ID code: '5BTP' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 12 C1' G B 6 beta 7 13 10 35 C1' U B 7 beta 30 36 33 55 C1' U B 8 beta 50 56 53 75 C1' A B 9 beta 70 76 73 97 C1' U B 10 beta 92 98 95 117 C1' A B 11 beta 112 118 115 139 C1' U B 12 beta 134 140 137 159 C1' G B 13 beta 154 160 157 182 C1' A B 14 beta 177 183 180 204 C1' C B 15 beta 199 205 202 224 C1' U B 16 beta 219 225 222 244 C1' G B 17 beta 239 245 242 267 C1' A B 18 beta 262 268 265 289 C1' C B 19 beta 284 290 287 309 C1' G B 20 beta 304 310 307 332 C1' G B 21 beta 327 333 330 355 C1' A B 22 beta 350 356 353 377 C1' A B 23 beta 372 378 375 399 C1' C B 24 beta 394 400 397 419 C1' G B 25 beta 414 420 417 442 C1' U B 26 beta 437 443 440 462 C1' G B 27 beta 457 463 460 485 C1' G B 28 beta 480 486 483 508 C1' A B 29 beta 503 509 506 530 C1' A B 30 beta 525 531 528 552 C1' U B 31 beta 547 553 550 572 C1' U B 32 beta 567 573 570 592 C1' A B 33 beta 587 593 590 614 C1' A B 34 beta 609 615 612 636 C1' C B 35 beta 631 637 634 656 C1' C B 36 beta 651 657 654 676 C1' A B 37 beta 671 677 674 698 C1' C B 38 beta 693 699 696 718 C1' A B 39 beta 713 719 716 740 C1' U B 40 beta 735 741 738 760 C1' G B 41 beta 755 761 758 783 C1' A B 42 beta 778 784 781 805 C1' A B 43 beta 800 806 803 827 C1' G B 44 beta 822 828 825 850 C1' U B 45 beta 845 851 848 870 C1' A B 46 beta 865 871 868 892 C1' U B 47 beta 887 893 890 912 C1' A B 48 beta 907 913 910 934 C1' A B 49 beta 929 935 932 956 C1' A B 58 beta 951 957 954 978 C1' U B 59 beta 973 979 976 998 C1' G B 60 beta 993 999 996 1021 C1' C B 61 beta 1016 1022 1019 1041 C1' C B 62 beta 1036 1042 1039 1061 C1' G B 63 beta 1056 1062 1059 1084 C1' A B 64 beta 1079 1085 1082 1106 C1' C B 65 beta 1101 1107 1104 1126 C1' C B 66 beta 1121 1127 1124 1146 C1' G B 67 beta 1141 1147 1144 1169 C1' U B 68 beta 1164 1170 1167 1189 C1' C B 69 beta 1184 1190 1187 1209 C1' U B 70 beta 1204 1210 1207 1229 C1' G B 71 beta 1224 1230 1227 1252 C1' G B 72 beta 1247 1253 1250 1275 C1' G B 73 beta 1270 1276 1273 1298 C1' C B 74 beta 1293 1299 1296 1318 C1' G B 75 beta 1313 1319 1316 1339 C1' G A 6 beta 1334 1340 1337 1362 C1' U A 7 beta 1357 1363 1360 1382 C1' U A 8 beta 1377 1383 1380 1402 C1' A A 9 beta 1397 1403 1400 1424 C1' U A 10 beta 1419 1425 1422 1444 C1' A A 11 beta 1439 1445 1442 1466 C1' U A 12 beta 1461 1467 1464 1486 C1' G A 13 beta 1481 1487 1484 1509 C1' A A 14 beta 1504 1510 1507 1531 C1' C A 15 beta 1526 1532 1529 1551 C1' U A 16 beta 1546 1552 1549 1571 C1' G A 17 beta 1566 1572 1569 1594 C1' A A 18 beta 1589 1595 1592 1616 C1' C A 19 beta 1611 1617 1614 1636 C1' G A 20 beta 1631 1637 1634 1659 C1' G A 21 beta 1654 1660 1657 1682 C1' A A 22 beta 1677 1683 1680 1704 C1' A A 23 beta 1699 1705 1702 1726 C1' C A 24 beta 1721 1727 1724 1746 C1' G A 25 beta 1741 1747 1744 1769 C1' U A 26 beta 1764 1770 1767 1789 C1' G A 27 beta 1784 1790 1787 1812 C1' G A 28 beta 1807 1813 1810 1835 C1' A A 29 beta 1830 1836 1833 1857 C1' A A 30 beta 1852 1858 1855 1879 C1' U A 31 beta 1874 1880 1877 1899 C1' U A 32 beta 1894 1900 1897 1919 C1' A A 33 beta 1914 1920 1917 1941 C1' A A 34 beta 1936 1942 1939 1963 C1' C A 35 beta 1958 1964 1961 1983 C1' C A 36 beta 1978 1984 1981 2003 C1' A A 37 beta 1998 2004 2001 2025 C1' C A 38 beta 2020 