ID code: '4Y1I' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 12 C1' A A 3 beta 7 13 10 34 C1' A A 4 beta 29 35 32 56 C1' A A 5 beta 51 57 54 78 C1' G A 6 beta 73 79 76 101 C1' G A 7 beta 96 102 99 124 C1' G A 8 beta 119 125 122 147 C1' G A 9 beta 142 148 145 170 C1' A A 10 beta 165 171 168 192 C1' G A 11 beta 187 193 190 215 C1' U A 12 beta 210 216 213 235 C1' A A 13 beta 230 236 233 257 C1' G A 14 beta 252 258 255 280 C1' C A 15 beta 275 281 278 300 C1' G A 16 beta 295 301 298 323 C1' U A 17 beta 318 324 321 343 C1' C A 18 beta 338 344 341 363 C1' G A 19 beta 358 364 361 386 C1' G A 20 beta 381 387 384 409 C1' G A 21 beta 404 410 407 432 C1' A A 22 beta 427 433 430 454 C1' A A 23 beta 449 455 452 476 C1' A A 24 beta 471 477 474 498 C1' C A 25 beta 493 499 496 518 C1' C A 26 beta 513 519 516 538 C1' G A 27 beta 533 539 536 561 C1' A A 28 beta 556 562 559 583 C1' A A 29 beta 578 584 581 605 C1' A A 30 beta 600 606 603 627 C1' C A 31 beta 622 628 625 647 C1' A A 32 beta 642 648 645 669 C1' A A 33 beta 664 670 667 691 C1' A A 34 beta 686 692 689 713 C1' G A 35 beta 708 714 711 736 C1' U A 36 beta 731 737 734 756 C1' C A 37 beta 751 757 754 776 C1' G A 38 beta 771 777 774 799 C1' U A 39 beta 794 800 797 819 C1' C A 40 beta 814 820 817 839 C1' A A 41 beta 834 840 837 861 C1' A A 42 beta 856 862 859 883 C1' U A 43 beta 878 884 881 903 C1' U A 44 beta 898 904 901 923 C1' C A 45 beta 918 924 921 943 C1' G A 46 beta 938 944 941 966 C1' U A 47 beta 961 967 964 986 C1' G A 48 beta 981 987 984 1009 C1' A A 49 beta 1004 1010 1007 1031 C1' G A 50 beta 1026 1032 1029 1054 C1' G A 51 beta 1049 1055 1052 1077 C1' A A 52 beta 1072 1078 1075 1099 C1' A A 53 beta 1094 1100 1097 1121 C1' A A 54 beta 1116 1122 1119 1143 C1' C A 55 beta 1138 1144 1141 1163 C1' U A 56 beta 1158 1164 1161 1183 C1' C A 57 beta 1178 1184 1181 1203 C1' A A 58 beta 1198 1204 1201 1225 C1' C A 59 beta 1220 1226 1223 1245 C1' C A 60 beta 1240 1246 1243 1265 C1' G A 61 beta 1260 1266 1263 1288 C1' G A 62 beta 1283 1289 1286 1311 C1' C A 63 beta 1306 1312 1309 1331 C1' U A 64 beta 1326 1332 1329 1351 C1' U A 65 beta 1346 1352 1349 1371 C1' U A 66 beta 1366 1372 1369 1391 C1' G A 67 beta 1386 1392 1389 1414 C1' U A 68 beta 1409 1415 1412 1434 C1' U A 69 beta 1429 1435 1432 1454 C1' G A 70 beta 1449 1455 1452 1477 C1' A A 71 beta 1472 1478 1475 1499 C1' C A 72 beta 1494 1500 1497 1519 C1' A A 73 beta 1514 1520 1517 1541 C1' U A 74 beta 1536 1542 1539 1561 C1' A A 75 beta 1556 1562 1559 1583 C1' C A 76 beta 1578 1584 1581 1603 C1' G A 77 beta 1598 1604 1601 1626 C1' A A 78 beta 1621 1627 1624 1648 C1' A A 79 beta 1643 1649 1646 1670 C1' A A 80 beta 1665 1671 1668 1692 C1' G A 81 beta 1687 1693 1690 