ID code: '4YHW' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 2230 C1' A C 1 beta 2225 2231 2228 2252 C1' U C 2 beta 2247 2253 2250 2272 C1' C C 3 beta 2267 2273 2270 2292 C1' C C 4 beta 2287 2293 2290 2312 C1' U C 5 beta 2307 2313 2310 2332 C1' U C 6 beta 2327 2333 2330 2352 C1' A C 7 beta 2347 2353 2350 2374 C1' U C 8 beta 2369 2375 2372 2394 C1' G C 9 beta 2389 2395 2392 2417 C1' C C 10 beta 2412 2418 2415 2437 C1' A C 11 beta 2432 2438 2435 2459 C1' C C 12 beta 2454 2460 2457 2479 C1' G C 13 beta 2474 2480 2477 2502 C1' G C 14 beta 2497 2503 2500 2525 C1' G C 15 beta 2520 2526 2523 2548 C1' A C 16 beta 2543 2549 2546 2570 C1' A C 17 beta 2565 2571 2568 2593 C1' A D 1 beta 2588 2594 2591 2615 C1' U D 2 beta 2610 2616 2613 2635 C1' C D 3 beta 2630 2636 2633 2655 C1' C D 4 beta 2650 2656 2653 2675 C1' U D 5 beta 2670 2676 2673 2695 C1' U D 6 beta 2690 2696 2693 2715 C1' A D 7 beta 2710 2716 2713 2737 C1' U D 8 beta 2732 2738 2735 2757 C1' G D 9 beta 2752 2758 2755 2780 C1' C D 10 beta 2775 2781 2778 2800 C1' A D 11 beta 2795 2801 2798 2822 C1' C D 12 beta 2817 2823 2820 2842 C1' G D 13 beta 2837 2843 2840 2865 C1' G D 14 beta 2860 2866 2863 2888 C1' G D 15 beta 2883 2889 2886 2911 C1' A D 16 beta 2906 2912 2909 2933 C1' A D 17 beta 2928 2934 2931 2956 C1' U E 64 beta 2951 2957 2954 2976 C1' U E 65 beta 2971 2977 2974 2996 C1' C E 66 beta 2991 2997 2994 3016 C1' C E 67 beta 3011 3017 3014 3036 C1' C E 68 beta 3031 3037 3034 3056 C1' C E 69 beta 3051 3057 3054 3076 C1' U E 70 beta 3071 3077 3074 3096 C1' G E 71 beta 3091 3097 3094 3119 C1' C E 72 beta 3114 3120 3117 3139 C1' A E 73 beta 3134 3140 3137 3161 C1' U E 74 beta 3156 3162 3159 3181 C1' A E 75 beta 3176 3182 3179 3203 C1' A E 76 beta 3198 3204 3201 3225 C1' G E 77 beta 3220 3226 3223 3248 C1' G E 78 beta 3243 3249 3246 3271 C1' A E 79 beta 3266 3272 3269 3293 C1' U E 80 beta 3288 3294 3291 3313 C1' G E 81 beta 3308 3314 3311 3336 C1' A E 82 beta 3331 3337 3334 3358 C1' A E 83 beta 3353 3359 3356 3380 C1' C E 84 beta 3375 3381 3378 3400 C1' C E 85 beta 3395 3401 3398 3420 C1' G E 86 beta 3415 3421 3418 3443 C1' U E 87 beta 3438 3444 3441 3463 C1' U E 88 beta 3458 3464 3461 3483 C1' U E 89 beta 3478 3484 3481 3503 C1' U E 90 beta 3498 3504 3501 3524 C1' U F 64 beta 3519 3525 3522 3544 C1' U F 65 beta 3539 3545 3542 3564 C1' C F 66 beta 3559 3565 3562 3584 C1' C F 67 beta 3579 3585 3582 3604 C1' C F 68 beta 3599 3605 3602 3624 C1' C F 69 beta 3619 3625 3622 3644 C1' U F 70 beta 3639 3645 3642 3664 C1' G F 71 beta 3659 3665 3662 3687 C1' C F 72 beta 3682 3688 3685 3707 C1' A F 73 beta 3702 3708 3705 3729 C1' U F 74 beta 3724 3730 3727 3749 C1' A F 75 beta 3744 3750 3747 3771 C1' A F 76 beta 3766 3772 3769 3793 C1' G F 77 beta 3788 3794 3791 3816 C1' G F 78 beta 3811 3817 