2026 2023 2045 C1' A A 39 beta 2040 2046 2043 2067 C1' U A 40 beta 2062 2068 2065 2087 C1' G A 41 beta 2082 2088 2085 2110 C1' A A 42 beta 2105 2111 2108 2132 C1' A A 43 beta 2127 2133 2130 2154 C1' G A 44 beta 2149 2155 2152 2177 C1' U A 45 beta 2172 2178 2175 2197 C1' A A 46 beta 2192 2198 2195 2219 C1' U A 47 beta 2214 2220 2217 2239 C1' A A 48 beta 2234 2240 2237 2261 C1' A A 49 beta 2256 2262 2259 2283 C1' C A 50 beta 2278 2284 2281 2303 C1' G A 51 beta 2298 2304 2301 2323 C1' G A 60 beta 2318 2324 2321 2346 C1' C A 61 beta 2341 2347 2344 2366 C1' C A 62 beta 2361 2367 2364 2386 C1' G A 63 beta 2381 2387 2384 2409 C1' A A 64 beta 2404 2410 2407 2431 C1' C A 65 beta 2426 2432 2429 2451 C1' C A 66 beta 2446 2452 2449 2471 C1' G A 67 beta 2466 2472 2469 2494 C1' U A 68 beta 2489 2495 2492 2514 C1' C A 69 beta 2509 2515 2512 2534 C1' U A 70 beta 2529 2535 2532 2554 C1' G A 71 beta 2549 2555 2552 2577 C1' G A 72 beta 2572 2578 2575 2600 C1' G A 73 beta 2595 2601 2598 2623 C1' C A 74 beta 2618 2624 2621 2643 C1' G A 75 beta 2638 2644 2641 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 10 C2' G B 6 OK 12 8 11 33 C2' U B 7 OK 35 31 34 53 C2' U B 8 OK 55 51 54 73 C2' A B 9 OK 75 71 74 95 C2' U B 10 OK 97 93 96 115 C2' A B 11 OK 117 113 116 137 C2' U B 12 OK 139 135 138 157 C2' G B 13 OK 159 155 158 180 C2' A B 14 OK 182 178 181 202 C2' C B 15 OK 204 200 203 222 C2' U B 16 OK 224 220 223 242 C2' G B 17 OK 244 240 243 265 C2' A B 18 OK 267 263 266 287 C2' C B 19 OK 289 285 288 307 C2' G B 20 OK 309 305 308 330 C2' G B 21 OK 332 328 331 353 C2' A B 22 OK 355 351 354 375 C2' A B 23 OK 377 373 376 397 C2' C B 24 OK 399 395 398 417 C2' G B 25 OK 419 415 418 440 C2' U B 26 OK 442 438 441 460 C2' G B 27 OK 462 458 461 483 C2' G B 28 OK 485 481 484 506 C2' A B 29 OK 508 504 507 528 C2' A B 30 OK 530 526 529 550 C2' U B 31 OK 552 548 551 570 C2' U B 32 OK 572 568 571 590 C2' A B 33 OK 592 588 591 612 C2' A B 34 OK 614 610 613 634 C2' C B 35 OK 636 632 635 654 C2' C B 36 OK 656 652 655 674 C2' A B 37 OK 676 672 675 696 C2' C B 38 OK 698 694 697 716 C2' A B 39 OK 718 714 717 738 C2' U B 40 OK 740 736 739 758 C2' G B 41 OK 760 756 759 781 C2' A B 42 OK 783 779 782 803 C2' A B 43 OK 805 801 804 825 C2' G B 44 OK 827 823 826 848 C2' U B 45 OK 850 846 849 868 C2' A B 46 OK 870 866 869 890 C2' U B 47 OK 892 888 891 910 C2' A B 48 OK 912 908 911 932 C2' A B 49 OK 934 930 933 954 C2' A B 58 OK 956 952 955 976 C2' U B 59 OK 978 974 977 996 C2' G B 60 OK 998 994 997 1019 C2' C B 61 OK 1021 1017 1020 1039 C2' C B 62 OK 1041 1037 1040 1059 C2' G B 63 OK 1061 1057 1060 1082 C2' A B 64 OK 1084 1080 1083 1104 C2' C B 65 OK 1106 1102 1105 1124 C2' C B 66 OK 1126 1122 1125 1144 C2' G B 67 OK 1146 1142 1145 1167 C2' U B 68 OK 1169 1165 1168 1187 C2' C B 69 OK 1189 1185 1188 1207 C2' U B 70 OK 1209 1205 1208 1227 C2' G B 71 OK 1229 1225 1228 1250 C2' G B 72 OK 1252 1248 1251 1273 C2' G B 73 OK 1275 1271 1274 1296 C2' C B 74 OK 1298 1294 1297 1316 C2' G B 75 OK 1318 1314 1317 1337 C2' G A 6 OK 1339 1335 1338 1360 C2' U A 7 OK 1362 1358 1361 1380 C2' U A 8 OK 1382 1378 1381 1400 C2' A A 9 OK 1402 1398 1401 1422 C2' U A 10 OK 1424 1420 1423 1442 C2' A A 11 OK 1444 1440 1443 1464 C2' U A 12 OK 1466 1462 1465 1484 C2' G A 13 OK 