1715 C1' U A 82 beta 1710 1716 1713 1735 C1' A A 83 beta 1730 1736 1733 1757 C1' U A 84 beta 1752 1758 1755 1777 C1' G A 85 beta 1772 1778 1775 1800 C1' U A 86 beta 1795 1801 1798 1820 C1' U A 87 beta 1815 1821 1818 1840 C1' U A 88 beta 1835 1841 1838 1860 C1' A A 89 beta 1855 1861 1858 1882 C1' G A 90 beta 1877 1883 1880 1905 C1' C A 91 beta 1900 1906 1903 1925 C1' A A 92 beta 1920 1926 1923 1947 C1' A A 93 beta 1942 1948 1945 1969 C1' G A 94 beta 1964 1970 1967 1992 C1' A A 95 beta 1987 1993 1990 2014 C1' C A 96 beta 2009 2015 2012 2034 C1' C A 97 beta 2029 2035 2032 2054 C1' U A 98 beta 2049 2055 2052 2074 C1' U A 99 beta 2069 2075 2072 2094 C1' U A 100 beta 2089 2095 2092 2114 C1' C A 101 beta 2109 2115 2112 2134 C1' C A 102 beta 2129 2135 2132 2155 C1' A B 3 beta 2150 2156 2153 2177 C1' A B 4 beta 2172 2178 2175 2199 C1' A B 5 beta 2194 2200 2197 2221 C1' G B 6 beta 2216 2222 2219 2244 C1' G B 7 beta 2239 2245 2242 2267 C1' G B 8 beta 2262 2268 2265 2290 C1' G B 9 beta 2285 2291 2288 2313 C1' A B 10 beta 2308 2314 2311 2335 C1' G B 11 beta 2330 2336 2333 2358 C1' U B 12 beta 2353 2359 2356 2378 C1' A B 13 beta 2373 2379 2376 2400 C1' G B 14 beta 2395 2401 2398 2423 C1' C B 15 beta 2418 2424 2421 2443 C1' G B 16 beta 2438 2444 2441 2466 C1' U B 17 beta 2461 2467 2464 2486 C1' C B 18 beta 2481 2487 2484 2506 C1' G B 19 beta 2501 2507 2504 2529 C1' G B 20 beta 2524 2530 2527 2552 C1' G B 21 beta 2547 2553 2550 2575 C1' A B 22 beta 2570 2576 2573 2597 C1' A B 23 beta 2592 2598 2595 2619 C1' A B 24 beta 2614 2620 2617 2641 C1' C B 25 beta 2636 2642 2639 2661 C1' C B 26 beta 2656 2662 2659 2681 C1' G B 27 beta 2676 2682 2679 2704 C1' A B 28 beta 2699 2705 2702 2726 C1' A B 29 beta 2721 2727 2724 2748 C1' A B 30 beta 2743 2749 2746 2770 C1' C B 31 beta 2765 2771 2768 2790 C1' A B 32 beta 2785 2791 2788 2812 C1' A B 33 beta 2807 2813 2810 2834 C1' A B 34 beta 2829 2835 2832 2856 C1' G B 35 beta 2851 2857 2854 2879 C1' U B 36 beta 2874 2880 2877 2899 C1' C B 37 beta 2894 2900 2897 2919 C1' G B 38 beta 2914 2920 2917 2942 C1' U B 39 beta 2937 2943 2940 2962 C1' C B 40 beta 2957 2963 2960 2982 C1' A B 41 beta 2977 2983 2980 3004 C1' A B 42 beta 2999 3005 3002 3026 C1' U B 43 beta 3021 3027 3024 3046 C1' U B 44 beta 3041 3047 3044 3066 C1' C B 45 beta 3061 3067 3064 3086 C1' G B 46 beta 3081 3087 3084 3109 C1' U B 47 beta 3104 3110 3107 3129 C1' G B 48 beta 3124 3130 3127 3152 C1' A B 49 beta 3147 3153 3150 3174 C1' G B 50 beta 3169 3175 3172 3197 C1' G B 51 beta 3192 3198 3195 3220 C1' A B 52 beta 3215 3221 3218 3242 C1' A B 53 beta 3237 3243 3240 3264 C1' A B 54 beta 3259 3265 3262 3286 C1' C B 55 beta 3281 3287 3284 3306 C1' U B 56 beta 3301 3307 3304 3326 