ID code: '5DDP' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 9 C1' C A 1 beta 4 10 7 29 C1' G A 2 beta 24 30 27 52 C1' U A 3 beta 47 53 50 72 C1' U A 4 beta 67 73 70 92 C1' G A 5 beta 87 93 90 115 C1' A A 6 beta 110 116 113 137 C1' C A 7 beta 132 138 135 157 C1' C A 8 beta 152 158 155 177 C1' C A 9 beta 172 178 175 197 C1' A A 10 beta 192 198 195 219 C1' G A 11 beta 214 220 217 242 C1' G A 12 beta 237 243 240 265 C1' A A 13 beta 260 266 263 287 C1' A A 14 beta 282 288 285 309 C1' A A 15 beta 304 310 307 331 C1' C A 16 beta 326 332 329 351 C1' U A 17 beta 346 352 349 371 C1' G A 18 beta 366 372 369 394 C1' G A 19 beta 389 395 392 417 C1' G A 20 beta 412 418 415 440 C1' C A 21 beta 435 441 438 460 C1' G A 22 beta 455 461 458 483 C1' G A 23 beta 478 484 481 506 C1' A A 24 beta 501 507 504 528 C1' A A 25 beta 523 529 526 550 C1' G A 26 beta 545 551 548 573 C1' U A 27 beta 568 574 571 593 C1' A A 28 beta 588 594 591 615 C1' A A 29 beta 610 616 613 637 C1' G A 30 beta 632 638 635 660 C1' G A 31 beta 655 661 658 683 C1' U A 32 beta 678 684 681 703 C1' C A 33 beta 698 704 701 723 C1' C A 34 beta 718 724 721 743 C1' A A 35 beta 738 744 741 765 C1' U A 36 beta 760 766 763 785 C1' U A 37 beta 780 786 783 805 C1' G A 38 beta 800 806 803 828 C1' C A 39 beta 823 829 826 848 C1' A A 40 beta 843 849 846 870 C1' C A 41 beta 865 871 868 890 C1' U A 42 beta 885 891 888 910 C1' C A 43 beta 905 911 908 930 C1' C A 44 beta 925 931 928 950 C1' G A 45 beta 945 951 948 973 C1' G A 46 beta 968 974 971 996 C1' G A 47 beta 991 997 994 1019 C1' C A 48 beta 1014 1020 1017 1039 C1' C A 49 beta 1034 1040 1037 1059 C1' U A 50 beta 1054 1060 1057 1079 C1' G A 51 beta 1074 1080 1077 1102 C1' A A 52 beta 1097 1103 1100 1124 C1' A A 53 beta 1119 1125 1122 1146 C1' G A 54 beta 1141 1147 1144 1169 C1' C A 55 beta 1164 1170 1167 1189 C1' A A 56 beta 1184 1190 1187 1211 C1' A A 57 beta 1206 1212 1209 1233 C1' C A 58 beta 1228 1234 1231 1253 C1' G A 59 beta 1248 1254 1251 1276 C1' C A 60 beta 1271 1277 1274 1296 C1' G A 61 beta 1291 1297 1294 1317 C1' C B 1 beta 1312 1318 1315 1337 C1' G B 2 beta 1332 1338 1335 1360 C1' U B 3 beta 1355 1361 1358 1380 C1' U B 4 beta 1375 1381 1378 1400 C1' G B 5 beta 1395 1401 1398 1423 C1' A B 6 beta 1418 1424 1421 1445 C1' C B 7 beta 1440 1446 1443 1465 C1' C B 8 beta 1460 1466 1463 1485 C1' C B 9 beta 1480 1486 1483 1505 C1' A B 10 beta 1500 1506 1503 1527 C1' G B 11 beta 1522 1528 1525 1550 C1' G B 12 beta 1545 1551 1548 1573 C1' A B 13 beta 1568 1574 1571 1595 C1' A B 14 beta 1590 1596 1593 1617 C1' A B 15 beta 1612 1618 1615 1639 C1' C B 16 beta 1634 1640 1637 1659 C1' U B 17 beta 1654 1660 1657 1679 C1' G B 18 beta 1674 1680 1677 1702 C1' G B 19 beta 1697 1703 1700 1725 C1' G B 20 beta 1720 1726 1723 1748 C1' C B 21 beta 1743 1749 1746 1768 C1' G B 22 beta 1763 1769 1766 1791 C1' G B 23 beta 1786 1792 1789 1814 C1' A B 24 beta 1809 1815 1812 1836 C1' A B 25 beta 1831 1837 1834 1858 C1' G B 26 beta 1853 1859 1856 1881 C1' U B 27 beta 1876 1882 1879 1901 C1' A B 28 beta 1896 1902 1899 1923 C1' A B 29 beta 1918 1924 1921 1945 C1' G B 30 beta 1940 1946 1943 1968 C1' G B 31 beta 1963 1969 1966 1991 C1' U B 32 beta 1986 1992 1989 2011 