ID code: '5DDO' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 12 C1' C A 1 beta 7 13 10 32 C1' G A 2 beta 27 33 30 55 C1' U A 3 beta 50 56 53 75 C1' U A 4 beta 70 76 73 95 C1' G A 5 beta 90 96 93 118 C1' G A 6 beta 113 119 116 141 C1' C A 7 beta 136 142 139 161 C1' C A 8 beta 156 162 159 181 C1' C A 9 beta 176 182 179 201 C1' A A 10 beta 196 202 199 223 C1' G A 11 beta 218 224 221 246 C1' G A 12 beta 241 247 244 269 C1' A A 13 beta 264 270 267 291 C1' A A 14 beta 286 292 289 313 C1' A A 15 beta 308 314 311 335 C1' C A 16 beta 330 336 333 355 C1' U A 17 beta 350 356 353 375 C1' G A 18 beta 370 376 373 398 C1' G A 19 beta 393 399 396 421 C1' G A 20 beta 416 422 419 444 C1' U A 21 beta 439 445 442 464 C1' A A 25 beta 459 465 462 486 C1' G A 26 beta 481 487 484 509 C1' U A 27 beta 504 510 507 529 C1' A A 28 beta 524 530 527 551 C1' A A 29 beta 546 552 549 573 C1' G A 30 beta 568 574 571 596 C1' G A 31 beta 591 597 594 619 C1' U A 32 beta 614 620 617 639 C1' C A 33 beta 634 640 637 659 C1' C A 34 beta 654 660 657 679 C1' A A 35 beta 674 680 677 701 C1' U A 36 beta 696 702 699 721 C1' U A 37 beta 716 722 719 741 C1' G A 38 beta 736 742 739 764 C1' C A 39 beta 759 765 762 784 C1' A A 40 beta 779 785 782 806 C1' C A 41 beta 801 807 804 826 C1' U A 42 beta 821 827 824 846 C1' C A 43 beta 841 847 844 866 C1' C A 44 beta 861 867 864 886 C1' G A 45 beta 881 887 884 909 C1' G A 46 beta 904 910 907 932 C1' G A 47 beta 927 933 930 955 C1' C A 48 beta 950 956 953 975 C1' C A 49 beta 970 976 973 995 C1' U A 50 beta 990 996 993 1015 C1' G A 51 beta 1010 1016 1013 1038 C1' A A 52 beta 1033 1039 1036 1060 C1' A A 53 beta 1055 1061 1058 1082 C1' G A 54 beta 1077 1083 1080 1105 C1' C A 55 beta 1100 1106 1103 1125 C1' A A 56 beta 1120 1126 1123 1147 C1' A A 57 beta 1142 1148 1145 1169 C1' C A 58 beta 1164 1170 1167 1189 C1' G A 59 beta 1184 1190 1187 1212 C1' C A 60 beta 1207 1213 1210 1232 C1' U A 61 beta 1227 1233 1230 1907 C1' C B 1 beta 1902 1908 1905 1927 C1' G B 2 beta 1922 1928 1925 1950 C1' U B 3 beta 1945 1951 1948 1970 C1' U B 4 beta 1965 1971 1968 1990 C1' G B 5 beta 1985 1991 1988 2013 C1' G B 6 beta 2008 2014 2011 2036 C1' C B 7 beta 2031 2037 2034 2056 C1' C B 8 beta 2051 2057 2054 2076 C1' C B 9 beta 2071 2077 2074 2096 C1' A B 10 beta 2091 2097 2094 2118 C1' G B 11 beta 2113 2119 2116 2141 C1' G B 12 beta 2136 2142 2139 2164 C1' A B 13 beta 2159 2165 2162 2186 C1' A B 14 beta 2181 2187 2184 2208 C1' A B 15 beta 2203 2209 2206 2230 C1' C B 16 beta 2225 2231 2228 2250 C1' U B 17 beta 2245 2251 2248 2270 C1' G B 18 beta 2265 2271 2268 2293 C1' G B 19 beta 2288 2294 2291 2316 C1' G B 20 beta 2311 2317 2314 2339 C1' U B 21 beta 2334 2340 2337 2359 C1' A B 25 beta 2354 2360 2357 2381 C1' G B 26 beta 2376 2382 2379 2404 C1' U B 27 beta 2399 2405 2402 2424 C1' A B 28 beta 2419 2425 2422 2446 C1' A B 29 beta 2441 2447 2444 2468 C1' G B 30 beta 2463 2469 2466 2491 C1' G B 31 beta 2486 2492 2489 2514 C1' U B 32 beta 2509 2515 2512 2534 C1' C B 33 beta 2529 2535 2532 2554 C1' C B 34 beta 2549 