C1' C B 57 beta 3321 3327 3324 3346 C1' A B 58 beta 3341 3347 3344 3368 C1' C B 59 beta 3363 3369 3366 3388 C1' C B 60 beta 3383 3389 3386 3408 C1' G B 61 beta 3403 3409 3406 3431 C1' G B 62 beta 3426 3432 3429 3454 C1' C B 63 beta 3449 3455 3452 3474 C1' U B 64 beta 3469 3475 3472 3494 C1' U B 65 beta 3489 3495 3492 3514 C1' U B 66 beta 3509 3515 3512 3534 C1' G B 67 beta 3529 3535 3532 3557 C1' U B 68 beta 3552 3558 3555 3577 C1' U B 69 beta 3572 3578 3575 3597 C1' G B 70 beta 3592 3598 3595 3620 C1' A B 71 beta 3615 3621 3618 3642 C1' C B 72 beta 3637 3643 3640 3662 C1' A B 73 beta 3657 3663 3660 3684 C1' U B 74 beta 3679 3685 3682 3704 C1' A B 75 beta 3699 3705 3702 3726 C1' C B 76 beta 3721 3727 3724 3746 C1' G B 77 beta 3741 3747 3744 3769 C1' A B 78 beta 3764 3770 3767 3791 C1' A B 79 beta 3786 3792 3789 3813 C1' A B 80 beta 3808 3814 3811 3835 C1' G B 81 beta 3830 3836 3833 3858 C1' U B 82 beta 3853 3859 3856 3878 C1' A B 83 beta 3873 3879 3876 3900 C1' U B 84 beta 3895 3901 3898 3920 C1' G B 85 beta 3915 3921 3918 3943 C1' U B 86 beta 3938 3944 3941 3963 C1' U B 87 beta 3958 3964 3961 3983 C1' U B 88 beta 3978 3984 3981 4003 C1' A B 89 beta 3998 4004 4001 4025 C1' G B 90 beta 4020 4026 4023 4048 C1' C B 91 beta 4043 4049 4046 4068 C1' A B 92 beta 4063 4069 4066 4090 C1' A B 93 beta 4085 4091 4088 4112 C1' G B 94 beta 4107 4113 4110 4135 C1' A B 95 beta 4130 4136 4133 4157 C1' C B 96 beta 4152 4158 4155 4177 C1' C B 97 beta 4172 4178 4175 4197 C1' U B 98 beta 4192 4198 4195 4217 C1' U B 99 beta 4212 4218 4215 4237 C1' U B 100 beta 4232 4238 4235 4257 C1' C B 101 beta 4252 4258 4255 4277 C1' C B 102 beta 4272 4278 4275 4307 C1' GTP A 201 beta 4302 4308 4305 4363 C1' GTP A 226 beta 4358 4364 4361 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 10 C2' A A 3 OK 12 8 11 32 C2' A A 4 OK 34 30 33 54 C2' A A 5 OK 56 52 55 76 C2' G A 6 OK 78 74 77 99 C2' G A 7 OK 101 97 100 122 C2' G A 8 OK 124 120 123 145 C2' G A 9 OK 147 143 146 168 C2' A A 10 OK 170 166 169 190 C2' G A 11 OK 192 188 191 213 C2' U A 12 OK 215 211 214 233 C2' A A 13 OK 235 231 234 255 C2' G A 14 OK 257 253 256 278 C2' C A 15 OK 280 276 279 298 C2' G A 16 OK 300 296 299 321 C2' U A 17 OK 323 319 322 341 C2' C A 18 OK 343 339 342 361 C2' G A 19 OK 363 359 362 384 C2' G A 20 OK 386 382 385 407 C2' G A 21 OK 409 405 408 430 C2' A A 22 OK 432 428 431 452 C2' A A 23 OK 454 450 453 474 C2' A A 24 OK 476 472 475 496 C2' C A 25 OK 498 494 497 516 C2' C A 26 OK 518 514 517 536 C2' G A 27 OK 538 534 537 559 C2' A A 28 OK 561 557 560 581 C2' A A 29 OK 583 579 582 603 C2' A A 30 OK 605 601 604 625 C2' C A 31 OK 627 623 626 645 C2' A A 32 OK 647 643 646 667 C2' A A 33 OK 669 665 668 689 C2' A A 34 