1486 1482 1485 1507 C2' A A 14 OK 1509 1505 1508 1529 C2' C A 15 OK 1531 1527 1530 1549 C2' U A 16 OK 1551 1547 1550 1569 C2' G A 17 OK 1571 1567 1570 1592 C2' A A 18 OK 1594 1590 1593 1614 C2' C A 19 OK 1616 1612 1615 1634 C2' G A 20 OK 1636 1632 1635 1657 C2' G A 21 OK 1659 1655 1658 1680 C2' A A 22 OK 1682 1678 1681 1702 C2' A A 23 OK 1704 1700 1703 1724 C2' C A 24 OK 1726 1722 1725 1744 C2' G A 25 OK 1746 1742 1745 1767 C2' U A 26 OK 1769 1765 1768 1787 C2' G A 27 OK 1789 1785 1788 1810 C2' G A 28 OK 1812 1808 1811 1833 C2' A A 29 OK 1835 1831 1834 1855 C2' A A 30 OK 1857 1853 1856 1877 C2' U A 31 OK 1879 1875 1878 1897 C2' U A 32 OK 1899 1895 1898 1917 C2' A A 33 OK 1919 1915 1918 1939 C2' A A 34 OK 1941 1937 1940 1961 C2' C A 35 OK 1963 1959 1962 1981 C2' C A 36 OK 1983 1979 1982 2001 C2' A A 37 OK 2003 1999 2002 2023 C2' C A 38 OK 2025 2021 2024 2043 C2' A A 39 OK 2045 2041 2044 2065 C2' U A 40 OK 2067 2063 2066 2085 C2' G A 41 OK 2087 2083 2086 2108 C2' A A 42 OK 2110 2106 2109 2130 C2' A A 43 OK 2132 2128 2131 2152 C2' G A 44 OK 2154 2150 2153 2175 C2' U A 45 OK 2177 2173 2176 2195 C2' A A 46 OK 2197 2193 2196 2217 C2' U A 47 OK 2219 2215 2218 2237 C2' A A 48 OK 2239 2235 2238 2259 C2' A A 49 OK 2261 2257 2260 2281 C2' C A 50 OK 2283 2279 2282 2301 C2' G A 51 OK 2303 2299 2302 2321 C2' G A 60 OK 2323 2319 2322 2344 C2' C A 61 OK 2346 2342 2345 2364 C2' C A 62 OK 2366 2362 2365 2384 C2' G A 63 OK 2386 2382 2385 2407 C2' A A 64 OK 2409 2405 2408 2429 C2' C A 65 OK 2431 2427 2430 2449 C2' C A 66 OK 2451 2447 2450 2469 C2' G A 67 OK 2471 2467 2470 2492 C2' U A 68 OK 2494 2490 2493 2512 C2' C A 69 OK 2514 2510 2513 2532 C2' U A 70 OK 2534 2530 2533 2552 C2' G A 71 OK 2554 2550 2553 2575 C2' G A 72 OK 2577 2573 2576 2598 C2' G A 73 OK 2600 2596 2599 2621 C2' C A 74 OK 2623 2619 2622 2641 C2' G A 75 OK 2643 2639 2642 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 8 C3' G B 6 OK 6 9 10 31 C3' U B 7 OK 29 32 33 51 C3' U B 8 OK 49 52 53 71 C3' A B 9 OK 69 72 73 93 C3' U B 10 OK 91 94 95 113 C3' A B 11 OK 111 114 115 135 C3' U B 12 OK 133 136 137 155 C3' G B 13 OK 153 156 157 178 C3' A B 14 OK 176 179 180 200 C3' C B 15 OK 198 201 202 220 C3' U B 16 OK 218 221 222 240 C3' G B 17 OK 238 241 242 263 C3' A B 18 OK 261 264 265 285 C3' C B 19 OK 283 286 287 305 C3' G B 20 OK 303 306 307 328 C3' G B 21 OK 326 329 330 351 C3' A B 22 OK 349 352 353 373 C3' A B 23 OK 371 374 375 395 C3' C B 24 OK 393 396 397 415 C3' G B 25 OK 413 416 417 438 C3' U B 26 OK 436 439 440 458 C3' G B 27 OK 456 459 460 481 C3' G B 28 OK 479 482 483 504 C3' A B 29 OK 502 505 506 526 C3' A B 30 OK 524 527 528 548 C3' U B 31 OK 546 549 550 568 C3' U B 32 OK 566 569 570 588 C3' A B 33 OK 586 589 590 610 C3' A B 34 OK 608 611 612 632 C3' C B 35 OK 630 633 634 652 C3' C B 36 OK 650 653 654 672 C3' A B 37 OK 670 673 674 694 C3' C B 38 OK 692 695 696 714 C3' A B 39 OK 712 715 716 736 C3' U B 40 OK 734 737 738 756 C3' G B 41 OK 754 757 758 779 C3' A B 42 OK 777 780 781 801 C3' A B 43 OK 799 802 803 823 C3' G B 44 OK 821 824 825 846 C3' U B 45 OK 844 847 848 866 C3' A B 46 OK 864 867 868 888 C3' U B 47 OK 886 889 890 908 C3' A B 48 OK 906 909 910 930 C3' A B 49 OK 928 931 932 952 C3' A B 58 OK 950 953 954 974 C3' U B 59 OK 972 975 976 994 