ID code: '5ED2' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 3029 C1' G B 1 beta 3024 3030 3027 3052 C1' C B 2 beta 3047 3053 3050 3072 C1' U B 3 beta 3067 3073 3070 3092 C1' C B 4 beta 3087 3093 3090 3112 C1' G B 5 beta 3107 3113 3110 3135 C1' C B 6 beta 3130 3136 3133 3155 C1' G B 7 beta 3150 3156 3153 3178 C1' A B 8 beta 3173 3179 3176 3200 C1' U B 9 beta 3195 3201 3198 3220 C1' G B 10 beta 3215 3221 3218 3243 C1' C B 11 beta 3238 3244 3241 3263 C1' U B 12 beta 3258 3264 3261 3279 C1' 8AZ B 13 beta 3278 3280 3290 3305 C1' G B 14 beta 3300 3306 3303 3328 C1' A B 15 beta 3323 3329 3326 3350 C1' G B 16 beta 3345 3351 3348 3373 C1' G B 17 beta 3368 3374 3371 3396 C1' G B 18 beta 3391 3397 3394 3419 C1' C B 19 beta 3414 3420 3417 3439 C1' U B 20 beta 3434 3440 3437 3459 C1' C B 21 beta 3454 3460 3457 3479 C1' U B 22 beta 3474 3480 3477 3499 C1' G B 23 beta 3494 3500 3497 3520 C1' C C 1 beta 3515 3521 3518 3540 C1' A C 2 beta 3535 3541 3538 3562 C1' G C 3 beta 3557 3563 3560 3585 C1' A C 4 beta 3580 3586 3583 3607 C1' G C 5 beta 3602 3608 3605 3630 C1' C C 6 beta 3625 3631 3628 3650 C1' C C 7 beta 3645 3651 3648 3670 C1' C C 8 beta 3665 3671 3668 3690 C1' C C 9 beta 3685 3691 3688 3710 C1' C C 10 beta 3705 3711 3708 3730 C1' C C 11 beta 3725 3731 3728 3750 C1' A C 12 beta 3745 3751 3748 3772 C1' G C 13 beta 3767 3773 3770 3795 C1' C C 14 beta 3790 3796 3793 3815 C1' A C 15 beta 3810 3816 3813 3837 C1' U C 16 beta 3832 3838 3835 3857 C1' C C 17 beta 3852 3858 3855 3877 C1' G C 18 beta 3872 3878 3875 3900 C1' C C 19 beta 3895 3901 3898 3920 C1' G C 20 beta 3915 3921 3918 3943 C1' A C 21 beta 3938 3944 3941 3965 C1' G C 22 beta 3960 3966 3963 3988 C1' C C 23 beta 3983 3989 3986 7027 C1' G E 1 beta 7022 7028 7025 7050 C1' C E 2 beta 7045 7051 7048 7070 C1' U E 3 beta 7065 7071 7068 7090 C1' C E 4 beta 7085 7091 7088 7110 C1' G E 5 beta 7105 7111 7108 7133 C1' C E 6 beta 7128 7134 7131 7153 C1' G E 7 beta 7148 7154 7151 7176 C1' A E 8 beta 7171 7177 7174 7198 C1' U E 9 beta 7193 7199 7196 7218 C1' G E 10 beta 7213 7219 7216 7241 C1' C E 11 beta 7236 7242 7239 7261 C1' U E 12 beta 7256 7262 7259 7277 C1' 8AZ E 13 beta 7276 7278 7288 7303 C1' G E 14 beta 7298 7304 7301 7326 C1' A E 15 beta 7321 7327 7324 7348 C1' G E 16 beta 7343 7349 7346 7371 C1' G E 17 beta 7366 7372 7369 7394 C1' G E 18 beta 7389 7395 7392 7417 C1' C E 19 beta 7412 7418 7415 7437 C1' U E 20 beta 7432 7438 7435 7457 C1' C E 21 beta 7452 7458 7455 7477 C1' U E 22 beta 7472 7478 7475 7497 C1' G E 23 