C1' C B 33 beta 2006 2012 2009 2031 C1' C B 34 beta 2026 2032 2029 2051 C1' A B 35 beta 2046 2052 2049 2073 C1' U B 36 beta 2068 2074 2071 2093 C1' U B 37 beta 2088 2094 2091 2113 C1' G B 38 beta 2108 2114 2111 2136 C1' C B 39 beta 2131 2137 2134 2156 C1' A B 40 beta 2151 2157 2154 2178 C1' C B 41 beta 2173 2179 2176 2198 C1' U B 42 beta 2193 2199 2196 2218 C1' C B 43 beta 2213 2219 2216 2238 C1' C B 44 beta 2233 2239 2236 2258 C1' G B 45 beta 2253 2259 2256 2281 C1' G B 46 beta 2276 2282 2279 2304 C1' G B 47 beta 2299 2305 2302 2327 C1' C B 48 beta 2322 2328 2325 2347 C1' C B 49 beta 2342 2348 2345 2367 C1' U B 50 beta 2362 2368 2365 2387 C1' G B 51 beta 2382 2388 2385 2410 C1' A B 52 beta 2405 2411 2408 2432 C1' A B 53 beta 2427 2433 2430 2454 C1' G B 54 beta 2449 2455 2452 2477 C1' C B 55 beta 2472 2478 2475 2497 C1' A B 56 beta 2492 2498 2495 2519 C1' A B 57 beta 2514 2520 2517 2541 C1' C B 58 beta 2536 2542 2539 2561 C1' G B 59 beta 2556 2562 2559 2584 C1' C B 60 beta 2579 2585 2582 2604 C1' G B 61 beta 2599 2605 2602 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 7 C2' C A 1 OK 9 5 8 27 C2' G A 2 OK 29 25 28 50 C2' U A 3 OK 52 48 51 70 C2' U A 4 OK 72 68 71 90 C2' G A 5 OK 92 88 91 113 C2' A A 6 OK 115 111 114 135 C2' C A 7 OK 137 133 136 155 C2' C A 8 OK 157 153 156 175 C2' C A 9 OK 177 173 176 195 C2' A A 10 OK 197 193 196 217 C2' G A 11 OK 219 215 218 240 C2' G A 12 OK 242 238 241 263 C2' A A 13 OK 265 261 264 285 C2' A A 14 OK 287 283 286 307 C2' A A 15 OK 309 305 308 329 C2' C A 16 OK 331 327 330 349 C2' U A 17 OK 351 347 350 369 C2' G A 18 OK 371 367 370 392 C2' G A 19 OK 394 390 393 415 C2' G A 20 OK 417 413 416 438 C2' C A 21 OK 440 436 439 458 C2' G A 22 OK 460 456 459 481 C2' G A 23 OK 483 479 482 504 C2' A A 24 OK 506 502 505 526 C2' A A 25 OK 528 524 527 548 C2' G A 26 OK 550 546 549 571 C2' U A 27 OK 573 569 572 591 C2' A A 28 OK 593 589 592 613 C2' A A 29 OK 615 611 614 635 C2' G A 30 OK 637 633 636 658 C2' G A 31 OK 660 656 659 681 C2' U A 32 OK 683 679 682 701 C2' C A 33 OK 703 699 702 721 C2' C A 34 OK 723 719 722 741 C2' A A 35 OK 743 739 742 763 C2' U A 36 OK 765 761 764 783 C2' U A 37 OK 785 781 784 803 C2' G A 38 OK 805 801 804 826 C2' C A 39 OK 828 824 827 846 C2' A A 40 OK 848 844 847 868 C2' C A 41 OK 870 866 869 888 C2' U A 42 OK 890 886 889 908 C2' C A 43 OK 910 906 909 928 C2' C A 44 OK 930 926 929 948 C2' G A 45 OK 950 946 949 971 C2' G A 46 OK 973 969 972 994 C2' G A 47 OK 996 992 995 1017 C2' C A 48 OK 1019 1015 1018 1037 C2' C A 49 OK 1039 1035 1038 1057 C2' U A 50 OK 1059 1055 1058 1077 C2' G A 51 OK 1079 1075 1078 1100 C2' A A 52 OK 1102 1098 1101 1122 C2' A A 53 OK 1124 1120 1123 1144 C2' G A 54 OK 1146 1142 1145 1167 C2' C A 55 OK 1169 1165 1168 1187 C2' A A 56 OK 1189 1185 1188 1209 C2' A A 57 OK 1211 1207 1210 1231 C2' C A 58 OK 1233 1229 1232 1251 C2' G A 59 OK 1253 1249 1252 1274 C2' C A 60 OK 1276 1272 1275 1294 C2' G A 61 OK 1296 1292 1295 1315 C2' C B 1 OK 1317 1313 1316 1335 C2' G B 2 OK 1337 1333 1336 1358 C2' U B 3 OK 1360 1356 1359 1378 C2' U B 4 OK 1380 1376 1379 1398 C2' G B 5 OK 1400 1396 1399 1421 C2' A B 6 OK 1423 1419 1422 1443 C2' C B 7 OK 1445 1441 1444 1463 C2' C B 8 