ID code: '5DAR' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 13 C1' G A1151 beta 8 14 11 36 C1' C A1152 beta 31 37 34 56 C1' C A1153 beta 51 57 54 76 C1' U A1154 beta 71 77 74 96 C1' A A1155 beta 91 97 94 118 C1' A A1156 beta 113 119 116 140 C1' G A1157 beta 135 141 138 163 C1' A A1158 beta 158 164 161 185 C1' C A1159 beta 180 186 183 205 C1' A A1160 beta 200 206 203 227 C1' G A1161 beta 222 228 225 250 C1' C A1162 beta 245 251 248 270 C1' G A1163 beta 265 271 268 293 C1' G A1164 beta 288 294 291 316 C1' G A1165 beta 311 317 314 339 C1' G A1166 beta 334 340 337 362 C1' A A1167 beta 357 363 360 384 C1' G A1168 beta 379 385 382 407 C1' G A1169 beta 402 408 405 430 C1' U A1170 beta 425 431 428 450 C1' U A1171 beta 445 451 448 470 C1' G A1172 beta 465 471 468 493 C1' G A1173 beta 488 494 491 516 C1' C A1174 beta 511 517 514 536 C1' U A1175 beta 531 537 534 556 C1' U A1176 beta 551 557 554 576 C1' A A1177 beta 571 577 574 598 C1' G A1178 beta 593 599 596 621 C1' A A1179 beta 616 622 619 643 C1' A A1180 beta 638 644 641 665 C1' G A1181 beta 660 666 663 688 C1' C A1182 beta 683 689 686 708 C1' A A1183 beta 703 709 706 730 C1' G A1184 beta 725 731 728 753 C1' C A1185 beta 748 754 751 773 C1' C A1186 beta 768 774 771 793 C1' A A1187 beta 788 794 791 815 C1' U A1188 beta 810 816 813 835 C1' C A1189 beta 830 836 833 855 C1' C A1190 beta 850 856 853 875 C1' U A1191 beta 870 876 873 895 C1' U A1192 beta 890 896 893 915 C1' U A1193 beta 910 916 913 935 C1' A A1194 beta 930 936 933 957 C1' A A1195 beta 952 958 955 979 C1' A A1196 beta 974 980 977 1001 C1' G A1197 beta 996 1002 999 1024 C1' A A1198 beta 1019 1025 1022 1046 C1' G A1199 beta 1041 1047 1044 1069 C1' U A1200 beta 1064 1070 1067 1089 C1' G A1201 beta 1084 1090 1087 1112 C1' C A1202 beta 1107 1113 1110 1132 C1' G A1203 beta 1127 1133 1130 1155 C1' U A1204 beta 1150 1156 1153 1175 C1' A A1205 beta 1170 1176 1173 1197 C1' A A1206 beta 1192 1198 1195 1219 C1' C A1207 beta 1214 1220 1217 1239 C1' A A1208 beta 1234 1240 1237 1261 C1' G A1209 beta 1256 1262 1259 1284 C1' C A1210 beta 1279 1285 1282 1304 C1' U A1211 beta 1299 1305 1302 1324 C1' C A1212 beta 1319 1325 1322 1344 C1' A A1213 beta 1339 1345 1342 1366 C1' C A1214 beta 1361 1367 1364 1386 C1' C A1215 beta 1381 1387 1384 1406 C1' C A1216 beta 1401 1407 1404 1426 C1' G A1217 beta 1421 1427 1424 1449 C1' U A1218 beta 1444 1450 1447 1469 C1' C A1219 beta 1464 1470 1467 1489 C1' G A1220 beta 1484 1490 1487 1512 C1' A A1221 beta 1507 1513 1510 1534 C1' G A1222 beta 1529 1535 1532 1557 C1' G A1223 beta 1552 1558 1555 1580 C1' C A1224 beta 1575 1581 1578 4044 C1' G D1151 beta 4039 4045 4042 4067 C1' C D1152 beta 4062 4068 4065 4087 C1' C D1153 beta 4082 4088 4085 4107 C1' U D1154 beta 4102 4108 4105 4127 C1' A D1155 beta 4122 4128 4125 4149 C1' A D1156 beta 4144 4150 4147 4171 C1' G D1157 beta 4166 4172 4169 4194 C1' A D1158 beta 4189 4195 4192 4216 C1' C D1159 beta 4211 4217 4214 4236 C1' A D1160 beta 4231 4237 4234 4258 C1' G D1161 beta 4253 4259 4256 4281 C1' C D1162 beta 4276 4282 4279 4301 C1' G D1163 beta 4296 4302 4299 4324 C1' G D1164 beta 4319 4325 4322 4347 C1' G D1165 beta 4342 4348 4345 4370 C1' G D1166 beta 4365 4371 4368 4393 C1' A D1167 beta 4388 4394 4391 4415 C1' G D1168 beta 4410 4416 4413 4438 C1' G D1169 beta 4433 4439 4436 4461 C1' U D1170 beta 4456 4462 4459 4481 C1' U D1171 beta 4476 4482 4479 4501 C1' G D1172 beta 4496 4502 4499 4524 C1' G D1173 beta 4519 4525 4522 4547 C1' C D1174 beta 4542 4548 4545 4567 C1' U D1175 beta 4562 4568 4565 4587 C1' U D1176 beta 4582 4588 4585 4607 C1' A D1177 beta 4602 4608 4605 4629 C1' G D1178 beta 4624 4630 4627 4652 C1' A D1179 beta 4647 4653 4650 4674 C1' A D1180 beta 4669 4675 4672 4696 C1' G D1181 beta 4691 4697 4694 4719 C1' C D1182 beta 4714 4720 4717 4739 C1' A D1183 beta 4734 4740 4737 4761 C1' G D1184 beta 4756 4762 4759 4784 C1' C D1185 beta 4779 4785 4782 4804 C1' C D1186 beta 4799 4805 4802 4824 C1' A D1187 beta 4819 4825 4822 4846 C1' U D1188 beta 4841 4847 4844 4866 C1' C D1189 beta 4861 