ID code: '5E54' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 13 C1' G A 13 beta 8 14 11 36 C1' G A 14 beta 31 37 34 59 C1' G A 15 beta 54 60 57 82 C1' A A 16 beta 77 83 80 104 C1' A A 17 beta 99 105 102 126 C1' G A 18 beta 121 127 124 149 C1' A A 19 beta 144 150 147 171 C1' U A 20 beta 166 172 169 191 C1' A A 21 beta 186 192 189 213 C1' U A 22 beta 208 214 211 233 C1' A A 23 beta 228 234 231 255 C1' A A 24 beta 250 256 253 277 C1' U A 25 beta 272 278 275 297 C1' C A 26 beta 292 298 295 317 C1' C A 27 beta 312 318 315 337 C1' U A 28 beta 332 338 335 357 C1' A A 29 beta 352 358 355 379 C1' A A 30 beta 374 380 377 401 C1' U A 31 beta 396 402 399 421 C1' G A 32 beta 416 422 419 444 C1' A A 33 beta 439 445 442 466 C1' U A 34 beta 461 467 464 486 C1' A A 35 beta 481 487 484 508 C1' U A 36 beta 503 509 506 528 C1' G A 37 beta 523 529 526 551 C1' G A 38 beta 546 552 549 574 C1' U A 39 beta 569 575 572 594 C1' U A 40 beta 589 595 592 614 C1' U A 41 beta 609 615 612 634 C1' G A 42 beta 629 635 632 657 C1' G A 43 beta 652 658 655 680 C1' G A 44 beta 675 681 678 703 C1' A A 45 beta 698 704 701 725 C1' G A 46 beta 720 726 723 748 C1' U A 47 beta 743 749 746 768 C1' U A 48 beta 763 769 766 788 C1' U A 49 beta 783 789 786 808 C1' C A 50 beta 803 809 806 828 C1' U A 51 beta 823 829 826 848 C1' A A 52 beta 843 849 846 870 C1' C A 53 beta 865 871 868 890 C1' C A 54 beta 885 891 888 910 C1' A A 55 beta 905 911 908 932 C1' A A 56 beta 927 933 930 954 C1' G A 57 beta 949 955 952 977 C1' A A 58 beta 972 978 975 999 C1' G A 59 beta 994 1000 997 1022 C1' C A 60 beta 1017 1023 1020 1042 C1' C A 61 beta 1037 1043 1040 1062 C1' U A 62 beta 1057 1063 1060 1082 C1' U A 63 beta 1077 1083 1080 1102 C1' A A 64 beta 1097 1103 1100 1124 C1' A A 65 beta 1119 1125 1122 1146 C1' A A 66 beta 1141 1147 1144 1168 C1' C A 67 beta 1163 1169 1166 1188 C1' U A 68 beta 1183 1189 1186 1208 C1' C A 69 beta 1203 1209 1206 1228 C1' U A 70 beta 1223 1229 1226 1248 C1' U A 71 beta 1243 1249 1246 1268 C1' G A 72 beta 1263 1269 1266 1291 C1' A A 73 beta 1286 1292 1289 1313 C1' U A 74 beta 1308 1314 1311 1333 C1' U A 75 beta 1328 1334 1331 1353 C1' A A 76 beta 1348 1354 1351 1375 C1' U A 77 beta 1370 1376 1373 1397 C1' G B 13 beta 1392 1398 1395 1420 C1' G B 14 beta 1415 1421 1418 1443 C1' G B 15 beta 1438 1444 1441 1466 C1' A B 16 beta 1461 1467 1464 1488 C1' A B 17 beta 1483 1489 1486 1510 C1' G B 18 beta 1505 1511 1508 1533 C1' A B 19 beta 1528 1534 1531 1555 C1' U B 20 beta 1550 1556 1553 1575 C1' A B 21 beta 1570 1576 1573 1597 C1' U B 22 beta 1592 1598 1595 1617 C1' A B 23 beta 1612 1618 1615 1639 C1' A B 24 beta 1634 1640 1637 1661 C1' U B 25 beta 1656 1662 1659 1681 C1' C B 26 beta 1676 1682 1679 1701 C1' C B 27 beta 1696 1702 1699 1721 C1' U B 28 beta 1716 1722 1719 1741 C1' A B 29 beta 1736 1742 1739 1763 C1' A B 30 beta 1758 1764 1761 1785 C1' U B 31 beta 1780 1786 1783 1805 C1' G B 32 beta 1800 1806 1803 1828 C1' A B 33 beta 1823 1829 1826 1850 C1' U B 34 beta 1845 1851 1848 1870 C1' A B 35 beta 1865 1871 1868 1892 C1' U B 36 beta 1887 1893 1890 1912 C1' G B 37 beta 1907 1913 1910 1935 C1' G B 38 beta 1930 1936 1933 1958 C1' U B 39 beta 1953 1959 1956 1978 C1' U B 40 beta 1973 1979 1976 1998 C1' U B 41 beta 1993 1999 1996 2018 C1' G B 42 beta 2013 2019 2016 2041 C1' G B 43 beta 2036 2042 2039 2064 C1' G B 44 beta 2059 2065 2062 2087 C1' A B 45 beta 2082 2088 2085 2109 C1' G B 46 beta 2104 2110 2107 2132 C1' U B 47 beta 2127 2133 2130 2152 C1' U B 48 beta 2147 2153 2150 2172 C1' U B 49 