OK 1465 1461 1464 1483 C2' C B 9 OK 1485 1481 1484 1503 C2' A B 10 OK 1505 1501 1504 1525 C2' G B 11 OK 1527 1523 1526 1548 C2' G B 12 OK 1550 1546 1549 1571 C2' A B 13 OK 1573 1569 1572 1593 C2' A B 14 OK 1595 1591 1594 1615 C2' A B 15 OK 1617 1613 1616 1637 C2' C B 16 OK 1639 1635 1638 1657 C2' U B 17 OK 1659 1655 1658 1677 C2' G B 18 OK 1679 1675 1678 1700 C2' G B 19 OK 1702 1698 1701 1723 C2' G B 20 OK 1725 1721 1724 1746 C2' C B 21 OK 1748 1744 1747 1766 C2' G B 22 OK 1768 1764 1767 1789 C2' G B 23 OK 1791 1787 1790 1812 C2' A B 24 OK 1814 1810 1813 1834 C2' A B 25 OK 1836 1832 1835 1856 C2' G B 26 OK 1858 1854 1857 1879 C2' U B 27 OK 1881 1877 1880 1899 C2' A B 28 OK 1901 1897 1900 1921 C2' A B 29 OK 1923 1919 1922 1943 C2' G B 30 OK 1945 1941 1944 1966 C2' G B 31 OK 1968 1964 1967 1989 C2' U B 32 OK 1991 1987 1990 2009 C2' C B 33 OK 2011 2007 2010 2029 C2' C B 34 OK 2031 2027 2030 2049 C2' A B 35 OK 2051 2047 2050 2071 C2' U B 36 OK 2073 2069 2072 2091 C2' U B 37 OK 2093 2089 2092 2111 C2' G B 38 OK 2113 2109 2112 2134 C2' C B 39 OK 2136 2132 2135 2154 C2' A B 40 OK 2156 2152 2155 2176 C2' C B 41 OK 2178 2174 2177 2196 C2' U B 42 OK 2198 2194 2197 2216 C2' C B 43 OK 2218 2214 2217 2236 C2' C B 44 OK 2238 2234 2237 2256 C2' G B 45 OK 2258 2254 2257 2279 C2' G B 46 OK 2281 2277 2280 2302 C2' G B 47 OK 2304 2300 2303 2325 C2' C B 48 OK 2327 2323 2326 2345 C2' C B 49 OK 2347 2343 2346 2365 C2' U B 50 OK 2367 2363 2366 2385 C2' G B 51 OK 2387 2383 2386 2408 C2' A B 52 OK 2410 2406 2409 2430 C2' A B 53 OK 2432 2428 2431 2452 C2' G B 54 OK 2454 2450 2453 2475 C2' C B 55 OK 2477 2473 2476 2495 C2' A B 56 OK 2497 2493 2496 2517 C2' A B 57 OK 2519 2515 2518 2539 C2' C B 58 OK 2541 2537 2540 2559 C2' G B 59 OK 2561 2557 2560 2582 C2' C B 60 OK 2584 2580 2583 2602 C2' G B 61 OK 2604 2600 2603 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 5 C3' C A 1 OK 3 6 7 25 C3' G A 2 OK 23 26 27 48 C3' U A 3 OK 46 49 50 68 C3' U A 4 OK 66 69 70 88 C3' G A 5 OK 86 89 90 111 C3' A A 6 OK 109 112 113 133 C3' C A 7 OK 131 134 135 153 C3' C A 8 OK 151 154 155 173 C3' C A 9 OK 171 174 175 193 C3' A A 10 OK 191 194 195 215 C3' G A 11 OK 213 216 217 238 C3' G A 12 OK 236 239 240 261 C3' A A 13 OK 259 262 263 283 C3' A A 14 OK 281 284 285 305 C3' A A 15 OK 303 306 307 327 C3' C A 16 OK 325 328 329 347 C3' U A 17 OK 345 348 349 367 C3' G A 18 OK 365 368 369 390 C3' G A 19 OK 388 391 392 413 C3' G A 20 OK 411 414 415 436 C3' C A 21 OK 434 437 438 456 C3' G A 22 OK 454 457 458 479 C3' G A 23 OK 477 480 481 502 C3' A A 24 OK 500 503 504 524 C3' A A 25 OK 522 525 526 546 C3' G A 26 OK 544 547 548 569 C3' U A 27 OK 567 570 571 589 C3' A A 28 OK 587 590 591 611 C3' A A 29 OK 609 612 613 633 C3' G A 30 OK 631 634 635 656 C3' G A 31 OK 654 657 658 679 C3' U A 32 OK 677 680 681 699 C3' C A 33 OK 697 700 701 719 C3' C A 34 OK 717 720 721 739 C3' A A 35 OK 737 740 741 761 C3' U A 36 OK 759 762 763 781 C3' U A 37 OK 779 782 783 801 C3' G A 38 OK 799 802 803 824 C3' C A 39 OK 822 825 826 844 C3' A A 40 OK 842 845 846 866 C3' C A 41 OK 864 867 868 886 C3' U A 42 OK 884 887 888 906 C3' C A 43 OK 904 907 908 926 C3' C A 44 OK 924 927 928 946 C3' G A 45 OK 944 947 948 969 