ID code: '5FJ1' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 9 C1' U A 1 beta 4 10 7 29 C1' G A 2 beta 24 30 27 52 C1' G A 3 beta 47 53 50 75 C1' G A 4 beta 70 76 73 98 C1' G A 5 beta 93 99 96 121 C1' A A 6 beta 116 122 119 143 C1' G A 7 beta 138 144 141 166 C1' C A 8 beta 161 167 164 186 C1' C A 9 beta 181 187 184 206 C1' G A 10 beta 201 207 204 229 C1' A A 11 beta 224 230 227 251 C1' A A 12 beta 246 252 249 273 C1' A A 13 beta 268 274 271 295 C1' G A 14 beta 290 296 293 318 C1' G A 15 beta 313 319 316 341 C1' C A 16 beta 336 342 339 361 C1' G A 17 beta 356 362 359 384 C1' A A 18 beta 379 385 382 406 C1' A A 19 beta 401 407 404 428 C1' G A 20 beta 423 429 426 451 C1' A A 21 beta 446 452 449 473 C1' A A 22 beta 468 474 471 495 C1' C A 23 beta 490 496 493 515 C1' C A 24 beta 510 516 513 533 C1' U B 1 beta 528 534 531 553 C1' G B 2 beta 548 554 551 576 C1' G B 3 beta 571 577 574 599 C1' G B 4 beta 594 600 597 622 C1' G B 5 beta 617 623 620 645 C1' A B 6 beta 640 646 643 667 C1' G B 7 beta 662 668 665 690 C1' C B 8 beta 685 691 688 710 C1' C B 9 beta 705 711 708 730 C1' G B 10 beta 725 731 728 753 C1' A B 11 beta 748 754 751 775 C1' A B 12 beta 770 776 773 797 C1' A B 13 beta 792 798 795 819 C1' G B 14 beta 814 820 817 842 C1' G B 15 beta 837 843 840 865 C1' C B 16 beta 860 866 863 885 C1' G B 17 beta 880 886 883 908 C1' A B 18 beta 903 909 906 930 C1' A B 19 beta 925 931 928 952 C1' G B 20 beta 947 953 950 975 C1' A B 21 beta 970 976 973 997 C1' A B 22 beta 992 998 995 1019 C1' C B 23 beta 1014 1020 1017 1039 C1' C B 24 beta 1034 1040 1037 1057 C1' U C 1 beta 1052 1058 1055 1077 C1' G C 2 beta 1072 1078 1075 1100 C1' G C 3 beta 1095 1101 1098 1123 C1' G C 4 beta 1118 1124 1121 1146 C1' G C 5 beta 1141 1147 1144 1169 C1' A C 6 beta 1164 1170 1167 1191 C1' G C 7 beta 1186 1192 1189 1214 C1' C C 8 beta 1209 1215 1212 1234 C1' C C 9 beta 1229 1235 1232 1254 C1' G C 10 beta 1249 1255 1252 1277 C1' A C 11 beta 1272 1278 1275 1299 C1' A C 12 beta 1294 1300 1297 1321 C1' A C 13 beta 1316 1322 1319 1343 C1' G C 14 beta 1338 1344 1341 1366 C1' G C 15 beta 1361 1367 1364 1389 C1' C C 16 beta 1384 1390 1387 1409 C1' G C 17 beta 1404 1410 1407 1432 C1' A C 18 beta 1427 1433 1430 1454 C1' A C 19 beta 1449 1455 1452 1476 C1' G C 20 beta 1471 1477 1474 1499 C1' A C 21 beta 1494 1500 1497 1521 C1' A C 22 beta 1516 1522 1519 1543 C1' C C 23 beta 1538 1544 1541 1563 C1' C C 24 beta 1558 1564 1561 1581 C1' U D 1 beta 1576 1582 1579 1601 C1' G D 2 beta 1596 1602 1599 1624 C1' G D 3 beta 1619 1625 1622 1647 C1' G D 4 beta 1642 1648 1645 1670 C1' G D 5 beta 1665 1671 1668 1693 C1' A D 6 beta 1688 1694 1691 1715 C1' G D 7 beta 1710 1716 1713 1738 C1' C D 8 beta 1733 1739 1736 1758 C1' C D 9 beta 1753 1759 1756 1778 C1' G D 10 beta 1773 1779 1776 1801 C1' A D 11 beta 1796 1802 1799 1823 C1' A D 12 beta 1818 1824 1821 1845 C1' A D 13 beta 1840 1846 1843 1867 C1' G D 14 beta 1862 1868 1865 1890 C1' G D 15 beta 1885 1891 1888 1913 C1' C D 16 beta 1908 1914 1911 1933 C1' G D 17 beta 1928 1934 1931 1956 C1' A D 18 beta 1951 1957 1954 1978 C1' A D 19 beta 1973 1979 1976 2000 C1' G D 20 beta 1995 2001 1998 2023 C1' A D 21 beta 2018 2024 2021 2045 C1' A D 22 beta 2040 2046 2043 2067 C1' C D 23 beta 2062 2068 2065 2087 C1' C D 24 beta 2082 2088 2085 2105 C1' U E 1 beta 2100 2106 2103 2125 C1' G E 2 beta 2120 2126 2123 2148 C1' G E 3 beta 2143 2149 2146 2171 C1' G E 4 beta 2166 2172 2169 2194 C1' G E 5 beta 2189 2195 2192 2217 C1' A E 6 beta 2212 2218 2215 2239 C1' G E 7 beta 2234 2240 2237 2262 C1' C E 8 beta 2257 2263 2260 2282 C1' C E 9 beta 2277 2283 2280 2302 C1' G E 10 beta 2297 2303 2300 2325 C1' A E 11 beta 2320 2326 2323 2347 C1' A E 12 beta 2342 2348 2345 2369 C1' A E 13 beta 2364 2370 2367 2391 C1' G E 14 beta 2386 2392 2389 2414 C1' G E 15 beta 2409 2415 2412 2437 C1' C E 16 beta 2432 2438 2435 2457 C1' G E 17 beta 2452 2458 2455 2480 C1' A E 18 beta 2475 2481 2478 2502 C1' A E 19 beta 2497 2503 2500 2524 C1' G E 20 beta 2519 2525 2522 2547 C1' A E 21 beta 2542 2548 2545 2569 C1' A E 22 beta 2564 2570 2567 2591 C1' C E 23 beta 2586 2592 2589 2611 C1' C E 24 beta 2606 2612 2609 2629 C1' U F 1 beta 2624 2630 2627 2649 C1' G F 2 beta 2644 2650 2647 2672 C1' G F 3 beta 2667 2673 2670 2695 C1' G F 4 beta 2690 2696 2693 2718 C1' G F 5 beta 2713 2719 2716 2741 C1' A F 6 beta 2736 2742 2739 2763 C1' G F 7 beta 2758 2764 2761 2786 C1' C F 8 beta 2781 2787 2784 2806 C1' C F 9 beta 2801 2807 2804 2826 C1' G F 10 beta 2821 2827 2824 2849 C1' A F 11 beta 2844 2850 2847 2871 C1' A F 12 beta 2866 2872 2869 2893 C1' A F 13 beta 2888 2894 2891 2915 C1' G F 14 beta 2910 2916 2913 2938 C1' G F 15 beta 2933 2939 2936 2961 C1' C F 16 beta 2956 2962 2959 2981 C1' G F 17 beta 2976 2982 2979 3004 C1' A F 18 beta 2999 3005 3002 3026 C1' A F 19 beta 3021 3027 3024 3048 C1' G F 20 beta 3043 3049 3046 3071 C1' A F 21 beta 3066 3072 3069 3093 C1' A F 22 beta 3088 3094 3091 3115 C1' C F 23 beta 3110 3116 3113 3135 C1' C F 24 beta 3130 