C3' G B 60 OK 992 995 996 1017 C3' C B 61 OK 1015 1018 1019 1037 C3' C B 62 OK 1035 1038 1039 1057 C3' G B 63 OK 1055 1058 1059 1080 C3' A B 64 OK 1078 1081 1082 1102 C3' C B 65 OK 1100 1103 1104 1122 C3' C B 66 OK 1120 1123 1124 1142 C3' G B 67 OK 1140 1143 1144 1165 C3' U B 68 OK 1163 1166 1167 1185 C3' C B 69 OK 1183 1186 1187 1205 C3' U B 70 OK 1203 1206 1207 1225 C3' G B 71 OK 1223 1226 1227 1248 C3' G B 72 OK 1246 1249 1250 1271 C3' G B 73 OK 1269 1272 1273 1294 C3' C B 74 OK 1292 1295 1296 1314 C3' G B 75 OK 1312 1315 1316 1335 C3' G A 6 OK 1333 1336 1337 1358 C3' U A 7 OK 1356 1359 1360 1378 C3' U A 8 OK 1376 1379 1380 1398 C3' A A 9 OK 1396 1399 1400 1420 C3' U A 10 OK 1418 1421 1422 1440 C3' A A 11 OK 1438 1441 1442 1462 C3' U A 12 OK 1460 1463 1464 1482 C3' G A 13 OK 1480 1483 1484 1505 C3' A A 14 OK 1503 1506 1507 1527 C3' C A 15 OK 1525 1528 1529 1547 C3' U A 16 OK 1545 1548 1549 1567 C3' G A 17 OK 1565 1568 1569 1590 C3' A A 18 OK 1588 1591 1592 1612 C3' C A 19 OK 1610 1613 1614 1632 C3' G A 20 OK 1630 1633 1634 1655 C3' G A 21 OK 1653 1656 1657 1678 C3' A A 22 OK 1676 1679 1680 1700 C3' A A 23 OK 1698 1701 1702 1722 C3' C A 24 OK 1720 1723 1724 1742 C3' G A 25 OK 1740 1743 1744 1765 C3' U A 26 OK 1763 1766 1767 1785 C3' G A 27 OK 1783 1786 1787 1808 C3' G A 28 OK 1806 1809 1810 1831 C3' A A 29 OK 1829 1832 1833 1853 C3' A A 30 OK 1851 1854 1855 1875 C3' U A 31 OK 1873 1876 1877 1895 C3' U A 32 OK 1893 1896 1897 1915 C3' A A 33 OK 1913 1916 1917 1937 C3' A A 34 OK 1935 1938 1939 1959 C3' C A 35 OK 1957 1960 1961 1979 C3' C A 36 OK 1977 1980 1981 1999 C3' A A 37 OK 1997 2000 2001 2021 C3' C A 38 OK 2019 2022 2023 2041 C3' A A 39 OK 2039 2042 2043 2063 C3' U A 40 OK 2061 2064 2065 2083 C3' G A 41 OK 2081 2084 2085 2106 C3' A A 42 OK 2104 2107 2108 2128 C3' A A 43 OK 2126 2129 2130 2150 C3' G A 44 OK 2148 2151 2152 2173 C3' U A 45 OK 2171 2174 2175 2193 C3' A A 46 OK 2191 2194 2195 2215 C3' U A 47 OK 2213 2216 2217 2235 C3' A A 48 OK 2233 2236 2237 2257 C3' A A 49 OK 2255 2258 2259 2279 C3' C A 50 OK 2277 2280 2281 2299 C3' G A 51 OK 2297 2300 2301 2319 C3' G A 60 OK 2317 2320 2321 2342 C3' C A 61 OK 2340 2343 2344 2362 C3' C A 62 OK 2360 2363 2364 2382 C3' G A 63 OK 2380 2383 2384 2405 C3' A A 64 OK 2403 2406 2407 2427 C3' C A 65 OK 2425 2428 2429 2447 C3' C A 66 OK 2445 2448 2449 2467 C3' G A 67 OK 2465 2468 2469 2490 C3' U A 68 OK 2488 2491 2492 2510 C3' C A 69 OK 2508 2511 2512 2530 C3' U A 70 OK 2528 2531 2532 2550 C3' G A 71 OK 2548 2551 2552 2573 C3' G A 72 OK 2571 2574 2575 2596 C3' G A 73 OK 2594 2597 2598 2619 C3' C A 74 OK 2617 2620 2621 2639 C3' G A 75 OK 2637 2640 2641 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 6 C4' G B 6 OK 8 5 7 29 C4' U B 7 OK 31 28 30 49 C4' U B 8 OK 51 48 50 69 C4' A B 9 OK 71 68 70 91 C4' U B 10 OK 93 90 92 111 C4' A B 11 OK 113 110 112 133 C4' U B 12 OK 135 132 134 153 C4' G B 13 OK 155 152 154 176 C4' A B 14 OK 178 175 177 198 C4' C B 15 OK 200 197 199 218 C4' U B 16 OK 220 217 219 238 C4' G B 17 OK 240 237 239 261 C4' A B 18 OK 263 260 262 283 C4' C B 19 OK 285 282 284 303 C4' G B 20 OK 305 302 304 326 C4' G B 21 OK 328 325 327 349 C4' A B 22 OK 351 348 350 371 C4' A B 23 OK 373 370 372 393 C4' C B 24 OK 395 392 394 413 C4' G B 25 OK 415 