3814 3839 C1' A F 79 beta 3834 3840 3837 3861 C1' U F 80 beta 3856 3862 3859 3881 C1' G F 81 beta 3876 3882 3879 3904 C1' A F 82 beta 3899 3905 3902 3926 C1' A F 83 beta 3921 3927 3924 3948 C1' C F 84 beta 3943 3949 3946 3968 C1' C F 85 beta 3963 3969 3966 3988 C1' G F 86 beta 3983 3989 3986 4011 C1' U F 87 beta 4006 4012 4009 4031 C1' U F 88 beta 4026 4032 4029 4051 C1' U F 89 beta 4046 4052 4049 4071 C1' U F 90 beta 4066 4072 4069 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 2228 C2' A C 1 OK 2230 2226 2229 2250 C2' U C 2 OK 2252 2248 2251 2270 C2' C C 3 OK 2272 2268 2271 2290 C2' C C 4 OK 2292 2288 2291 2310 C2' U C 5 OK 2312 2308 2311 2330 C2' U C 6 OK 2332 2328 2331 2350 C2' A C 7 OK 2352 2348 2351 2372 C2' U C 8 OK 2374 2370 2373 2392 C2' G C 9 OK 2394 2390 2393 2415 C2' C C 10 OK 2417 2413 2416 2435 C2' A C 11 OK 2437 2433 2436 2457 C2' C C 12 OK 2459 2455 2458 2477 C2' G C 13 OK 2479 2475 2478 2500 C2' G C 14 OK 2502 2498 2501 2523 C2' G C 15 OK 2525 2521 2524 2546 C2' A C 16 OK 2548 2544 2547 2568 C2' A C 17 OK 2570 2566 2569 2591 C2' A D 1 OK 2593 2589 2592 2613 C2' U D 2 OK 2615 2611 2614 2633 C2' C D 3 OK 2635 2631 2634 2653 C2' C D 4 OK 2655 2651 2654 2673 C2' U D 5 OK 2675 2671 2674 2693 C2' U D 6 OK 2695 2691 2694 2713 C2' A D 7 OK 2715 2711 2714 2735 C2' U D 8 OK 2737 2733 2736 2755 C2' G D 9 OK 2757 2753 2756 2778 C2' C D 10 OK 2780 2776 2779 2798 C2' A D 11 OK 2800 2796 2799 2820 C2' C D 12 OK 2822 2818 2821 2840 C2' G D 13 OK 2842 2838 2841 2863 C2' G D 14 OK 2865 2861 2864 2886 C2' G D 15 OK 2888 2884 2887 2909 C2' A D 16 OK 2911 2907 2910 2931 C2' A D 17 OK 2933 2929 2932 2954 C2' U E 64 OK 2956 2952 2955 2974 C2' U E 65 OK 2976 2972 2975 2994 C2' C E 66 OK 2996 2992 2995 3014 C2' C E 67 OK 3016 3012 3015 3034 C2' C E 68 OK 3036 3032 3035 3054 C2' C E 69 OK 3056 3052 3055 3074 C2' U E 70 OK 3076 3072 3075 3094 C2' G E 71 OK 3096 3092 3095 3117 C2' C E 72 OK 3119 3115 3118 3137 C2' A E 73 OK 3139 3135 3138 3159 C2' U E 74 OK 3161 3157 3160 3179 C2' A E 75 OK 3181 3177 3180 3201 C2' A E 76 OK 3203 3199 3202 3223 C2' G E 77 OK 3225 3221 3224 3246 C2' G E 78 OK 3248 3244 3247 3269 C2' A E 79 OK 3271 3267 3270 3291 C2' U E 80 OK 3293 3289 3292 3311 C2' G E 81 OK 3313 3309 3312 3334 C2' A E 82 OK 3336 3332 3335 3356 C2' A E 83 OK 3358 3354 3357 3378 C2' C E 84 OK 3380 3376 3379 3398 C2' C E 85 OK 3400 3396 3399 3418 C2' G E 86 OK 3420 3416 3419 3441 C2' U E 87 OK 3443 3439 3442 3461 C2' U E 88 OK 3463 3459 3462 3481 C2' U E 89 OK 3483 3479 3482 3501 C2' U E 90 OK 3503 3499 3502 3522 C2' U F 64 OK 3524 3520 3523 3542 C2' U F 65 OK 3544 3540 3543 3562 C2' C F 66 OK 3564 3560 3563 3582 C2' C F 67 OK 3584 3580 3583 3602 C2' C F 68 OK 3604 3600 3603 3622 C2' C F 69 OK 3624 3620 3623 3642 C2' U F 70 OK 3644 3640 3643 