beta 2167 2173 2170 2192 C1' C B 50 beta 2187 2193 2190 2212 C1' U B 51 beta 2207 2213 2210 2232 C1' A B 52 beta 2227 2233 2230 2254 C1' C B 53 beta 2249 2255 2252 2274 C1' C B 54 beta 2269 2275 2272 2294 C1' A B 55 beta 2289 2295 2292 2316 C1' A B 56 beta 2311 2317 2314 2338 C1' G B 57 beta 2333 2339 2336 2361 C1' A B 58 beta 2356 2362 2359 2383 C1' G B 59 beta 2378 2384 2381 2406 C1' C B 60 beta 2401 2407 2404 2426 C1' C B 61 beta 2421 2427 2424 2446 C1' U B 62 beta 2441 2447 2444 2466 C1' U B 63 beta 2461 2467 2464 2486 C1' A B 64 beta 2481 2487 2484 2508 C1' A B 65 beta 2503 2509 2506 2530 C1' A B 66 beta 2525 2531 2528 2552 C1' C B 67 beta 2547 2553 2550 2572 C1' U B 68 beta 2567 2573 2570 2592 C1' C B 69 beta 2587 2593 2590 2612 C1' U B 70 beta 2607 2613 2610 2632 C1' U B 71 beta 2627 2633 2630 2652 C1' G B 72 beta 2647 2653 2650 2675 C1' A B 73 beta 2670 2676 2673 2697 C1' U B 74 beta 2692 2698 2695 2717 C1' U B 75 beta 2712 2718 2715 2737 C1' A B 76 beta 2732 2738 2735 2759 C1' U B 77 beta 2754 2760 2757 2779 C1' C B 78 beta 2774 2780 2777 2799 C1' U B 79 beta 2794 2800 2797 2819 C1' U B 80 beta 2814 2820 2817 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 11 C2' G A 13 OK 13 9 12 34 C2' G A 14 OK 36 32 35 57 C2' G A 15 OK 59 55 58 80 C2' A A 16 OK 82 78 81 102 C2' A A 17 OK 104 100 103 124 C2' G A 18 OK 126 122 125 147 C2' A A 19 OK 149 145 148 169 C2' U A 20 OK 171 167 170 189 C2' A A 21 OK 191 187 190 211 C2' U A 22 OK 213 209 212 231 C2' A A 23 OK 233 229 232 253 C2' A A 24 OK 255 251 254 275 C2' U A 25 OK 277 273 276 295 C2' C A 26 OK 297 293 296 315 C2' C A 27 OK 317 313 316 335 C2' U A 28 OK 337 333 336 355 C2' A A 29 OK 357 353 356 377 C2' A A 30 OK 379 375 378 399 C2' U A 31 OK 401 397 400 419 C2' G A 32 OK 421 417 420 442 C2' A A 33 OK 444 440 443 464 C2' U A 34 OK 466 462 465 484 C2' A A 35 OK 486 482 485 506 C2' U A 36 OK 508 504 507 526 C2' G A 37 OK 528 524 527 549 C2' G A 38 OK 551 547 550 572 C2' U A 39 OK 574 570 573 592 C2' U A 40 OK 594 590 593 612 C2' U A 41 OK 614 610 613 632 C2' G A 42 OK 634 630 633 655 C2' G A 43 OK 657 653 656 678 C2' G A 44 OK 680 676 679 701 C2' A A 45 OK 703 699 702 723 C2' G A 46 OK 725 721 724 746 C2' U A 47 OK 748 744 747 766 C2' U A 48 OK 768 764 767 786 C2' U A 49 OK 788 784 787 806 C2' C A 50 OK 808 804 807 826 C2' U A 51 OK 828 824 827 846 C2' A A 52 OK 848 844 847 868 C2' C A 53 OK 870 866 869 888 C2' C A 54 OK 890 886 889 908 C2' A A 55 OK 910 906 909 930 C2' A A 56 OK 932 928 931 952 C2' G A 57 OK 954 950 953 975 C2' A A 58 OK 977 973 976 997 C2' G A 59 OK 999 995 998 1020 C2' C A 60 OK 1022 1018 1021 1040 C2' C A 61 OK 1042 1038 1041 1060 C2' U A 62 OK 1062 1058 1061 1080 C2' U A 63 OK 1082 1078 1081 1100 C2' A A 64 OK 1102 1098 1101 1122 C2' A A 65 OK 1124 1120 1123 1144 C2' A A 66 OK 1146 1142 1145 1166 C2' C A 67 OK 1168 1164 1167 1186 C2' U A 68 OK 1188 1184 1187 1206 C2' C A 69 OK 1208 1204 1207 1226 C2' U A 70 OK 1228 1224 1227 1246 C2' U A 71 OK 1248 1244 1247 1266 C2' G A 72 OK 1268 1264 1267 1289 C2' A A 73 OK 1291 1287 1290 1311 C2' U A 74 OK 1313 1309 1312 1331 C2' U A 75 OK 1333 1329 1332 1351 C2' A A 76 OK 1353 1349 1352 1373 C2' U A 77 OK 1375 1371 1374 1395 C2' G B 13 OK 1397 1393 1396 1418 C2' G B 14 OK 1420 1416 1419 1441 C2' G B 15 OK 1443 1439 1442 1464 C2' A B 16 OK 1466 1462 1465 1486 C2' A B 17 OK 1488 1484 1487 1508 C2' G B 18 OK 1510 1506 1509 1531 C2' A B 19 OK 1533 1529 1532 1553 C2' U B 20 OK 1555 1551 1554 1573 C2' A B 21 OK 1575 1571 1574 1595 C2' U B 