3136 3133 3153 C1' U G 1 beta 3148 3154 3151 3173 C1' G G 2 beta 3168 3174 3171 3196 C1' G G 3 beta 3191 3197 3194 3219 C1' G G 4 beta 3214 3220 3217 3242 C1' G G 5 beta 3237 3243 3240 3265 C1' A G 6 beta 3260 3266 3263 3287 C1' G G 7 beta 3282 3288 3285 3310 C1' C G 8 beta 3305 3311 3308 3330 C1' C G 9 beta 3325 3331 3328 3350 C1' G G 10 beta 3345 3351 3348 3373 C1' A G 11 beta 3368 3374 3371 3395 C1' A G 12 beta 3390 3396 3393 3417 C1' A G 13 beta 3412 3418 3415 3439 C1' G G 14 beta 3434 3440 3437 3462 C1' G G 15 beta 3457 3463 3460 3485 C1' C G 16 beta 3480 3486 3483 3505 C1' G G 17 beta 3500 3506 3503 3528 C1' A G 18 beta 3523 3529 3526 3550 C1' A G 19 beta 3545 3551 3548 3572 C1' G G 20 beta 3567 3573 3570 3595 C1' A G 21 beta 3590 3596 3593 3617 C1' A G 22 beta 3612 3618 3615 3639 C1' C G 23 beta 3634 3640 3637 3659 C1' C G 24 beta 3654 3660 3657 3677 C1' U H 1 beta 3672 3678 3675 3697 C1' G H 2 beta 3692 3698 3695 3720 C1' G H 3 beta 3715 3721 3718 3743 C1' G H 4 beta 3738 3744 3741 3766 C1' G H 5 beta 3761 3767 3764 3789 C1' A H 6 beta 3784 3790 3787 3811 C1' G H 7 beta 3806 3812 3809 3834 C1' C H 8 beta 3829 3835 3832 3854 C1' C H 9 beta 3849 3855 3852 3874 C1' G H 10 beta 3869 3875 3872 3897 C1' A H 11 beta 3892 3898 3895 3919 C1' A H 12 beta 3914 3920 3917 3941 C1' A H 13 beta 3936 3942 3939 3963 C1' G H 14 beta 3958 3964 3961 3986 C1' G H 15 beta 3981 3987 3984 4009 C1' C H 16 beta 4004 4010 4007 4029 C1' G H 17 beta 4024 4030 4027 4052 C1' A H 18 beta 4047 4053 4050 4074 C1' A H 19 beta 4069 4075 4072 4096 C1' G H 20 beta 4091 4097 4094 4119 C1' A H 21 beta 4114 4120 4117 4141 C1' A H 22 beta 4136 4142 4139 4163 C1' C H 23 beta 4158 4164 4161 4183 C1' C H 24 beta 4178 4184 4181 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 7 C2' U A 1 OK 9 5 8 27 C2' G A 2 OK 29 25 28 50 C2' G A 3 OK 52 48 51 73 C2' G A 4 OK 75 71 74 96 C2' G A 5 OK 98 94 97 119 C2' A A 6 OK 121 117 120 141 C2' G A 7 OK 143 139 142 164 C2' C A 8 OK 166 162 165 184 C2' C A 9 OK 186 182 185 204 C2' G A 10 OK 206 202 205 227 C2' A A 11 OK 229 225 228 249 C2' A A 12 OK 251 247 250 271 C2' A A 13 OK 273 269 272 293 C2' G A 14 OK 295 291 294 316 C2' G A 15 OK 318 314 317 339 C2' C A 16 OK 341 337 340 359 C2' G A 17 OK 361 357 360 382 C2' A A 18 OK 384 380 383 404 C2' A A 19 OK 406 402 405 426 C2' G A 20 OK 428 424 427 449 C2' A A 21 OK 451 447 450 471 C2' A A 22 OK 473 469 472 493 C2' C A 23 OK 495 491 494 513 C2' C A 24 OK 515 511 514 531 C2' U B 1 OK 533 529 532 551 C2' G B 2 OK 553 549 552 574 C2' G B 3 OK 576 572 575 597 C2' G B 4 OK 599 595 598 620 C2' G B 5 OK 622 618 621 643 C2' A B 6 OK 645 641 644 665 C2' G B 7 OK 667 663 666 688 C2' C B 8 OK 690 686 689 708 C2' C B 9 OK 710 706 709 728 C2' G B 10 OK 730 726 729 751 C2' A B 11 OK 753 749 752 773 C2' A B 12 OK 775 771 774 795 C2' A B 13 OK 797 793 796 817 C2' G B 14 OK 819 815 818 840 C2' G B 15 OK 842 838 841 863 C2' C B 16 OK 865 861 864 883 C2' G B 17 OK 885 881 884 906 C2' A B 18 OK 908 904 907 928 C2' A B 19 OK 930 926 929 950 C2' G B 20 OK 952 948 951 973 C2' A B 21 OK 975 971 974 995 C2' A B 22 OK 997 993 996 1017 C2' C B 23 OK 1019 1015 1018 1037 C2' C B 24 OK 1039 1035 1038 1055 C2' U C 1 OK 1057 1053 1056 1075 C2' G C 2 OK 1077 1073 1076 1098 C2' G C 3 OK 1100 1096 1099 1121 C2' G C 4 OK 1123 1119 1122 1144 C2' G C 5 OK 1146 1142 1145 1167 C2' A C 6 OK 1169 1165 1168 1189 C2' G C 7 OK 1191 1187 1190 1212 C2' C C 8 OK 1214 1210 1213 1232 C2' C C 9 OK 1234 1230 1233 1252 C2' G C 10 OK 1254 1250 1253 1275 C2' A C 11 OK 1277 1273 1276 1297 C2' A C 12 OK 1299 1295 1298 1319 C2' A C 13 OK 1321 1317 1320 1341 C2' G C 14 OK 1343 1339 1342 1364 C2' G C 15 OK 1366 1362 1365 1387 C2' C C 16 OK 1389 1385 1388 1407 C2' G C 17 OK 1409 1405 1408 1430 C2' A C 18 OK 1432 1428 1431 1452 C2' A C 19 OK 1454 1450 1453 1474 C2' G C 20 OK 1476 1472 1475 1497 C2' A C 21 OK 1499 1495 1498 1519 C2' A C 22 OK 1521 1517 1520 1541 C2' C C 23 OK 1543 1539 1542 1561 C2' C C 24 OK 1563 1559 1562 1579 C2' U D 1 OK 1581 1577 1580 1599 C2' G D 2 OK 1601 1597 1600 1622 C2' G D 3 OK 1624 1620 1623 1645 C2' G D 4 OK 1647 1643 1646 1668 C2' G D 5 OK 1670 1666 1669 1691 C2' A D 6 OK 1693 1689 1692 1713 C2' G D 7 OK 1715 1711 1714 1736 C2' C D 8 OK 1738 1734 1737 1756 C2' C D 9 OK 1758 1754 1757 1776 C2' G D 10 OK 1778 1774 1777 1799 C2' A D 11 OK 1801 1797 1800 1821 C2' A D 12 OK 1823 1819 1822 1843 C2' A D 13 OK 1845 1841 1844 1865 C2' G D 14 OK 1867 1863 1866 1888 C2' G D 15 OK 1890 1886 1889 1911 C2' C D 16 OK 1913 1909 1912 1931 C2' G D 17 OK 1933 1929 1932 1954 C2' A D 18 OK 1956 1952 1955 1976 C2' A D 19 OK 1978 1974 1977 1998 C2' G D 20 OK 2000 1996 1999 2021 C2' A D 21 OK 2023 2019 2022 2043 C2' A D 22 OK 2045 2041 2044 2065 C2' C D 23 OK 2067 2063 2066 2085 C2' C D 24 OK 2087 2083 2086 2103 C2' U E 1 OK 2105 2101 2104 2123 C2' G E 2 OK 2125 2121 2124 2146 C2' G E 3 OK 2148 2144 2147 2169 C2' G E 4 OK 2171 2167 2170 2192 C2' G E 5 OK 2194 2190 2193 2215 C2' A E 6 OK 