4867 4864 4886 C1' C D1190 beta 4881 4887 4884 4906 C1' U D1191 beta 4901 4907 4904 4926 C1' U D1192 beta 4921 4927 4924 4946 C1' U D1193 beta 4941 4947 4944 4966 C1' A D1194 beta 4961 4967 4964 4988 C1' A D1195 beta 4983 4989 4986 5010 C1' A D1196 beta 5005 5011 5008 5032 C1' G D1197 beta 5027 5033 5030 5055 C1' A D1198 beta 5050 5056 5053 5077 C1' G D1199 beta 5072 5078 5075 5100 C1' U D1200 beta 5095 5101 5098 5120 C1' G D1201 beta 5115 5121 5118 5143 C1' C D1202 beta 5138 5144 5141 5163 C1' G D1203 beta 5158 5164 5161 5186 C1' U D1204 beta 5181 5187 5184 5206 C1' A D1205 beta 5201 5207 5204 5228 C1' A D1206 beta 5223 5229 5226 5250 C1' C D1207 beta 5245 5251 5248 5270 C1' A D1208 beta 5265 5271 5268 5292 C1' G D1209 beta 5287 5293 5290 5315 C1' C D1210 beta 5310 5316 5313 5335 C1' U D1211 beta 5330 5336 5333 5355 C1' C D1212 beta 5350 5356 5353 5375 C1' A D1213 beta 5370 5376 5373 5397 C1' C D1214 beta 5392 5398 5395 5417 C1' C D1215 beta 5412 5418 5415 5437 C1' C D1216 beta 5432 5438 5435 5457 C1' G D1217 beta 5452 5458 5455 5480 C1' U D1218 beta 5475 5481 5478 5500 C1' C D1219 beta 5495 5501 5498 5520 C1' G D1220 beta 5515 5521 5518 5543 C1' A D1221 beta 5538 5544 5541 5565 C1' G D1222 beta 5560 5566 5563 5588 C1' G D1223 beta 5583 5589 5586 5611 C1' C D1224 beta 5606 5612 5609 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 11 C2' G A1151 OK 13 9 12 34 C2' C A1152 OK 36 32 35 54 C2' C A1153 OK 56 52 55 74 C2' U A1154 OK 76 72 75 94 C2' A A1155 OK 96 92 95 116 C2' A A1156 OK 118 114 117 138 C2' G A1157 OK 140 136 139 161 C2' A A1158 OK 163 159 162 183 C2' C A1159 OK 185 181 184 203 C2' A A1160 OK 205 201 204 225 C2' G A1161 OK 227 223 226 248 C2' C A1162 OK 250 246 249 268 C2' G A1163 OK 270 266 269 291 C2' G A1164 OK 293 289 292 314 C2' G A1165 OK 316 312 315 337 C2' G A1166 OK 339 335 338 360 C2' A A1167 OK 362 358 361 382 C2' G A1168 OK 384 380 383 405 C2' G A1169 OK 407 403 406 428 C2' U A1170 OK 430 426 429 448 C2' U A1171 OK 450 446 449 468 C2' G A1172 OK 470 466 469 491 C2' G A1173 OK 493 489 492 514 C2' C A1174 OK 516 512 515 534 C2' U A1175 OK 536 532 535 554 C2' U A1176 OK 556 552 555 574 C2' A A1177 OK 576 572 575 596 C2' G A1178 OK 598 594 597 619 C2' A A1179 OK 621 617 620 641 C2' A A1180 OK 643 639 642 663 C2' G A1181 OK 665 661 664 686 C2' C A1182 OK 688 684 687 706 C2' A A1183 OK 708 704 707 728 C2' G A1184 OK 730 726 729 751 C2' C A1185 OK 753 749 752 771 C2' C A1186 OK 773 769 772 791 C2' A A1187 OK 793 789 792 813 C2' U A1188 OK 815 811 814 833 C2' C A1189 OK 835 831 834 853 C2' C A1190 OK 855 851 854 873 C2' U A1191 OK 875 871 874 893 C2' U A1192 OK 895 891 894 913 C2' U A1193 OK 915 911 914 933 C2' A A1194 OK 935 931 934 955 C2' A A1195 OK 957 953 956 977 C2' A A1196 OK 979 975 978 999 C2' G A1197 OK 1001 997 1000 1022 C2' A A1198 OK 1024 1020 1023 1044 C2' G A1199 OK 1046 1042 1045 1067 C2' U A1200 OK 1069 1065 1068 1087 C2' G A1201 OK 1089 1085 1088 1110 C2' C A1202 OK 1112 1108 1111 1130 C2' G A1203 OK 1132 1128 1131 1153 C2' U A1204 OK 1155 1151 1154 1173 C2' A A1205 OK 1175 1171 1174 1195 C2' A A1206 OK 1197 1193 1196 1217 C2' C A1207 OK 1219 1215 1218 1237 C2' A A1208 OK 1239 1235 1238 1259 C2' G A1209 OK 1261 1257 1260 1282 C2' C A1210 OK 1284 1280 1283 1302 C2' U A1211 OK 1304 1300 1303 1322 C2' C A1212 OK 1324 1320 1323 1342 C2' A A1213 OK 1344 1340 1343 1364 C2' C A1214 OK 1366 1362 1365 1384 C2' C A1215 OK 1386 1382 1385 1404 C2' C A1216 OK 1406 1402 1405 1424 C2' G A1217 OK 1426 1422 1425 1447 C2' U A1218 OK 1449 1445 1448 1467 C2' C A1219 OK 1469 1465 1468 1487 C2' G A1220 OK 1489 1485 1488 1510 C2' A A1221 OK 1512 1508 1511 1532 C2' G A1222 OK 1534 1530 1533 1555 C2' G A1223 OK 1557 1553 1556 1578 C2' C A1224 OK 1580 1576 1579 4042 C2' G D1151 OK 4044 4040 4043 4065 C2' C D1152 OK 4067 4063 4066 4085 C2' C D1153 OK 4087 4083 4086 4105 C2' U D1154 OK 4107 4103 4106 4125 C2' A D1155 OK 4127 4123 4126 4147 C2' A D1156 OK 4149 4145 4148 4169 C2' G D1157 OK 4171 4167 4170 4192 C2' A D1158 OK 4194 4190 4193 4214 