3662 C2' G F 71 OK 3664 3660 3663 3685 C2' C F 72 OK 3687 3683 3686 3705 C2' A F 73 OK 3707 3703 3706 3727 C2' U F 74 OK 3729 3725 3728 3747 C2' A F 75 OK 3749 3745 3748 3769 C2' A F 76 OK 3771 3767 3770 3791 C2' G F 77 OK 3793 3789 3792 3814 C2' G F 78 OK 3816 3812 3815 3837 C2' A F 79 OK 3839 3835 3838 3859 C2' U F 80 OK 3861 3857 3860 3879 C2' G F 81 OK 3881 3877 3880 3902 C2' A F 82 OK 3904 3900 3903 3924 C2' A F 83 OK 3926 3922 3925 3946 C2' C F 84 OK 3948 3944 3947 3966 C2' C F 85 OK 3968 3964 3967 3986 C2' G F 86 OK 3988 3984 3987 4009 C2' U F 87 OK 4011 4007 4010 4029 C2' U F 88 OK 4031 4027 4030 4049 C2' U F 89 OK 4051 4047 4050 4069 C2' U F 90 OK 4071 4067 4070 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 2226 C3' A C 1 OK 2224 2227 2228 2248 C3' U C 2 OK 2246 2249 2250 2268 C3' C C 3 OK 2266 2269 2270 2288 C3' C C 4 OK 2286 2289 2290 2308 C3' U C 5 OK 2306 2309 2310 2328 C3' U C 6 OK 2326 2329 2330 2348 C3' A C 7 OK 2346 2349 2350 2370 C3' U C 8 OK 2368 2371 2372 2390 C3' G C 9 OK 2388 2391 2392 2413 C3' C C 10 OK 2411 2414 2415 2433 C3' A C 11 OK 2431 2434 2435 2455 C3' C C 12 OK 2453 2456 2457 2475 C3' G C 13 OK 2473 2476 2477 2498 C3' G C 14 OK 2496 2499 2500 2521 C3' G C 15 OK 2519 2522 2523 2544 C3' A C 16 OK 2542 2545 2546 2566 C3' A C 17 OK 2564 2567 2568 2589 C3' A D 1 OK 2587 2590 2591 2611 C3' U D 2 OK 2609 2612 2613 2631 C3' C D 3 OK 2629 2632 2633 2651 C3' C D 4 OK 2649 2652 2653 2671 C3' U D 5 OK 2669 2672 2673 2691 C3' U D 6 OK 2689 2692 2693 2711 C3' A D 7 OK 2709 2712 2713 2733 C3' U D 8 OK 2731 2734 2735 2753 C3' G D 9 OK 2751 2754 2755 2776 C3' C D 10 OK 2774 2777 2778 2796 C3' A D 11 OK 2794 2797 2798 2818 C3' C D 12 OK 2816 2819 2820 2838 C3' G D 13 OK 2836 2839 2840 2861 C3' G D 14 OK 2859 2862 2863 2884 C3' G D 15 OK 2882 2885 2886 2907 C3' A D 16 OK 2905 2908 2909 2929 C3' A D 17 OK 2927 2930 2931 2952 C3' U E 64 OK 2950 2953 2954 2972 C3' U E 65 OK 2970 2973 2974 2992 C3' C E 66 OK 2990 2993 2994 3012 C3' C E 67 OK 3010 3013 3014 3032 C3' C E 68 OK 3030 3033 3034 3052 C3' C E 69 OK 3050 3053 3054 3072 C3' U E 70 OK 3070 3073 3074 3092 C3' G E 71 OK 3090 3093 3094 3115 C3' C E 72 OK 3113 3116 3117 3135 C3' A E 73 OK 3133 3136 3137 3157 C3' U E 74 OK 3155 3158 3159 3177 C3' A E 75 OK 3175 3178 3179 3199 C3' A E 76 OK 3197 3200 3201 3221 C3' G E 77 OK 3219 3222 3223 3244 C3' G E 78 OK 3242 3245 3246 3267 C3' A E 79 OK 3265 3268 3269 3289 C3' U E 80 OK 3287 3290 3291 3309 C3' G E 81 OK 3307 3310 3311 3332 C3' A E 82 OK 3330 3333 3334 3354 C3' A E 83 OK 3352 3355 3356 3376 C3' C E 84 OK 3374 3377 3378 3396 C3' C E 85 OK 3394 3397 3398 3416 C3' G E 86 OK 3414 3417 3418 3439 C3' U E 87 OK 3437 3440 3441 3459 C3' U E 88 OK 3457 3460 3461 3479 C3' U E 89 OK 3477 3480 3481 3499 C3' U E 90 OK 3497 