22 OK 1597 1593 1596 1615 C2' A B 23 OK 1617 1613 1616 1637 C2' A B 24 OK 1639 1635 1638 1659 C2' U B 25 OK 1661 1657 1660 1679 C2' C B 26 OK 1681 1677 1680 1699 C2' C B 27 OK 1701 1697 1700 1719 C2' U B 28 OK 1721 1717 1720 1739 C2' A B 29 OK 1741 1737 1740 1761 C2' A B 30 OK 1763 1759 1762 1783 C2' U B 31 OK 1785 1781 1784 1803 C2' G B 32 OK 1805 1801 1804 1826 C2' A B 33 OK 1828 1824 1827 1848 C2' U B 34 OK 1850 1846 1849 1868 C2' A B 35 OK 1870 1866 1869 1890 C2' U B 36 OK 1892 1888 1891 1910 C2' G B 37 OK 1912 1908 1911 1933 C2' G B 38 OK 1935 1931 1934 1956 C2' U B 39 OK 1958 1954 1957 1976 C2' U B 40 OK 1978 1974 1977 1996 C2' U B 41 OK 1998 1994 1997 2016 C2' G B 42 OK 2018 2014 2017 2039 C2' G B 43 OK 2041 2037 2040 2062 C2' G B 44 OK 2064 2060 2063 2085 C2' A B 45 OK 2087 2083 2086 2107 C2' G B 46 OK 2109 2105 2108 2130 C2' U B 47 OK 2132 2128 2131 2150 C2' U B 48 OK 2152 2148 2151 2170 C2' U B 49 OK 2172 2168 2171 2190 C2' C B 50 OK 2192 2188 2191 2210 C2' U B 51 OK 2212 2208 2211 2230 C2' A B 52 OK 2232 2228 2231 2252 C2' C B 53 OK 2254 2250 2253 2272 C2' C B 54 OK 2274 2270 2273 2292 C2' A B 55 OK 2294 2290 2293 2314 C2' A B 56 OK 2316 2312 2315 2336 C2' G B 57 OK 2338 2334 2337 2359 C2' A B 58 OK 2361 2357 2360 2381 C2' G B 59 OK 2383 2379 2382 2404 C2' C B 60 OK 2406 2402 2405 2424 C2' C B 61 OK 2426 2422 2425 2444 C2' U B 62 OK 2446 2442 2445 2464 C2' U B 63 OK 2466 2462 2465 2484 C2' A B 64 OK 2486 2482 2485 2506 C2' A B 65 OK 2508 2504 2507 2528 C2' A B 66 OK 2530 2526 2529 2550 C2' C B 67 OK 2552 2548 2551 2570 C2' U B 68 OK 2572 2568 2571 2590 C2' C B 69 OK 2592 2588 2591 2610 C2' U B 70 OK 2612 2608 2611 2630 C2' U B 71 OK 2632 2628 2631 2650 C2' G B 72 OK 2652 2648 2651 2673 C2' A B 73 OK 2675 2671 2674 2695 C2' U B 74 OK 2697 2693 2696 2715 C2' U B 75 OK 2717 2713 2716 2735 C2' A B 76 OK 2737 2733 2736 2757 C2' U B 77 OK 2759 2755 2758 2777 C2' C B 78 OK 2779 2775 2778 2797 C2' U B 79 OK 2799 2795 2798 2817 C2' U B 80 OK 2819 2815 2818 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 9 C3' G A 13 OK 7 10 11 32 C3' G A 14 OK 30 33 34 55 C3' G A 15 OK 53 56 57 78 C3' A A 16 OK 76 79 80 100 C3' A A 17 OK 98 101 102 122 C3' G A 18 OK 120 123 124 145 C3' A A 19 OK 143 146 147 167 C3' U A 20 OK 165 168 169 187 C3' A A 21 OK 185 188 189 209 C3' U A 22 OK 207 210 211 229 C3' A A 23 OK 227 230 231 251 C3' A A 24 OK 249 252 253 273 C3' U A 25 OK 271 274 275 293 C3' C A 26 OK 291 294 295 313 C3' C A 27 OK 311 314 315 333 C3' U A 28 OK 331 334 335 353 C3' A A 29 OK 351 354 355 375 C3' A A 30 OK 373 376 377 397 C3' U A 31 OK 395 398 399 417 C3' G A 32 OK 415 418 419 440 C3' A A 33 OK 438 441 442 462 C3' U A 34 OK 460 463 464 482 C3' A A 35 OK 480 483 484 504 C3' U A 36 OK 502 505 506 524 C3' G A 37 OK 522 525 526 547 C3' G A 38 OK 545 548 549 570 C3' U A 39 OK 568 571 572 590 C3' U A 40 OK 588 591 592 610 C3' U A 41 OK 608 611 612 630 C3' G A 42 OK 628 631 632 653 C3' G A 43 OK 651 654 655 676 C3' G A 44 OK 674 677 678 699 C3' A A 45 OK 697 700 701 721 C3' G A 46 OK 719 722 723 744 C3' U A 47 OK 742 745 746 764 C3' U A 48 OK 762 765 766 784 C3' U A 49 OK 782 785 786 804 C3' C A 50 OK 802 805 806 824 C3' U A 51 OK 822 825 826 844 C3' A A 52 OK 842 845 846 866 C3' C A 53 OK 864 867 868 886 C3' C A 54 OK 884 887 888 906 C3' A A 55 OK 904 907 908 928 C3' A A 56 OK 926 929 930 950 C3' G A 57 OK 948 951 952 973 C3' A A 58 OK 971 974 975 995 C3' G A 59 OK 993 996 997 1018 C3' C A 60 OK 1016 1019 1020 1038 C3' C A 61 OK 1036 1039 1040 1058 C3' U