C3' G A 46 OK 967 970 971 992 C3' G A 47 OK 990 993 994 1015 C3' C A 48 OK 1013 1016 1017 1035 C3' C A 49 OK 1033 1036 1037 1055 C3' U A 50 OK 1053 1056 1057 1075 C3' G A 51 OK 1073 1076 1077 1098 C3' A A 52 OK 1096 1099 1100 1120 C3' A A 53 OK 1118 1121 1122 1142 C3' G A 54 OK 1140 1143 1144 1165 C3' C A 55 OK 1163 1166 1167 1185 C3' A A 56 OK 1183 1186 1187 1207 C3' A A 57 OK 1205 1208 1209 1229 C3' C A 58 OK 1227 1230 1231 1249 C3' G A 59 OK 1247 1250 1251 1272 C3' C A 60 OK 1270 1273 1274 1292 C3' G A 61 OK 1290 1293 1294 1313 C3' C B 1 OK 1311 1314 1315 1333 C3' G B 2 OK 1331 1334 1335 1356 C3' U B 3 OK 1354 1357 1358 1376 C3' U B 4 OK 1374 1377 1378 1396 C3' G B 5 OK 1394 1397 1398 1419 C3' A B 6 OK 1417 1420 1421 1441 C3' C B 7 OK 1439 1442 1443 1461 C3' C B 8 OK 1459 1462 1463 1481 C3' C B 9 OK 1479 1482 1483 1501 C3' A B 10 OK 1499 1502 1503 1523 C3' G B 11 OK 1521 1524 1525 1546 C3' G B 12 OK 1544 1547 1548 1569 C3' A B 13 OK 1567 1570 1571 1591 C3' A B 14 OK 1589 1592 1593 1613 C3' A B 15 OK 1611 1614 1615 1635 C3' C B 16 OK 1633 1636 1637 1655 C3' U B 17 OK 1653 1656 1657 1675 C3' G B 18 OK 1673 1676 1677 1698 C3' G B 19 OK 1696 1699 1700 1721 C3' G B 20 OK 1719 1722 1723 1744 C3' C B 21 OK 1742 1745 1746 1764 C3' G B 22 OK 1762 1765 1766 1787 C3' G B 23 OK 1785 1788 1789 1810 C3' A B 24 OK 1808 1811 1812 1832 C3' A B 25 OK 1830 1833 1834 1854 C3' G B 26 OK 1852 1855 1856 1877 C3' U B 27 OK 1875 1878 1879 1897 C3' A B 28 OK 1895 1898 1899 1919 C3' A B 29 OK 1917 1920 1921 1941 C3' G B 30 OK 1939 1942 1943 1964 C3' G B 31 OK 1962 1965 1966 1987 C3' U B 32 OK 1985 1988 1989 2007 C3' C B 33 OK 2005 2008 2009 2027 C3' C B 34 OK 2025 2028 2029 2047 C3' A B 35 OK 2045 2048 2049 2069 C3' U B 36 OK 2067 2070 2071 2089 C3' U B 37 OK 2087 2090 2091 2109 C3' G B 38 OK 2107 2110 2111 2132 C3' C B 39 OK 2130 2133 2134 2152 C3' A B 40 OK 2150 2153 2154 2174 C3' C B 41 OK 2172 2175 2176 2194 C3' U B 42 OK 2192 2195 2196 2214 C3' C B 43 OK 2212 2215 2216 2234 C3' C B 44 OK 2232 2235 2236 2254 C3' G B 45 OK 2252 2255 2256 2277 C3' G B 46 OK 2275 2278 2279 2300 C3' G B 47 OK 2298 2301 2302 2323 C3' C B 48 OK 2321 2324 2325 2343 C3' C B 49 OK 2341 2344 2345 2363 C3' U B 50 OK 2361 2364 2365 2383 C3' G B 51 OK 2381 2384 2385 2406 C3' A B 52 OK 2404 2407 2408 2428 C3' A B 53 OK 2426 2429 2430 2450 C3' G B 54 OK 2448 2451 2452 2473 C3' C B 55 OK 2471 2474 2475 2493 C3' A B 56 OK 2491 2494 2495 2515 C3' A B 57 OK 2513 2516 2517 2537 C3' C B 58 OK 2535 2538 2539 2557 C3' G B 59 OK 2555 2558 2559 2580 C3' C B 60 OK 2578 2581 2582 2600 C3' G B 61 OK 2598 2601 2602 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 3 C4' C A 1 OK 5 2 4 23 C4' G A 2 OK 25 22 24 46 C4' U A 3 OK 48 45 47 66 C4' U A 4 OK 68 65 67 86 C4' G A 5 OK 88 85 87 109 C4' A A 6 OK 111 108 110 131 C4' C A 7 OK 133 130 132 151 C4' C A 8 OK 153 150 152 171 C4' C A 9 OK 173 170 172 191 C4' A A 10 OK 193 190 192 213 C4' G A 11 OK 215 212 214 236 C4' G A 12 OK 238 235 237 259 C4' A A 13 OK 261 258 260 281 C4' A A 14 OK 283 280 282 303 C4' A A 15 OK 305 302 304 325 C4' C A 16 OK 327 324 326 345 C4' U A 17 OK 347 344 346 365 C4' G A 18 OK 367 364 366 388 C4' G A 19 OK 390 387 389 411 