C2' C D1159 OK 4216 4212 4215 4234 C2' A D1160 OK 4236 4232 4235 4256 C2' G D1161 OK 4258 4254 4257 4279 C2' C D1162 OK 4281 4277 4280 4299 C2' G D1163 OK 4301 4297 4300 4322 C2' G D1164 OK 4324 4320 4323 4345 C2' G D1165 OK 4347 4343 4346 4368 C2' G D1166 OK 4370 4366 4369 4391 C2' A D1167 OK 4393 4389 4392 4413 C2' G D1168 OK 4415 4411 4414 4436 C2' G D1169 OK 4438 4434 4437 4459 C2' U D1170 OK 4461 4457 4460 4479 C2' U D1171 OK 4481 4477 4480 4499 C2' G D1172 OK 4501 4497 4500 4522 C2' G D1173 OK 4524 4520 4523 4545 C2' C D1174 OK 4547 4543 4546 4565 C2' U D1175 OK 4567 4563 4566 4585 C2' U D1176 OK 4587 4583 4586 4605 C2' A D1177 OK 4607 4603 4606 4627 C2' G D1178 OK 4629 4625 4628 4650 C2' A D1179 OK 4652 4648 4651 4672 C2' A D1180 OK 4674 4670 4673 4694 C2' G D1181 OK 4696 4692 4695 4717 C2' C D1182 OK 4719 4715 4718 4737 C2' A D1183 OK 4739 4735 4738 4759 C2' G D1184 OK 4761 4757 4760 4782 C2' C D1185 OK 4784 4780 4783 4802 C2' C D1186 OK 4804 4800 4803 4822 C2' A D1187 OK 4824 4820 4823 4844 C2' U D1188 OK 4846 4842 4845 4864 C2' C D1189 OK 4866 4862 4865 4884 C2' C D1190 OK 4886 4882 4885 4904 C2' U D1191 OK 4906 4902 4905 4924 C2' U D1192 OK 4926 4922 4925 4944 C2' U D1193 OK 4946 4942 4945 4964 C2' A D1194 OK 4966 4962 4965 4986 C2' A D1195 OK 4988 4984 4987 5008 C2' A D1196 OK 5010 5006 5009 5030 C2' G D1197 OK 5032 5028 5031 5053 C2' A D1198 OK 5055 5051 5054 5075 C2' G D1199 OK 5077 5073 5076 5098 C2' U D1200 OK 5100 5096 5099 5118 C2' G D1201 OK 5120 5116 5119 5141 C2' C D1202 OK 5143 5139 5142 5161 C2' G D1203 OK 5163 5159 5162 5184 C2' U D1204 OK 5186 5182 5185 5204 C2' A D1205 OK 5206 5202 5205 5226 C2' A D1206 OK 5228 5224 5227 5248 C2' C D1207 OK 5250 5246 5249 5268 C2' A D1208 OK 5270 5266 5269 5290 C2' G D1209 OK 5292 5288 5291 5313 C2' C D1210 OK 5315 5311 5314 5333 C2' U D1211 OK 5335 5331 5334 5353 C2' C D1212 OK 5355 5351 5354 5373 C2' A D1213 OK 5375 5371 5374 5395 C2' C D1214 OK 5397 5393 5396 5415 C2' C D1215 OK 5417 5413 5416 5435 C2' C D1216 OK 5437 5433 5436 5455 C2' G D1217 OK 5457 5453 5456 5478 C2' U D1218 OK 5480 5476 5479 5498 C2' C D1219 OK 5500 5496 5499 5518 C2' G D1220 OK 5520 5516 5519 5541 C2' A D1221 OK 5543 5539 5542 5563 C2' G D1222 OK 5565 5561 5564 5586 C2' G D1223 OK 5588 5584 5587 5609 C2' C D1224 OK 5611 5607 5610 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 9 C3' G A1151 OK 7 10 11 32 C3' C A1152 OK 30 33 34 52 C3' C A1153 OK 50 53 54 72 C3' U A1154 OK 70 73 74 92 C3' A A1155 OK 90 93 94 114 C3' A A1156 OK 112 115 116 136 C3' G A1157 OK 134 137 138 159 C3' A A1158 OK 157 160 161 181 C3' C A1159 OK 179 182 183 201 C3' A A1160 OK 199 202 203 223 C3' G A1161 OK 221 224 225 246 C3' C A1162 OK 244 247 248 266 C3' G A1163 OK 264 267 268 289 C3' G A1164 OK 287 290 291 312 C3' G A1165 OK 310 313 314 335 C3' G A1166 OK 333 336 337 358 C3' A A1167 OK 356 359 360 380 C3' G A1168 OK 378 381 382 403 C3' G A1169 OK 401 404 405 426 C3' U A1170 OK 424 427 428 446 C3' U A1171 OK 444 447 448 466 C3' G A1172 OK 464 467 468 489 C3' G A1173 OK 487 490 491 512 C3' C A1174 OK 510 513 514 532 C3' U A1175 OK 530 533 534 552 C3' U A1176 OK 550 553 554 572 C3' A A1177 OK 570 573 574 594 C3' G A1178 OK 592 595 596 617 C3' A A1179 OK 615 618 619 639 C3' A A1180 OK 637 640 641 661 C3' G A1181 OK 659 662 663 684 C3' C A1182 OK 682 685 686 704 C3' A A1183 OK 702 705 706 726 C3' G A1184 OK 724 727 728 749 C3' C A1185 OK 747 750 751 769 C3' C A1186 OK 767 770 771 789 C3' A A1187 OK 787 790 791 811 C3' U A1188 OK 809 812 813 831 C3' C A1189 OK 829 832 833 851 C3' C A1190 OK 849 852 853 871 C3' U A1191 OK 869 872 873 891 C3' U A1192 OK 889 892 893 911 C3' U A1193 OK 909 912 913 931 C3' A A1194 OK 929 932 933 953 C3' A A1195 OK 951 954 955 975 C3' A A1196 OK 973 976 977 997 C3' G A1197 OK 995 998 999 1020 C3' A A1198 OK 1018 1021 1022 1042 C3' G A1199 OK 1040 1043 1044 1065 C3' U A1200 OK 1063 1066 1067 1085 C3' G A1201 OK 1083 1086 1087 1108 C3' C A1202 OK 1106 1109 1110 1128 C3' G A1203 OK 1126 1129 1130 1151 C3' U A1204 OK 1149 1152 