2555 2552 2574 C1' A B 35 beta 2569 2575 2572 2596 C1' U B 36 beta 2591 2597 2594 2616 C1' U B 37 beta 2611 2617 2614 2636 C1' G B 38 beta 2631 2637 2634 2659 C1' C B 39 beta 2654 2660 2657 2679 C1' A B 40 beta 2674 2680 2677 2701 C1' C B 41 beta 2696 2702 2699 2721 C1' U B 42 beta 2716 2722 2719 2741 C1' C B 43 beta 2736 2742 2739 2761 C1' C B 44 beta 2756 2762 2759 2781 C1' G B 45 beta 2776 2782 2779 2804 C1' G B 46 beta 2799 2805 2802 2827 C1' G B 47 beta 2822 2828 2825 2850 C1' C B 48 beta 2845 2851 2848 2870 C1' C B 49 beta 2865 2871 2868 2890 C1' U B 50 beta 2885 2891 2888 2910 C1' G B 51 beta 2905 2911 2908 2933 C1' A B 52 beta 2928 2934 2931 2955 C1' A B 53 beta 2950 2956 2953 2977 C1' G B 54 beta 2972 2978 2975 3000 C1' C B 55 beta 2995 3001 2998 3020 C1' A B 56 beta 3015 3021 3018 3042 C1' A B 57 beta 3037 3043 3040 3064 C1' C B 58 beta 3059 3065 3062 3084 C1' G B 59 beta 3079 3085 3082 3107 C1' C B 60 beta 3102 3108 3105 3127 C1' U B 61 beta 3122 3128 3125 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 10 C2' C A 1 OK 12 8 11 30 C2' G A 2 OK 32 28 31 53 C2' U A 3 OK 55 51 54 73 C2' U A 4 OK 75 71 74 93 C2' G A 5 OK 95 91 94 116 C2' G A 6 OK 118 114 117 139 C2' C A 7 OK 141 137 140 159 C2' C A 8 OK 161 157 160 179 C2' C A 9 OK 181 177 180 199 C2' A A 10 OK 201 197 200 221 C2' G A 11 OK 223 219 222 244 C2' G A 12 OK 246 242 245 267 C2' A A 13 OK 269 265 268 289 C2' A A 14 OK 291 287 290 311 C2' A A 15 OK 313 309 312 333 C2' C A 16 OK 335 331 334 353 C2' U A 17 OK 355 351 354 373 C2' G A 18 OK 375 371 374 396 C2' G A 19 OK 398 394 397 419 C2' G A 20 OK 421 417 420 442 C2' U A 21 OK 444 440 443 462 C2' A A 25 OK 464 460 463 484 C2' G A 26 OK 486 482 485 507 C2' U A 27 OK 509 505 508 527 C2' A A 28 OK 529 525 528 549 C2' A A 29 OK 551 547 550 571 C2' G A 30 OK 573 569 572 594 C2' G A 31 OK 596 592 595 617 C2' U A 32 OK 619 615 618 637 C2' C A 33 OK 639 635 638 657 C2' C A 34 OK 659 655 658 677 C2' A A 35 OK 679 675 678 699 C2' U A 36 OK 701 697 700 719 C2' U A 37 OK 721 717 720 739 C2' G A 38 OK 741 737 740 762 C2' C A 39 OK 764 760 763 782 C2' A A 40 OK 784 780 783 804 C2' C A 41 OK 806 802 805 824 C2' U A 42 OK 826 822 825 844 C2' C A 43 OK 846 842 845 864 C2' C A 44 OK 866 862 865 884 C2' G A 45 OK 886 882 885 907 C2' G A 46 OK 909 905 908 930 C2' G A 47 OK 932 928 931 953 C2' C A 48 OK 955 951 954 973 C2' C A 49 OK 975 971 974 993 C2' U A 50 OK 995 991 994 1013 C2' G A 51 OK 1015 1011 1014 1036 C2' A A 52 OK 1038 1034 1037 1058 C2' A A 53 OK 1060 1056 1059 1080 C2' G A 54 OK 1082 1078 1081 1103 C2' C A 55 OK 1105 1101 1104 1123 C2' A A 56 OK 1125 1121 1124 1145 C2' A A 57 OK 1147 1143 1146 1167 C2' C A 58 OK 1169 1165 1168 1187 C2' G A 59 OK 1189 1185 1188 1210 C2' C A 60 OK 1212 1208 1211 1230 C2' U A 61 OK 1232 1228 1231 1905 C2' C B 1 OK 1907 1903 1906 1925 C2' G B 2 OK 1927 1923 1926 1948 C2' U B 3 OK 1950 1946 1949 1968 C2' U B 4 OK 1970 1966 1969 1988 C2' G B 5 OK 1990 1986 1989 2011 C2' G B 6 OK 2013 2009 2012 2034 C2' C B 7 OK 2036 2032 2035 2054 C2' C