beta 7492 7498 7495 7518 C1' C F 1 beta 7513 7519 7516 7538 C1' A F 2 beta 7533 7539 7536 7560 C1' G F 3 beta 7555 7561 7558 7583 C1' A F 4 beta 7578 7584 7581 7605 C1' G F 5 beta 7600 7606 7603 7628 C1' C F 6 beta 7623 7629 7626 7648 C1' C F 7 beta 7643 7649 7646 7668 C1' C F 8 beta 7663 7669 7666 7688 C1' C F 9 beta 7683 7689 7686 7708 C1' C F 10 beta 7703 7709 7706 7728 C1' C F 11 beta 7723 7729 7726 7748 C1' A F 12 beta 7743 7749 7746 7770 C1' G F 13 beta 7765 7771 7768 7793 C1' C F 14 beta 7788 7794 7791 7813 C1' A F 15 beta 7808 7814 7811 7835 C1' U F 16 beta 7830 7836 7833 7855 C1' C F 17 beta 7850 7856 7853 7875 C1' G F 18 beta 7870 7876 7873 7898 C1' C F 19 beta 7893 7899 7896 7918 C1' G F 20 beta 7913 7919 7916 7941 C1' A F 21 beta 7936 7942 7939 7963 C1' G F 22 beta 7958 7964 7961 7986 C1' C F 23 beta 7981 7987 7984 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 3027 C2' G B 1 OK 3029 3025 3028 3050 C2' C B 2 OK 3052 3048 3051 3070 C2' U B 3 OK 3072 3068 3071 3090 C2' C B 4 OK 3092 3088 3091 3110 C2' G B 5 OK 3112 3108 3111 3133 C2' C B 6 OK 3135 3131 3134 3153 C2' G B 7 OK 3155 3151 3154 3176 C2' A B 8 OK 3178 3174 3177 3198 C2' U B 9 OK 3200 3196 3199 3218 C2' G B 10 OK 3220 3216 3219 3241 C2' C B 11 OK 3243 3239 3242 3261 C2' U B 12 OK 3263 3259 3262 3290 C2' 8AZ B 13 OK 3279 3292 3291 3303 C2' G B 14 OK 3305 3301 3304 3326 C2' A B 15 OK 3328 3324 3327 3348 C2' G B 16 OK 3350 3346 3349 3371 C2' G B 17 OK 3373 3369 3372 3394 C2' G B 18 OK 3396 3392 3395 3417 C2' C B 19 OK 3419 3415 3418 3437 C2' U B 20 OK 3439 3435 3438 3457 C2' C B 21 OK 3459 3455 3458 3477 C2' U B 22 OK 3479 3475 3478 3497 C2' G B 23 OK 3499 3495 3498 3518 C2' C C 1 OK 3520 3516 3519 3538 C2' A C 2 OK 3540 3536 3539 3560 C2' G C 3 OK 3562 3558 3561 3583 C2' A C 4 OK 3585 3581 3584 3605 C2' G C 5 OK 3607 3603 3606 3628 C2' C C 6 OK 3630 3626 3629 3648 C2' C C 7 OK 3650 3646 3649 3668 C2' C C 8 OK 3670 3666 3669 3688 C2' C C 9 OK 3690 3686 3689 3708 C2' C C 10 OK 3710 3706 3709 3728 C2' C C 11 OK 3730 3726 3729 3748 C2' A C 12 OK 3750 3746 3749 3770 C2' G C 13 OK 3772 3768 3771 3793 C2' C C 14 OK 3795 3791 3794 3813 C2' A C 15 OK 3815 3811 3814 3835 C2' U C 16 OK 3837 3833 3836 3855 C2' C C 17 OK 3857 3853 3856 3875 C2' G C 18 OK 3877 3873 3876 3898 C2' C C 19 OK 3900 3896 3899 3918 C2' G C 20 OK 3920 3916 3919 3941 C2' A C 21 OK 3943 3939 3942 3963 C2' G C 22 OK 3965 3961 3964 3986 C2' C C 23 OK 3988 3984 3987 7025 C2' G E 1 OK 7027 7023 7026 7048 C2' C E 2 OK 7050 7046 7049 