2217 2213 2216 2237 C2' G E 7 OK 2239 2235 2238 2260 C2' C E 8 OK 2262 2258 2261 2280 C2' C E 9 OK 2282 2278 2281 2300 C2' G E 10 OK 2302 2298 2301 2323 C2' A E 11 OK 2325 2321 2324 2345 C2' A E 12 OK 2347 2343 2346 2367 C2' A E 13 OK 2369 2365 2368 2389 C2' G E 14 OK 2391 2387 2390 2412 C2' G E 15 OK 2414 2410 2413 2435 C2' C E 16 OK 2437 2433 2436 2455 C2' G E 17 OK 2457 2453 2456 2478 C2' A E 18 OK 2480 2476 2479 2500 C2' A E 19 OK 2502 2498 2501 2522 C2' G E 20 OK 2524 2520 2523 2545 C2' A E 21 OK 2547 2543 2546 2567 C2' A E 22 OK 2569 2565 2568 2589 C2' C E 23 OK 2591 2587 2590 2609 C2' C E 24 OK 2611 2607 2610 2627 C2' U F 1 OK 2629 2625 2628 2647 C2' G F 2 OK 2649 2645 2648 2670 C2' G F 3 OK 2672 2668 2671 2693 C2' G F 4 OK 2695 2691 2694 2716 C2' G F 5 OK 2718 2714 2717 2739 C2' A F 6 OK 2741 2737 2740 2761 C2' G F 7 OK 2763 2759 2762 2784 C2' C F 8 OK 2786 2782 2785 2804 C2' C F 9 OK 2806 2802 2805 2824 C2' G F 10 OK 2826 2822 2825 2847 C2' A F 11 OK 2849 2845 2848 2869 C2' A F 12 OK 2871 2867 2870 2891 C2' A F 13 OK 2893 2889 2892 2913 C2' G F 14 OK 2915 2911 2914 2936 C2' G F 15 OK 2938 2934 2937 2959 C2' C F 16 OK 2961 2957 2960 2979 C2' G F 17 OK 2981 2977 2980 3002 C2' A F 18 OK 3004 3000 3003 3024 C2' A F 19 OK 3026 3022 3025 3046 C2' G F 20 OK 3048 3044 3047 3069 C2' A F 21 OK 3071 3067 3070 3091 C2' A F 22 OK 3093 3089 3092 3113 C2' C F 23 OK 3115 3111 3114 3133 C2' C F 24 OK 3135 3131 3134 3151 C2' U G 1 OK 3153 3149 3152 3171 C2' G G 2 OK 3173 3169 3172 3194 C2' G G 3 OK 3196 3192 3195 3217 C2' G G 4 OK 3219 3215 3218 3240 C2' G G 5 OK 3242 3238 3241 3263 C2' A G 6 OK 3265 3261 3264 3285 C2' G G 7 OK 3287 3283 3286 3308 C2' C G 8 OK 3310 3306 3309 3328 C2' C G 9 OK 3330 3326 3329 3348 C2' G G 10 OK 3350 3346 3349 3371 C2' A G 11 OK 3373 3369 3372 3393 C2' A G 12 OK 3395 3391 3394 3415 C2' A G 13 OK 3417 3413 3416 3437 C2' G G 14 OK 3439 3435 3438 3460 C2' G G 15 OK 3462 3458 3461 3483 C2' C G 16 OK 3485 3481 3484 3503 C2' G G 17 OK 3505 3501 3504 3526 C2' A G 18 OK 3528 3524 3527 3548 C2' A G 19 OK 3550 3546 3549 3570 C2' G G 20 OK 3572 3568 3571 3593 C2' A G 21 OK 3595 3591 3594 3615 C2' A G 22 OK 3617 3613 3616 3637 C2' C G 23 OK 3639 3635 3638 3657 C2' C G 24 OK 3659 3655 3658 3675 C2' U H 1 OK 3677 3673 3676 3695 C2' G H 2 OK 3697 3693 3696 3718 C2' G H 3 OK 3720 3716 3719 3741 C2' G H 4 OK 3743 3739 3742 3764 C2' G H 5 OK 3766 3762 3765 3787 C2' A H 6 OK 3789 3785 3788 3809 C2' G H 7 OK 3811 3807 3810 3832 C2' C H 8 OK 3834 3830 3833 3852 C2' C H 9 OK 3854 3850 3853 3872 C2' G H 10 OK 3874 3870 3873 3895 C2' A H 11 OK 3897 3893 3896 3917 C2' A H 12 OK 3919 3915 3918 3939 C2' A H 13 OK 3941 3937 3940 3961 C2' G H 14 OK 3963 3959 3962 3984 C2' G H 15 OK 3986 3982 3985 4007 C2' C H 16 OK 4009 4005 4008 4027 C2' G H 17 OK 4029 4025 4028 4050 C2' A H 18 OK 4052 4048 4051 4072 C2' A H 19 OK 4074 4070 4073 4094 C2' G H 20 OK 4096 4092 4095 4117 C2' A H 21 OK 4119 4115 4118 4139 C2' A H 22 OK 4141 4137 4140 4161 C2' C H 23 OK 4163 4159 4162 4181 C2' C H 24 OK 4183 4179 4182 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 5 C3' U A 1 OK 3 6 7 25 C3' G A 2 OK 23 26 27 48 C3' G A 3 OK 46 49 50 71 C3' G A 4 OK 69 72 73 94 C3' G A 5 OK 92 95 96 117 C3' A A 6 OK 115 118 119 139 C3' G A 7 OK 137 140 141 162 C3' C A 8 OK 160 163 164 182 C3' C A 9 OK 180 183 184 202 C3' G A 10 OK 200 203 204 225 C3' A A 11 OK 223 226 227 247 C3' A A 12 OK 245 248 249 269 C3' A A 13 OK 267 270 271 291 C3' G A 14 OK 289 292 293 314 C3' G A 15 OK 312 315 316 337 C3' C A 16 OK 335 338 339 357 C3' G A 17 OK 355 358 359 380 C3' A A 18 OK 378 381 382 402 C3' A A 19 OK 400 403 404 424 C3' G A 20 OK 422 425 426 447 C3' A A 21 OK 445 448 449 469 C3' A A 22 OK 467 470 471 491 C3' C A 23 OK 489 492 493 511 C3' C A 24 OK 509 512 513 529 C3' U B 1 OK 527 530 531 549 C3' G B 2 OK 547 550 551 572 C3' G B 3 OK 570 573 574 595 C3' G B 4 OK 593 596 597 618 C3' G B 5 OK 616 619 620 641 C3' A B 6 OK 639 642 643 663 C3' G B 7 OK 661 664 665 686 C3' C B 8 OK 684 687 688 706 C3' C B 9 OK 704 707 708 726 C3' G B 10 OK 724 727 728 749 C3' A B 11 OK 747 750 751 771 C3' A B 12 OK 769 772 773 793 C3' A B 13 OK 791 794 795 815 C3' G B 14 OK 813 816 817 838 C3' G B 15 OK 836 839 840 861 C3' C B 16 OK 859 862 863 881 C3' G B 17 OK 879 882 883 904 C3' A B 18 OK 902 905 906 926 C3' A B 19 OK 924 927 928 948 C3' G B 20 OK 946 949 950 971 C3' A B 21 OK 969 972 973 993 C3' A B 22 OK 991 994 995 1015 C3' C B 23 OK 1013 1016 1017 1035 C3' C B 24 OK 1033 1036 1037 1053 C3' U C 1 OK 1051 1054 1055 1073 C3' G C 2 OK 1071 1074 1075 1096 C3' G C 3 OK 1094 1097 1098 1119 C3' G C 4 OK 1117 1120 1121 1142 C3' G C 5 OK 1140 1143 1144 1165 C3' A C 6 OK 1163 1166 1167 1187 C3' G C 7 OK 1185 1188 1189 1210 C3' C C 8 OK 1208 1211 1212 1230 C3' C C 9 OK 1228 1231 1232 1250 C3' G C 10 OK 1248 1251 1252 1273 C3' A C 11 OK 1271 1274 1275 1295 C3' A C 12 OK 1293 1296 1297 1317 C3' A C 13 OK 1315 1318 1319 1339 C3' G C 14 OK 1337 1340 1341 1362 C3' G