3500 3501 3520 C3' U F 64 OK 3518 3521 3522 3540 C3' U F 65 OK 3538 3541 3542 3560 C3' C F 66 OK 3558 3561 3562 3580 C3' C F 67 OK 3578 3581 3582 3600 C3' C F 68 OK 3598 3601 3602 3620 C3' C F 69 OK 3618 3621 3622 3640 C3' U F 70 OK 3638 3641 3642 3660 C3' G F 71 OK 3658 3661 3662 3683 C3' C F 72 OK 3681 3684 3685 3703 C3' A F 73 OK 3701 3704 3705 3725 C3' U F 74 OK 3723 3726 3727 3745 C3' A F 75 OK 3743 3746 3747 3767 C3' A F 76 OK 3765 3768 3769 3789 C3' G F 77 OK 3787 3790 3791 3812 C3' G F 78 OK 3810 3813 3814 3835 C3' A F 79 OK 3833 3836 3837 3857 C3' U F 80 OK 3855 3858 3859 3877 C3' G F 81 OK 3875 3878 3879 3900 C3' A F 82 OK 3898 3901 3902 3922 C3' A F 83 OK 3920 3923 3924 3944 C3' C F 84 OK 3942 3945 3946 3964 C3' C F 85 OK 3962 3965 3966 3984 C3' G F 86 OK 3982 3985 3986 4007 C3' U F 87 OK 4005 4008 4009 4027 C3' U F 88 OK 4025 4028 4029 4047 C3' U F 89 OK 4045 4048 4049 4067 C3' U F 90 OK 4065 4068 4069 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 2224 C4' A C 1 OK 2226 2223 2225 2246 C4' U C 2 OK 2248 2245 2247 2266 C4' C C 3 OK 2268 2265 2267 2286 C4' C C 4 OK 2288 2285 2287 2306 C4' U C 5 OK 2308 2305 2307 2326 C4' U C 6 OK 2328 2325 2327 2346 C4' A C 7 OK 2348 2345 2347 2368 C4' U C 8 OK 2370 2367 2369 2388 C4' G C 9 OK 2390 2387 2389 2411 C4' C C 10 OK 2413 2410 2412 2431 C4' A C 11 OK 2433 2430 2432 2453 C4' C C 12 OK 2455 2452 2454 2473 C4' G C 13 OK 2475 2472 2474 2496 C4' G C 14 OK 2498 2495 2497 2519 C4' G C 15 OK 2521 2518 2520 2542 C4' A C 16 OK 2544 2541 2543 2564 C4' A C 17 OK 2566 2563 2565 2587 C4' A D 1 OK 2589 2586 2588 2609 C4' U D 2 OK 2611 2608 2610 2629 C4' C D 3 OK 2631 2628 2630 2649 C4' C D 4 OK 2651 2648 2650 2669 C4' U D 5 OK 2671 2668 2670 2689 C4' U D 6 OK 2691 2688 2690 2709 C4' A D 7 OK 2711 2708 2710 2731 C4' U D 8 OK 2733 2730 2732 2751 C4' G D 9 OK 2753 2750 2752 2774 C4' C D 10 OK 2776 2773 2775 2794 C4' A D 11 OK 2796 2793 2795 2816 C4' C D 12 OK 2818 2815 2817 2836 C4' G D 13 OK 2838 2835 2837 2859 C4' G D 14 OK 2861 2858 2860 2882 C4' G D 15 OK 2884 2881 2883 2905 C4' A D 16 OK 2907 2904 2906 2927 C4' A D 17 OK 2929 2926 2928 2950 C4' U E 64 OK 2952 2949 2951 2970 C4' U E 65 OK 2972 2969 2971 2990 C4' C E 66 OK 2992 2989 2991 3010 C4' C E 67 OK 3012 3009 3011 3030 C4' C E 68 OK 3032 3029 3031 3050 C4' C E 69 OK 3052 3049 3051 3070 C4' U E 70 OK 3072 3069 3071 3090 C4' G E 71 OK 3092 3089 3091 3113 C4' C E 72 OK 3115 3112 3114 3133 C4' A E 73 OK 3135 3132 3134 3155 C4' U E 74 OK 3157 3154 3156 3175 C4' A E 75 OK 3177 3174 3176 3197 C4' A E 76 OK 3199 3196 3198 3219 C4' G E 77 OK 3221 3218 3220 3242 C4' G E 78 OK 3244 3241 3243 3265 C4' A E 79 OK 3267 3264 3266 3287 C4' U E 80 OK 3289 3286 3288 3307 C4' G E 81 OK 3309 3306 3308 3330 C4' A E 82 OK 3332 3329 3331 3352 C4' A E 83 