A 62 OK 1056 1059 1060 1078 C3' U A 63 OK 1076 1079 1080 1098 C3' A A 64 OK 1096 1099 1100 1120 C3' A A 65 OK 1118 1121 1122 1142 C3' A A 66 OK 1140 1143 1144 1164 C3' C A 67 OK 1162 1165 1166 1184 C3' U A 68 OK 1182 1185 1186 1204 C3' C A 69 OK 1202 1205 1206 1224 C3' U A 70 OK 1222 1225 1226 1244 C3' U A 71 OK 1242 1245 1246 1264 C3' G A 72 OK 1262 1265 1266 1287 C3' A A 73 OK 1285 1288 1289 1309 C3' U A 74 OK 1307 1310 1311 1329 C3' U A 75 OK 1327 1330 1331 1349 C3' A A 76 OK 1347 1350 1351 1371 C3' U A 77 OK 1369 1372 1373 1393 C3' G B 13 OK 1391 1394 1395 1416 C3' G B 14 OK 1414 1417 1418 1439 C3' G B 15 OK 1437 1440 1441 1462 C3' A B 16 OK 1460 1463 1464 1484 C3' A B 17 OK 1482 1485 1486 1506 C3' G B 18 OK 1504 1507 1508 1529 C3' A B 19 OK 1527 1530 1531 1551 C3' U B 20 OK 1549 1552 1553 1571 C3' A B 21 OK 1569 1572 1573 1593 C3' U B 22 OK 1591 1594 1595 1613 C3' A B 23 OK 1611 1614 1615 1635 C3' A B 24 OK 1633 1636 1637 1657 C3' U B 25 OK 1655 1658 1659 1677 C3' C B 26 OK 1675 1678 1679 1697 C3' C B 27 OK 1695 1698 1699 1717 C3' U B 28 OK 1715 1718 1719 1737 C3' A B 29 OK 1735 1738 1739 1759 C3' A B 30 OK 1757 1760 1761 1781 C3' U B 31 OK 1779 1782 1783 1801 C3' G B 32 OK 1799 1802 1803 1824 C3' A B 33 OK 1822 1825 1826 1846 C3' U B 34 OK 1844 1847 1848 1866 C3' A B 35 OK 1864 1867 1868 1888 C3' U B 36 OK 1886 1889 1890 1908 C3' G B 37 OK 1906 1909 1910 1931 C3' G B 38 OK 1929 1932 1933 1954 C3' U B 39 OK 1952 1955 1956 1974 C3' U B 40 OK 1972 1975 1976 1994 C3' U B 41 OK 1992 1995 1996 2014 C3' G B 42 OK 2012 2015 2016 2037 C3' G B 43 OK 2035 2038 2039 2060 C3' G B 44 OK 2058 2061 2062 2083 C3' A B 45 OK 2081 2084 2085 2105 C3' G B 46 OK 2103 2106 2107 2128 C3' U B 47 OK 2126 2129 2130 2148 C3' U B 48 OK 2146 2149 2150 2168 C3' U B 49 OK 2166 2169 2170 2188 C3' C B 50 OK 2186 2189 2190 2208 C3' U B 51 OK 2206 2209 2210 2228 C3' A B 52 OK 2226 2229 2230 2250 C3' C B 53 OK 2248 2251 2252 2270 C3' C B 54 OK 2268 2271 2272 2290 C3' A B 55 OK 2288 2291 2292 2312 C3' A B 56 OK 2310 2313 2314 2334 C3' G B 57 OK 2332 2335 2336 2357 C3' A B 58 OK 2355 2358 2359 2379 C3' G B 59 OK 2377 2380 2381 2402 C3' C B 60 OK 2400 2403 2404 2422 C3' C B 61 OK 2420 2423 2424 2442 C3' U B 62 OK 2440 2443 2444 2462 C3' U B 63 OK 2460 2463 2464 2482 C3' A B 64 OK 2480 2483 2484 2504 C3' A B 65 OK 2502 2505 2506 2526 C3' A B 66 OK 2524 2527 2528 2548 C3' C B 67 OK 2546 2549 2550 2568 C3' U B 68 OK 2566 2569 2570 2588 C3' C B 69 OK 2586 2589 2590 2608 C3' U B 70 OK 2606 2609 2610 2628 C3' U B 71 OK 2626 2629 2630 2648 C3' G B 72 OK 2646 2649 2650 2671 C3' A B 73 OK 2669 2672 2673 2693 C3' U B 74 OK 2691 2694 2695 2713 C3' U B 75 OK 2711 2714 2715 2733 C3' A B 76 OK 2731 2734 2735 2755 C3' U B 77 OK 2753 2756 2757 2775 C3' C B 78 OK 2773 2776 2777 2795 C3' U B 79 OK 2793 2796 2797 2815 C3' U B 80 OK 2813 2816 2817 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 7 C4' G A 13 OK 9 6 8 30 C4' G A 14 OK 32 29 31 53 C4' G A 15 OK 55 52 54 76 C4' A A 16 OK 78 75 77 98 C4' A A 17 OK 100 97 99 120 C4' G A 18 OK 122 119 121 143 C4' A A 19 OK 145 142 144 165 C4' U A 20 OK 167 164 166 185 C4' A A 21 OK 187 184 186 207 C4' U A 22 OK 209 206 208 227 C4' A A 23 OK 229 226 228 249 C4' A A 24 OK 251 248 250 271 C4' U A 25 OK 273 270 272 291 C4' C A 26 OK 293 290 292 311 C4' C A 27 OK 313 310 312 331 C4' U A 28 OK 333 330 332 351 C4' A A 29 OK 353 350 352 373 C4' A A 30 OK 375 372 374 395 C4' U A 31 OK 397 394 396 415 C4' G A 32 OK 417 414 416 438 C4' A A 33 OK 440 437 439 460 C4' U