C 15 OK 1360 1363 1364 1385 C3' C C 16 OK 1383 1386 1387 1405 C3' G C 17 OK 1403 1406 1407 1428 C3' A C 18 OK 1426 1429 1430 1450 C3' A C 19 OK 1448 1451 1452 1472 C3' G C 20 OK 1470 1473 1474 1495 C3' A C 21 OK 1493 1496 1497 1517 C3' A C 22 OK 1515 1518 1519 1539 C3' C C 23 OK 1537 1540 1541 1559 C3' C C 24 OK 1557 1560 1561 1577 C3' U D 1 OK 1575 1578 1579 1597 C3' G D 2 OK 1595 1598 1599 1620 C3' G D 3 OK 1618 1621 1622 1643 C3' G D 4 OK 1641 1644 1645 1666 C3' G D 5 OK 1664 1667 1668 1689 C3' A D 6 OK 1687 1690 1691 1711 C3' G D 7 OK 1709 1712 1713 1734 C3' C D 8 OK 1732 1735 1736 1754 C3' C D 9 OK 1752 1755 1756 1774 C3' G D 10 OK 1772 1775 1776 1797 C3' A D 11 OK 1795 1798 1799 1819 C3' A D 12 OK 1817 1820 1821 1841 C3' A D 13 OK 1839 1842 1843 1863 C3' G D 14 OK 1861 1864 1865 1886 C3' G D 15 OK 1884 1887 1888 1909 C3' C D 16 OK 1907 1910 1911 1929 C3' G D 17 OK 1927 1930 1931 1952 C3' A D 18 OK 1950 1953 1954 1974 C3' A D 19 OK 1972 1975 1976 1996 C3' G D 20 OK 1994 1997 1998 2019 C3' A D 21 OK 2017 2020 2021 2041 C3' A D 22 OK 2039 2042 2043 2063 C3' C D 23 OK 2061 2064 2065 2083 C3' C D 24 OK 2081 2084 2085 2101 C3' U E 1 OK 2099 2102 2103 2121 C3' G E 2 OK 2119 2122 2123 2144 C3' G E 3 OK 2142 2145 2146 2167 C3' G E 4 OK 2165 2168 2169 2190 C3' G E 5 OK 2188 2191 2192 2213 C3' A E 6 OK 2211 2214 2215 2235 C3' G E 7 OK 2233 2236 2237 2258 C3' C E 8 OK 2256 2259 2260 2278 C3' C E 9 OK 2276 2279 2280 2298 C3' G E 10 OK 2296 2299 2300 2321 C3' A E 11 OK 2319 2322 2323 2343 C3' A E 12 OK 2341 2344 2345 2365 C3' A E 13 OK 2363 2366 2367 2387 C3' G E 14 OK 2385 2388 2389 2410 C3' G E 15 OK 2408 2411 2412 2433 C3' C E 16 OK 2431 2434 2435 2453 C3' G E 17 OK 2451 2454 2455 2476 C3' A E 18 OK 2474 2477 2478 2498 C3' A E 19 OK 2496 2499 2500 2520 C3' G E 20 OK 2518 2521 2522 2543 C3' A E 21 OK 2541 2544 2545 2565 C3' A E 22 OK 2563 2566 2567 2587 C3' C E 23 OK 2585 2588 2589 2607 C3' C E 24 OK 2605 2608 2609 2625 C3' U F 1 OK 2623 2626 2627 2645 C3' G F 2 OK 2643 2646 2647 2668 C3' G F 3 OK 2666 2669 2670 2691 C3' G F 4 OK 2689 2692 2693 2714 C3' G F 5 OK 2712 2715 2716 2737 C3' A F 6 OK 2735 2738 2739 2759 C3' G F 7 OK 2757 2760 2761 2782 C3' C F 8 OK 2780 2783 2784 2802 C3' C F 9 OK 2800 2803 2804 2822 C3' G F 10 OK 2820 2823 2824 2845 C3' A F 11 OK 2843 2846 2847 2867 C3' A F 12 OK 2865 2868 2869 2889 C3' A F 13 OK 2887 2890 2891 2911 C3' G F 14 OK 2909 2912 2913 2934 C3' G F 15 OK 2932 2935 2936 2957 C3' C F 16 OK 2955 2958 2959 2977 C3' G F 17 OK 2975 2978 2979 3000 C3' A F 18 OK 2998 3001 3002 3022 C3' A F 19 OK 3020 3023 3024 3044 C3' G F 20 OK 3042 3045 3046 3067 C3' A F 21 OK 3065 3068 3069 3089 C3' A F 22 OK 3087 3090 3091 3111 C3' C F 23 OK 3109 3112 3113 3131 C3' C F 24 OK 3129 3132 3133 3149 C3' U G 1 OK 3147 3150 3151 3169 C3' G G 2 OK 3167 3170 3171 3192 C3' G G 3 OK 3190 3193 3194 3215 C3' G G 4 OK 3213 3216 3217 3238 C3' G G 5 OK 3236 3239 3240 3261 C3' A G 6 OK 3259 3262 3263 3283 C3' G G 7 OK 3281 3284 3285 3306 C3' C G 8 OK 3304 3307 3308 3326 C3' C G 9 OK 3324 3327 3328 3346 C3' G G 10 OK 3344 3347 3348 3369 C3' A G 11 OK 3367 3370 3371 3391 C3' A G 12 OK 3389 3392 3393 3413 C3' A G 13 OK 3411 3414 3415 3435 C3' G G 14 OK 3433 3436 3437 3458 C3' G G 15 OK 3456 3459 3460 3481 C3' C G 16 OK 3479 3482 3483 3501 C3' G G 17 OK 3499 3502 3503 3524 C3' A G 18 OK 3522 3525 3526 3546 C3' A G 19 OK 3544 3547 3548 3568 C3' G G 20 OK 3566 3569 3570 3591 C3' A G 21 OK 3589 3592 3593 3613 C3' A G 22 OK 3611 3614 3615 3635 C3' C G 23 OK 3633 3636 3637 3655 C3' C G 24 OK 3653 3656 3657 3673 C3' U H 1 OK 3671 3674 3675 3693 C3' G H 2 OK 3691 3694 3695 3716 C3' G H 3 OK 3714 3717 3718 3739 C3' G H 4 OK 3737 3740 3741 3762 C3' G H 5 OK 3760 3763 3764 3785 C3' A H 6 OK 3783 3786 3787 3807 C3' G H 7 OK 3805 3808 3809 3830 C3' C H 8 OK 3828 3831 3832 3850 C3' C H 9 OK 3848 3851 3852 3870 C3' G H 10 OK 3868 3871 3872 3893 C3' A H 11 OK 3891 3894 3895 3915 C3' A H 12 OK 3913 3916 3917 3937 C3' A H 13 OK 3935 3938 3939 3959 C3' G H 14 OK 3957 3960 3961 3982 C3' G H 15 OK 3980 3983 3984 4005 C3' C H 16 OK 4003 4006 4007 4025 C3' G H 17 OK 4023 4026 4027 4048 C3' A H 18 OK 4046 4049 4050 4070 C3' A H 19 OK 4068 4071 4072 4092 C3' G H 20 OK 4090 4093 4094 4115 C3' A H 21 OK 4113 4116 4117 4137 C3' A H 22 OK 4135 4138 4139 4159 C3' C H 23 OK 4157 4160 4161 4179 C3' C H 24 OK 4177 4180 4181 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 3 C4' U A 1 OK 5 2 4 23 C4' G A 2 OK 25 22 24 46 C4' G A 3 OK 48 45 47 69 C4' G A 4 OK 71 68 70 92 C4' G A 5 OK 94 91 93 115 C4' A A 6 OK 117 114 116 137 C4' G A 7 OK 139 136 138 160 C4' C A 8 OK 162 159 161 180 C4' C A 9 OK 182 179 181 200 C4' G A 10 OK 202 199 201 223 C4' A A 11 OK 225 222 224 245 C4' A A 12 OK 247 244 246 267 C4' A A 13 OK 269 266 268 289 C4' G A 14 OK 291 288 290 312 C4' G A 15 OK 314 311 313 335 C4' C A 16 OK 337 334 336 355 C4' G A 17 OK 357 354 356 378 C4' A A 18 OK 380 377 379 400 C4' A A 19 OK 402 399 401 422 C4' G A 20 OK 424 