7068 C2' U E 3 OK 7070 7066 7069 7088 C2' C E 4 OK 7090 7086 7089 7108 C2' G E 5 OK 7110 7106 7109 7131 C2' C E 6 OK 7133 7129 7132 7151 C2' G E 7 OK 7153 7149 7152 7174 C2' A E 8 OK 7176 7172 7175 7196 C2' U E 9 OK 7198 7194 7197 7216 C2' G E 10 OK 7218 7214 7217 7239 C2' C E 11 OK 7241 7237 7240 7259 C2' U E 12 OK 7261 7257 7260 7288 C2' 8AZ E 13 OK 7277 7290 7289 7301 C2' G E 14 OK 7303 7299 7302 7324 C2' A E 15 OK 7326 7322 7325 7346 C2' G E 16 OK 7348 7344 7347 7369 C2' G E 17 OK 7371 7367 7370 7392 C2' G E 18 OK 7394 7390 7393 7415 C2' C E 19 OK 7417 7413 7416 7435 C2' U E 20 OK 7437 7433 7436 7455 C2' C E 21 OK 7457 7453 7456 7475 C2' U E 22 OK 7477 7473 7476 7495 C2' G E 23 OK 7497 7493 7496 7516 C2' C F 1 OK 7518 7514 7517 7536 C2' A F 2 OK 7538 7534 7537 7558 C2' G F 3 OK 7560 7556 7559 7581 C2' A F 4 OK 7583 7579 7582 7603 C2' G F 5 OK 7605 7601 7604 7626 C2' C F 6 OK 7628 7624 7627 7646 C2' C F 7 OK 7648 7644 7647 7666 C2' C F 8 OK 7668 7664 7667 7686 C2' C F 9 OK 7688 7684 7687 7706 C2' C F 10 OK 7708 7704 7707 7726 C2' C F 11 OK 7728 7724 7727 7746 C2' A F 12 OK 7748 7744 7747 7768 C2' G F 13 OK 7770 7766 7769 7791 C2' C F 14 OK 7793 7789 7792 7811 C2' A F 15 OK 7813 7809 7812 7833 C2' U F 16 OK 7835 7831 7834 7853 C2' C F 17 OK 7855 7851 7854 7873 C2' G F 18 OK 7875 7871 7874 7896 C2' C F 19 OK 7898 7894 7897 7916 C2' G F 20 OK 7918 7914 7917 7939 C2' A F 21 OK 7941 7937 7940 7961 C2' G F 22 OK 7963 7959 7962 7984 C2' C F 23 OK 7986 7982 7985 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 3025 C3' G B 1 OK 3023 3026 3027 3048 C3' C B 2 OK 3046 3049 3050 3068 C3' U B 3 OK 3066 3069 3070 3088 C3' C B 4 OK 3086 3089 3090 3108 C3' G B 5 OK 3106 3109 3110 3131 C3' C B 6 OK 3129 3132 3133 3151 C3' G B 7 OK 3149 3152 3153 3174 C3' A B 8 OK 3172 3175 3176 3196 C3' U B 9 OK 3194 3197 3198 3216 C3' G B 10 OK 3214 3217 3218 3239 C3' C B 11 OK 3237 3240 3241 3259 C3' U B 12 OK 3257 3260 3261 3292 C3' 8AZ B 13 OK 3277 3293 3290 3301 C3' G B 14 OK 3299 3302 3303 3324 C3' A B 15 OK 3322 3325 3326 3346 C3' G B 16 OK 3344 3347 3348 3369 C3' G B 17 OK 3367 3370 3371 3392 C3' G B 18 OK 3390 3393 3394 3415 C3' C B 19 OK 3413 3416 3417 3435 C3' U B 20 OK 3433 3436 3437 3455 C3' C B 21 OK 3453 3456 3457 3475 C3' U B 22 OK 3473 3476 3477 3495 C3' G B 23 OK 3493 3496 3497 3516 C3' C C 1 OK 3514 3517 3518 3536 C3' A C 2 OK 3534 3537 3538 3558 C3' G C 3 OK 3556 3559 3560 3581 C3' A C 4 OK 3579 3582 3583 3603 C3' G C 5 OK 3601 3604 3605 3626 C3' C C 6 OK 3624 3627 3628 