OK 691 687 690 711 C2' G A 35 OK 713 709 712 734 C2' U A 36 OK 736 732 735 754 C2' C A 37 OK 756 752 755 774 C2' G A 38 OK 776 772 775 797 C2' U A 39 OK 799 795 798 817 C2' C A 40 OK 819 815 818 837 C2' A A 41 OK 839 835 838 859 C2' A A 42 OK 861 857 860 881 C2' U A 43 OK 883 879 882 901 C2' U A 44 OK 903 899 902 921 C2' C A 45 OK 923 919 922 941 C2' G A 46 OK 943 939 942 964 C2' U A 47 OK 966 962 965 984 C2' G A 48 OK 986 982 985 1007 C2' A A 49 OK 1009 1005 1008 1029 C2' G A 50 OK 1031 1027 1030 1052 C2' G A 51 OK 1054 1050 1053 1075 C2' A A 52 OK 1077 1073 1076 1097 C2' A A 53 OK 1099 1095 1098 1119 C2' A A 54 OK 1121 1117 1120 1141 C2' C A 55 OK 1143 1139 1142 1161 C2' U A 56 OK 1163 1159 1162 1181 C2' C A 57 OK 1183 1179 1182 1201 C2' A A 58 OK 1203 1199 1202 1223 C2' C A 59 OK 1225 1221 1224 1243 C2' C A 60 OK 1245 1241 1244 1263 C2' G A 61 OK 1265 1261 1264 1286 C2' G A 62 OK 1288 1284 1287 1309 C2' C A 63 OK 1311 1307 1310 1329 C2' U A 64 OK 1331 1327 1330 1349 C2' U A 65 OK 1351 1347 1350 1369 C2' U A 66 OK 1371 1367 1370 1389 C2' G A 67 OK 1391 1387 1390 1412 C2' U A 68 OK 1414 1410 1413 1432 C2' U A 69 OK 1434 1430 1433 1452 C2' G A 70 OK 1454 1450 1453 1475 C2' A A 71 OK 1477 1473 1476 1497 C2' C A 72 OK 1499 1495 1498 1517 C2' A A 73 OK 1519 1515 1518 1539 C2' U A 74 OK 1541 1537 1540 1559 C2' A A 75 OK 1561 1557 1560 1581 C2' C A 76 OK 1583 1579 1582 1601 C2' G A 77 OK 1603 1599 1602 1624 C2' A A 78 OK 1626 1622 1625 1646 C2' A A 79 OK 1648 1644 1647 1668 C2' A A 80 OK 1670 1666 1669 1690 C2' G A 81 OK 1692 1688 1691 1713 C2' U A 82 OK 1715 1711 1714 1733 C2' A A 83 OK 1735 1731 1734 1755 C2' U A 84 OK 1757 1753 1756 1775 C2' G A 85 OK 1777 1773 1776 1798 C2' U A 86 OK 1800 1796 1799 1818 C2' U A 87 OK 1820 1816 1819 1838 C2' U A 88 OK 1840 1836 1839 1858 C2' A A 89 OK 1860 1856 1859 1880 C2' G A 90 OK 1882 1878 1881 1903 C2' C A 91 OK 1905 1901 1904 1923 C2' A A 92 OK 1925 1921 1924 1945 C2' A A 93 OK 1947 1943 1946 1967 C2' G A 94 OK 1969 1965 1968 1990 C2' A A 95 OK 1992 1988 1991 2012 C2' C A 96 OK 2014 2010 2013 2032 C2' C A 97 OK 2034 2030 2033 2052 C2' U A 98 OK 2054 2050 2053 2072 C2' U A 99 OK 2074 2070 2073 2092 C2' U A 100 OK 2094 2090 2093 2112 C2' C A 101 OK 2114 2110 2113 2132 C2' C A 102 OK 2134 2130 2133 2153 C2' A B 3 OK 2155 2151 2154 2175 C2' A B 4 OK 2177 2173 2176 2197 C2' A B 5 OK 2199 2195 2198 2219 C2' G B 6 OK 2221 2217 2220 2242 C2' G B 7 OK 2244 2240 2243 2265 C2' G B 8 OK 2267 2263 2266 2288 C2' G B 9 OK 2290 2286 2289 2311 C2' A B 10 OK 2313 2309 2312 2333 C2' G B 11 OK 2335 2331 2334 2356 C2' U B 12 OK 2358 2354 2357 2376 C2' A B 13 OK 2378 2374 2377 2398 C2' G B 14 OK 2400 2396 2399 2421 C2' C B 15 OK 2423 2419 