1153 1171 C3' A A1205 OK 1169 1172 1173 1193 C3' A A1206 OK 1191 1194 1195 1215 C3' C A1207 OK 1213 1216 1217 1235 C3' A A1208 OK 1233 1236 1237 1257 C3' G A1209 OK 1255 1258 1259 1280 C3' C A1210 OK 1278 1281 1282 1300 C3' U A1211 OK 1298 1301 1302 1320 C3' C A1212 OK 1318 1321 1322 1340 C3' A A1213 OK 1338 1341 1342 1362 C3' C A1214 OK 1360 1363 1364 1382 C3' C A1215 OK 1380 1383 1384 1402 C3' C A1216 OK 1400 1403 1404 1422 C3' G A1217 OK 1420 1423 1424 1445 C3' U A1218 OK 1443 1446 1447 1465 C3' C A1219 OK 1463 1466 1467 1485 C3' G A1220 OK 1483 1486 1487 1508 C3' A A1221 OK 1506 1509 1510 1530 C3' G A1222 OK 1528 1531 1532 1553 C3' G A1223 OK 1551 1554 1555 1576 C3' C A1224 OK 1574 1577 1578 4040 C3' G D1151 OK 4038 4041 4042 4063 C3' C D1152 OK 4061 4064 4065 4083 C3' C D1153 OK 4081 4084 4085 4103 C3' U D1154 OK 4101 4104 4105 4123 C3' A D1155 OK 4121 4124 4125 4145 C3' A D1156 OK 4143 4146 4147 4167 C3' G D1157 OK 4165 4168 4169 4190 C3' A D1158 OK 4188 4191 4192 4212 C3' C D1159 OK 4210 4213 4214 4232 C3' A D1160 OK 4230 4233 4234 4254 C3' G D1161 OK 4252 4255 4256 4277 C3' C D1162 OK 4275 4278 4279 4297 C3' G D1163 OK 4295 4298 4299 4320 C3' G D1164 OK 4318 4321 4322 4343 C3' G D1165 OK 4341 4344 4345 4366 C3' G D1166 OK 4364 4367 4368 4389 C3' A D1167 OK 4387 4390 4391 4411 C3' G D1168 OK 4409 4412 4413 4434 C3' G D1169 OK 4432 4435 4436 4457 C3' U D1170 OK 4455 4458 4459 4477 C3' U D1171 OK 4475 4478 4479 4497 C3' G D1172 OK 4495 4498 4499 4520 C3' G D1173 OK 4518 4521 4522 4543 C3' C D1174 OK 4541 4544 4545 4563 C3' U D1175 OK 4561 4564 4565 4583 C3' U D1176 OK 4581 4584 4585 4603 C3' A D1177 OK 4601 4604 4605 4625 C3' G D1178 OK 4623 4626 4627 4648 C3' A D1179 OK 4646 4649 4650 4670 C3' A D1180 OK 4668 4671 4672 4692 C3' G D1181 OK 4690 4693 4694 4715 C3' C D1182 OK 4713 4716 4717 4735 C3' A D1183 OK 4733 4736 4737 4757 C3' G D1184 OK 4755 4758 4759 4780 C3' C D1185 OK 4778 4781 4782 4800 C3' C D1186 OK 4798 4801 4802 4820 C3' A D1187 OK 4818 4821 4822 4842 C3' U D1188 OK 4840 4843 4844 4862 C3' C D1189 OK 4860 4863 4864 4882 C3' C D1190 OK 4880 4883 4884 4902 C3' U D1191 OK 4900 4903 4904 4922 C3' U D1192 OK 4920 4923 4924 4942 C3' U D1193 OK 4940 4943 4944 4962 C3' A D1194 OK 4960 4963 4964 4984 C3' A D1195 OK 4982 4985 4986 5006 C3' A D1196 OK 5004 5007 5008 5028 C3' G D1197 OK 5026 5029 5030 5051 C3' A D1198 OK 5049 5052 5053 5073 C3' G D1199 OK 5071 5074 5075 5096 C3' U D1200 OK 5094 5097 5098 5116 C3' G D1201 OK 5114 5117 5118 5139 C3' C D1202 OK 5137 5140 5141 5159 C3' G D1203 OK 5157 5160 5161 5182 C3' U D1204 OK 5180 5183 5184 5202 C3' A D1205 OK 5200 5203 5204 5224 C3' A D1206 OK 5222 5225 5226 5246 C3' C D1207 OK 5244 5247 5248 5266 C3' A D1208 OK 5264 5267 5268 5288 C3' G D1209 OK 5286 5289 5290 5311 C3' C D1210 OK 5309 5312 5313 5331 C3' U D1211 OK 5329 5332 5333 5351 C3' C D1212 OK 5349 5352 5353 5371 C3' A D1213 OK 5369 5372 5373 5393 C3' C D1214 OK 5391 5394 5395 5413 C3' C D1215 OK 5411 5414 5415 5433 C3' C D1216 OK 5431 5434 5435 5453 C3' G D1217 OK 5451 5454 5455 5476 C3' U D1218 OK 5474 5477 5478 5496 C3' C D1219 OK 5494 5497 5498 5516 C3' G D1220 OK 5514 5517 5518 5539 C3' A D1221 OK 5537 5540 5541 5561 C3' G D1222 OK 5559 5562 5563 5584 C3' G D1223 OK 5582 5585 5586 5607 C3' C D1224 OK 5605 5608 5609 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 7 C4' G A1151 OK 9 6 8 30 C4' C A1152 OK 32 29 31 50 C4' C A1153 OK 52 49 51 70 C4' U A1154 OK 72 69 71 90 C4' A A1155 OK 92 89 91 112 C4' A A1156 OK 114 111 113 134 C4' G A1157 OK 136 133 135 157 C4' A A1158 OK 159 156 158 179 C4' C A1159 OK 181 178 180 199 C4' A A1160 OK 201 198 200 221 C4' G A1161 OK 223 220 222 244 C4' C A1162 OK 246 243 245 264 C4' G A1163 OK 266 263 265 287 C4' G A1164 OK 289 286 288 310 C4' G A1165 OK 312 309 311 333 C4' G A1166 OK 335 332 334 356 C4' A A1167 OK 358 355 357 378 C4' G A1168 OK 380 377 379 401 C4' G A1169 OK 403 400 402 424 C4' U A1170 OK 426 423 425 444 C4' U A1171 OK 446 443 445 464 C4' G A1172 OK 466 463 465 487 C4' G A1173 OK 489 