3646 C3' C C 7 OK 3644 3647 3648 3666 C3' C C 8 OK 3664 3667 3668 3686 C3' C C 9 OK 3684 3687 3688 3706 C3' C C 10 OK 3704 3707 3708 3726 C3' C C 11 OK 3724 3727 3728 3746 C3' A C 12 OK 3744 3747 3748 3768 C3' G C 13 OK 3766 3769 3770 3791 C3' C C 14 OK 3789 3792 3793 3811 C3' A C 15 OK 3809 3812 3813 3833 C3' U C 16 OK 3831 3834 3835 3853 C3' C C 17 OK 3851 3854 3855 3873 C3' G C 18 OK 3871 3874 3875 3896 C3' C C 19 OK 3894 3897 3898 3916 C3' G C 20 OK 3914 3917 3918 3939 C3' A C 21 OK 3937 3940 3941 3961 C3' G C 22 OK 3959 3962 3963 3984 C3' C C 23 OK 3982 3985 3986 7023 C3' G E 1 OK 7021 7024 7025 7046 C3' C E 2 OK 7044 7047 7048 7066 C3' U E 3 OK 7064 7067 7068 7086 C3' C E 4 OK 7084 7087 7088 7106 C3' G E 5 OK 7104 7107 7108 7129 C3' C E 6 OK 7127 7130 7131 7149 C3' G E 7 OK 7147 7150 7151 7172 C3' A E 8 OK 7170 7173 7174 7194 C3' U E 9 OK 7192 7195 7196 7214 C3' G E 10 OK 7212 7215 7216 7237 C3' C E 11 OK 7235 7238 7239 7257 C3' U E 12 OK 7255 7258 7259 7290 C3' 8AZ E 13 OK 7275 7291 7288 7299 C3' G E 14 OK 7297 7300 7301 7322 C3' A E 15 OK 7320 7323 7324 7344 C3' G E 16 OK 7342 7345 7346 7367 C3' G E 17 OK 7365 7368 7369 7390 C3' G E 18 OK 7388 7391 7392 7413 C3' C E 19 OK 7411 7414 7415 7433 C3' U E 20 OK 7431 7434 7435 7453 C3' C E 21 OK 7451 7454 7455 7473 C3' U E 22 OK 7471 7474 7475 7493 C3' G E 23 OK 7491 7494 7495 7514 C3' C F 1 OK 7512 7515 7516 7534 C3' A F 2 OK 7532 7535 7536 7556 C3' G F 3 OK 7554 7557 7558 7579 C3' A F 4 OK 7577 7580 7581 7601 C3' G F 5 OK 7599 7602 7603 7624 C3' C F 6 OK 7622 7625 7626 7644 C3' C F 7 OK 7642 7645 7646 7664 C3' C F 8 OK 7662 7665 7666 7684 C3' C F 9 OK 7682 7685 7686 7704 C3' C F 10 OK 7702 7705 7706 7724 C3' C F 11 OK 7722 7725 7726 7744 C3' A F 12 OK 7742 7745 7746 7766 C3' G F 13 OK 7764 7767 7768 7789 C3' C F 14 OK 7787 7790 7791 7809 C3' A F 15 OK 7807 7810 7811 7831 C3' U F 16 OK 7829 7832 7833 7851 C3' C F 17 OK 7849 7852 7853 7871 C3' G F 18 OK 7869 7872 7873 7894 C3' C F 19 OK 7892 7895 7896 7914 C3' G F 20 OK 7912 7915 7916 7937 C3' A F 21 OK 7935 7938 7939 7959 C3' G F 22 OK 7957 7960 7961 7982 C3' C F 23 OK 7980 7983 7984 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 3023 C4' G B 1 OK 3025 3022 3024 3046 C4' C B 2 OK 3048 3045 3047 3066 C4' U B 3 OK 3068 3065 3067 3086 C4' C B 4 OK 3088 3085 3087 3106 C4' G B 5 OK 3108 3105 3107 3129 C4' C B 6 OK 3131 3128 3130 3149 C4' G B 7 OK 3151 3148 3150 3172 C4' A B 8 OK 3174 3171 3173 3194 C4' U B 9 OK 3196 3193 3195 3214 C4' G B 10 OK 3216 3213 3215 