412 414 436 C4' U B 26 OK 438 435 437 456 C4' G B 27 OK 458 455 457 479 C4' G B 28 OK 481 478 480 502 C4' A B 29 OK 504 501 503 524 C4' A B 30 OK 526 523 525 546 C4' U B 31 OK 548 545 547 566 C4' U B 32 OK 568 565 567 586 C4' A B 33 OK 588 585 587 608 C4' A B 34 OK 610 607 609 630 C4' C B 35 OK 632 629 631 650 C4' C B 36 OK 652 649 651 670 C4' A B 37 OK 672 669 671 692 C4' C B 38 OK 694 691 693 712 C4' A B 39 OK 714 711 713 734 C4' U B 40 OK 736 733 735 754 C4' G B 41 OK 756 753 755 777 C4' A B 42 OK 779 776 778 799 C4' A B 43 OK 801 798 800 821 C4' G B 44 OK 823 820 822 844 C4' U B 45 OK 846 843 845 864 C4' A B 46 OK 866 863 865 886 C4' U B 47 OK 888 885 887 906 C4' A B 48 OK 908 905 907 928 C4' A B 49 OK 930 927 929 950 C4' A B 58 OK 952 949 951 972 C4' U B 59 OK 974 971 973 992 C4' G B 60 OK 994 991 993 1015 C4' C B 61 OK 1017 1014 1016 1035 C4' C B 62 OK 1037 1034 1036 1055 C4' G B 63 OK 1057 1054 1056 1078 C4' A B 64 OK 1080 1077 1079 1100 C4' C B 65 OK 1102 1099 1101 1120 C4' C B 66 OK 1122 1119 1121 1140 C4' G B 67 OK 1142 1139 1141 1163 C4' U B 68 OK 1165 1162 1164 1183 C4' C B 69 OK 1185 1182 1184 1203 C4' U B 70 OK 1205 1202 1204 1223 C4' G B 71 OK 1225 1222 1224 1246 C4' G B 72 OK 1248 1245 1247 1269 C4' G B 73 OK 1271 1268 1270 1292 C4' C B 74 OK 1294 1291 1293 1312 C4' G B 75 OK 1314 1311 1313 1333 C4' G A 6 OK 1335 1332 1334 1356 C4' U A 7 OK 1358 1355 1357 1376 C4' U A 8 OK 1378 1375 1377 1396 C4' A A 9 OK 1398 1395 1397 1418 C4' U A 10 OK 1420 1417 1419 1438 C4' A A 11 OK 1440 1437 1439 1460 C4' U A 12 OK 1462 1459 1461 1480 C4' G A 13 OK 1482 1479 1481 1503 C4' A A 14 OK 1505 1502 1504 1525 C4' C A 15 OK 1527 1524 1526 1545 C4' U A 16 OK 1547 1544 1546 1565 C4' G A 17 OK 1567 1564 1566 1588 C4' A A 18 OK 1590 1587 1589 1610 C4' C A 19 OK 1612 1609 1611 1630 C4' G A 20 OK 1632 1629 1631 1653 C4' G A 21 OK 1655 1652 1654 1676 C4' A A 22 OK 1678 1675 1677 1698 C4' A A 23 OK 1700 1697 1699 1720 C4' C A 24 OK 1722 1719 1721 1740 C4' G A 25 OK 1742 1739 1741 1763 C4' U A 26 OK 1765 1762 1764 1783 C4' G A 27 OK 1785 1782 1784 1806 C4' G A 28 OK 1808 1805 1807 1829 C4' A A 29 OK 1831 1828 1830 1851 C4' A A 30 OK 1853 1850 1852 1873 C4' U A 31 OK 1875 1872 1874 1893 C4' U A 32 OK 1895 1892 1894 1913 C4' A A 33 OK 1915 1912 1914 1935 C4' A A 34 OK 1937 1934 1936 1957 C4' C A 35 OK 1959 1956 1958 1977 C4' C A 36 OK 1979 1976 1978 1997 C4' A A 37 OK 1999 1996 1998 2019 C4' C A 38 OK 2021 2018 2020 2039 C4' A A 39 OK 2041 2038 2040 2061 C4' U A 40 OK 2063 2060 2062 2081 C4' G A 41 OK 2083 2080 2082 2104 C4' A A 42 OK 2106 2103 2105 2126 C4' A A 43 OK 2128 2125 2127 2148 C4' G A 44 OK 2150 2147 2149 2171 C4' U A 45 OK 2173 2170 2172 2191 C4' A A 46 OK 2193 2190 2192 2213 C4' U A 47 OK 2215 2212 2214 2233 C4' A A 48 OK 2235 2232 2234 2255 C4' A A 49 OK 2257 2254 2256 2277 C4' C A 50 OK 2279 2276 2278 2297 C4' G A 51 OK 2299 2296 2298 2317 C4' G A 60 OK 2319 2316 2318 2340 C4' C A 61 OK 2342 2339 2341 2360 C4' C A 62 OK 2362 2359 2361 2380 C4' G A 63 OK 2382 2379 2381 2403 C4' A A 64 OK 2405 2402 2404 2425 C4' C A 65 OK 2427 2424 2426 2445 C4' C A 66 OK 2447 2444 2446 2465 C4' G A 67 OK 2467 2464 2466 2488 C4' U A 68 OK 2490 2487 2489 2508 C4' C A 69 OK 2510 2507 2509 2528 C4' U A 70 OK 2530 2527 2529 