421 423 445 C4' A A 21 OK 447 444 446 467 C4' A A 22 OK 469 466 468 489 C4' C A 23 OK 491 488 490 509 C4' C A 24 OK 511 508 510 527 C4' U B 1 OK 529 526 528 547 C4' G B 2 OK 549 546 548 570 C4' G B 3 OK 572 569 571 593 C4' G B 4 OK 595 592 594 616 C4' G B 5 OK 618 615 617 639 C4' A B 6 OK 641 638 640 661 C4' G B 7 OK 663 660 662 684 C4' C B 8 OK 686 683 685 704 C4' C B 9 OK 706 703 705 724 C4' G B 10 OK 726 723 725 747 C4' A B 11 OK 749 746 748 769 C4' A B 12 OK 771 768 770 791 C4' A B 13 OK 793 790 792 813 C4' G B 14 OK 815 812 814 836 C4' G B 15 OK 838 835 837 859 C4' C B 16 OK 861 858 860 879 C4' G B 17 OK 881 878 880 902 C4' A B 18 OK 904 901 903 924 C4' A B 19 OK 926 923 925 946 C4' G B 20 OK 948 945 947 969 C4' A B 21 OK 971 968 970 991 C4' A B 22 OK 993 990 992 1013 C4' C B 23 OK 1015 1012 1014 1033 C4' C B 24 OK 1035 1032 1034 1051 C4' U C 1 OK 1053 1050 1052 1071 C4' G C 2 OK 1073 1070 1072 1094 C4' G C 3 OK 1096 1093 1095 1117 C4' G C 4 OK 1119 1116 1118 1140 C4' G C 5 OK 1142 1139 1141 1163 C4' A C 6 OK 1165 1162 1164 1185 C4' G C 7 OK 1187 1184 1186 1208 C4' C C 8 OK 1210 1207 1209 1228 C4' C C 9 OK 1230 1227 1229 1248 C4' G C 10 OK 1250 1247 1249 1271 C4' A C 11 OK 1273 1270 1272 1293 C4' A C 12 OK 1295 1292 1294 1315 C4' A C 13 OK 1317 1314 1316 1337 C4' G C 14 OK 1339 1336 1338 1360 C4' G C 15 OK 1362 1359 1361 1383 C4' C C 16 OK 1385 1382 1384 1403 C4' G C 17 OK 1405 1402 1404 1426 C4' A C 18 OK 1428 1425 1427 1448 C4' A C 19 OK 1450 1447 1449 1470 C4' G C 20 OK 1472 1469 1471 1493 C4' A C 21 OK 1495 1492 1494 1515 C4' A C 22 OK 1517 1514 1516 1537 C4' C C 23 OK 1539 1536 1538 1557 C4' C C 24 OK 1559 1556 1558 1575 C4' U D 1 OK 1577 1574 1576 1595 C4' G D 2 OK 1597 1594 1596 1618 C4' G D 3 OK 1620 1617 1619 1641 C4' G D 4 OK 1643 1640 1642 1664 C4' G D 5 OK 1666 1663 1665 1687 C4' A D 6 OK 1689 1686 1688 1709 C4' G D 7 OK 1711 1708 1710 1732 C4' C D 8 OK 1734 1731 1733 1752 C4' C D 9 OK 1754 1751 1753 1772 C4' G D 10 OK 1774 1771 1773 1795 C4' A D 11 OK 1797 1794 1796 1817 C4' A D 12 OK 1819 1816 1818 1839 C4' A D 13 OK 1841 1838 1840 1861 C4' G D 14 OK 1863 1860 1862 1884 C4' G D 15 OK 1886 1883 1885 1907 C4' C D 16 OK 1909 1906 1908 1927 C4' G D 17 OK 1929 1926 1928 1950 C4' A D 18 OK 1952 1949 1951 1972 C4' A D 19 OK 1974 1971 1973 1994 C4' G D 20 OK 1996 1993 1995 2017 C4' A D 21 OK 2019 2016 2018 2039 C4' A D 22 OK 2041 2038 2040 2061 C4' C D 23 OK 2063 2060 2062 2081 C4' C D 24 OK 2083 2080 2082 2099 C4' U E 1 OK 2101 2098 2100 2119 C4' G E 2 OK 2121 2118 2120 2142 C4' G E 3 OK 2144 2141 2143 2165 C4' G E 4 OK 2167 2164 2166 2188 C4' G E 5 OK 2190 2187 2189 2211 C4' A E 6 OK 2213 2210 2212 2233 C4' G E 7 OK 2235 2232 2234 2256 C4' C E 8 OK 2258 2255 2257 2276 C4' C E 9 OK 2278 2275 2277 2296 C4' G E 10 OK 2298 2295 2297 2319 C4' A E 11 OK 2321 2318 2320 2341 C4' A E 12 OK 2343 2340 2342 2363 C4' A E 13 OK 2365 2362 2364 2385 C4' G E 14 OK 2387 2384 2386 2408 C4' G E 15 OK 2410 2407 2409 2431 C4' C E 16 OK 2433 2430 2432 2451 C4' G E 17 OK 2453 2450 2452 2474 C4' A E 18 OK 2476 2473 2475 2496 C4' A E 19 OK 2498 2495 2497 2518 C4' G E 20 OK 2520 2517 2519 2541 C4' A E 21 OK 2543 2540 2542 2563 C4' A E 22 OK 2565 2562 2564 2585 C4' C E 23 OK 2587 2584 2586 2605 C4' C E 24 OK 2607 2604 2606 2623 C4' U F 1 OK 2625 2622 2624 2643 C4' G F 2 OK 2645 2642 2644 2666 C4' G F 3 OK 2668 2665 2667 2689 C4' G F 4 OK 2691 2688 2690 2712 C4' G F 5 OK 2714 2711 2713 2735 C4' A F 6 OK 2737 2734 2736 2757 C4' G F 7 OK 2759 2756 2758 2780 C4' C F 8 OK 2782 2779 2781 2800 C4' C F 9 OK 2802 2799 2801 2820 C4' G F 10 OK 2822 2819 2821 2843 C4' A F 11 OK 2845 2842 2844 2865 C4' A F 12 OK 2867 2864 2866 2887 C4' A F 13 OK 2889 2886 2888 2909 C4' G F 14 OK 2911 2908 2910 2932 C4' G F 15 OK 2934 2931 2933 2955 C4' C F 16 OK 2957 2954 2956 2975 C4' G F 17 OK 2977 2974 2976 2998 C4' A F 18 OK 3000 2997 2999 3020 C4' A F 19 OK 3022 3019 3021 3042 C4' G F 20 OK 3044 3041 3043 3065 C4' A F 21 OK 3067 3064 3066 3087 C4' A F 22 OK 3089 3086 3088 3109 C4' C F 23 OK 3111 3108 3110 3129 C4' C F 24 OK 3131 3128 3130 3147 C4' U G 1 OK 3149 3146 3148 3167 C4' G G 2 OK 3169 3166 3168 3190 C4' G G 3 OK 3192 3189 3191 3213 C4' G G 4 OK 3215 3212 3214 3236 C4' G G 5 OK 3238 3235 3237 3259 C4' A G 6 OK 3261 3258 3260 3281 C4' G G 7 OK 3283 3280 3282 3304 C4' C G 8 OK 3306 3303 3305 3324 C4' C G 9 OK 3326 3323 3325 3344 C4' G G 10 OK 3346 3343 3345 3367 C4' A G 11 OK 3369 3366 3368 3389 C4' A G 12 OK 3391 3388 3390 3411 C4' A G 13 OK 3413 3410 3412 3433 C4' G G 14 OK 3435 3432 3434 3456 C4' G G 15 OK 3458 3455 3457 3479 C4' C G 16 OK 3481 3478 3480 3499 C4' G G 17 OK 3501 3498 3500 3522 C4' A G 18 OK 3524 3521 3523 3544 C4' A G 19 OK 3546 3543 3545 3566 C4' G G 20 OK 3568 3565 3567 3589 C4' A G 21 OK 3591 3588 3590 3611 C4' A G 22 OK 3613 3610 3612 3633 C4' C G 23 OK 3635 3632 3634 3653 C4' C G 24 OK 3655 3652 3654 3671 C4' U H 1 OK 3673 3670 3672 3691 C4' G H 2 OK 3693 3690 3692 3714 C4' G H 3 OK 3716 3713 3715 