C4' G A 20 OK 413 410 412 434 C4' C A 21 OK 436 433 435 454 C4' G A 22 OK 456 453 455 477 C4' G A 23 OK 479 476 478 500 C4' A A 24 OK 502 499 501 522 C4' A A 25 OK 524 521 523 544 C4' G A 26 OK 546 543 545 567 C4' U A 27 OK 569 566 568 587 C4' A A 28 OK 589 586 588 609 C4' A A 29 OK 611 608 610 631 C4' G A 30 OK 633 630 632 654 C4' G A 31 OK 656 653 655 677 C4' U A 32 OK 679 676 678 697 C4' C A 33 OK 699 696 698 717 C4' C A 34 OK 719 716 718 737 C4' A A 35 OK 739 736 738 759 C4' U A 36 OK 761 758 760 779 C4' U A 37 OK 781 778 780 799 C4' G A 38 OK 801 798 800 822 C4' C A 39 OK 824 821 823 842 C4' A A 40 OK 844 841 843 864 C4' C A 41 OK 866 863 865 884 C4' U A 42 OK 886 883 885 904 C4' C A 43 OK 906 903 905 924 C4' C A 44 OK 926 923 925 944 C4' G A 45 OK 946 943 945 967 C4' G A 46 OK 969 966 968 990 C4' G A 47 OK 992 989 991 1013 C4' C A 48 OK 1015 1012 1014 1033 C4' C A 49 OK 1035 1032 1034 1053 C4' U A 50 OK 1055 1052 1054 1073 C4' G A 51 OK 1075 1072 1074 1096 C4' A A 52 OK 1098 1095 1097 1118 C4' A A 53 OK 1120 1117 1119 1140 C4' G A 54 OK 1142 1139 1141 1163 C4' C A 55 OK 1165 1162 1164 1183 C4' A A 56 OK 1185 1182 1184 1205 C4' A A 57 OK 1207 1204 1206 1227 C4' C A 58 OK 1229 1226 1228 1247 C4' G A 59 OK 1249 1246 1248 1270 C4' C A 60 OK 1272 1269 1271 1290 C4' G A 61 OK 1292 1289 1291 1311 C4' C B 1 OK 1313 1310 1312 1331 C4' G B 2 OK 1333 1330 1332 1354 C4' U B 3 OK 1356 1353 1355 1374 C4' U B 4 OK 1376 1373 1375 1394 C4' G B 5 OK 1396 1393 1395 1417 C4' A B 6 OK 1419 1416 1418 1439 C4' C B 7 OK 1441 1438 1440 1459 C4' C B 8 OK 1461 1458 1460 1479 C4' C B 9 OK 1481 1478 1480 1499 C4' A B 10 OK 1501 1498 1500 1521 C4' G B 11 OK 1523 1520 1522 1544 C4' G B 12 OK 1546 1543 1545 1567 C4' A B 13 OK 1569 1566 1568 1589 C4' A B 14 OK 1591 1588 1590 1611 C4' A B 15 OK 1613 1610 1612 1633 C4' C B 16 OK 1635 1632 1634 1653 C4' U B 17 OK 1655 1652 1654 1673 C4' G B 18 OK 1675 1672 1674 1696 C4' G B 19 OK 1698 1695 1697 1719 C4' G B 20 OK 1721 1718 1720 1742 C4' C B 21 OK 1744 1741 1743 1762 C4' G B 22 OK 1764 1761 1763 1785 C4' G B 23 OK 1787 1784 1786 1808 C4' A B 24 OK 1810 1807 1809 1830 C4' A B 25 OK 1832 1829 1831 1852 C4' G B 26 OK 1854 1851 1853 1875 C4' U B 27 OK 1877 1874 1876 1895 C4' A B 28 OK 1897 1894 1896 1917 C4' A B 29 OK 1919 1916 1918 1939 C4' G B 30 OK 1941 1938 1940 1962 C4' G B 31 OK 1964 1961 1963 1985 C4' U B 32 OK 1987 1984 1986 2005 C4' C B 33 OK 2007 2004 2006 2025 C4' C B 34 OK 2027 2024 2026 2045 C4' A B 35 OK 2047 2044 2046 2067 C4' U B 36 OK 2069 2066 2068 2087 C4' U B 37 OK 2089 2086 2088 2107 C4' G B 38 OK 2109 2106 2108 2130 C4' C B 39 OK 2132 2129 2131 2150 C4' A B 40 OK 2152 2149 2151 2172 C4' C B 41 OK 2174 2171 2173 2192 C4' U B 42 OK 2194 2191 2193 2212 C4' C B 43 OK 2214 2211 2213 2232 C4' C B 44 OK 2234 2231 2233 2252 C4' G B 45 OK 2254 2251 2253 2275 C4' G B 46 OK 2277 2274 2276 2298 C4' G B 47 OK 2300 2297 2299 2321 C4' C B 48 OK 2323 2320 2322 2341 C4' C B 49 OK 2343 2340 2342 2361 C4' U B 50 OK 2363 2360 2362 2381 C4' G B 51 OK 2383 2380 2382 2404 C4' A B 52 OK 2406 2403 2405 2426 C4' A B 53 OK 2428 2425 2427 2448 C4' G B 54 OK 2450 2447 2449 2471 C4' C B 55 OK 2473 2470 2472 2491 C4' A B 56 OK 