A 34 OK 462 459 461 480 C4' A A 35 OK 482 479 481 502 C4' U A 36 OK 504 501 503 522 C4' G A 37 OK 524 521 523 545 C4' G A 38 OK 547 544 546 568 C4' U A 39 OK 570 567 569 588 C4' U A 40 OK 590 587 589 608 C4' U A 41 OK 610 607 609 628 C4' G A 42 OK 630 627 629 651 C4' G A 43 OK 653 650 652 674 C4' G A 44 OK 676 673 675 697 C4' A A 45 OK 699 696 698 719 C4' G A 46 OK 721 718 720 742 C4' U A 47 OK 744 741 743 762 C4' U A 48 OK 764 761 763 782 C4' U A 49 OK 784 781 783 802 C4' C A 50 OK 804 801 803 822 C4' U A 51 OK 824 821 823 842 C4' A A 52 OK 844 841 843 864 C4' C A 53 OK 866 863 865 884 C4' C A 54 OK 886 883 885 904 C4' A A 55 OK 906 903 905 926 C4' A A 56 OK 928 925 927 948 C4' G A 57 OK 950 947 949 971 C4' A A 58 OK 973 970 972 993 C4' G A 59 OK 995 992 994 1016 C4' C A 60 OK 1018 1015 1017 1036 C4' C A 61 OK 1038 1035 1037 1056 C4' U A 62 OK 1058 1055 1057 1076 C4' U A 63 OK 1078 1075 1077 1096 C4' A A 64 OK 1098 1095 1097 1118 C4' A A 65 OK 1120 1117 1119 1140 C4' A A 66 OK 1142 1139 1141 1162 C4' C A 67 OK 1164 1161 1163 1182 C4' U A 68 OK 1184 1181 1183 1202 C4' C A 69 OK 1204 1201 1203 1222 C4' U A 70 OK 1224 1221 1223 1242 C4' U A 71 OK 1244 1241 1243 1262 C4' G A 72 OK 1264 1261 1263 1285 C4' A A 73 OK 1287 1284 1286 1307 C4' U A 74 OK 1309 1306 1308 1327 C4' U A 75 OK 1329 1326 1328 1347 C4' A A 76 OK 1349 1346 1348 1369 C4' U A 77 OK 1371 1368 1370 1391 C4' G B 13 OK 1393 1390 1392 1414 C4' G B 14 OK 1416 1413 1415 1437 C4' G B 15 OK 1439 1436 1438 1460 C4' A B 16 OK 1462 1459 1461 1482 C4' A B 17 OK 1484 1481 1483 1504 C4' G B 18 OK 1506 1503 1505 1527 C4' A B 19 OK 1529 1526 1528 1549 C4' U B 20 OK 1551 1548 1550 1569 C4' A B 21 OK 1571 1568 1570 1591 C4' U B 22 OK 1593 1590 1592 1611 C4' A B 23 OK 1613 1610 1612 1633 C4' A B 24 OK 1635 1632 1634 1655 C4' U B 25 OK 1657 1654 1656 1675 C4' C B 26 OK 1677 1674 1676 1695 C4' C B 27 OK 1697 1694 1696 1715 C4' U B 28 OK 1717 1714 1716 1735 C4' A B 29 OK 1737 1734 1736 1757 C4' A B 30 OK 1759 1756 1758 1779 C4' U B 31 OK 1781 1778 1780 1799 C4' G B 32 OK 1801 1798 1800 1822 C4' A B 33 OK 1824 1821 1823 1844 C4' U B 34 OK 1846 1843 1845 1864 C4' A B 35 OK 1866 1863 1865 1886 C4' U B 36 OK 1888 1885 1887 1906 C4' G B 37 OK 1908 1905 1907 1929 C4' G B 38 OK 1931 1928 1930 1952 C4' U B 39 OK 1954 1951 1953 1972 C4' U B 40 OK 1974 1971 1973 1992 C4' U B 41 OK 1994 1991 1993 2012 C4' G B 42 OK 2014 2011 2013 2035 C4' G B 43 OK 2037 2034 2036 2058 C4' G B 44 OK 2060 2057 2059 2081 C4' A B 45 OK 2083 2080 2082 2103 C4' G B 46 OK 2105 2102 2104 2126 C4' U B 47 OK 2128 2125 2127 2146 C4' U B 48 OK 2148 2145 2147 2166 C4' U B 49 OK 2168 2165 2167 2186 C4' C B 50 OK 2188 2185 2187 2206 C4' U B 51 OK 2208 2205 2207 2226 C4' A B 52 OK 2228 2225 2227 2248 C4' C B 53 OK 2250 2247 2249 2268 C4' C B 54 OK 2270 2267 2269 2288 C4' A B 55 OK 2290 2287 2289 2310 C4' A B 56 OK 2312 2309 2311 2332 C4' G B 57 OK 2334 2331 2333 2355 C4' A B 58 OK 2357 2354 2356 2377 C4' G B 59 OK 2379 2376 2378 2400 C4' C B 60 OK 2402 2399 2401 2420 C4' C B 61 OK 2422 2419 2421 2440 C4' U B 62 OK 2442 2439 2441 2460 C4' U B 63 OK 2462 2459 2461 2480 C4' A B 64 OK 2482 2479 2481 2502 C4' A B 65 OK 2504 2501 2503 2524 C4' A B 66 OK 2526 2523 2525 2546 C4' C B 67 OK 2548 2545 2547 2566 C4' U B 68 OK 2568 2565 2567 2586 C4' C B 69 OK 2588 2585 2587 2606 C4' U B 70 OK 2608 2605 2607 2626 C4' U B 71 OK 2628 2625 2627 2646 C4' G B 72 OK 2648 2645 2647 2669 C4' A B 73 OK 2671 2668 2670 2691 C4' U B 74 OK 2693 2690 2692 2711 C4' U B 75 OK 2713 