2422 2441 C2' G B 16 OK 2443 2439 2442 2464 C2' U B 17 OK 2466 2462 2465 2484 C2' C B 18 OK 2486 2482 2485 2504 C2' G B 19 OK 2506 2502 2505 2527 C2' G B 20 OK 2529 2525 2528 2550 C2' G B 21 OK 2552 2548 2551 2573 C2' A B 22 OK 2575 2571 2574 2595 C2' A B 23 OK 2597 2593 2596 2617 C2' A B 24 OK 2619 2615 2618 2639 C2' C B 25 OK 2641 2637 2640 2659 C2' C B 26 OK 2661 2657 2660 2679 C2' G B 27 OK 2681 2677 2680 2702 C2' A B 28 OK 2704 2700 2703 2724 C2' A B 29 OK 2726 2722 2725 2746 C2' A B 30 OK 2748 2744 2747 2768 C2' C B 31 OK 2770 2766 2769 2788 C2' A B 32 OK 2790 2786 2789 2810 C2' A B 33 OK 2812 2808 2811 2832 C2' A B 34 OK 2834 2830 2833 2854 C2' G B 35 OK 2856 2852 2855 2877 C2' U B 36 OK 2879 2875 2878 2897 C2' C B 37 OK 2899 2895 2898 2917 C2' G B 38 OK 2919 2915 2918 2940 C2' U B 39 OK 2942 2938 2941 2960 C2' C B 40 OK 2962 2958 2961 2980 C2' A B 41 OK 2982 2978 2981 3002 C2' A B 42 OK 3004 3000 3003 3024 C2' U B 43 OK 3026 3022 3025 3044 C2' U B 44 OK 3046 3042 3045 3064 C2' C B 45 OK 3066 3062 3065 3084 C2' G B 46 OK 3086 3082 3085 3107 C2' U B 47 OK 3109 3105 3108 3127 C2' G B 48 OK 3129 3125 3128 3150 C2' A B 49 OK 3152 3148 3151 3172 C2' G B 50 OK 3174 3170 3173 3195 C2' G B 51 OK 3197 3193 3196 3218 C2' A B 52 OK 3220 3216 3219 3240 C2' A B 53 OK 3242 3238 3241 3262 C2' A B 54 OK 3264 3260 3263 3284 C2' C B 55 OK 3286 3282 3285 3304 C2' U B 56 OK 3306 3302 3305 3324 C2' C B 57 OK 3326 3322 3325 3344 C2' A B 58 OK 3346 3342 3345 3366 C2' C B 59 OK 3368 3364 3367 3386 C2' C B 60 OK 3388 3384 3387 3406 C2' G B 61 OK 3408 3404 3407 3429 C2' G B 62 OK 3431 3427 3430 3452 C2' C B 63 OK 3454 3450 3453 3472 C2' U B 64 OK 3474 3470 3473 3492 C2' U B 65 OK 3494 3490 3493 3512 C2' U B 66 OK 3514 3510 3513 3532 C2' G B 67 OK 3534 3530 3533 3555 C2' U B 68 OK 3557 3553 3556 3575 C2' U B 69 OK 3577 3573 3576 3595 C2' G B 70 OK 3597 3593 3596 3618 C2' A B 71 OK 3620 3616 3619 3640 C2' C B 72 OK 3642 3638 3641 3660 C2' A B 73 OK 3662 3658 3661 3682 C2' U B 74 OK 3684 3680 3683 3702 C2' A B 75 OK 3704 3700 3703 3724 C2' C B 76 OK 3726 3722 3725 3744 C2' G B 77 OK 3746 3742 3745 3767 C2' A B 78 OK 3769 3765 3768 3789 C2' A B 79 OK 3791 3787 3790 3811 C2' A B 80 OK 3813 3809 3812 3833 C2' G B 81 OK 3835 3831 3834 3856 C2' U B 82 OK 3858 3854 3857 3876 C2' A B 83 OK 3878 3874 3877 3898 C2' U B 84 OK 3900 3896 3899 3918 C2' G B 85 OK 3920 3916 3919 3941 C2' U B 86 OK 3943 3939 3942 3961 C2' U B 87 OK 3963 3959 3962 3981 C2' U B 88 OK 3983 3979 3982 4001 C2' A B 89 OK 4003 3999 4002 4023 C2' G B 90 OK 4025 4021 4024 4046 C2' C B 91 OK 4048 4044 4047 4066 C2' A B 92 OK 4068 4064 4067 4088 C2' A B 93 OK 4090 4086 4089 4110 C2' G B 94 OK 4112 4108 4111 4133 C2' A B 