3737 C4' G H 4 OK 3739 3736 3738 3760 C4' G H 5 OK 3762 3759 3761 3783 C4' A H 6 OK 3785 3782 3784 3805 C4' G H 7 OK 3807 3804 3806 3828 C4' C H 8 OK 3830 3827 3829 3848 C4' C H 9 OK 3850 3847 3849 3868 C4' G H 10 OK 3870 3867 3869 3891 C4' A H 11 OK 3893 3890 3892 3913 C4' A H 12 OK 3915 3912 3914 3935 C4' A H 13 OK 3937 3934 3936 3957 C4' G H 14 OK 3959 3956 3958 3980 C4' G H 15 OK 3982 3979 3981 4003 C4' C H 16 OK 4005 4002 4004 4023 C4' G H 17 OK 4025 4022 4024 4046 C4' A H 18 OK 4048 4045 4047 4068 C4' A H 19 OK 4070 4067 4069 4090 C4' G H 20 OK 4092 4089 4091 4113 C4' A H 21 OK 4115 4112 4114 4135 C4' A H 22 OK 4137 4134 4136 4157 C4' C H 23 OK 4159 4156 4158 4177 C4' C H 24 OK 4179 4176 4178 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 2 C5' U A 1 1 3 22 C5' G A 2 21 23 45 C5' G A 3 44 46 68 C5' G A 4 67 69 91 C5' G A 5 90 92 114 C5' A A 6 113 115 136 C5' G A 7 135 137 159 C5' C A 8 158 160 179 C5' C A 9 178 180 199 C5' G A 10 198 200 222 C5' A A 11 221 223 244 C5' A A 12 243 245 266 C5' A A 13 265 267 288 C5' G A 14 287 289 311 C5' G A 15 310 312 334 C5' C A 16 333 335 354 C5' G A 17 353 355 377 C5' A A 18 376 378 399 C5' A A 19 398 400 421 C5' G A 20 420 422 444 C5' A A 21 443 445 466 C5' A A 22 465 467 488 C5' C A 23 487 489 508 C5' C A 24 507 509 526 C5' U B 1 525 527 546 C5' G B 2 545 547 569 C5' G B 3 568 570 592 C5' G B 4 591 593 615 C5' G B 5 614 616 638 C5' A B 6 637 639 660 C5' G B 7 659 661 683 C5' C B 8 682 684 703 C5' C B 9 702 704 723 C5' G B 10 722 724 746 C5' A B 11 745 747 768 C5' A B 12 767 769 790 C5' A B 13 789 791 812 C5' G B 14 811 813 835 C5' G B 15 834 836 858 C5' C B 16 857 859 878 C5' G B 17 877 879 901 C5' A B 18 900 902 923 C5' A B 19 922 924 945 C5' G B 20 944 946 968 C5' A B 21 967 969 990 C5' A B 22 989 991 1012 C5' C B 23 1011 1013 1032 C5' C B 24 1031 1033 1050 C5' U C 1 1049 1051 1070 C5' G C 2 1069 1071 1093 C5' G C 3 1092 1094 1116 C5' G C 4 1115 1117 1139 C5' G C 5 1138 1140 1162 C5' A C 6 1161 1163 1184 C5' G C 7 1183 1185 1207 C5' C C 8 1206 1208 1227 C5' C C 9 1226 1228 1247 C5' G C 10 1246 1248 1270 C5' A C 11 1269 1271 1292 C5' A C 12 1291 1293 1314 C5' A C 13 1313 1315 1336 C5' G C 14 1335 1337 1359 C5' G C 15 1358 1360 1382 C5' C C 16 1381 1383 1402 C5' G C 17 1401 1403 1425 C5' A C 18 1424 1426 1447 C5' A C 19 1446 1448 1469 C5' G C 20 1468 1470 1492 C5' A C 21 1491 1493 1514 C5' A C 22 1513 1515 1536 C5' C C 23 1535 1537 1556 C5' C C 24 1555 1557 1574 C5' U D 1 1573 1575 1594 C5' G D 2 1593 1595 1617 C5' G D 3 1616 1618 1640 C5' G D 4 1639 1641 1663 C5' G D 5 1662 1664 1686 C5' A D 6 1685 1687 1708 C5' G D 7 1707 1709 1731 C5' C D 8 1730 1732 1751 C5' C D 9 1750 1752 1771 C5' G D 10 1770 1772 1794 C5' A D 11 1793 1795 1816 C5' A D 12 1815 1817 1838 C5' A D 13 1837 1839 1860 C5' G D 14 1859 1861 1883 C5' G D 15 1882 1884 1906 C5' C D 16 1905 1907 1926 C5' G D 17 1925 1927 1949 C5' A D 18 1948 1950 1971 C5' A D 19 1970 1972 1993 C5' G D 20 1992 1994 2016 C5' A D 21 2015 2017 2038 C5' A D 22 2037 2039 2060 C5' C D 23 2059 2061 2080 C5' C D 24 2079 2081 2098 C5' U E 1 2097 2099 2118 C5' G E 2 2117 2119 2141 C5' G E 3 2140 2142 2164 C5' G E 4 2163 2165 2187 C5' G E 5 2186 2188 2210 C5' A E 6 2209 2211 2232 C5' G E 7 2231 2233 2255 C5' C E 8 2254 2256 2275 C5' C E 9 2274 2276 2295 C5' G E 10 2294 2296 2318 C5' A E 11 2317 2319 2340 C5' A E 12 2339 2341 2362 C5' A E 13 2361 2363 2384 C5' G E 14 2383 2385 2407 C5' G E 15 2406 2408 2430 C5' C E 16 2429 2431 2450 C5' G E 17 2449 2451 2473 C5' A E 18 2472 2474 2495 C5' A E 19 2494 2496 2517 C5' G E 20 2516 2518 2540 C5' A E 21 2539 2541 2562 C5' A E 22 2561 2563 2584 C5' C E 23 2583 2585 2604 C5' C E 24 2603 2605 2622 C5' U F 1 2621 2623 2642 C5' G F 2 2641 2643 2665 C5' G F 3 2664 2666 2688 C5' G F 4 2687 2689 2711 C5' G F 5 2710 2712 2734 C5' A F 6 2733 2735 2756 C5' G F 7 2755 2757 2779 C5' C F 8 2778 2780 2799 C5' C F 9 2798 2800 2819 C5' G F 10 2818 2820 2842 C5' A F 11 2841 2843 2864 C5' A F 12 2863 2865 2886 C5' A F 13 2885 2887 2908 C5' G F 14 2907 2909 2931 C5' G F 15 2930 2932 2954 C5' C F 16 2953 2955 2974 C5' G F 17 2973 2975 2997 C5' A F 18 2996 2998 3019 C5' A F 19 3018 3020 3041 C5' G F 20 3040 3042 3064 C5' A F 21 3063 3065 3086 C5' A F 22 3085 3087 3108 C5' C F 23 3107 3109 3128 C5' C F 24 3127 3129 3146 C5' U G 1 3145 3147 3166 C5' G G 2 3165 3167 3189 C5' G G 3 3188 3190 3212 C5' G G 4 3211 3213 3235 C5' G G 5 3234 3236 3258 C5' A G 6 3257 3259 3280 C5' G G 7 3279 3281 3303 C5' C G 8 3302 3304 3323 C5' C G 9 3322 3324 3343 C5' G G 10 3342 3344 3366 C5' A G 11 3365 3367 3388 C5' A G 12 3387 3389 3410 C5' A G 13 3409 3411 3432 C5' G G 14 3431 3433 3455 C5' G G 15 3454 3456 3478 C5' C G 16 3477 3479 3498 C5' G G 17 3497 3499 3521 C5' A G 18 3520 3522 3543 C5' A G 19 3542 3544 3565 C5' G G 20 3564 3566 3588 C5' A G 21 3587 3589 3610 C5' A G 22 3609 3611 3632 C5' C G 23 3631 3633 3652 C5' C G 24 3651 3653 3670 C5' U H 1 3669 3671 3690 C5' G H 2 3689 3691 3713 C5' G H 3 3712 