B 8 OK 2056 2052 2055 2074 C2' C B 9 OK 2076 2072 2075 2094 C2' A B 10 OK 2096 2092 2095 2116 C2' G B 11 OK 2118 2114 2117 2139 C2' G B 12 OK 2141 2137 2140 2162 C2' A B 13 OK 2164 2160 2163 2184 C2' A B 14 OK 2186 2182 2185 2206 C2' A B 15 OK 2208 2204 2207 2228 C2' C B 16 OK 2230 2226 2229 2248 C2' U B 17 OK 2250 2246 2249 2268 C2' G B 18 OK 2270 2266 2269 2291 C2' G B 19 OK 2293 2289 2292 2314 C2' G B 20 OK 2316 2312 2315 2337 C2' U B 21 OK 2339 2335 2338 2357 C2' A B 25 OK 2359 2355 2358 2379 C2' G B 26 OK 2381 2377 2380 2402 C2' U B 27 OK 2404 2400 2403 2422 C2' A B 28 OK 2424 2420 2423 2444 C2' A B 29 OK 2446 2442 2445 2466 C2' G B 30 OK 2468 2464 2467 2489 C2' G B 31 OK 2491 2487 2490 2512 C2' U B 32 OK 2514 2510 2513 2532 C2' C B 33 OK 2534 2530 2533 2552 C2' C B 34 OK 2554 2550 2553 2572 C2' A B 35 OK 2574 2570 2573 2594 C2' U B 36 OK 2596 2592 2595 2614 C2' U B 37 OK 2616 2612 2615 2634 C2' G B 38 OK 2636 2632 2635 2657 C2' C B 39 OK 2659 2655 2658 2677 C2' A B 40 OK 2679 2675 2678 2699 C2' C B 41 OK 2701 2697 2700 2719 C2' U B 42 OK 2721 2717 2720 2739 C2' C B 43 OK 2741 2737 2740 2759 C2' C B 44 OK 2761 2757 2760 2779 C2' G B 45 OK 2781 2777 2780 2802 C2' G B 46 OK 2804 2800 2803 2825 C2' G B 47 OK 2827 2823 2826 2848 C2' C B 48 OK 2850 2846 2849 2868 C2' C B 49 OK 2870 2866 2869 2888 C2' U B 50 OK 2890 2886 2889 2908 C2' G B 51 OK 2910 2906 2909 2931 C2' A B 52 OK 2933 2929 2932 2953 C2' A B 53 OK 2955 2951 2954 2975 C2' G B 54 OK 2977 2973 2976 2998 C2' C B 55 OK 3000 2996 2999 3018 C2' A B 56 OK 3020 3016 3019 3040 C2' A B 57 OK 3042 3038 3041 3062 C2' C B 58 OK 3064 3060 3063 3082 C2' G B 59 OK 3084 3080 3083 3105 C2' C B 60 OK 3107 3103 3106 3125 C2' U B 61 OK 3127 3123 3126 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 8 C3' C A 1 OK 6 9 10 28 C3' G A 2 OK 26 29 30 51 C3' U A 3 OK 49 52 53 71 C3' U A 4 OK 69 72 73 91 C3' G A 5 OK 89 92 93 114 C3' G A 6 OK 112 115 116 137 C3' C A 7 OK 135 138 139 157 C3' C A 8 OK 155 158 159 177 C3' C A 9 OK 175 178 179 197 C3' A A 10 OK 195 198 199 219 C3' G A 11 OK 217 220 221 242 C3' G A 12 OK 240 243 244 265 C3' A A 13 OK 263 266 267 287 C3' A A 14 OK 285 288 289 309 C3' A A 15 OK 307 310 311 331 C3' C A 16 OK 329 332 333 351 C3' U A 17 OK 349 352 353 371 C3' G A 18 OK 369 372 373 394 C3' G A 19 OK 392 395 396 417 C3' G A 20 OK 415 418 419 440 C3' U A 21 OK 438 441 442 460 C3' A A 25 OK 458 461 462 482 C3' G A 26 OK 480 483 484 505 C3' U A 27 OK 503 506 507 525 C3' A A 28 OK 523 526 527 547 C3' A A 29 OK 545 548 549 569 C3' G A 30 OK 567 570 571 592 C3' G A 31 OK 590 593 594 615 C3' U A 32 OK 613 616 617 635 C3' C A 33 OK 633 636 637 655 C3' C A 34 OK 653 656 657 675 C3' A A 35 OK 673 676 677 697 C3' U A 36 OK 695 698 699 717 C3' U A 37 OK 715 718 719 737 C3' G A 38 OK 735 738 739 760 C3' C A 39 OK 758 761 762 780 C3' A A 40 OK 778 781 782 802 C3' C A 41 OK 800 803 804 822 C3' U A 42 OK 820 823 824 842 C3' C A 43 OK 840 843 844 862 C3' C A 44 OK 860 863 864 882 C3' G A 45 OK 880 883 884 905 C3' G A 46 OK 903 906 907 