3237 C4' C B 11 OK 3239 3236 3238 3257 C4' U B 12 OK 3259 3256 3258 3277 C4' 8AZ B 13 OK 3292 3276 3278 3299 C4' G B 14 OK 3301 3298 3300 3322 C4' A B 15 OK 3324 3321 3323 3344 C4' G B 16 OK 3346 3343 3345 3367 C4' G B 17 OK 3369 3366 3368 3390 C4' G B 18 OK 3392 3389 3391 3413 C4' C B 19 OK 3415 3412 3414 3433 C4' U B 20 OK 3435 3432 3434 3453 C4' C B 21 OK 3455 3452 3454 3473 C4' U B 22 OK 3475 3472 3474 3493 C4' G B 23 OK 3495 3492 3494 3514 C4' C C 1 OK 3516 3513 3515 3534 C4' A C 2 OK 3536 3533 3535 3556 C4' G C 3 OK 3558 3555 3557 3579 C4' A C 4 OK 3581 3578 3580 3601 C4' G C 5 OK 3603 3600 3602 3624 C4' C C 6 OK 3626 3623 3625 3644 C4' C C 7 OK 3646 3643 3645 3664 C4' C C 8 OK 3666 3663 3665 3684 C4' C C 9 OK 3686 3683 3685 3704 C4' C C 10 OK 3706 3703 3705 3724 C4' C C 11 OK 3726 3723 3725 3744 C4' A C 12 OK 3746 3743 3745 3766 C4' G C 13 OK 3768 3765 3767 3789 C4' C C 14 OK 3791 3788 3790 3809 C4' A C 15 OK 3811 3808 3810 3831 C4' U C 16 OK 3833 3830 3832 3851 C4' C C 17 OK 3853 3850 3852 3871 C4' G C 18 OK 3873 3870 3872 3894 C4' C C 19 OK 3896 3893 3895 3914 C4' G C 20 OK 3916 3913 3915 3937 C4' A C 21 OK 3939 3936 3938 3959 C4' G C 22 OK 3961 3958 3960 3982 C4' C C 23 OK 3984 3981 3983 7021 C4' G E 1 OK 7023 7020 7022 7044 C4' C E 2 OK 7046 7043 7045 7064 C4' U E 3 OK 7066 7063 7065 7084 C4' C E 4 OK 7086 7083 7085 7104 C4' G E 5 OK 7106 7103 7105 7127 C4' C E 6 OK 7129 7126 7128 7147 C4' G E 7 OK 7149 7146 7148 7170 C4' A E 8 OK 7172 7169 7171 7192 C4' U E 9 OK 7194 7191 7193 7212 C4' G E 10 OK 7214 7211 7213 7235 C4' C E 11 OK 7237 7234 7236 7255 C4' U E 12 OK 7257 7254 7256 7275 C4' 8AZ E 13 OK 7290 7274 7276 7297 C4' G E 14 OK 7299 7296 7298 7320 C4' A E 15 OK 7322 7319 7321 7342 C4' G E 16 OK 7344 7341 7343 7365 C4' G E 17 OK 7367 7364 7366 7388 C4' G E 18 OK 7390 7387 7389 7411 C4' C E 19 OK 7413 7410 7412 7431 C4' U E 20 OK 7433 7430 7432 7451 C4' C E 21 OK 7453 7450 7452 7471 C4' U E 22 OK 7473 7470 7472 7491 C4' G E 23 OK 7493 7490 7492 7512 C4' C F 1 OK 7514 7511 7513 7532 C4' A F 2 OK 7534 7531 7533 7554 C4' G F 3 OK 7556 7553 7555 7577 C4' A F 4 OK 7579 7576 7578 7599 C4' G F 5 OK 7601 7598 7600 7622 C4' C F 6 OK 7624 7621 7623 7642 C4' C F 7 OK 7644 7641 7643 7662 C4' C F 8 OK 7664 7661 7663 7682 C4' C F 9 OK 7684 7681 7683 7702 C4' C F 10 OK 7704 7701 7703 7722 C4' C F 11 OK 7724 7721 7723 7742 C4' A F 12 OK 7744 7741 7743 7764 C4' G F 13 OK 7766 7763 7765 7787 C4' C F 14 OK 7789 7786 7788 7807 C4' A F 15 OK 7809 7806 7808 7829 C4' U F 16 OK 