486 488 510 C4' C A1174 OK 512 509 511 530 C4' U A1175 OK 532 529 531 550 C4' U A1176 OK 552 549 551 570 C4' A A1177 OK 572 569 571 592 C4' G A1178 OK 594 591 593 615 C4' A A1179 OK 617 614 616 637 C4' A A1180 OK 639 636 638 659 C4' G A1181 OK 661 658 660 682 C4' C A1182 OK 684 681 683 702 C4' A A1183 OK 704 701 703 724 C4' G A1184 OK 726 723 725 747 C4' C A1185 OK 749 746 748 767 C4' C A1186 OK 769 766 768 787 C4' A A1187 OK 789 786 788 809 C4' U A1188 OK 811 808 810 829 C4' C A1189 OK 831 828 830 849 C4' C A1190 OK 851 848 850 869 C4' U A1191 OK 871 868 870 889 C4' U A1192 OK 891 888 890 909 C4' U A1193 OK 911 908 910 929 C4' A A1194 OK 931 928 930 951 C4' A A1195 OK 953 950 952 973 C4' A A1196 OK 975 972 974 995 C4' G A1197 OK 997 994 996 1018 C4' A A1198 OK 1020 1017 1019 1040 C4' G A1199 OK 1042 1039 1041 1063 C4' U A1200 OK 1065 1062 1064 1083 C4' G A1201 OK 1085 1082 1084 1106 C4' C A1202 OK 1108 1105 1107 1126 C4' G A1203 OK 1128 1125 1127 1149 C4' U A1204 OK 1151 1148 1150 1169 C4' A A1205 OK 1171 1168 1170 1191 C4' A A1206 OK 1193 1190 1192 1213 C4' C A1207 OK 1215 1212 1214 1233 C4' A A1208 OK 1235 1232 1234 1255 C4' G A1209 OK 1257 1254 1256 1278 C4' C A1210 OK 1280 1277 1279 1298 C4' U A1211 OK 1300 1297 1299 1318 C4' C A1212 OK 1320 1317 1319 1338 C4' A A1213 OK 1340 1337 1339 1360 C4' C A1214 OK 1362 1359 1361 1380 C4' C A1215 OK 1382 1379 1381 1400 C4' C A1216 OK 1402 1399 1401 1420 C4' G A1217 OK 1422 1419 1421 1443 C4' U A1218 OK 1445 1442 1444 1463 C4' C A1219 OK 1465 1462 1464 1483 C4' G A1220 OK 1485 1482 1484 1506 C4' A A1221 OK 1508 1505 1507 1528 C4' G A1222 OK 1530 1527 1529 1551 C4' G A1223 OK 1553 1550 1552 1574 C4' C A1224 OK 1576 1573 1575 4038 C4' G D1151 OK 4040 4037 4039 4061 C4' C D1152 OK 4063 4060 4062 4081 C4' C D1153 OK 4083 4080 4082 4101 C4' U D1154 OK 4103 4100 4102 4121 C4' A D1155 OK 4123 4120 4122 4143 C4' A D1156 OK 4145 4142 4144 4165 C4' G D1157 OK 4167 4164 4166 4188 C4' A D1158 OK 4190 4187 4189 4210 C4' C D1159 OK 4212 4209 4211 4230 C4' A D1160 OK 4232 4229 4231 4252 C4' G D1161 OK 4254 4251 4253 4275 C4' C D1162 OK 4277 4274 4276 4295 C4' G D1163 OK 4297 4294 4296 4318 C4' G D1164 OK 4320 4317 4319 4341 C4' G D1165 OK 4343 4340 4342 4364 C4' G D1166 OK 4366 4363 4365 4387 C4' A D1167 OK 4389 4386 4388 4409 C4' G D1168 OK 4411 4408 4410 4432 C4' G D1169 OK 4434 4431 4433 4455 C4' U D1170 OK 4457 4454 4456 4475 C4' U D1171 OK 4477 4474 4476 4495 C4' G D1172 OK 4497 4494 4496 4518 C4' G D1173 OK 4520 4517 4519 4541 C4' C D1174 OK 4543 4540 4542 4561 C4' U D1175 OK 4563 4560 4562 4581 C4' U D1176 OK 4583 4580 4582 4601 C4' A D1177 OK 4603 4600 4602 4623 C4' G D1178 OK 4625 4622 4624 4646 C4' A D1179 OK 4648 4645 4647 4668 C4' A D1180 OK 4670 4667 4669 4690 C4' G D1181 OK 4692 4689 4691 4713 C4' C D1182 OK 4715 4712 4714 4733 C4' A D1183 OK 4735 4732 4734 4755 C4' G D1184 OK 4757 4754 4756 4778 C4' C D1185 OK 4780 4777 4779 4798 C4' C D1186 OK 4800 4797 4799 4818 C4' A D1187 OK 4820 4817 4819 4840 C4' U D1188 OK 4842 4839 4841 4860 C4' C D1189 OK 4862 4859 4861 4880 C4' C D1190 OK 4882 4879 4881 4900 C4' U D1191 OK 4902 4899 4901 4920 C4' U D1192 OK 4922 4919 4921 4940 C4' U D1193 OK 4942 4939 4941 4960 C4' A D1194 OK 4962 4959 4961 4982 C4' A D1195 OK 4984 4981 4983 5004 C4' A D1196 OK 5006 5003 5005 5026 C4' G D1197 OK 5028 5025 5027 5049 C4' A D1198 OK 5051 5048 5050 5071 C4' G D1199 OK 5073 5070 5072 5094 C4' U D1200 OK 5096 5093 5095 5114 C4' G D1201 OK 5116 5113 5115 5137 C4' C D1202 OK 5139 5136 5138 5157 C4' G D1203 OK 5159 5156 5158 5180 C4' U D1204 OK 5182 5179 5181 5200 C4' A D1205 OK 5202 5199 5201 5222 C4' A D1206 OK 5224 5221 5223 5244 C4' C D1207 OK 5246 5243 5245 5264 C4' A D1208 OK 5266 5263 5265 5286 C4' G D1209 OK 5288 5285 5287 5309 C4' C D1210 OK 5311 5308 5310 5329 C4' U D1211 OK 5331 5328 5330 5349 C4' C D1212 OK 5351 5348 5350 5369 C4' A D1213 OK 5371 5368 5370 5391 C4' C D1214 OK 5393 5390 5392 5411 C4' C D1215 OK 5413 5410 5412 5431 C4' C D1216 OK 5433 5430 5432 5451 C4' G D1217 OK 5453 