2493 2490 2492 2513 C4' A B 57 OK 2515 2512 2514 2535 C4' C B 58 OK 2537 2534 2536 2555 C4' G B 59 OK 2557 2554 2556 2578 C4' C B 60 OK 2580 2577 2579 2598 C4' G B 61 OK 2600 2597 2599 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 2 C5' C A 1 1 3 22 C5' G A 2 21 23 45 C5' U A 3 44 46 65 C5' U A 4 64 66 85 C5' G A 5 84 86 108 C5' A A 6 107 109 130 C5' C A 7 129 131 150 C5' C A 8 149 151 170 C5' C A 9 169 171 190 C5' A A 10 189 191 212 C5' G A 11 211 213 235 C5' G A 12 234 236 258 C5' A A 13 257 259 280 C5' A A 14 279 281 302 C5' A A 15 301 303 324 C5' C A 16 323 325 344 C5' U A 17 343 345 364 C5' G A 18 363 365 387 C5' G A 19 386 388 410 C5' G A 20 409 411 433 C5' C A 21 432 434 453 C5' G A 22 452 454 476 C5' G A 23 475 477 499 C5' A A 24 498 500 521 C5' A A 25 520 522 543 C5' G A 26 542 544 566 C5' U A 27 565 567 586 C5' A A 28 585 587 608 C5' A A 29 607 609 630 C5' G A 30 629 631 653 C5' G A 31 652 654 676 C5' U A 32 675 677 696 C5' C A 33 695 697 716 C5' C A 34 715 717 736 C5' A A 35 735 737 758 C5' U A 36 757 759 778 C5' U A 37 777 779 798 C5' G A 38 797 799 821 C5' C A 39 820 822 841 C5' A A 40 840 842 863 C5' C A 41 862 864 883 C5' U A 42 882 884 903 C5' C A 43 902 904 923 C5' C A 44 922 924 943 C5' G A 45 942 944 966 C5' G A 46 965 967 989 C5' G A 47 988 990 1012 C5' C A 48 1011 1013 1032 C5' C A 49 1031 1033 1052 C5' U A 50 1051 1053 1072 C5' G A 51 1071 1073 1095 C5' A A 52 1094 1096 1117 C5' A A 53 1116 1118 1139 C5' G A 54 1138 1140 1162 C5' C A 55 1161 1163 1182 C5' A A 56 1181 1183 1204 C5' A A 57 1203 1205 1226 C5' C A 58 1225 1227 1246 C5' G A 59 1245 1247 1269 C5' C A 60 1268 1270 1289 C5' G A 61 1288 1290 1310 C5' C B 1 1309 1311 1330 C5' G B 2 1329 1331 1353 C5' U B 3 1352 1354 1373 C5' U B 4 1372 1374 1393 C5' G B 5 1392 1394 1416 C5' A B 6 1415 1417 1438 C5' C B 7 1437 1439 1458 C5' C B 8 1457 1459 1478 C5' C B 9 1477 1479 1498 C5' A B 10 1497 1499 1520 C5' G B 11 1519 1521 1543 C5' G B 12 1542 1544 1566 C5' A B 13 1565 1567 1588 C5' A B 14 1587 1589 1610 C5' A B 15 1609 1611 1632 C5' C B 16 1631 1633 1652 C5' U B 17 1651 1653 1672 C5' G B 18 1671 1673 1695 C5' G B 19 1694 1696 1718 C5' G B 20 1717 1719 1741 C5' C B 21 1740 1742 1761 C5' G B 22 1760 1762 1784 C5' G B 23 1783 1785 1807 C5' A B 24 1806 1808 1829 C5' A B 25 1828 1830 1851 C5' G B 26 1850 1852 1874 C5' U B 27 1873 1875 1894 C5' A B 28 1893 1895 1916 C5' A B 29 1915 1917 1938 C5' G B 30 1937 1939 1961 C5' G B 31 1960 1962 1984 C5' U B 32 1983 1985 2004 C5' C B 33 2003 2005 2024 C5' C B 34 2023 2025 2044 C5' A B 35 2043 2045 2066 C5' U B 36 2065 2067 2086 C5' U B 37 2085 2087 2106 C5' G B 38 2105 2107 2129 C5' C B 39 2128 2130 2149 C5' A B 40 2148 2150 2171 C5' C B 41 2170 2172 2191 C5' U B 42 2190 2192 2211 C5' C B 43 2210 2212 2231 C5' C B 44 2230 2232 2251 C5' G B 45 2250 2252 2274 C5' G B 46 2273 2275 2297 C5' G B 47 2296 2298 2320 C5' C B 48 2319 2321 2340 C5' C B 49 2339 2341 2360 C5' U B 50 2359 2361 2380 C5' G B 51 2379 2381 2403 C5' A B 52 2402 2404 2425 C5' A B 53 2424 2426 2447 C5' G B 54 2446 2448 2470 C5' C B 55 2469 2471 2490 C5' A B 56 2489 2491 2512 C5' A B 57 2511 2513 2534 C5' C B 58 2533 2535 2554 C5' G B 59 2553 2555 2577 C5' C B 