7831 7828 7830 7849 C4' C F 17 OK 7851 7848 7850 7869 C4' G F 18 OK 7871 7868 7870 7892 C4' C F 19 OK 7894 7891 7893 7912 C4' G F 20 OK 7914 7911 7913 7935 C4' A F 21 OK 7937 7934 7936 7957 C4' G F 22 OK 7959 7956 7958 7980 C4' C F 23 OK 7982 7979 7981 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 3022 C5' G B 1 3021 3023 3045 C5' C B 2 3044 3046 3065 C5' U B 3 3064 3066 3085 C5' C B 4 3084 3086 3105 C5' G B 5 3104 3106 3128 C5' C B 6 3127 3129 3148 C5' G B 7 3147 3149 3171 C5' A B 8 3170 3172 3193 C5' U B 9 3192 3194 3213 C5' G B 10 3212 3214 3236 C5' C B 11 3235 3237 3256 C5' U B 12 3255 3257 3276 C5' 8AZ B 13 3275 3277 3298 C5' G B 14 3297 3299 3321 C5' A B 15 3320 3322 3343 C5' G B 16 3342 3344 3366 C5' G B 17 3365 3367 3389 C5' G B 18 3388 3390 3412 C5' C B 19 3411 3413 3432 C5' U B 20 3431 3433 3452 C5' C B 21 3451 3453 3472 C5' U B 22 3471 3473 3492 C5' G B 23 3491 3493 3513 C5' C C 1 3512 3514 3533 C5' A C 2 3532 3534 3555 C5' G C 3 3554 3556 3578 C5' A C 4 3577 3579 3600 C5' G C 5 3599 3601 3623 C5' C C 6 3622 3624 3643 C5' C C 7 3642 3644 3663 C5' C C 8 3662 3664 3683 C5' C C 9 3682 3684 3703 C5' C C 10 3702 3704 3723 C5' C C 11 3722 3724 3743 C5' A C 12 3742 3744 3765 C5' G C 13 3764 3766 3788 C5' C C 14 3787 3789 3808 C5' A C 15 3807 3809 3830 C5' U C 16 3829 3831 3850 C5' C C 17 3849 3851 3870 C5' G C 18 3869 3871 3893 C5' C C 19 3892 3894 3913 C5' G C 20 3912 3914 3936 C5' A C 21 3935 3937 3958 C5' G C 22 3957 3959 3981 C5' C C 23 3980 3982 7020 C5' G E 1 7019 7021 7043 C5' C E 2 7042 7044 7063 C5' U E 3 7062 7064 7083 C5' C E 4 7082 7084 7103 C5' G E 5 7102 7104 7126 C5' C E 6 7125 7127 7146 C5' G E 7 7145 7147 7169 C5' A E 8 7168 7170 7191 C5' U E 9 7190 7192 7211 C5' G E 10 7210 7212 7234 C5' C E 11 7233 7235 7254 C5' U E 12 7253 7255 7274 C5' 8AZ E 13 7273 7275 7296 C5' G E 14 7295 7297 7319 C5' A E 15 7318 7320 7341 C5' G E 16 7340 7342 7364 C5' G E 17 7363 7365 7387 C5' G E 18 7386 7388 7410 C5' C E 19 7409 7411 7430 C5' U E 20 7429 7431 7450 C5' C E 21 7449 7451 7470 C5' U E 22 7469 7471 7490 C5' G E 23 7489 7491 7511 C5' C F 1 7510 7512 7531 C5' A F 2 7530 7532 7553 C5' G F 3 7552 7554 7576 C5' A F 4 7575 7577 7598 C5' G F 5 7597 7599 7621 C5' C F 6 7620 7622 7641 C5' C F 7 7640 7642 7661 C5' C F 8 7660 7662 7681 C5' C F 9 7680 7682 7701 C5' C F 10 7700 7702 7721 C5' C F 11 7720 7722 7741 C5' A F 12 7740 7742 7763 C5' G F 13 7762 7764 7786 C5' C F 14 7785 7787 7806 C5' A F 15 7805 7807 7828 C5' U F 16 7827 7829 7848 C5' C F 17 7847 