5450 5452 5474 C4' U D1218 OK 5476 5473 5475 5494 C4' C D1219 OK 5496 5493 5495 5514 C4' G D1220 OK 5516 5513 5515 5537 C4' A D1221 OK 5539 5536 5538 5559 C4' G D1222 OK 5561 5558 5560 5582 C4' G D1223 OK 5584 5581 5583 5605 C4' C D1224 OK 5607 5604 5606 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 6 C5' G A1151 5 7 29 C5' C A1152 28 30 49 C5' C A1153 48 50 69 C5' U A1154 68 70 89 C5' A A1155 88 90 111 C5' A A1156 110 112 133 C5' G A1157 132 134 156 C5' A A1158 155 157 178 C5' C A1159 177 179 198 C5' A A1160 197 199 220 C5' G A1161 219 221 243 C5' C A1162 242 244 263 C5' G A1163 262 264 286 C5' G A1164 285 287 309 C5' G A1165 308 310 332 C5' G A1166 331 333 355 C5' A A1167 354 356 377 C5' G A1168 376 378 400 C5' G A1169 399 401 423 C5' U A1170 422 424 443 C5' U A1171 442 444 463 C5' G A1172 462 464 486 C5' G A1173 485 487 509 C5' C A1174 508 510 529 C5' U A1175 528 530 549 C5' U A1176 548 550 569 C5' A A1177 568 570 591 C5' G A1178 590 592 614 C5' A A1179 613 615 636 C5' A A1180 635 637 658 C5' G A1181 657 659 681 C5' C A1182 680 682 701 C5' A A1183 700 702 723 C5' G A1184 722 724 746 C5' C A1185 745 747 766 C5' C A1186 765 767 786 C5' A A1187 785 787 808 C5' U A1188 807 809 828 C5' C A1189 827 829 848 C5' C A1190 847 849 868 C5' U A1191 867 869 888 C5' U A1192 887 889 908 C5' U A1193 907 909 928 C5' A A1194 927 929 950 C5' A A1195 949 951 972 C5' A A1196 971 973 994 C5' G A1197 993 995 1017 C5' A A1198 1016 1018 1039 C5' G A1199 1038 1040 1062 C5' U A1200 1061 1063 1082 C5' G A1201 1081 1083 1105 C5' C A1202 1104 1106 1125 C5' G A1203 1124 1126 1148 C5' U A1204 1147 1149 1168 C5' A A1205 1167 1169 1190 C5' A A1206 1189 1191 1212 C5' C A1207 1211 1213 1232 C5' A A1208 1231 1233 1254 C5' G A1209 1253 1255 1277 C5' C A1210 1276 1278 1297 C5' U A1211 1296 1298 1317 C5' C A1212 1316 1318 1337 C5' A A1213 1336 1338 1359 C5' C A1214 1358 1360 1379 C5' C A1215 1378 1380 1399 C5' C A1216 1398 1400 1419 C5' G A1217 1418 1420 1442 C5' U A1218 1441 1443 1462 C5' C A1219 1461 1463 1482 C5' G A1220 1481 1483 1505 C5' A A1221 1504 1506 1527 C5' G A1222 1526 1528 1550 C5' G A1223 1549 1551 1573 C5' C A1224 1572 1574 4037 C5' G D1151 4036 4038 4060 C5' C D1152 4059 4061 4080 C5' C D1153 4079 4081 4100 C5' U D1154 4099 4101 4120 C5' A D1155 4119 4121 4142 C5' A D1156 4141 4143 4164 C5' G D1157 4163 4165 4187 C5' A D1158 4186 4188 4209 C5' C D1159 4208 4210 4229 C5' A D1160 4228 4230 4251 C5' G D1161 4250 4252 4274 C5' C D1162 4273 4275 4294 C5' G D1163 4293 4295 4317 C5' G D1164 4316 4318 4340 C5' G D1165 4339 4341 4363 C5' G D1166 4362 4364 4386 C5' A D1167 4385 4387 4408 C5' G D1168 4407 4409 4431 C5' G D1169 4430 4432 4454 C5' U D1170 4453 4455 4474 C5' U D1171 4473 4475 4494 C5' G D1172 4493 4495 4517 C5' G D1173 4516 4518 4540 C5' C D1174 4539 4541 4560 C5' U D1175 4559 4561 4580 C5' U D1176 4579 4581 4600 C5' A D1177 4599 4601 4622 C5' G D1178 4621 4623 4645 C5' A D1179 4644 4646 4667 C5' A D1180 4666 4668 4689 C5' G D1181 4688 4690 4712 C5' C D1182 4711 4713 4732 C5' A D1183 4731 4733 4754 C5' G D1184 4753 4755 4777 C5' C D1185 4776 4778 4797 C5' C D1186 4796 4798 4817 C5' A D1187 4816 4818 4839 C5' U D1188 4838 4840 4859 C5' C D1189 4858 4860 4879 C5' C D1190 4878 4880 4899 C5' U D1191 4898 4900 4919 C5' U D1192 4918 4920 4939 C5' U D1193 4938 4940 4959 C5' A D1194 4958 4960 4981 C5' A D1195 4980 4982 5003 C5' A D1196 5002 5004 5025 C5' G D1197 5024 5026 5048 C5' A D1198 5047 5049 5070 C5' G D1199 5069 5071 5093 C5' U D1200 5092 5094 5113 C5' G D1201 5112 5114 5136 C5' C D1202 5135 5137 5156 C5' G D1203 5155 5157 5179 C5' U D1204 5178 5180 5199 C5' A D1205 5198 5200 5221 C5' A D1206 5220 5222 5243 C5' C D1207 5242 5244 5263 C5' A D1208 5262 5264 5285 C5' G D1209 5284 5286 5308 C5' C D1210 5307 5309 5328 C5' U D1211 5327 5329 5348 C5' C D1212 5347 5349 5368 C5' A D1213 5367 5369 5390 C5' C D1214 5389 5391 5410 C5' C D1215 5409 5411 5430 C5' C D1216 5429 5431 5450 C5' G D1217 5449 5451 5473 C5' U D1218 5472 5474 5493 C5' C D1219 5492 5494 5513 C5' G D1220 