distorted distorted 1070 1086 1087 1088 1107 P A A 52 distorted distorted 1093 1108 1109 1110 1129 P A A 53 distorted distorted 1115 1130 1131 1132 1151 P U A 54 distorted distorted 1137 1152 1153 1154 1171 P G A 55 distorted distorted 1159 1172 1173 1174 1194 P G A 56 distorted distorted 1179 1195 1196 1197 1217 P U A 57 distorted distorted 1202 1218 1219 1220 1237 P G A 58 distorted distorted 1225 1238 1239 1240 1260 P C A 59 distorted distorted 1245 1261 1262 1263 1280 P C A 60 distorted distorted 1268 1281 1282 1283 1300 P A A 61 distorted distorted 1288 1301 1302 1303 1322 P A A 62 distorted distorted 1308 1323 1324 1325 1344 P U A 63 distorted distorted 1330 1345 1346 1347 1364 P U A 64 distorted distorted 1352 1365 1366 1367 1384 P C A 65 distorted distorted 1372 1385 1386 1387 1404 P C A 66 distorted distorted 1392 1405 1406 1407 1424 P U A 67 distorted distorted 1412 1425 1426 1427 1444 P G A 68 distorted distorted 1432 1445 1446 1447 1467 P C A 69 distorted distorted 1452 1468 1469 1470 1487 P A A 70 distorted distorted 1475 1488 1489 1490 1509 P G A 71 distorted distorted 1495 1510 1511 1512 1532 P C A 72 distorted distorted 1517 1533 1534 1535 1552 P G A 73 distorted distorted 1540 1553 1554 1555 1575 P G A 74 distorted distorted 1560 1576 1577 1578 1598 P A A 75 distorted distorted 1583 1599 1600 1601 1620 P A A 76 distorted distorted 1606 1621 1622 1623 1642 P A A 77 distorted distorted 1628 1643 1644 1645 1664 P C A 78 distorted distorted 1650 1665 1666 1667 1684 P G A 79 distorted distorted 1672 1685 1686 1687 1707 P U A 80 distorted distorted 1692 1708 1709 1710 1727 P U A 81 distorted distorted 1715 1728 1729 1730 1747 P G A 82 distorted distorted 1735 1748 1749 1750 1770 P A A 83 distorted distorted 1755 1771 1772 1773 1792 P A A 84 distorted distorted 1778 1793 1794 1795 1814 P A A 85 distorted distorted 1800 1815 1816 1817 1836 P G A 86 distorted distorted 1822 1837 1838 1839 1859 P A A 87 distorted distorted 1844 1860 1861 1862 1881 P U A 88 distorted distorted 1867 1882 1883 1884 1901 P G A 89 distorted distorted 1889 1902 1903 1904 1924 P A A 90 distorted distorted 1909 1925 1926 1927 1946 P G A 91 distorted distorted 1932 1947 1948 1949 1969 P C A 92 distorted distorted 1954 1970 1971 1972 1989 P C A 93 distorted distorted 1977 1990 1991 1992 2009 P G A 94 distorted distorted 1997 2010 2011 2012 ---------------------------------------------------------------------------------