928 C3' G A 47 OK 926 929 930 951 C3' C A 48 OK 949 952 953 971 C3' C A 49 OK 969 972 973 991 C3' U A 50 OK 989 992 993 1011 C3' G A 51 OK 1009 1012 1013 1034 C3' A A 52 OK 1032 1035 1036 1056 C3' A A 53 OK 1054 1057 1058 1078 C3' G A 54 OK 1076 1079 1080 1101 C3' C A 55 OK 1099 1102 1103 1121 C3' A A 56 OK 1119 1122 1123 1143 C3' A A 57 OK 1141 1144 1145 1165 C3' C A 58 OK 1163 1166 1167 1185 C3' G A 59 OK 1183 1186 1187 1208 C3' C A 60 OK 1206 1209 1210 1228 C3' U A 61 OK 1226 1229 1230 1903 C3' C B 1 OK 1901 1904 1905 1923 C3' G B 2 OK 1921 1924 1925 1946 C3' U B 3 OK 1944 1947 1948 1966 C3' U B 4 OK 1964 1967 1968 1986 C3' G B 5 OK 1984 1987 1988 2009 C3' G B 6 OK 2007 2010 2011 2032 C3' C B 7 OK 2030 2033 2034 2052 C3' C B 8 OK 2050 2053 2054 2072 C3' C B 9 OK 2070 2073 2074 2092 C3' A B 10 OK 2090 2093 2094 2114 C3' G B 11 OK 2112 2115 2116 2137 C3' G B 12 OK 2135 2138 2139 2160 C3' A B 13 OK 2158 2161 2162 2182 C3' A B 14 OK 2180 2183 2184 2204 C3' A B 15 OK 2202 2205 2206 2226 C3' C B 16 OK 2224 2227 2228 2246 C3' U B 17 OK 2244 2247 2248 2266 C3' G B 18 OK 2264 2267 2268 2289 C3' G B 19 OK 2287 2290 2291 2312 C3' G B 20 OK 2310 2313 2314 2335 C3' U B 21 OK 2333 2336 2337 2355 C3' A B 25 OK 2353 2356 2357 2377 C3' G B 26 OK 2375 2378 2379 2400 C3' U B 27 OK 2398 2401 2402 2420 C3' A B 28 OK 2418 2421 2422 2442 C3' A B 29 OK 2440 2443 2444 2464 C3' G B 30 OK 2462 2465 2466 2487 C3' G B 31 OK 2485 2488 2489 2510 C3' U B 32 OK 2508 2511 2512 2530 C3' C B 33 OK 2528 2531 2532 2550 C3' C B 34 OK 2548 2551 2552 2570 C3' A B 35 OK 2568 2571 2572 2592 C3' U B 36 OK 2590 2593 2594 2612 C3' U B 37 OK 2610 2613 2614 2632 C3' G B 38 OK 2630 2633 2634 2655 C3' C B 39 OK 2653 2656 2657 2675 C3' A B 40 OK 2673 2676 2677 2697 C3' C B 41 OK 2695 2698 2699 2717 C3' U B 42 OK 2715 2718 2719 2737 C3' C B 43 OK 2735 2738 2739 2757 C3' C B 44 OK 2755 2758 2759 2777 C3' G B 45 OK 2775 2778 2779 2800 C3' G B 46 OK 2798 2801 2802 2823 C3' G B 47 OK 2821 2824 2825 2846 C3' C B 48 OK 2844 2847 2848 2866 C3' C B 49 OK 2864 2867 2868 2886 C3' U B 50 OK 2884 2887 2888 2906 C3' G B 51 OK 2904 2907 2908 2929 C3' A B 52 OK 2927 2930 2931 2951 C3' A B 53 OK 2949 2952 2953 2973 C3' G B 54 OK 2971 2974 2975 2996 C3' C B 55 OK 2994 2997 2998 3016 C3' A B 56 OK 3014 3017 3018 3038 C3' A B 57 OK 3036 3039 3040 3060 C3' C B 58 OK 3058 3061 3062 3080 C3' G B 59 OK 3078 3081 3082 3103 C3' C B 60 OK 3101 3104 3105 3123 C3' U B 61 OK 3121 3124 3125 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 6 C4' C A 1 OK 8 5 7 26 C4' G A 2 OK 28 25 27 49 C4' U A 3 OK 51 48 50 69 C4' U A 4 OK 71 68 70 89 C4' G A 5 OK 91 88 90 112 C4' G A 6 OK 114 111 113 135 C4' C A 7 OK 137 134 136 155 C4' C A 8 OK 157 154 156 175 C4' C A 9 OK 177 174 176 195 C4' A A 10 OK 197 194 196 217 C4' G A 11 OK 219 216 218 240 C4' G A 12 OK 242 239 241 263 C4' A A 13 OK 265 262 264 285 C4' A A 14 OK 287 284 286 307 C4' A A 15 OK 309 306 308 329 C4' C A 16 OK 331 328 330 349 C4' U A 17 OK 351 348 350 369 C4' G A 18 OK 371 368 370 392 C4' G A 19 OK 