2548 C4' G A 71 OK 2550 2547 2549 2571 C4' G A 72 OK 2573 2570 2572 2594 C4' G A 73 OK 2596 2593 2595 2617 C4' C A 74 OK 2619 2616 2618 2637 C4' G A 75 OK 2639 2636 2638 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 5 C5' G B 6 4 6 28 C5' U B 7 27 29 48 C5' U B 8 47 49 68 C5' A B 9 67 69 90 C5' U B 10 89 91 110 C5' A B 11 109 111 132 C5' U B 12 131 133 152 C5' G B 13 151 153 175 C5' A B 14 174 176 197 C5' C B 15 196 198 217 C5' U B 16 216 218 237 C5' G B 17 236 238 260 C5' A B 18 259 261 282 C5' C B 19 281 283 302 C5' G B 20 301 303 325 C5' G B 21 324 326 348 C5' A B 22 347 349 370 C5' A B 23 369 371 392 C5' C B 24 391 393 412 C5' G B 25 411 413 435 C5' U B 26 434 436 455 C5' G B 27 454 456 478 C5' G B 28 477 479 501 C5' A B 29 500 502 523 C5' A B 30 522 524 545 C5' U B 31 544 546 565 C5' U B 32 564 566 585 C5' A B 33 584 586 607 C5' A B 34 606 608 629 C5' C B 35 628 630 649 C5' C B 36 648 650 669 C5' A B 37 668 670 691 C5' C B 38 690 692 711 C5' A B 39 710 712 733 C5' U B 40 732 734 753 C5' G B 41 752 754 776 C5' A B 42 775 777 798 C5' A B 43 797 799 820 C5' G B 44 819 821 843 C5' U B 45 842 844 863 C5' A B 46 862 864 885 C5' U B 47 884 886 905 C5' A B 48 904 906 927 C5' A B 49 926 928 949 C5' A B 58 948 950 971 C5' U B 59 970 972 991 C5' G B 60 990 992 1014 C5' C B 61 1013 1015 1034 C5' C B 62 1033 1035 1054 C5' G B 63 1053 1055 1077 C5' A B 64 1076 1078 1099 C5' C B 65 1098 1100 1119 C5' C B 66 1118 1120 1139 C5' G B 67 1138 1140 1162 C5' U B 68 1161 1163 1182 C5' C B 69 1181 1183 1202 C5' U B 70 1201 1203 1222 C5' G B 71 1221 1223 1245 C5' G B 72 1244 1246 1268 C5' G B 73 1267 1269 1291 C5' C B 74 1290 1292 1311 C5' G B 75 1310 1312 1332 C5' G A 6 1331 1333 1355 C5' U A 7 1354 1356 1375 C5' U A 8 1374 1376 1395 C5' A A 9 1394 1396 1417 C5' U A 10 1416 1418 1437 C5' A A 11 1436 1438 1459 C5' U A 12 1458 1460 1479 C5' G A 13 1478 1480 1502 C5' A A 14 1501 1503 1524 C5' C A 15 1523 1525 1544 C5' U A 16 1543 1545 1564 C5' G A 17 1563 1565 1587 C5' A A 18 1586 1588 1609 C5' C A 19 1608 1610 1629 C5' G A 20 1628 1630 1652 C5' G A 21 1651 1653 1675 C5' A A 22 1674 1676 1697 C5' A A 23 1696 1698 1719 C5' C A 24 1718 1720 1739 C5' G A 25 1738 1740 1762 C5' U A 26 1761 1763 1782 C5' G A 27 1781 1783 1805 C5' G A 28 1804 1806 1828 C5' A A 29 1827 1829 1850 C5' A A 30 1849 1851 1872 C5' U A 31 1871 1873 1892 C5' U A 32 1891 1893 1912 C5' A A 33 1911 1913 1934 C5' A A 34 1933 1935 1956 C5' C A 35 1955 1957 1976 C5' C A 36 1975 1977 1996 C5' A A 37 1995 1997 2018 C5' C A 38 2017 2019 2038 C5' A A 39 2037 2039 2060 C5' U A 40 2059 2061 2080 C5' G A 41 2079 2081 2103 C5' A A 42 2102 2104 2125 C5' A A 43 2124 2126 2147 C5' G A 44 2146 2148 2170 C5' U A 45 2169 2171 2190 C5' A A 46 2189 2191 2212 C5' U A 47 2211 2213 2232 C5' A A 48 2231 2233 2254 C5' A A 49 2253 2255 2276 C5' C A 50 2275 2277 2296 C5' G A 51 2295 2297 2316 C5' G A 60 2315 2317 2339 C5' C A 61 2338 2340 2359 C5' C A 62 2358 2360 2379 C5' G A 63 2378 2380 2402 C5' A A 64 2401 2403 2424 C5' C A 65 2423 2425 2444 C5' C A 66 2443 2445 2464 C5' G A 67 2463 2465 2487 C5' U A 68 2486 2488 2507 C5' C A 69 2506 2508 2527 C5' U A 70 2526 2528 2547 C5' G A 71 2546 2548 2570 C5' G A 72 2569 2571 2593 C5' G A 73 2592 2594 2616 C5' C A 74 2615 2617 2636 