95 OK 4135 4131 4134 4155 C2' C B 96 OK 4157 4153 4156 4175 C2' C B 97 OK 4177 4173 4176 4195 C2' U B 98 OK 4197 4193 4196 4215 C2' U B 99 OK 4217 4213 4216 4235 C2' U B 100 OK 4237 4233 4236 4255 C2' C B 101 OK 4257 4253 4256 4275 C2' C B 102 OK 4277 4273 4276 4305 C2' GTP A 201 OK 4307 4303 4306 4361 C2' GTP A 226 OK 4363 4359 4362 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 8 C3' A A 3 OK 6 9 10 30 C3' A A 4 OK 28 31 32 52 C3' A A 5 OK 50 53 54 74 C3' G A 6 OK 72 75 76 97 C3' G A 7 OK 95 98 99 120 C3' G A 8 OK 118 121 122 143 C3' G A 9 OK 141 144 145 166 C3' A A 10 OK 164 167 168 188 C3' G A 11 OK 186 189 190 211 C3' U A 12 OK 209 212 213 231 C3' A A 13 OK 229 232 233 253 C3' G A 14 OK 251 254 255 276 C3' C A 15 OK 274 277 278 296 C3' G A 16 OK 294 297 298 319 C3' U A 17 OK 317 320 321 339 C3' C A 18 OK 337 340 341 359 C3' G A 19 OK 357 360 361 382 C3' G A 20 OK 380 383 384 405 C3' G A 21 OK 403 406 407 428 C3' A A 22 OK 426 429 430 450 C3' A A 23 OK 448 451 452 472 C3' A A 24 OK 470 473 474 494 C3' C A 25 OK 492 495 496 514 C3' C A 26 OK 512 515 516 534 C3' G A 27 OK 532 535 536 557 C3' A A 28 OK 555 558 559 579 C3' A A 29 OK 577 580 581 601 C3' A A 30 OK 599 602 603 623 C3' C A 31 OK 621 624 625 643 C3' A A 32 OK 641 644 645 665 C3' A A 33 OK 663 666 667 687 C3' A A 34 OK 685 688 689 709 C3' G A 35 OK 707 710 711 732 C3' U A 36 OK 730 733 734 752 C3' C A 37 OK 750 753 754 772 C3' G A 38 OK 770 773 774 795 C3' U A 39 OK 793 796 797 815 C3' C A 40 OK 813 816 817 835 C3' A A 41 OK 833 836 837 857 C3' A A 42 OK 855 858 859 879 C3' U A 43 OK 877 880 881 899 C3' U A 44 OK 897 900 901 919 C3' C A 45 OK 917 920 921 939 C3' G A 46 OK 937 940 941 962 C3' U A 47 OK 960 963 964 982 C3' G A 48 OK 980 983 984 1005 C3' A A 49 OK 1003 1006 1007 1027 C3' G A 50 OK 1025 1028 1029 1050 C3' G A 51 OK 1048 1051 1052 1073 C3' A A 52 OK 1071 1074 1075 1095 C3' A A 53 OK 1093 1096 1097 1117 C3' A A 54 OK 1115 1118 1119 1139 C3' C A 55 OK 1137 1140 1141 1159 C3' U A 56 OK 1157 1160 1161 1179 C3' C A 57 OK 1177 1180 1181 1199 C3' A A 58 OK 1197 1200 1201 1221 C3' C A 59 OK 1219 1222 1223 1241 C3' C A 60 OK 1239 1242 1243 1261 C3' G A 61 OK 1259 1262 1263 1284 C3' G A 62 OK 1282 1285 1286 1307 C3' C A 63 OK 1305 1308 1309 1327 C3' U A 64 OK 1325 1328 1329 1347 C3' U A 65 OK 1345 1348 1349 1367 C3' U A 66 OK 1365 1368 1369 1387 C3' G A 67 OK 1385 1388 1389 1410 C3' U A 68 OK 1408 1411 1412 1430 C3' U A 69 OK 1428 1431 1432 1450 C3' G A 70 OK 1448 1451 1452 1473 C3' A A 71 OK 1471 1474 1475 1495 C3' C A 72 OK 1493 1496 1497 1515 C3' A A 73 OK 1513 1516 1517 1537 C3' U A 74 OK 1535 1538 1539 1557 C3' A A 75 OK 1555 1558 1559 1579 C3' C A 76 OK 1577 1580 1581 1599 C3' G