394 391 393 415 C4' G A 20 OK 417 414 416 438 C4' U A 21 OK 440 437 439 458 C4' A A 25 OK 460 457 459 480 C4' G A 26 OK 482 479 481 503 C4' U A 27 OK 505 502 504 523 C4' A A 28 OK 525 522 524 545 C4' A A 29 OK 547 544 546 567 C4' G A 30 OK 569 566 568 590 C4' G A 31 OK 592 589 591 613 C4' U A 32 OK 615 612 614 633 C4' C A 33 OK 635 632 634 653 C4' C A 34 OK 655 652 654 673 C4' A A 35 OK 675 672 674 695 C4' U A 36 OK 697 694 696 715 C4' U A 37 OK 717 714 716 735 C4' G A 38 OK 737 734 736 758 C4' C A 39 OK 760 757 759 778 C4' A A 40 OK 780 777 779 800 C4' C A 41 OK 802 799 801 820 C4' U A 42 OK 822 819 821 840 C4' C A 43 OK 842 839 841 860 C4' C A 44 OK 862 859 861 880 C4' G A 45 OK 882 879 881 903 C4' G A 46 OK 905 902 904 926 C4' G A 47 OK 928 925 927 949 C4' C A 48 OK 951 948 950 969 C4' C A 49 OK 971 968 970 989 C4' U A 50 OK 991 988 990 1009 C4' G A 51 OK 1011 1008 1010 1032 C4' A A 52 OK 1034 1031 1033 1054 C4' A A 53 OK 1056 1053 1055 1076 C4' G A 54 OK 1078 1075 1077 1099 C4' C A 55 OK 1101 1098 1100 1119 C4' A A 56 OK 1121 1118 1120 1141 C4' A A 57 OK 1143 1140 1142 1163 C4' C A 58 OK 1165 1162 1164 1183 C4' G A 59 OK 1185 1182 1184 1206 C4' C A 60 OK 1208 1205 1207 1226 C4' U A 61 OK 1228 1225 1227 1901 C4' C B 1 OK 1903 1900 1902 1921 C4' G B 2 OK 1923 1920 1922 1944 C4' U B 3 OK 1946 1943 1945 1964 C4' U B 4 OK 1966 1963 1965 1984 C4' G B 5 OK 1986 1983 1985 2007 C4' G B 6 OK 2009 2006 2008 2030 C4' C B 7 OK 2032 2029 2031 2050 C4' C B 8 OK 2052 2049 2051 2070 C4' C B 9 OK 2072 2069 2071 2090 C4' A B 10 OK 2092 2089 2091 2112 C4' G B 11 OK 2114 2111 2113 2135 C4' G B 12 OK 2137 2134 2136 2158 C4' A B 13 OK 2160 2157 2159 2180 C4' A B 14 OK 2182 2179 2181 2202 C4' A B 15 OK 2204 2201 2203 2224 C4' C B 16 OK 2226 2223 2225 2244 C4' U B 17 OK 2246 2243 2245 2264 C4' G B 18 OK 2266 2263 2265 2287 C4' G B 19 OK 2289 2286 2288 2310 C4' G B 20 OK 2312 2309 2311 2333 C4' U B 21 OK 2335 2332 2334 2353 C4' A B 25 OK 2355 2352 2354 2375 C4' G B 26 OK 2377 2374 2376 2398 C4' U B 27 OK 2400 2397 2399 2418 C4' A B 28 OK 2420 2417 2419 2440 C4' A B 29 OK 2442 2439 2441 2462 C4' G B 30 OK 2464 2461 2463 2485 C4' G B 31 OK 2487 2484 2486 2508 C4' U B 32 OK 2510 2507 2509 2528 C4' C B 33 OK 2530 2527 2529 2548 C4' C B 34 OK 2550 2547 2549 2568 C4' A B 35 OK 2570 2567 2569 2590 C4' U B 36 OK 2592 2589 2591 2610 C4' U B 37 OK 2612 2609 2611 2630 C4' G B 38 OK 2632 2629 2631 2653 C4' C B 39 OK 2655 2652 2654 2673 C4' A B 40 OK 2675 2672 2674 2695 C4' C B 41 OK 2697 2694 2696 2715 C4' U B 42 OK 2717 2714 2716 2735 C4' C B 43 OK 2737 2734 2736 2755 C4' C B 44 OK 2757 2754 2756 2775 C4' G B 45 OK 2777 2774 2776 2798 C4' G B 46 OK 2800 2797 2799 2821 C4' G B 47 OK 2823 2820 2822 2844 C4' C B 48 OK 2846 2843 2845 2864 C4' C B 49 OK 2866 2863 2865 2884 C4' U B 50 OK 2886 2883 2885 2904 C4' G B 51 OK 2906 2903 2905 2927 C4' A B 52 OK 2929 2926 2928 2949 C4' A B 53 OK 2951 2948 2950 2971 C4' G B 54 OK 2973 2970 2972 2994 C4' C B 55 OK 2996 2993 2995 3014 C4' A B 56 OK 3016 3013 3015 3036 C4' A B 57 