3714 3736 C5' G H 4 3735 3737 3759 C5' G H 5 3758 3760 3782 C5' A H 6 3781 3783 3804 C5' G H 7 3803 3805 3827 C5' C H 8 3826 3828 3847 C5' C H 9 3846 3848 3867 C5' G H 10 3866 3868 3890 C5' A H 11 3889 3891 3912 C5' A H 12 3911 3913 3934 C5' A H 13 3933 3935 3956 C5' G H 14 3955 3957 3979 C5' G H 15 3978 3980 4002 C5' C H 16 4001 4003 4022 C5' G H 17 4021 4023 4045 C5' A H 18 4044 4046 4067 C5' A H 19 4066 4068 4089 C5' G H 20 4088 4090 4112 C5' A H 21 4111 4113 4134 C5' A H 22 4133 4135 4156 C5' C H 23 4155 4157 4176 C5' C H 24 4175 4177 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 18 P G A 2 distorted distorted 6 19 20 21 41 P G A 3 distorted distorted 26 42 43 44 64 P G A 4 distorted distorted 49 65 66 67 87 P G A 5 distorted distorted 72 88 89 90 110 P A A 6 distorted distorted 95 111 112 113 132 P G A 7 distorted distorted 118 133 134 135 155 P C A 8 distorted distorted 140 156 157 158 175 P C A 9 OK OK 163 176 177 178 195 P G A 10 distorted distorted 183 196 197 198 218 P A A 11 OK OK 203 219 220 221 240 P A A 12 distorted distorted 226 241 242 243 262 P A A 13 distorted distorted 248 263 264 265 284 P G A 14 distorted distorted 270 285 286 287 307 P G A 15 distorted distorted 292 308 309 310 330 P C A 16 distorted distorted 315 331 332 333 350 P G A 17 OK OK 338 351 352 353 373 P A A 18 distorted distorted 358 374 375 376 395 P A A 19 distorted distorted 381 396 397 398 417 P G A 20 distorted distorted 403 418 419 420 440 P A A 21 distorted distorted 425 441 442 443 462 P A A 22 distorted distorted 448 463 464 465 484 P C A 23 distorted distorted 470 485 486 487 504 P C A 24 distorted distorted 492 505 506 507 542 P G B 2 distorted distorted 530 543 544 545 565 P G B 3 distorted distorted 550 566 567 568 588 P G B 4 distorted distorted 573 589 590 591 611 P G B 5 distorted distorted 596 612 613 614 634 P A B 6 distorted distorted 619 635 636 637 656 P G B 7 distorted distorted 642 657 658 659 679 P C B 8 distorted distorted 664 680 681 682 699 P C B 9 OK OK 687 700 701 702 719 P G B 10 distorted distorted 707 720 721 722 742 P A B 11 OK OK 727 743 744 745 764 P A B 12 distorted distorted 750 765 766 767 786 P A B 13 distorted distorted 772 787 788 789 808 P G B 14 distorted distorted 794 809 810 811 831 P G B 15 distorted distorted 816 832 833 834 854 P C B 16 distorted distorted 839 855 856 857 874 P G B 17 OK OK 862 875 876 877 897 P A B 18 distorted distorted 882 898 899 900 919 P A B 19 distorted distorted 905 920 921 922 941 P G B 20 distorted distorted 927 942 943 944 964 P A B 21 distorted distorted 949 965 966 967 986 P A B 22 distorted distorted 972 987 988 989 1008 P C B 23 distorted distorted 994 1009 1010 1011 1028 P C B 24 distorted distorted 1016 1029 1030 1031 1066 P G C 2 distorted distorted 1054 1067 1068 1069 1089 P G C 3 distorted distorted 1074 1090 1091 1092 1112 P G C 4 distorted distorted 1097 1113 1114 1115 1135 P G C 5 distorted distorted 1120 1136 1137 1138 1158 P A C 6 distorted distorted 1143 1159 1160 1161 1180 P G C 7 distorted distorted 1166 1181 1182 1183 1203 P C C 8 distorted distorted 1188 1204 1205 1206 1223 P C C 9 OK OK 1211 1224 1225 1226 1243 P G C 10 distorted distorted 1231 1244 1245 1246 1266 P A C 11 OK OK 1251 1267 1268 1269 1288 P A C 12 distorted distorted 1274 1289 1290 1291 1310 P A C 13 distorted distorted 1296 1311 1312 1313 1332 P G C 14 distorted distorted 1318 1333 1334 1335 1355 P G C 15 distorted distorted 1340 1356 1357 1358 1378 P C C 16 distorted distorted 1363 1379 1380 1381 1398 P G C 17 OK OK 1386 1399 1400 1401 1421 P A C 18 distorted distorted 1406 1422 1423 1424 1443 P A C 19 distorted distorted 1429 1444 1445 1446 1465 P G C 20 distorted distorted 1451 1466 1467 1468 1488 P A C 21 distorted distorted 1473 1489 1490 1491 1510 P A C 22 distorted distorted 1496 1511 1512 1513 1532 P C C 23 distorted distorted 1518 1533 1534 1535 1552 P C C 24 distorted distorted 1540 1553 1554 1555 1590 P G D 2 distorted distorted 1578 1591 1592 1593 1613 P G D 3 distorted distorted 1598 1614 1615 1616 1636 P G D 4 distorted distorted 1621 1637 1638 1639 1659 P G D 5 distorted distorted 1644 1660 1661 1662 1682 P A D 6 distorted distorted 1667 1683 1684 1685 1704 P G D 7 distorted distorted 1690 1705 1706 1707 1727 P C D 8 distorted distorted 1712 1728 1729 1730 1747 P C D 9 OK OK 1735 1748 1749 1750 1767 P G D 10 distorted distorted 1755 1768 1769 1770 1790 P A D 11 OK OK 1775 1791 1792 1793 1812 P A D 12 distorted distorted 1798 1813 1814 1815 1834 P A D 13 distorted distorted 1820 1835 1836 1837 1856 P G D 14 distorted distorted 1842 1857 1858 1859 1879 P G D 15 distorted distorted 1864 1880 1881 1882 1902 P C D 16 distorted distorted 1887 1903 1904 1905 1922 P G D 17 OK OK 1910 1923 1924 1925 1945 P A D 18 distorted distorted 1930 1946 1947 1948 1967 P A D 19 distorted distorted 1953 1968 1969 1970 1989 P G D 20 distorted distorted 1975 1990 1991 1992 2012 P A D 21 distorted distorted 1997 2013 2014 2015 2034 P A D 22 