2710 2712 2731 C4' A B 76 OK 2733 2730 2732 2753 C4' U B 77 OK 2755 2752 2754 2773 C4' C B 78 OK 2775 2772 2774 2793 C4' U B 79 OK 2795 2792 2794 2813 C4' U B 80 OK 2815 2812 2814 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 6 C5' G A 13 5 7 29 C5' G A 14 28 30 52 C5' G A 15 51 53 75 C5' A A 16 74 76 97 C5' A A 17 96 98 119 C5' G A 18 118 120 142 C5' A A 19 141 143 164 C5' U A 20 163 165 184 C5' A A 21 183 185 206 C5' U A 22 205 207 226 C5' A A 23 225 227 248 C5' A A 24 247 249 270 C5' U A 25 269 271 290 C5' C A 26 289 291 310 C5' C A 27 309 311 330 C5' U A 28 329 331 350 C5' A A 29 349 351 372 C5' A A 30 371 373 394 C5' U A 31 393 395 414 C5' G A 32 413 415 437 C5' A A 33 436 438 459 C5' U A 34 458 460 479 C5' A A 35 478 480 501 C5' U A 36 500 502 521 C5' G A 37 520 522 544 C5' G A 38 543 545 567 C5' U A 39 566 568 587 C5' U A 40 586 588 607 C5' U A 41 606 608 627 C5' G A 42 626 628 650 C5' G A 43 649 651 673 C5' G A 44 672 674 696 C5' A A 45 695 697 718 C5' G A 46 717 719 741 C5' U A 47 740 742 761 C5' U A 48 760 762 781 C5' U A 49 780 782 801 C5' C A 50 800 802 821 C5' U A 51 820 822 841 C5' A A 52 840 842 863 C5' C A 53 862 864 883 C5' C A 54 882 884 903 C5' A A 55 902 904 925 C5' A A 56 924 926 947 C5' G A 57 946 948 970 C5' A A 58 969 971 992 C5' G A 59 991 993 1015 C5' C A 60 1014 1016 1035 C5' C A 61 1034 1036 1055 C5' U A 62 1054 1056 1075 C5' U A 63 1074 1076 1095 C5' A A 64 1094 1096 1117 C5' A A 65 1116 1118 1139 C5' A A 66 1138 1140 1161 C5' C A 67 1160 1162 1181 C5' U A 68 1180 1182 1201 C5' C A 69 1200 1202 1221 C5' U A 70 1220 1222 1241 C5' U A 71 1240 1242 1261 C5' G A 72 1260 1262 1284 C5' A A 73 1283 1285 1306 C5' U A 74 1305 1307 1326 C5' U A 75 1325 1327 1346 C5' A A 76 1345 1347 1368 C5' U A 77 1367 1369 1390 C5' G B 13 1389 1391 1413 C5' G B 14 1412 1414 1436 C5' G B 15 1435 1437 1459 C5' A B 16 1458 1460 1481 C5' A B 17 1480 1482 1503 C5' G B 18 1502 1504 1526 C5' A B 19 1525 1527 1548 C5' U B 20 1547 1549 1568 C5' A B 21 1567 1569 1590 C5' U B 22 1589 1591 1610 C5' A B 23 1609 1611 1632 C5' A B 24 1631 1633 1654 C5' U B 25 1653 1655 1674 C5' C B 26 1673 1675 1694 C5' C B 27 1693 1695 1714 C5' U B 28 1713 1715 1734 C5' A B 29 1733 1735 1756 C5' A B 30 1755 1757 1778 C5' U B 31 1777 1779 1798 C5' G B 32 1797 1799 1821 C5' A B 33 1820 1822 1843 C5' U B 34 1842 1844 1863 C5' A B 35 1862 1864 1885 C5' U B 36 1884 1886 1905 C5' G B 37 1904 1906 1928 C5' G B 38 1927 1929 1951 C5' U B 39 1950 1952 1971 C5' U B 40 1970 1972 1991 C5' U B 41 1990 1992 2011 C5' G B 42 2010 2012 2034 C5' G B 43 2033 2035 2057 C5' G B 44 2056 2058 2080 C5' A B 45 2079 2081 2102 C5' G B 46 2101 2103 2125 C5' U B 47 2124 2126 2145 C5' U B 48 2144 2146 2165 C5' U B 49 2164 2166 2185 C5' C B 50 2184 2186 2205 C5' U B 51 2204 2206 2225 C5' A B 52 2224 2226 2247 C5' C B 53 2246 2248 2267 C5' C B 54 2266 2268 2287 C5' A B 55 2286 2288 2309 C5' A B 56 2308 2310 2331 C5' G B 57 2330 2332 2354 C5' A B 58 2353 2355 2376 C5' G B 59 2375 2377 2399 C5' C B 60 2398 2400 2419 C5' C B 61 2418 2420 2439 C5' U B 62 2438 2440 2459 C5' U B 63 2458 2460 2479 C5' A B 64 2478 2480 2501 C5' A B 65 2500 2502 2523 C5' A B 66 2522 2524 2545 C5' C B 67 2544 2546 2565 C5' U B 68 2564 2566 2585 C5' C B 69 2584 2586 2605 C5' U B 70 2604 2606 2625 C5' U B 71 2624 2626 2645 C5' G B 72 2644 2646 2668 C5' A B 73 2667 2669 2690 C5' U B 74 2689 2691 2710 C5' U B 75 2709 2711 2730 C5' A B 76 2729 2731 2752 C5' U B 77 2751 2753 2772 C5' C B 78 2771 2773 2792 C5' U B 79 2791 2793 2812 C5' U