OK 3038 3035 3037 3058 C4' C B 58 OK 3060 3057 3059 3078 C4' G B 59 OK 3080 3077 3079 3101 C4' C B 60 OK 3103 3100 3102 3121 C4' U B 61 OK 3123 3120 3122 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 5 C5' C A 1 4 6 25 C5' G A 2 24 26 48 C5' U A 3 47 49 68 C5' U A 4 67 69 88 C5' G A 5 87 89 111 C5' G A 6 110 112 134 C5' C A 7 133 135 154 C5' C A 8 153 155 174 C5' C A 9 173 175 194 C5' A A 10 193 195 216 C5' G A 11 215 217 239 C5' G A 12 238 240 262 C5' A A 13 261 263 284 C5' A A 14 283 285 306 C5' A A 15 305 307 328 C5' C A 16 327 329 348 C5' U A 17 347 349 368 C5' G A 18 367 369 391 C5' G A 19 390 392 414 C5' G A 20 413 415 437 C5' U A 21 436 438 457 C5' A A 25 456 458 479 C5' G A 26 478 480 502 C5' U A 27 501 503 522 C5' A A 28 521 523 544 C5' A A 29 543 545 566 C5' G A 30 565 567 589 C5' G A 31 588 590 612 C5' U A 32 611 613 632 C5' C A 33 631 633 652 C5' C A 34 651 653 672 C5' A A 35 671 673 694 C5' U A 36 693 695 714 C5' U A 37 713 715 734 C5' G A 38 733 735 757 C5' C A 39 756 758 777 C5' A A 40 776 778 799 C5' C A 41 798 800 819 C5' U A 42 818 820 839 C5' C A 43 838 840 859 C5' C A 44 858 860 879 C5' G A 45 878 880 902 C5' G A 46 901 903 925 C5' G A 47 924 926 948 C5' C A 48 947 949 968 C5' C A 49 967 969 988 C5' U A 50 987 989 1008 C5' G A 51 1007 1009 1031 C5' A A 52 1030 1032 1053 C5' A A 53 1052 1054 1075 C5' G A 54 1074 1076 1098 C5' C A 55 1097 1099 1118 C5' A A 56 1117 1119 1140 C5' A A 57 1139 1141 1162 C5' C A 58 1161 1163 1182 C5' G A 59 1181 1183 1205 C5' C A 60 1204 1206 1225 C5' U A 61 1224 1226 1900 C5' C B 1 1899 1901 1920 C5' G B 2 1919 1921 1943 C5' U B 3 1942 1944 1963 C5' U B 4 1962 1964 1983 C5' G B 5 1982 1984 2006 C5' G B 6 2005 2007 2029 C5' C B 7 2028 2030 2049 C5' C B 8 2048 2050 2069 C5' C B 9 2068 2070 2089 C5' A B 10 2088 2090 2111 C5' G B 11 2110 2112 2134 C5' G B 12 2133 2135 2157 C5' A B 13 2156 2158 2179 C5' A B 14 2178 2180 2201 C5' A B 15 2200 2202 2223 C5' C B 16 2222 2224 2243 C5' U B 17 2242 2244 2263 C5' G B 18 2262 2264 2286 C5' G B 19 2285 2287 2309 C5' G B 20 2308 2310 2332 C5' U B 21 2331 2333 2352 C5' A B 25 2351 2353 2374 C5' G B 26 2373 2375 2397 C5' U B 27 2396 2398 2417 C5' A B 28 2416 2418 2439 C5' A B 29 2438 2440 2461 C5' G B 30 2460 2462 2484 C5' G B 31 2483 2485 2507 C5' U B 32 2506 2508 2527 C5' C B 33 2526 2528 2547 C5' C B 34 2546 2548 2567 C5' A B 35 2566 2568 2589 C5' U B 36 2588 2590 2609 C5' U B 37 2608 2610 2629 C5' G B 38 2628 2630 2652 C5' C B 39 2651 2653 2672 C5' A B 40 2671 2673 2694 C5' C B 41 2693 2695 2714 C5' U B 42 2713 2715 2734 C5' C B 43 2733 2735 2754 C5' C B 44 2753 2755 2774 C5' G B 45 2773 2775 2797 C5' G B 46 2796 2798 2820 C5' G B 47 2819 2821 2843 C5' C B 48 2842 2844 2863 C5' C B 49 2862 2864 2883 C5' U B 50 2882 2884 2903 C5' G B 51 2902 2904 2926 C5' A B 52 2925 2927 2948 C5' A B 53 2947 2949 2970 C5' G B 54 2969 2971 2993 C5' C B 55 2992 2994 3013 C5' A B 56 3012 3014 3035 C5' A B 57 3034 3036 3057 C5' C B 58 3056 3058 3077 C5' G B 59 3076 3078 3100 C5' C B 60 3099 3101 3120 C5' U B 