60 2576 2578 2597 C5' G B 61 2596 2598 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 18 P G A 2 distorted distorted 6 19 20 21 41 P U A 3 distorted distorted 26 42 43 44 61 P U A 4 distorted distorted 49 62 63 64 81 P G A 5 distorted distorted 69 82 83 84 104 P A A 6 distorted distorted 89 105 106 107 126 P C A 7 distorted distorted 112 127 128 129 146 P C A 8 distorted distorted 134 147 148 149 166 P C A 9 distorted distorted 154 167 168 169 186 P A A 10 distorted distorted 174 187 188 189 208 P G A 11 distorted distorted 194 209 210 211 231 P G A 12 distorted distorted 216 232 233 234 254 P A A 13 distorted distorted 239 255 256 257 276 P A A 14 distorted distorted 262 277 278 279 298 P A A 15 distorted distorted 284 299 300 301 320 P C A 16 distorted distorted 306 321 322 323 340 P U A 17 distorted distorted 328 341 342 343 360 P G A 18 distorted distorted 348 361 362 363 383 P G A 19 distorted distorted 368 384 385 386 406 P G A 20 distorted distorted 391 407 408 409 429 P C A 21 distorted distorted 414 430 431 432 449 P G A 22 distorted distorted 437 450 451 452 472 P G A 23 distorted distorted 457 473 474 475 495 P A A 24 distorted distorted 480 496 497 498 517 P A A 25 distorted distorted 503 518 519 520 539 P G A 26 distorted distorted 525 540 541 542 562 P U A 27 distorted distorted 547 563 564 565 582 P A A 28 distorted distorted 570 583 584 585 604 P A A 29 distorted distorted 590 605 606 607 626 P G A 30 distorted distorted 612 627 628 629 649 P G A 31 distorted distorted 634 650 651 652 672 P U A 32 distorted distorted 657 673 674 675 692 P C A 33 distorted distorted 680 693 694 695 712 P C A 34 distorted distorted 700 713 714 715 732 P A A 35 distorted distorted 720 733 734 735 754 P U A 36 distorted distorted 740 755 756 757 774 P U A 37 distorted distorted 762 775 776 777 794 P G A 38 distorted distorted 782 795 796 797 817 P C A 39 distorted distorted 802 818 819 820 837 P A A 40 distorted distorted 825 838 839 840 859 P C A 41 distorted distorted 845 860 861 862 879 P U A 42 distorted distorted 867 880 881 882 899 P C A 43 distorted distorted 887 900 901 902 919 P C A 44 distorted distorted 907 920 921 922 939 P G A 45 distorted distorted 927 940 941 942 962 P G A 46 distorted distorted 947 963 964 965 985 P G A 47 distorted distorted 970 986 987 988 1008 P C A 48 distorted distorted 993 1009 1010 1011 1028 P C A 49 distorted distorted 1016 1029 1030 1031 1048 P U A 50 distorted distorted 1036 1049 1050 1051 1068 P G A 51 distorted distorted 1056 1069 1070 1071 1091 P A A 52 distorted distorted 1076 1092 1093 1094 1113 P A A 53 distorted distorted 1099 1114 1115 1116 1135 P G A 54 distorted distorted 1121 1136 1137 1138 1158 P C A 55 distorted distorted 1143 1159 1160 1161 1178 P A A 56 distorted distorted 1166 1179 1180 1181 1200 P A A 57 distorted distorted 1186 1201 1202 1203 1222 P C A 58 distorted distorted 1208 1223 1224 1225 1242 P G A 59 distorted distorted 1230 1243 1244 1245 1265 P C A 60 distorted distorted 1250 1266 1267 1268 1285 P G A 61 distorted distorted 1273 1286 1287 1288 1326 P G B 2 distorted distorted 1314 1327 1328 1329 1349 P U B 3 distorted distorted 1334 1350 1351 1352 1369 P U B 4 