5512 5514 5536 C5' A D1221 5535 5537 5558 C5' G D1222 5557 5559 5581 C5' G D1223 5580 5582 5604 C5' C D1224 5603 5605 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 2 P G A1151 OK OK 3 4 5 25 P C A1152 distorted distorted 10 26 27 28 45 P C A1153 distorted distorted 33 46 47 48 65 P U A1154 distorted distorted 53 66 67 68 85 P A A1155 distorted distorted 73 86 87 88 107 P A A1156 distorted distorted 93 108 109 110 129 P G A1157 distorted distorted 115 130 131 132 152 P A A1158 distorted distorted 137 153 154 155 174 P C A1159 distorted distorted 160 175 176 177 194 P A A1160 distorted distorted 182 195 196 197 216 P G A1161 distorted distorted 202 217 218 219 239 P C A1162 distorted distorted 224 240 241 242 259 P G A1163 distorted distorted 247 260 261 262 282 P G A1164 distorted distorted 267 283 284 285 305 P G A1165 distorted distorted 290 306 307 308 328 P G A1166 distorted distorted 313 329 330 331 351 P A A1167 distorted distorted 336 352 353 354 373 P G A1168 distorted distorted 359 374 375 376 396 P G A1169 distorted distorted 381 397 398 399 419 P U A1170 distorted distorted 404 420 421 422 439 P U A1171 distorted distorted 427 440 441 442 459 P G A1172 distorted distorted 447 460 461 462 482 P G A1173 distorted distorted 467 483 484 485 505 P C A1174 distorted distorted 490 506 507 508 525 P U A1175 distorted distorted 513 526 527 528 545 P U A1176 distorted distorted 533 546 547 548 565 P A A1177 distorted distorted 553 566 567 568 587 P G A1178 distorted distorted 573 588 589 590 610 P A A1179 distorted distorted 595 611 612 613 632 P A A1180 distorted distorted 618 633 634 635 654 P G A1181 distorted distorted 640 655 656 657 677 P C A1182 distorted distorted 662 678 679 680 697 P A A1183 distorted distorted 685 698 699 700 719 P G A1184 distorted distorted 705 720 721 722 742 P C A1185 distorted distorted 727 743 744 745 762 P C A1186 distorted distorted 750 763 764 765 782 P A A1187 distorted distorted 770 783 784 785 804 P U A1188 distorted distorted 790 805 806 807 824 P C A1189 distorted distorted 812 825 826 827 844 P C A1190 distorted distorted 832 845 846 847 864 P U A1191 distorted distorted 852 865 866 867 884 P U A1192 distorted distorted 872 885 886 887 904 P U A1193 distorted distorted 892 905 906 907 924 P A A1194 distorted distorted 912 925 926 927 946 P A A1195 distorted distorted 932 947 948 949 968 P A A1196 distorted distorted 954 969 970 971 990 P G A1197 distorted distorted 976 991 992 993 1013 P A A1198 distorted distorted 998 1014 1015 1016 1035 P G A1199 distorted distorted 1021 1036 1037 1038 1058 P U A1200 distorted distorted 1043 1059 1060 1061 1078 P G A1201 distorted distorted 1066 1079 1080 1081 1101 P C A1202 distorted distorted 1086 1102 1103 1104 1121 P G A1203 distorted distorted 1109 1122 1123 1124 1144 P U A1204 distorted distorted 1129 1145 1146 1147 1164 P A A1205 distorted distorted 1152 1165 1166 1167 1186 P A A1206 distorted distorted 1172 1187 1188 1189 1208 P C A1207 distorted distorted 1194 1209 1210 1211 1228 P A A1208 distorted distorted 1216 1229 1230 1231 1250 P G A1209 distorted distorted 1236 1251 1252 1253 1273 P C A1210 distorted distorted 1258 1274 1275 1276 1293 P U A1211 distorted distorted 1281 1294 1295 1296 1313 P C A1212 distorted distorted 1301 1314 1315 1316 1333 P A A1213 distorted distorted 1321 1334 1335 1336 1355 P C A1214 distorted distorted 1341 1356 1357 1358 1375 P C A1215 distorted distorted 1363 1376 1377 1378 1395 P C A1216 distorted distorted 1383 1396 1397 1398 1415 P G A1217 distorted distorted 1403 1416 1417 1418 1438 P U A1218 distorted distorted 1423 1439 1440 1441 1458 P C A1219 distorted distorted 1446 1459 1460 1461 1478 P G A1220 distorted distorted 1466 1479 1480 1481 1501 P A A1221 distorted distorted 1486 1502 1503 1504 1523 P G A1222 distorted distorted 1509 1524 1525 1526 1546 P G A1223 distorted distorted 1531 1547 1548 1549 1569 P C A1224 distorted distorted 1554 1570 1571 1572 4033 P G D1151 OK OK 4034 4035 4036 4056 P C D1152 distorted distorted 