61 3119 3121 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 1 P C A 1 OK OK 2 3 4 21 P G A 2 distorted distorted 9 22 23 24 44 P U A 3 distorted distorted 29 45 46 47 64 P U A 4 distorted distorted 52 65 66 67 84 P G A 5 distorted distorted 72 85 86 87 107 P G A 6 distorted distorted 92 108 109 110 130 P C A 7 distorted distorted 115 131 132 133 150 P C A 8 distorted distorted 138 151 152 153 170 P C A 9 distorted distorted 158 171 172 173 190 P A A 10 distorted distorted 178 191 192 193 212 P G A 11 distorted distorted 198 213 214 215 235 P G A 12 distorted distorted 220 236 237 238 258 P A A 13 distorted distorted 243 259 260 261 280 P A A 14 distorted distorted 266 281 282 283 302 P A A 15 distorted distorted 288 303 304 305 324 P C A 16 distorted distorted 310 325 326 327 344 P U A 17 distorted distorted 332 345 346 347 364 P G A 18 distorted distorted 352 365 366 367 387 P G A 19 distorted distorted 372 388 389 390 410 P G A 20 distorted distorted 395 411 412 413 433 P U A 21 distorted distorted 418 434 435 436 453 P A A 25 distorted distorted 454 455 456 475 P G A 26 distorted distorted 461 476 477 478 498 P U A 27 distorted distorted 483 499 500 501 518 P A A 28 distorted distorted 506 519 520 521 540 P A A 29 distorted distorted 526 541 542 543 562 P G A 30 distorted distorted 548 563 564 565 585 P G A 31 distorted distorted 570 586 587 588 608 P U A 32 distorted distorted 593 609 610 611 628 P C A 33 distorted distorted 616 629 630 631 648 P C A 34 distorted distorted 636 649 650 651 668 P A A 35 distorted distorted 656 669 670 671 690 P U A 36 distorted distorted 676 691 692 693 710 P U A 37 distorted distorted 698 711 712 713 730 P G A 38 distorted distorted 718 731 732 733 753 P C A 39 distorted distorted 738 754 755 756 773 P A A 40 distorted distorted 761 774 775 776 795 P C A 41 distorted distorted 781 796 797 798 815 P U A 42 distorted distorted 803 816 817 818 835 P C A 43 distorted distorted 823 836 837 838 855 P C A 44 distorted distorted 843 856 857 858 875 P G A 45 distorted distorted 863 876 877 878 898 P G A 46 distorted distorted 883 899 900 901 921 P G A 47 distorted distorted 906 922 923 924 944 P C A 48 distorted distorted 929 945 946 947 964 P C A 49 distorted distorted 952 965 966 967 984 P U A 50 distorted distorted 972 985 986 987 1004 P G A 51 distorted distorted 992 1005 1006 1007 1027 P A A 52 distorted distorted 1012 1028 1029 1030 1049 P A A 53 distorted distorted 1035 1050 1051 1052 1071 P G A 54 distorted distorted 1057 1072 1073 1074 1094 P C A 55 distorted distorted 1079 1095 1096 1097 1114 P A A 56 distorted distorted 1102 1115 1116 1117 1136 P A A 57 distorted distorted 1122 1137 1138 1139 1158 P C A 58 distorted distorted 1144 1159 1160 1161 1178 P G A 59 distorted distorted 1166 1179 1180 1181 1201 P C A 60 distorted distorted 1186 1202 1203 1204 1221 P U A 61 distorted distorted 1209 1222 1223 1224 1896 P C B 1 distorted distorted 1897 1898 1899 1916 P G B 2 distorted distorted 1904 1917 1918 1919 1939 P U B 3 distorted distorted 