A 77 OK 1597 1600 1601 1622 C3' A A 78 OK 1620 1623 1624 1644 C3' A A 79 OK 1642 1645 1646 1666 C3' A A 80 OK 1664 1667 1668 1688 C3' G A 81 OK 1686 1689 1690 1711 C3' U A 82 OK 1709 1712 1713 1731 C3' A A 83 OK 1729 1732 1733 1753 C3' U A 84 OK 1751 1754 1755 1773 C3' G A 85 OK 1771 1774 1775 1796 C3' U A 86 OK 1794 1797 1798 1816 C3' U A 87 OK 1814 1817 1818 1836 C3' U A 88 OK 1834 1837 1838 1856 C3' A A 89 OK 1854 1857 1858 1878 C3' G A 90 OK 1876 1879 1880 1901 C3' C A 91 OK 1899 1902 1903 1921 C3' A A 92 OK 1919 1922 1923 1943 C3' A A 93 OK 1941 1944 1945 1965 C3' G A 94 OK 1963 1966 1967 1988 C3' A A 95 OK 1986 1989 1990 2010 C3' C A 96 OK 2008 2011 2012 2030 C3' C A 97 OK 2028 2031 2032 2050 C3' U A 98 OK 2048 2051 2052 2070 C3' U A 99 OK 2068 2071 2072 2090 C3' U A 100 OK 2088 2091 2092 2110 C3' C A 101 OK 2108 2111 2112 2130 C3' C A 102 OK 2128 2131 2132 2151 C3' A B 3 OK 2149 2152 2153 2173 C3' A B 4 OK 2171 2174 2175 2195 C3' A B 5 OK 2193 2196 2197 2217 C3' G B 6 OK 2215 2218 2219 2240 C3' G B 7 OK 2238 2241 2242 2263 C3' G B 8 OK 2261 2264 2265 2286 C3' G B 9 OK 2284 2287 2288 2309 C3' A B 10 OK 2307 2310 2311 2331 C3' G B 11 OK 2329 2332 2333 2354 C3' U B 12 OK 2352 2355 2356 2374 C3' A B 13 OK 2372 2375 2376 2396 C3' G B 14 OK 2394 2397 2398 2419 C3' C B 15 OK 2417 2420 2421 2439 C3' G B 16 OK 2437 2440 2441 2462 C3' U B 17 OK 2460 2463 2464 2482 C3' C B 18 OK 2480 2483 2484 2502 C3' G B 19 OK 2500 2503 2504 2525 C3' G B 20 OK 2523 2526 2527 2548 C3' G B 21 OK 2546 2549 2550 2571 C3' A B 22 OK 2569 2572 2573 2593 C3' A B 23 OK 2591 2594 2595 2615 C3' A B 24 OK 2613 2616 2617 2637 C3' C B 25 OK 2635 2638 2639 2657 C3' C B 26 OK 2655 2658 2659 2677 C3' G B 27 OK 2675 2678 2679 2700 C3' A B 28 OK 2698 2701 2702 2722 C3' A B 29 OK 2720 2723 2724 2744 C3' A B 30 OK 2742 2745 2746 2766 C3' C B 31 OK 2764 2767 2768 2786 C3' A B 32 OK 2784 2787 2788 2808 C3' A B 33 OK 2806 2809 2810 2830 C3' A B 34 OK 2828 2831 2832 2852 C3' G B 35 OK 2850 2853 2854 2875 C3' U B 36 OK 2873 2876 2877 2895 C3' C B 37 OK 2893 2896 2897 2915 C3' G B 38 OK 2913 2916 2917 2938 C3' U B 39 OK 2936 2939 2940 2958 C3' C B 40 OK 2956 2959 2960 2978 C3' A B 41 OK 2976 2979 2980 3000 C3' A B 42 OK 2998 3001 3002 3022 C3' U B 43 OK 3020 3023 3024 3042 C3' U B 44 OK 3040 3043 3044 3062 C3' C B 45 OK 3060 3063 3064 3082 C3' G B 46 OK 3080 3083 3084 3105 C3' U B 47 OK 3103 3106 3107 3125 C3' G B 48 OK 3123 3126 3127 3148 C3' A B 49 OK 3146 3149 3150 3170 C3' G B 50 OK 3168 3171 3172 3193 C3' G B 51 OK 3191 3194 3195 3216 C3' A B 52 OK 3214 3217 3218 3238 C3' A B 53 OK 3236 3239 3240 3260 C3' A B 54 OK 3258 3261 3262 3282 C3' C B 55 OK 3280 3283 3284 3302 C3' U B 56 OK 3300 3303 3304 