4041 4057 4058 4059 4076 P C D1153 distorted distorted 4064 4077 4078 4079 4096 P U D1154 distorted distorted 4084 4097 4098 4099 4116 P A D1155 distorted distorted 4104 4117 4118 4119 4138 P A D1156 distorted distorted 4124 4139 4140 4141 4160 P G D1157 distorted distorted 4146 4161 4162 4163 4183 P A D1158 distorted distorted 4168 4184 4185 4186 4205 P C D1159 distorted distorted 4191 4206 4207 4208 4225 P A D1160 distorted distorted 4213 4226 4227 4228 4247 P G D1161 distorted distorted 4233 4248 4249 4250 4270 P C D1162 distorted distorted 4255 4271 4272 4273 4290 P G D1163 distorted distorted 4278 4291 4292 4293 4313 P G D1164 distorted distorted 4298 4314 4315 4316 4336 P G D1165 distorted distorted 4321 4337 4338 4339 4359 P G D1166 distorted distorted 4344 4360 4361 4362 4382 P A D1167 distorted distorted 4367 4383 4384 4385 4404 P G D1168 distorted distorted 4390 4405 4406 4407 4427 P G D1169 distorted distorted 4412 4428 4429 4430 4450 P U D1170 distorted distorted 4435 4451 4452 4453 4470 P U D1171 distorted distorted 4458 4471 4472 4473 4490 P G D1172 distorted distorted 4478 4491 4492 4493 4513 P G D1173 distorted distorted 4498 4514 4515 4516 4536 P C D1174 distorted distorted 4521 4537 4538 4539 4556 P U D1175 distorted distorted 4544 4557 4558 4559 4576 P U D1176 distorted distorted 4564 4577 4578 4579 4596 P A D1177 distorted distorted 4584 4597 4598 4599 4618 P G D1178 distorted distorted 4604 4619 4620 4621 4641 P A D1179 distorted distorted 4626 4642 4643 4644 4663 P A D1180 distorted distorted 4649 4664 4665 4666 4685 P G D1181 distorted distorted 4671 4686 4687 4688 4708 P C D1182 distorted distorted 4693 4709 4710 4711 4728 P A D1183 distorted distorted 4716 4729 4730 4731 4750 P G D1184 distorted distorted 4736 4751 4752 4753 4773 P C D1185 distorted distorted 4758 4774 4775 4776 4793 P C D1186 distorted distorted 4781 4794 4795 4796 4813 P A D1187 distorted distorted 4801 4814 4815 4816 4835 P U D1188 distorted distorted 4821 4836 4837 4838 4855 P C D1189 distorted distorted 4843 4856 4857 4858 4875 P C D1190 distorted distorted 4863 4876 4877 4878 4895 P U D1191 distorted distorted 4883 4896 4897 4898 4915 P U D1192 distorted distorted 4903 4916 4917 4918 4935 P U D1193 distorted distorted 4923 4936 4937 4938 4955 P A D1194 distorted distorted 4943 4956 4957 4958 4977 P A D1195 distorted distorted 4963 4978 4979 4980 4999 P A D1196 distorted distorted 4985 5000 5001 5002 5021 P G D1197 distorted distorted 5007 5022 5023 5024 5044 P A D1198 distorted distorted 5029 5045 5046 5047 5066 P G D1199 distorted distorted 5052 5067 5068 5069 5089 P U D1200 distorted distorted 5074 5090 5091 5092 5109 P G D1201 distorted distorted 5097 5110 5111 5112 5132 P C D1202 distorted distorted 5117 5133 5134 5135 5152 P G D1203 distorted distorted 5140 5153 5154 5155 5175 P U D1204 distorted distorted 5160 5176 5177 5178 5195 P A D1205 distorted distorted 5183 5196 5197 5198 5217 P A D1206 distorted distorted 5203 5218 5219 5220 5239 P C D1207 distorted distorted 5225 5240 5241 5242 5259 P A D1208 distorted distorted 5247 5260 5261 5262 5281 P G D1209 distorted distorted 5267 5282 5283 5284 5304 P C D1210 distorted distorted 5289 5305 5306 5307 5324 P U D1211 distorted distorted 5312 5325 5326 5327 5344 P C D1212 distorted distorted 5332 5345 5346 5347 5364 P A D1213 distorted distorted 5352 5365 5366 5367 5386 P C D1214 distorted distorted 5372 5387 5388 5389 5406 P C D1215 distorted distorted 5394 5407 5408 5409 5426 P C D1216 distorted distorted 5414 5427 5428 5429 5446 P G D1217 distorted distorted 5434 5447 5448 5449 5469 P U D1218 distorted distorted 5454 5470 5471 5472 5489 P C D1219 distorted distorted 5477 5490 5491 5492 5509 P G D1220 distorted distorted 5497 5510 5511 5512 5532 P A D1221 distorted distorted 5517 5533 5534 5535 5554 P G D1222 distorted distorted 5540 5555 5556 5557 5577 P G D1223 distorted distorted 5562 5578 5579 5580 5600 P C D1224 distorted distorted 5585 5601 5602 5603 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