OK 3354 3351 3353 3374 C4' C E 84 OK 3376 3373 3375 3394 C4' C E 85 OK 3396 3393 3395 3414 C4' G E 86 OK 3416 3413 3415 3437 C4' U E 87 OK 3439 3436 3438 3457 C4' U E 88 OK 3459 3456 3458 3477 C4' U E 89 OK 3479 3476 3478 3497 C4' U E 90 OK 3499 3496 3498 3518 C4' U F 64 OK 3520 3517 3519 3538 C4' U F 65 OK 3540 3537 3539 3558 C4' C F 66 OK 3560 3557 3559 3578 C4' C F 67 OK 3580 3577 3579 3598 C4' C F 68 OK 3600 3597 3599 3618 C4' C F 69 OK 3620 3617 3619 3638 C4' U F 70 OK 3640 3637 3639 3658 C4' G F 71 OK 3660 3657 3659 3681 C4' C F 72 OK 3683 3680 3682 3701 C4' A F 73 OK 3703 3700 3702 3723 C4' U F 74 OK 3725 3722 3724 3743 C4' A F 75 OK 3745 3742 3744 3765 C4' A F 76 OK 3767 3764 3766 3787 C4' G F 77 OK 3789 3786 3788 3810 C4' G F 78 OK 3812 3809 3811 3833 C4' A F 79 OK 3835 3832 3834 3855 C4' U F 80 OK 3857 3854 3856 3875 C4' G F 81 OK 3877 3874 3876 3898 C4' A F 82 OK 3900 3897 3899 3920 C4' A F 83 OK 3922 3919 3921 3942 C4' C F 84 OK 3944 3941 3943 3962 C4' C F 85 OK 3964 3961 3963 3982 C4' G F 86 OK 3984 3981 3983 4005 C4' U F 87 OK 4007 4004 4006 4025 C4' U F 88 OK 4027 4024 4026 4045 C4' U F 89 OK 4047 4044 4046 4065 C4' U F 90 OK 4067 4064 4066 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 2223 C5' A C 1 2222 2224 2245 C5' U C 2 2244 2246 2265 C5' C C 3 2264 2266 2285 C5' C C 4 2284 2286 2305 C5' U C 5 2304 2306 2325 C5' U C 6 2324 2326 2345 C5' A C 7 2344 2346 2367 C5' U C 8 2366 2368 2387 C5' G C 9 2386 2388 2410 C5' C C 10 2409 2411 2430 C5' A C 11 2429 2431 2452 C5' C C 12 2451 2453 2472 C5' G C 13 2471 2473 2495 C5' G C 14 2494 2496 2518 C5' G C 15 2517 2519 2541 C5' A C 16 2540 2542 2563 C5' A C 17 2562 2564 2586 C5' A D 1 2585 2587 2608 C5' U D 2 2607 2609 2628 C5' C D 3 2627 2629 2648 C5' C D 4 2647 2649 2668 C5' U D 5 2667 2669 2688 C5' U D 6 2687 2689 2708 C5' A D 7 2707 2709 2730 C5' U D 8 2729 2731 2750 C5' G D 9 2749 2751 2773 C5' C D 10 2772 2774 2793 C5' A D 11 2792 2794 2815 C5' C D 12 2814 2816 2835 C5' G D 13 2834 2836 2858 C5' G D 14 2857 2859 2881 C5' G D 15 2880 2882 2904 C5' A D 16 2903 2905 2926 C5' A D 17 2925 2927 2949 C5' U E 64 2948 2950 2969 C5' U E 65 2968 2970 2989 C5' C E 66 2988 2990 3009 C5' C E 67 3008 3010 3029 C5' C E 68 3028 3030 3049 C5' C E 69 3048 3050 3069 C5' U E 70 3068 3070 3089 C5' G E 71 3088 3090 3112 C5' C E 72 3111 3113 3132 C5' A E 73 3131 3133 3154 C5' U E 74 3153 3155 3174 C5' A E 75 3173 3175 3196 C5' A E 76 3195 3197 3218 C5' G E 77 3217 3219 3241 C5' G E 78 3240 3242 3264 C5' A E 79 3263 3265 3286 C5' U E 80 3285 3287 3306 C5' G E 81 3305 3307 3329 C5' A E 82 3328 3330 3351 C5' A E 83 3350 3352 3373 C5' C E 84 3372 3374 3393 C5' C E 85 3392 3394 3413 C5' G E 86 3412 3414 3436 C5' U E 87 3435 3437 3456 C5' U E 88 3455 3457 3476 C5' U E 89 3475 3477 3496 C5' U E 