7849 7868 C5' G F 18 7867 7869 7891 C5' C F 19 7890 7892 7911 C5' G F 20 7910 7912 7934 C5' A F 21 7933 7935 7956 C5' G F 22 7955 7957 7979 C5' C F 23 7978 7980 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 3041 P C B 2 distorted distorted 3026 3042 3043 3044 3061 P U B 3 distorted distorted 3049 3062 3063 3064 3081 P C B 4 distorted distorted 3069 3082 3083 3084 3101 P G B 5 distorted distorted 3089 3102 3103 3104 3124 P C B 6 distorted distorted 3109 3125 3126 3127 3144 P G B 7 distorted distorted 3132 3145 3146 3147 3167 P A B 8 distorted distorted 3152 3168 3169 3170 3189 P U B 9 distorted distorted 3175 3190 3191 3192 3209 P G B 10 distorted distorted 3197 3210 3211 3212 3232 P C B 11 distorted distorted 3217 3233 3234 3235 3252 P U B 12 distorted distorted 3240 3253 3254 3255 3272 P 8AZ B 13 distorted distorted 3260 3274 3273 3275 3294 P G B 14 distorted distorted 3293 3295 3296 3297 3317 P A B 15 distorted distorted 3302 3318 3319 3320 3339 P G B 16 distorted distorted 3325 3340 3341 3342 3362 P G B 17 distorted distorted 3347 3363 3364 3365 3385 P G B 18 distorted distorted 3370 3386 3387 3388 3408 P C B 19 distorted distorted 3393 3409 3410 3411 3428 P U B 20 distorted distorted 3416 3429 3430 3431 3448 P C B 21 distorted distorted 3436 3449 3450 3451 3468 P U B 22 distorted distorted 3456 3469 3470 3471 3488 P G B 23 distorted distorted 3476 3489 3490 3491 3529 P A C 2 distorted distorted 3517 3530 3531 3532 3551 P G C 3 distorted distorted 3537 3552 3553 3554 3574 P A C 4 distorted distorted 3559 3575 3576 3577 3596 P G C 5 distorted distorted 3582 3597 3598 3599 3619 P C C 6 distorted distorted 3604 3620 3621 3622 3639 P C C 7 distorted distorted 3627 3640 3641 3642 3659 P C C 8 distorted distorted 3647 3660 3661 3662 3679 P C C 9 distorted distorted 3667 3680 3681 3682 3699 P C C 10 distorted distorted 3687 3700 3701 3702 3719 P C C 11 distorted distorted 3707 3720 3721 3722 3739 P A C 12 distorted distorted 3727 3740 3741 3742 3761 P G C 13 distorted distorted 3747 3762 3763 3764 3784 P C C 14 distorted distorted 3769 3785 3786 3787 3804 P A C 15 distorted distorted 3792 3805 3806 3807 3826 P U C 16 distorted distorted 3812 3827 3828 3829 3846 P C C 17 distorted distorted 3834 3847 3848 3849 3866 P G C 18 distorted distorted 3854 3867 3868 3869 3889 P C C 19 distorted distorted 3874 3890 3891 3892 3909 P G C 20 distorted distorted 3897 3910 3911 3912 3932 P A C 21 distorted distorted 3917 3933 3934 3935 3954 P G C 22 distorted distorted 3940 3955 