1924 1940 1941 1942 1959 P U B 4 distorted distorted 1947 1960 1961 1962 1979 P G B 5 distorted distorted 1967 1980 1981 1982 2002 P G B 6 distorted distorted 1987 2003 2004 2005 2025 P C B 7 distorted distorted 2010 2026 2027 2028 2045 P C B 8 distorted distorted 2033 2046 2047 2048 2065 P C B 9 distorted distorted 2053 2066 2067 2068 2085 P A B 10 distorted distorted 2073 2086 2087 2088 2107 P G B 11 distorted distorted 2093 2108 2109 2110 2130 P G B 12 distorted distorted 2115 2131 2132 2133 2153 P A B 13 distorted distorted 2138 2154 2155 2156 2175 P A B 14 distorted distorted 2161 2176 2177 2178 2197 P A B 15 distorted distorted 2183 2198 2199 2200 2219 P C B 16 distorted distorted 2205 2220 2221 2222 2239 P U B 17 distorted distorted 2227 2240 2241 2242 2259 P G B 18 distorted distorted 2247 2260 2261 2262 2282 P G B 19 distorted distorted 2267 2283 2284 2285 2305 P G B 20 distorted distorted 2290 2306 2307 2308 2328 P U B 21 distorted distorted 2313 2329 2330 2331 2348 P A B 25 distorted distorted 2349 2350 2351 2370 P G B 26 distorted distorted 2356 2371 2372 2373 2393 P U B 27 distorted distorted 2378 2394 2395 2396 2413 P A B 28 distorted distorted 2401 2414 2415 2416 2435 P A B 29 distorted distorted 2421 2436 2437 2438 2457 P G B 30 distorted distorted 2443 2458 2459 2460 2480 P G B 31 distorted distorted 2465 2481 2482 2483 2503 P U B 32 distorted distorted 2488 2504 2505 2506 2523 P C B 33 distorted distorted 2511 2524 2525 2526 2543 P C B 34 distorted distorted 2531 2544 2545 2546 2563 P A B 35 distorted distorted 2551 2564 2565 2566 2585 P U B 36 distorted distorted 2571 2586 2587 2588 2605 P U B 37 distorted distorted 2593 2606 2607 2608 2625 P G B 38 distorted distorted 2613 2626 2627 2628 2648 P C B 39 distorted distorted 2633 2649 2650 2651 2668 P A B 40 distorted distorted 2656 2669 2670 2671 2690 P C B 41 distorted distorted 2676 2691 2692 2693 2710 P U B 42 distorted distorted 2698 2711 2712 2713 2730 P C B 43 distorted distorted 2718 2731 2732 2733 2750 P C B 44 distorted distorted 2738 2751 2752 2753 2770 P G B 45 distorted distorted 2758 2771 2772 2773 2793 P G B 46 distorted distorted 2778 2794 2795 2796 2816 P G B 47 distorted distorted 2801 2817 2818 2819 2839 P C B 48 distorted distorted 2824 2840 2841 2842 2859 P C B 49 distorted distorted 2847 2860 2861 2862 2879 P U B 50 distorted distorted 2867 2880 2881 2882 2899 P G B 51 distorted distorted 2887 2900 2901 2902 2922 P A B 52 distorted distorted 2907 2923 2924 2925 2944 P A B 53 distorted distorted 2930 2945 2946 2947 2966 P G B 54 distorted distorted 2952 2967 2968 2969 2989 P C B 55 distorted distorted 2974 2990 2991 2992 3009 P A B 56 distorted distorted 2997 3010 3011 3012 3031 P A B 57 distorted distorted 3017 3032 3033 3034 3053 P C B 58 distorted distorted 3039 3054 3055 3056 3073 P G B 59 distorted distorted 3061 3074 3075 3076 3096 P C B 60 distorted distorted 3081 3097 3098 3099 3116 P U B 61 distorted distorted 3104 3117 3118 3119 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