B 80 2811 2813 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 2 P G A 13 OK OK 3 4 5 25 P G A 14 distorted distorted 10 26 27 28 48 P G A 15 distorted distorted 33 49 50 51 71 P A A 16 distorted distorted 56 72 73 74 93 P A A 17 distorted distorted 79 94 95 96 115 P G A 18 distorted distorted 101 116 117 118 138 P A A 19 distorted distorted 123 139 140 141 160 P U A 20 distorted distorted 146 161 162 163 180 P A A 21 distorted distorted 168 181 182 183 202 P U A 22 distorted distorted 188 203 204 205 222 P A A 23 distorted distorted 210 223 224 225 244 P A A 24 distorted distorted 230 245 246 247 266 P U A 25 distorted distorted 252 267 268 269 286 P C A 26 distorted distorted 274 287 288 289 306 P C A 27 distorted distorted 294 307 308 309 326 P U A 28 distorted distorted 314 327 328 329 346 P A A 29 distorted distorted 334 347 348 349 368 P A A 30 distorted distorted 354 369 370 371 390 P U A 31 distorted distorted 376 391 392 393 410 P G A 32 distorted distorted 398 411 412 413 433 P A A 33 distorted distorted 418 434 435 436 455 P U A 34 distorted distorted 441 456 457 458 475 P A A 35 distorted distorted 463 476 477 478 497 P U A 36 distorted distorted 483 498 499 500 517 P G A 37 distorted distorted 505 518 519 520 540 P G A 38 distorted distorted 525 541 542 543 563 P U A 39 distorted distorted 548 564 565 566 583 P U A 40 distorted distorted 571 584 585 586 603 P U A 41 distorted distorted 591 604 605 606 623 P G A 42 distorted distorted 611 624 625 626 646 P G A 43 distorted distorted 631 647 648 649 669 P G A 44 distorted distorted 654 670 671 672 692 P A A 45 distorted distorted 677 693 694 695 714 P G A 46 distorted distorted 700 715 716 717 737 P U A 47 distorted distorted 722 738 739 740 757 P U A 48 distorted distorted 745 758 759 760 777 P U A 49 distorted distorted 765 778 779 780 797 P C A 50 distorted distorted 785 798 799 800 817 P U A 51 distorted distorted 805 818 819 820 837 P A A 52 distorted distorted 825 838 839 840 859 P C A 53 distorted distorted 845 860 861 862 879 P C A 54 distorted distorted 867 880 881 882 899 P A A 55 distorted distorted 887 900 901 902 921 P A A 56 distorted distorted 907 922 923 924 943 P G A 57 distorted distorted 929 944 945 946 966 P A A 58 distorted distorted 951 967 968 969 988 P G A 59 distorted distorted 974 989 990 991 1011 P C A 60 distorted distorted 996 1012 1013 1014 1031 P C A 61 distorted distorted 1019 1032 1033 1034 1051 P U A 62 distorted distorted 1039 1052 1053 1054 1071 P U A 63 distorted distorted 1059 1072 1073 1074 1091 P A A 64 distorted distorted 1079 1092 1093 1094 1113 P A A 65 distorted distorted 1099 1114 1115 1116 1135 P A A 66 distorted distorted 1121 1136 1137 1138 1157 P C A 67 distorted distorted 1143 1158 1159 1160 1177 P U A 68 distorted distorted 1165 1178 1179 1180 1197 P C A 69 distorted distorted 1185 1198 1199 1200 1217 P U A 70 distorted distorted 1205 1218 1219 1220 1237 P U A 71 distorted distorted 1225 1238 1239 1240 1257 P G A 72 distorted distorted 1245 1258 1259 1260 1280 P A A 73 distorted distorted 1265 1281 1282 1283 1302 P U A 74 distorted distorted 1288 1303 1304 1305 1322 P U A 75 distorted distorted 1310 1323 1324 1325 1342 P A A 76 distorted distorted 1330 1343 1344 1345 1364 P U A 77 distorted distorted 1350 1365 1366 1367 1386 P G B 13 OK OK 1387 1388 1389 1409 P G B 14 distorted distorted 1394 1410 1411 1412 1432 P G B 15 distorted distorted 1417 1433 1434 1435 1455 P A B 16 distorted distorted 1440 1456 1457 1458 1477 P A B 17 distorted