3956 3957 3977 P C C 23 distorted distorted 3962 3978 3979 3980 7039 P C E 2 distorted distorted 7024 7040 7041 7042 7059 P U E 3 distorted distorted 7047 7060 7061 7062 7079 P C E 4 distorted distorted 7067 7080 7081 7082 7099 P G E 5 distorted distorted 7087 7100 7101 7102 7122 P C E 6 distorted distorted 7107 7123 7124 7125 7142 P G E 7 distorted distorted 7130 7143 7144 7145 7165 P A E 8 distorted distorted 7150 7166 7167 7168 7187 P U E 9 distorted distorted 7173 7188 7189 7190 7207 P G E 10 distorted distorted 7195 7208 7209 7210 7230 P C E 11 distorted distorted 7215 7231 7232 7233 7250 P U E 12 distorted distorted 7238 7251 7252 7253 7270 P 8AZ E 13 distorted distorted 7258 7272 7271 7273 7292 P G E 14 distorted distorted 7291 7293 7294 7295 7315 P A E 15 distorted distorted 7300 7316 7317 7318 7337 P G E 16 distorted distorted 7323 7338 7339 7340 7360 P G E 17 distorted distorted 7345 7361 7362 7363 7383 P G E 18 distorted distorted 7368 7384 7385 7386 7406 P C E 19 distorted distorted 7391 7407 7408 7409 7426 P U E 20 distorted distorted 7414 7427 7428 7429 7446 P C E 21 distorted distorted 7434 7447 7448 7449 7466 P U E 22 distorted distorted 7454 7467 7468 7469 7486 P G E 23 distorted distorted 7474 7487 7488 7489 7527 P A F 2 distorted distorted 7515 7528 7529 7530 7549 P G F 3 distorted distorted 7535 7550 7551 7552 7572 P A F 4 distorted distorted 7557 7573 7574 7575 7594 P G F 5 distorted distorted 7580 7595 7596 7597 7617 P C F 6 distorted distorted 7602 7618 7619 7620 7637 P C F 7 distorted distorted 7625 7638 7639 7640 7657 P C F 8 distorted distorted 7645 7658 7659 7660 7677 P C F 9 distorted distorted 7665 7678 7679 7680 7697 P C F 10 distorted distorted 7685 7698 7699 7700 7717 P C F 11 distorted distorted 7705 7718 7719 7720 7737 P A F 12 distorted distorted 7725 7738 7739 7740 7759 P G F 13 distorted distorted 7745 7760 7761 7762 7782 P C F 14 distorted distorted 7767 7783 7784 7785 7802 P A F 15 distorted distorted 7790 7803 7804 7805 7824 P U F 16 distorted distorted 7810 7825 7826 7827 7844 P C F 17 distorted distorted 7832 7845 7846 7847 7864 P G F 18 distorted distorted 7852 7865 7866 7867 7887 P C F 19 distorted distorted 7872 7888 7889 7890 7907 P G F 20 distorted distorted 7895 7908 7909 7910 7930 P A F 21 distorted distorted 7915 7931 7932 7933 7952 P G F 22 distorted distorted 7938 7953 7954 7955 7975 P C F 23 distorted distorted 7960 7976 7977 7978 ---------------------------------------------------------------------------------