90 3495 3497 3517 C5' U F 64 3516 3518 3537 C5' U F 65 3536 3538 3557 C5' C F 66 3556 3558 3577 C5' C F 67 3576 3578 3597 C5' C F 68 3596 3598 3617 C5' C F 69 3616 3618 3637 C5' U F 70 3636 3638 3657 C5' G F 71 3656 3658 3680 C5' C F 72 3679 3681 3700 C5' A F 73 3699 3701 3722 C5' U F 74 3721 3723 3742 C5' A F 75 3741 3743 3764 C5' A F 76 3763 3765 3786 C5' G F 77 3785 3787 3809 C5' G F 78 3808 3810 3832 C5' A F 79 3831 3833 3854 C5' U F 80 3853 3855 3874 C5' G F 81 3873 3875 3897 C5' A F 82 3896 3898 3919 C5' A F 83 3918 3920 3941 C5' C F 84 3940 3942 3961 C5' C F 85 3960 3962 3981 C5' G F 86 3980 3982 4004 C5' U F 87 4003 4005 4024 C5' U F 88 4023 4025 4044 C5' U F 89 4043 4045 4064 C5' U F 90 4063 4065 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 2219 P A C 1 distorted distorted 2220 2221 2222 2241 P U C 2 distorted distorted 2227 2242 2243 2244 2261 P C C 3 distorted distorted 2249 2262 2263 2264 2281 P C C 4 distorted distorted 2269 2282 2283 2284 2301 P U C 5 distorted distorted 2289 2302 2303 2304 2321 P U C 6 distorted distorted 2309 2322 2323 2324 2341 P A C 7 distorted distorted 2329 2342 2343 2344 2363 P U C 8 distorted distorted 2349 2364 2365 2366 2383 P G C 9 distorted distorted 2371 2384 2385 2386 2406 P C C 10 distorted distorted 2391 2407 2408 2409 2426 P A C 11 distorted distorted 2414 2427 2428 2429 2448 P C C 12 distorted distorted 2434 2449 2450 2451 2468 P G C 13 distorted distorted 2456 2469 2470 2471 2491 P G C 14 distorted distorted 2476 2492 2493 2494 2514 P G C 15 distorted distorted 2499 2515 2516 2517 2537 P A C 16 distorted distorted 2522 2538 2539 2540 2559 P A C 17 distorted distorted 2545 2560 2561 2562 2582 P A D 1 distorted distorted 2583 2584 2585 2604 P U D 2 distorted distorted 2590 2605 2606 2607 2624 P C D 3 distorted distorted 2612 2625 2626 2627 2644 P C D 4 distorted distorted 2632 2645 2646 2647 2664 P U D 5 distorted distorted 2652 2665 2666 2667 2684 P U D 6 distorted distorted 2672 2685 2686 2687 2704 P A D 7 distorted distorted 2692 2705 2706 2707 2726 P U D 8 distorted distorted 2712 2727 2728 2729 2746 P G D 9 distorted distorted 2734 2747 2748 2749 2769 P C D 10 distorted distorted 2754 2770 2771 2772 2789 P A D 11 distorted distorted 2777 2790 2791 2792 2811 P C D 12 distorted distorted 2797 2812 2813 2814 2831 P G D 13 distorted distorted 2819 2832 2833 2834 2854 P G D 14 distorted distorted 2839 2855 2856 2857 2877 P G D 15 distorted distorted 2862 2878 2879 2880 2900 P A D 16 distorted distorted 2885 2901 2902 2903 2922 P A D 17 distorted distorted 2908 2923 2924 2925 2945 P U E 64 distorted distorted 2946 2947 2948 2965 P U E 65 distorted distorted 2953 2966 2967 2968 2985 P C E 66 distorted distorted 2973 2986 2987 2988 3005 P C E 67 distorted distorted 2993 3006 3007 