distorted distorted 2020 2035 2036 2037 2056 P C D 23 distorted distorted 2042 2057 2058 2059 2076 P C D 24 distorted distorted 2064 2077 2078 2079 2114 P G E 2 distorted distorted 2102 2115 2116 2117 2137 P G E 3 distorted distorted 2122 2138 2139 2140 2160 P G E 4 distorted distorted 2145 2161 2162 2163 2183 P G E 5 distorted distorted 2168 2184 2185 2186 2206 P A E 6 distorted distorted 2191 2207 2208 2209 2228 P G E 7 distorted distorted 2214 2229 2230 2231 2251 P C E 8 distorted distorted 2236 2252 2253 2254 2271 P C E 9 OK OK 2259 2272 2273 2274 2291 P G E 10 distorted distorted 2279 2292 2293 2294 2314 P A E 11 OK OK 2299 2315 2316 2317 2336 P A E 12 distorted distorted 2322 2337 2338 2339 2358 P A E 13 distorted distorted 2344 2359 2360 2361 2380 P G E 14 distorted distorted 2366 2381 2382 2383 2403 P G E 15 distorted distorted 2388 2404 2405 2406 2426 P C E 16 distorted distorted 2411 2427 2428 2429 2446 P G E 17 OK OK 2434 2447 2448 2449 2469 P A E 18 distorted distorted 2454 2470 2471 2472 2491 P A E 19 distorted distorted 2477 2492 2493 2494 2513 P G E 20 distorted distorted 2499 2514 2515 2516 2536 P A E 21 distorted distorted 2521 2537 2538 2539 2558 P A E 22 distorted distorted 2544 2559 2560 2561 2580 P C E 23 distorted distorted 2566 2581 2582 2583 2600 P C E 24 distorted distorted 2588 2601 2602 2603 2638 P G F 2 distorted distorted 2626 2639 2640 2641 2661 P G F 3 OK OK 2646 2662 2663 2664 2684 P G F 4 distorted distorted 2669 2685 2686 2687 2707 P G F 5 distorted distorted 2692 2708 2709 2710 2730 P A F 6 distorted distorted 2715 2731 2732 2733 2752 P G F 7 distorted distorted 2738 2753 2754 2755 2775 P C F 8 distorted distorted 2760 2776 2777 2778 2795 P C F 9 OK OK 2783 2796 2797 2798 2815 P G F 10 distorted distorted 2803 2816 2817 2818 2838 P A F 11 OK OK 2823 2839 2840 2841 2860 P A F 12 distorted distorted 2846 2861 2862 2863 2882 P A F 13 distorted distorted 2868 2883 2884 2885 2904 P G F 14 distorted distorted 2890 2905 2906 2907 2927 P G F 15 distorted distorted 2912 2928 2929 2930 2950 P C F 16 distorted distorted 2935 2951 2952 2953 2970 P G F 17 OK OK 2958 2971 2972 2973 2993 P A F 18 distorted distorted 2978 2994 2995 2996 3015 P A F 19 distorted distorted 3001 3016 3017 3018 3037 P G F 20 distorted distorted 3023 3038 3039 3040 3060 P A F 21 distorted distorted 3045 3061 3062 3063 3082 P A F 22 distorted distorted 3068 3083 3084 3085 3104 P C F 23 distorted distorted 3090 3105 3106 3107 3124 P C F 24 distorted distorted 3112 3125 3126 3127 3162 P G G 2 distorted distorted 3150 3163 3164 3165 3185 P G G 3 distorted distorted 3170 3186 3187 3188 3208 P G G 4 distorted distorted 3193 3209 3210 3211 3231 P G G 5 distorted distorted 3216 3232 3233 3234 3254 P A G 6 distorted distorted 3239 3255 3256 3257 3276 P G G 7 distorted distorted 3262 3277 3278 3279 3299 P C G 8 distorted distorted 3284 3300 3301 3302 3319 P C G 9 OK OK 3307 3320 3321 3322 3339 P G G 10 distorted distorted 3327 3340 3341 3342 3362 P A G 11 OK OK 3347 3363 3364 3365 3384 P A G 12 distorted distorted 3370 3385 3386 3387 3406 P A G 13 distorted distorted 3392 3407 3408 3409 3428 P G G 14 distorted distorted 3414 3429 3430 3431 3451 P G G 15 distorted distorted 3436 3452 3453 3454 3474 P C G 16 distorted distorted 3459 3475 3476 3477 3494 P G G 17 OK OK 3482 3495 3496 3497 3517 P A G 18 distorted distorted 3502 3518 3519 3520 3539 P A G 19 distorted distorted 3525 3540 3541 3542 3561 P G G 20 distorted distorted 3547 3562 3563 3564 3584 P A G 21 distorted distorted 3569 3585 3586 3587 3606 P A G 22 distorted distorted 3592 3607 3608 3609 3628 P C G 23 distorted distorted 3614 3629 3630 3631 3648 P C G 24 distorted distorted 3636 3649 3650 3651 3686 P G H 2 distorted distorted 3674 3687 3688 3689 3709 P G H 3 distorted distorted 3694 3710 3711 3712 3732 P G H 4 distorted distorted 3717 3733 3734 3735 3755 P G H 5 distorted distorted 3740 3756 3757 3758 3778 P A H 6 distorted distorted 3763 3779 3780 3781 3800 P G H 7 distorted distorted 3786 3801 3802 3803 3823 P C H 8 distorted distorted 3808 3824 3825 3826 3843 P C H 9 OK OK 3831 3844 3845 3846 3863 P G H 10 distorted distorted 3851 3864 3865 3866 3886 P A H 11 OK OK 3871 3887 3888 3889 3908 P A H 12 distorted distorted 3894 3909 3910 3911 3930 P A H 13 distorted distorted 3916 3931 3932 3933 3952 P G H 14 distorted distorted 3938 3953 3954 3955 3975 P G H 15 distorted distorted 3960 3976 3977 3978 3998 P C H 16 distorted distorted 3983 3999 4000 4001 4018 P G H 17 OK OK 4006 4019 4020 4021 4041 P A H 18 distorted distorted 4026 4042 4043 4044 4063 P A H 19 distorted distorted 4049 4064 4065 4066 4085 P G H 20 distorted distorted 4071 4086 4087 4088 4108 P A H 21 distorted distorted 4093 4109 4110 4111 4130 P A H 22 distorted distorted 4116 4131 4132 4133 4152 P C H 23 distorted distorted 4138 4153 4154 4155 4172 P C H 24 distorted distorted 4160 4173 4174 4175 ---------------------------------------------------------------------------------