distorted 1463 1478 1479 1480 1499 P G B 18 distorted distorted 1485 1500 1501 1502 1522 P A B 19 distorted distorted 1507 1523 1524 1525 1544 P U B 20 distorted distorted 1530 1545 1546 1547 1564 P A B 21 distorted distorted 1552 1565 1566 1567 1586 P U B 22 distorted distorted 1572 1587 1588 1589 1606 P A B 23 distorted distorted 1594 1607 1608 1609 1628 P A B 24 distorted distorted 1614 1629 1630 1631 1650 P U B 25 distorted distorted 1636 1651 1652 1653 1670 P C B 26 distorted distorted 1658 1671 1672 1673 1690 P C B 27 distorted distorted 1678 1691 1692 1693 1710 P U B 28 distorted distorted 1698 1711 1712 1713 1730 P A B 29 distorted distorted 1718 1731 1732 1733 1752 P A B 30 distorted distorted 1738 1753 1754 1755 1774 P U B 31 distorted distorted 1760 1775 1776 1777 1794 P G B 32 distorted distorted 1782 1795 1796 1797 1817 P A B 33 distorted distorted 1802 1818 1819 1820 1839 P U B 34 distorted distorted 1825 1840 1841 1842 1859 P A B 35 distorted distorted 1847 1860 1861 1862 1881 P U B 36 distorted distorted 1867 1882 1883 1884 1901 P G B 37 distorted distorted 1889 1902 1903 1904 1924 P G B 38 distorted distorted 1909 1925 1926 1927 1947 P U B 39 distorted distorted 1932 1948 1949 1950 1967 P U B 40 distorted distorted 1955 1968 1969 1970 1987 P U B 41 distorted distorted 1975 1988 1989 1990 2007 P G B 42 distorted distorted 1995 2008 2009 2010 2030 P G B 43 distorted distorted 2015 2031 2032 2033 2053 P G B 44 distorted distorted 2038 2054 2055 2056 2076 P A B 45 distorted distorted 2061 2077 2078 2079 2098 P G B 46 distorted distorted 2084 2099 2100 2101 2121 P U B 47 distorted distorted 2106 2122 2123 2124 2141 P U B 48 distorted distorted 2129 2142 2143 2144 2161 P U B 49 distorted distorted 2149 2162 2163 2164 2181 P C B 50 distorted distorted 2169 2182 2183 2184 2201 P U B 51 distorted distorted 2189 2202 2203 2204 2221 P A B 52 distorted distorted 2209 2222 2223 2224 2243 P C B 53 distorted distorted 2229 2244 2245 2246 2263 P C B 54 distorted distorted 2251 2264 2265 2266 2283 P A B 55 distorted distorted 2271 2284 2285 2286 2305 P A B 56 distorted distorted 2291 2306 2307 2308 2327 P G B 57 distorted distorted 2313 2328 2329 2330 2350 P A B 58 distorted distorted 2335 2351 2352 2353 2372 P G B 59 distorted distorted 2358 2373 2374 2375 2395 P C B 60 distorted distorted 2380 2396 2397 2398 2415 P C B 61 distorted distorted 2403 2416 2417 2418 2435 P U B 62 distorted distorted 2423 2436 2437 2438 2455 P U B 63 distorted distorted 2443 2456 2457 2458 2475 P A B 64 distorted distorted 2463 2476 2477 2478 2497 P A B 65 distorted distorted 2483 2498 2499 2500 2519 P A B 66 distorted distorted 2505 2520 2521 2522 2541 P C B 67 distorted distorted 2527 2542 2543 2544 2561 P U B 68 distorted distorted 2549 2562 2563 2564 2581 P C B 69 distorted distorted 2569 2582 2583 2584 2601 P U B 70 distorted distorted 2589 2602 2603 2604 2621 P U B 71 distorted distorted 2609 2622 2623 2624 2641 P G B 72 distorted distorted 2629 2642 2643 2644 2664 P A B 73 distorted distorted 2649 2665 2666 2667 2686 P U B 74 distorted distorted 2672 2687 2688 2689 2706 P U B 75 distorted distorted 2694 2707 2708 2709 2726 P A B 76 distorted distorted 2714 2727 2728 2729 2748 P U B 77 distorted distorted 2734 2749 2750 2751 2768 P C B 78 distorted distorted 2756 2769 2770 2771 2788 P U B 79 distorted distorted 2776 2789 2790 2791 2808 P U B 80 distorted distorted 2796 2809 2810 2811 ---------------------------------------------------------------------------------