C5' G A 75 2635 2637 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 1 P G B 6 distorted distorted 2 3 4 24 P U B 7 distorted distorted 9 25 26 27 44 P U B 8 distorted distorted 32 45 46 47 64 P A B 9 distorted distorted 52 65 66 67 86 P U B 10 distorted distorted 72 87 88 89 106 P A B 11 distorted distorted 94 107 108 109 128 P U B 12 distorted distorted 114 129 130 131 148 P G B 13 distorted distorted 136 149 150 151 171 P A B 14 distorted distorted 156 172 173 174 193 P C B 15 distorted distorted 179 194 195 196 213 P U B 16 distorted distorted 201 214 215 216 233 P G B 17 distorted distorted 221 234 235 236 256 P A B 18 distorted distorted 241 257 258 259 278 P C B 19 distorted distorted 264 279 280 281 298 P G B 20 distorted distorted 286 299 300 301 321 P G B 21 distorted distorted 306 322 323 324 344 P A B 22 distorted distorted 329 345 346 347 366 P A B 23 distorted distorted 352 367 368 369 388 P C B 24 distorted distorted 374 389 390 391 408 P G B 25 distorted distorted 396 409 410 411 431 P U B 26 distorted distorted 416 432 433 434 451 P G B 27 distorted distorted 439 452 453 454 474 P G B 28 distorted distorted 459 475 476 477 497 P A B 29 distorted distorted 482 498 499 500 519 P A B 30 distorted distorted 505 520 521 522 541 P U B 31 distorted distorted 527 542 543 544 561 P U B 32 distorted distorted 549 562 563 564 581 P A B 33 distorted distorted 569 582 583 584 603 P A B 34 distorted distorted 589 604 605 606 625 P C B 35 distorted distorted 611 626 627 628 645 P C B 36 distorted distorted 633 646 647 648 665 P A B 37 distorted distorted 653 666 667 668 687 P C B 38 distorted distorted 673 688 689 690 707 P A B 39 distorted distorted 695 708 709 710 729 P U B 40 distorted distorted 715 730 731 732 749 P G B 41 distorted distorted 737 750 751 752 772 P A B 42 distorted distorted 757 773 774 775 794 P A B 43 distorted distorted 780 795 796 797 816 P G B 44 distorted distorted 802 817 818 819 839 P U B 45 distorted distorted 824 840 841 842 859 P A B 46 distorted distorted 847 860 861 862 881 P U B 47 distorted distorted 867 882 883 884 901 P A B 48 distorted distorted 889 902 903 904 923 P A B 49 distorted distorted 909 924 925 926 945 P A B 58 distorted distorted 946 947 948 967 P U B 59 distorted distorted 953 968 969 970 987 P G B 60 distorted distorted 975 988 989 990 1010 P C B 61 distorted distorted 995 1011 1012 1013 1030 P C B 62 distorted distorted 1018 1031 1032 1033 1050 P G B 63 distorted distorted 1038 1051 1052 1053 1073 P A B 64 distorted distorted 1058 1074 1075 1076 1095 P C B 65 distorted distorted 1081 1096 1097 1098 1115 P C B 66 distorted distorted 1103 1116 1117 1118 1135 P G B 67 distorted distorted 1123 1136 1137 1138 1158 P U B 68 distorted distorted 1143 1159 1160 1161 1178 P C B 69 distorted distorted 1166 1179 1180 1181 1198 P U B 70 distorted distorted 1186 1199 1200 1201 1218 P G B 71 distorted distorted 1206 1219 1220 1221 1241 P G B 72 distorted distorted 1226 1242 1243 1244 1264 P G B 73 distorted distorted 1249 1265 1266 1267 1287 P C B 74 distorted distorted 1272 1288 1289 1290 1307 P G B 75 distorted distorted 1295 1308 1309 1310 1351 P U A 7 distorted distorted 1336 1352 1353 1354 1371 P U A 8 distorted distorted 1359 1372 1373 1374 1391 P