3008 3025 P C E 68 distorted distorted 3013 3026 3027 3028 3045 P C E 69 distorted distorted 3033 3046 3047 3048 3065 P U E 70 distorted distorted 3053 3066 3067 3068 3085 P G E 71 distorted distorted 3073 3086 3087 3088 3108 P C E 72 distorted distorted 3093 3109 3110 3111 3128 P A E 73 distorted distorted 3116 3129 3130 3131 3150 P U E 74 distorted distorted 3136 3151 3152 3153 3170 P A E 75 distorted distorted 3158 3171 3172 3173 3192 P A E 76 distorted distorted 3178 3193 3194 3195 3214 P G E 77 distorted distorted 3200 3215 3216 3217 3237 P G E 78 distorted distorted 3222 3238 3239 3240 3260 P A E 79 distorted distorted 3245 3261 3262 3263 3282 P U E 80 distorted distorted 3268 3283 3284 3285 3302 P G E 81 distorted distorted 3290 3303 3304 3305 3325 P A E 82 distorted distorted 3310 3326 3327 3328 3347 P A E 83 distorted distorted 3333 3348 3349 3350 3369 P C E 84 distorted distorted 3355 3370 3371 3372 3389 P C E 85 distorted distorted 3377 3390 3391 3392 3409 P G E 86 distorted distorted 3397 3410 3411 3412 3432 P U E 87 distorted distorted 3417 3433 3434 3435 3452 P U E 88 distorted distorted 3440 3453 3454 3455 3472 P U E 89 distorted distorted 3460 3473 3474 3475 3492 P U E 90 distorted distorted 3480 3493 3494 3495 3513 P U F 64 distorted distorted 3514 3515 3516 3533 P U F 65 distorted distorted 3521 3534 3535 3536 3553 P C F 66 distorted distorted 3541 3554 3555 3556 3573 P C F 67 distorted distorted 3561 3574 3575 3576 3593 P C F 68 distorted distorted 3581 3594 3595 3596 3613 P C F 69 distorted distorted 3601 3614 3615 3616 3633 P U F 70 distorted distorted 3621 3634 3635 3636 3653 P G F 71 distorted distorted 3641 3654 3655 3656 3676 P C F 72 distorted distorted 3661 3677 3678 3679 3696 P A F 73 distorted distorted 3684 3697 3698 3699 3718 P U F 74 distorted distorted 3704 3719 3720 3721 3738 P A F 75 distorted distorted 3726 3739 3740 3741 3760 P A F 76 distorted distorted 3746 3761 3762 3763 3782 P G F 77 distorted distorted 3768 3783 3784 3785 3805 P G F 78 distorted distorted 3790 3806 3807 3808 3828 P A F 79 distorted distorted 3813 3829 3830 3831 3850 P U F 80 distorted distorted 3836 3851 3852 3853 3870 P G F 81 distorted distorted 3858 3871 3872 3873 3893 P A F 82 distorted distorted 3878 3894 3895 3896 3915 P A F 83 distorted distorted 3901 3916 3917 3918 3937 P C F 84 distorted distorted 3923 3938 3939 3940 3957 P C F 85 distorted distorted 3945 3958 3959 3960 3977 P G F 86 distorted distorted 3965 3978 3979 3980 4000 P U F 87 distorted distorted 3985 4001 4002 4003 4020 P U F 88 distorted distorted 4008 4021 4022 4023 4040 P U F 89 distorted distorted 4028 4041 4042 4043 4060 P U F 90 distorted distorted 4048 4061 4062 4063 ---------------------------------------------------------------------------------