distorted distorted 1357 1370 1371 1372 1389 P G B 5 distorted distorted 1377 1390 1391 1392 1412 P A B 6 distorted distorted 1397 1413 1414 1415 1434 P C B 7 distorted distorted 1420 1435 1436 1437 1454 P C B 8 distorted distorted 1442 1455 1456 1457 1474 P C B 9 distorted distorted 1462 1475 1476 1477 1494 P A B 10 distorted distorted 1482 1495 1496 1497 1516 P G B 11 distorted distorted 1502 1517 1518 1519 1539 P G B 12 distorted distorted 1524 1540 1541 1542 1562 P A B 13 distorted distorted 1547 1563 1564 1565 1584 P A B 14 distorted distorted 1570 1585 1586 1587 1606 P A B 15 distorted distorted 1592 1607 1608 1609 1628 P C B 16 distorted distorted 1614 1629 1630 1631 1648 P U B 17 distorted distorted 1636 1649 1650 1651 1668 P G B 18 distorted distorted 1656 1669 1670 1671 1691 P G B 19 distorted distorted 1676 1692 1693 1694 1714 P G B 20 distorted distorted 1699 1715 1716 1717 1737 P C B 21 distorted distorted 1722 1738 1739 1740 1757 P G B 22 distorted distorted 1745 1758 1759 1760 1780 P G B 23 distorted distorted 1765 1781 1782 1783 1803 P A B 24 distorted distorted 1788 1804 1805 1806 1825 P A B 25 distorted distorted 1811 1826 1827 1828 1847 P G B 26 distorted distorted 1833 1848 1849 1850 1870 P U B 27 distorted distorted 1855 1871 1872 1873 1890 P A B 28 distorted distorted 1878 1891 1892 1893 1912 P A B 29 distorted distorted 1898 1913 1914 1915 1934 P G B 30 distorted distorted 1920 1935 1936 1937 1957 P G B 31 distorted distorted 1942 1958 1959 1960 1980 P U B 32 distorted distorted 1965 1981 1982 1983 2000 P C B 33 distorted distorted 1988 2001 2002 2003 2020 P C B 34 distorted distorted 2008 2021 2022 2023 2040 P A B 35 distorted distorted 2028 2041 2042 2043 2062 P U B 36 distorted distorted 2048 2063 2064 2065 2082 P U B 37 distorted distorted 2070 2083 2084 2085 2102 P G B 38 distorted distorted 2090 2103 2104 2105 2125 P C B 39 distorted distorted 2110 2126 2127 2128 2145 P A B 40 distorted distorted 2133 2146 2147 2148 2167 P C B 41 distorted distorted 2153 2168 2169 2170 2187 P U B 42 distorted distorted 2175 2188 2189 2190 2207 P C B 43 distorted distorted 2195 2208 2209 2210 2227 P C B 44 distorted distorted 2215 2228 2229 2230 2247 P G B 45 distorted distorted 2235 2248 2249 2250 2270 P G B 46 distorted distorted 2255 2271 2272 2273 2293 P G B 47 distorted distorted 2278 2294 2295 2296 2316 P C B 48 distorted distorted 2301 2317 2318 2319 2336 P C B 49 distorted distorted 2324 2337 2338 2339 2356 P U B 50 distorted distorted 2344 2357 2358 2359 2376 P G B 51 distorted distorted 2364 2377 2378 2379 2399 P A B 52 distorted distorted 2384 2400 2401 2402 2421 P A B 53 distorted distorted 2407 2422 2423 2424 2443 P G B 54 distorted distorted 2429 2444 2445 2446 2466 P C B 55 distorted distorted 2451 2467 2468 2469 2486 P A B 56 distorted distorted 2474 2487 2488 2489 2508 P A B 57 distorted distorted 2494 2509 2510 2511 2530 P C B 58 distorted distorted 2516 2531 2532 2533 2550 P G B 59 distorted distorted 2538 2551 2552 2553 2573 P C B 60 distorted distorted 2558 2574 2575 2576 2593 P G B 61 distorted distorted 2581 2594 2595 2596 ---------------------------------------------------------------------------------