A A 9 distorted distorted 1379 1392 1393 1394 1413 P U A 10 distorted distorted 1399 1414 1415 1416 1433 P A A 11 distorted distorted 1421 1434 1435 1436 1455 P U A 12 distorted distorted 1441 1456 1457 1458 1475 P G A 13 distorted distorted 1463 1476 1477 1478 1498 P A A 14 distorted distorted 1483 1499 1500 1501 1520 P C A 15 distorted distorted 1506 1521 1522 1523 1540 P U A 16 distorted distorted 1528 1541 1542 1543 1560 P G A 17 distorted distorted 1548 1561 1562 1563 1583 P A A 18 distorted distorted 1568 1584 1585 1586 1605 P C A 19 distorted distorted 1591 1606 1607 1608 1625 P G A 20 distorted distorted 1613 1626 1627 1628 1648 P G A 21 distorted distorted 1633 1649 1650 1651 1671 P A A 22 distorted distorted 1656 1672 1673 1674 1693 P A A 23 distorted distorted 1679 1694 1695 1696 1715 P C A 24 distorted distorted 1701 1716 1717 1718 1735 P G A 25 distorted distorted 1723 1736 1737 1738 1758 P U A 26 distorted distorted 1743 1759 1760 1761 1778 P G A 27 distorted distorted 1766 1779 1780 1781 1801 P G A 28 distorted distorted 1786 1802 1803 1804 1824 P A A 29 distorted distorted 1809 1825 1826 1827 1846 P A A 30 distorted distorted 1832 1847 1848 1849 1868 P U A 31 distorted distorted 1854 1869 1870 1871 1888 P U A 32 distorted distorted 1876 1889 1890 1891 1908 P A A 33 distorted distorted 1896 1909 1910 1911 1930 P A A 34 distorted distorted 1916 1931 1932 1933 1952 P C A 35 distorted distorted 1938 1953 1954 1955 1972 P C A 36 distorted distorted 1960 1973 1974 1975 1992 P A A 37 distorted distorted 1980 1993 1994 1995 2014 P C A 38 distorted distorted 2000 2015 2016 2017 2034 P A A 39 distorted distorted 2022 2035 2036 2037 2056 P U A 40 distorted distorted 2042 2057 2058 2059 2076 P G A 41 distorted distorted 2064 2077 2078 2079 2099 P A A 42 distorted distorted 2084 2100 2101 2102 2121 P A A 43 distorted distorted 2107 2122 2123 2124 2143 P G A 44 distorted distorted 2129 2144 2145 2146 2166 P U A 45 distorted distorted 2151 2167 2168 2169 2186 P A A 46 distorted distorted 2174 2187 2188 2189 2208 P U A 47 distorted distorted 2194 2209 2210 2211 2228 P A A 48 distorted distorted 2216 2229 2230 2231 2250 P A A 49 distorted distorted 2236 2251 2252 2253 2272 P C A 50 distorted distorted 2258 2273 2274 2275 2292 P G A 51 distorted distorted 2280 2293 2294 2295 2335 P C A 61 distorted distorted 2320 2336 2337 2338 2355 P C A 62 distorted distorted 2343 2356 2357 2358 2375 P G A 63 distorted distorted 2363 2376 2377 2378 2398 P A A 64 distorted distorted 2383 2399 2400 2401 2420 P C A 65 distorted distorted 2406 2421 2422 2423 2440 P C A 66 distorted distorted 2428 2441 2442 2443 2460 P G A 67 distorted distorted 2448 2461 2462 2463 2483 P U A 68 distorted distorted 2468 2484 2485 2486 2503 P C A 69 distorted distorted 2491 2504 2505 2506 2523 P U A 70 distorted distorted 2511 2524 2525 2526 2543 P G A 71 distorted distorted 2531 2544 2545 2546 2566 P G A 72 distorted distorted 2551 2567 2568 2569 2589 P G A 73 distorted distorted 2574 2590 2591 2592 2612 P C A 74 distorted distorted 2597 2613 2614 2615 2632 P G A 75 distorted distorted 2620 2633 2634 2635 2681 P AMZ B 108 2682 2684 2709 P AMZ A 106 2710 2712 ---------------------------------------------------------------------------------