3322 C3' C B 57 OK 3320 3323 3324 3342 C3' A B 58 OK 3340 3343 3344 3364 C3' C B 59 OK 3362 3365 3366 3384 C3' C B 60 OK 3382 3385 3386 3404 C3' G B 61 OK 3402 3405 3406 3427 C3' G B 62 OK 3425 3428 3429 3450 C3' C B 63 OK 3448 3451 3452 3470 C3' U B 64 OK 3468 3471 3472 3490 C3' U B 65 OK 3488 3491 3492 3510 C3' U B 66 OK 3508 3511 3512 3530 C3' G B 67 OK 3528 3531 3532 3553 C3' U B 68 OK 3551 3554 3555 3573 C3' U B 69 OK 3571 3574 3575 3593 C3' G B 70 OK 3591 3594 3595 3616 C3' A B 71 OK 3614 3617 3618 3638 C3' C B 72 OK 3636 3639 3640 3658 C3' A B 73 OK 3656 3659 3660 3680 C3' U B 74 OK 3678 3681 3682 3700 C3' A B 75 OK 3698 3701 3702 3722 C3' C B 76 OK 3720 3723 3724 3742 C3' G B 77 OK 3740 3743 3744 3765 C3' A B 78 OK 3763 3766 3767 3787 C3' A B 79 OK 3785 3788 3789 3809 C3' A B 80 OK 3807 3810 3811 3831 C3' G B 81 OK 3829 3832 3833 3854 C3' U B 82 OK 3852 3855 3856 3874 C3' A B 83 OK 3872 3875 3876 3896 C3' U B 84 OK 3894 3897 3898 3916 C3' G B 85 OK 3914 3917 3918 3939 C3' U B 86 OK 3937 3940 3941 3959 C3' U B 87 OK 3957 3960 3961 3979 C3' U B 88 OK 3977 3980 3981 3999 C3' A B 89 OK 3997 4000 4001 4021 C3' G B 90 OK 4019 4022 4023 4044 C3' C B 91 OK 4042 4045 4046 4064 C3' A B 92 OK 4062 4065 4066 4086 C3' A B 93 OK 4084 4087 4088 4108 C3' G B 94 OK 4106 4109 4110 4131 C3' A B 95 OK 4129 4132 4133 4153 C3' C B 96 OK 4151 4154 4155 4173 C3' C B 97 OK 4171 4174 4175 4193 C3' U B 98 OK 4191 4194 4195 4213 C3' U B 99 OK 4211 4214 4215 4233 C3' U B 100 OK 4231 4234 4235 4253 C3' C B 101 OK 4251 4254 4255 4273 C3' C B 102 OK 4271 4274 4275 4303 C3' GTP A 201 OK 4301 4304 4305 4359 C3' GTP A 226 OK 4357 4360 4361 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 6 C4' A A 3 OK 8 5 7 28 C4' A A 4 OK 30 27 29 50 C4' A A 5 OK 52 49 51 72 C4' G A 6 OK 74 71 73 95 C4' G A 7 OK 97 94 96 118 C4' G A 8 OK 120 117 119 141 C4' G A 9 OK 143 140 142 164 C4' A A 10 OK 166 163 165 186 C4' G A 11 OK 188 185 187 209 C4' U A 12 OK 211 208 210 229 C4' A A 13 OK 231 228 230 251 C4' G A 14 OK 253 250 252 274 C4' C A 15 OK 276 273 275 294 C4' G A 16 OK 296 293 295 317 C4' U A 17 OK 319 316 318 337 C4' C A 18 OK 339 336 338 357 C4' G A 19 OK 359 356 358 380 C4' G A 20 OK 382 379 381 403 C4' G A 21 OK 405 402 404 426 C4' A A 22 OK 428 425 427 448 C4' A A 23 OK 450 447 449 470 C4' A A 24 OK 472 469 471 492 C4' C A 25 OK 494 491 493 512 C4' C A 26 OK 514 511 513 532 C4' G A 27 OK 534 531 533 555 C4' A A 28 OK 557 554 556 577 C4' A A 29 OK 579 576 578 599 C4' A A 30 OK 601 598 600 621 C4' C A 31 OK 623 620 622 641 C4' A A 32 OK 643 640 642 663 C4' A A 33 OK 665 662 664 685 C4' A A 34 OK 687 684 686 707 C4' G A 35 OK 709 706 708 730 C4' U A 36 OK 732 729 731 750 C4' C A 37 OK 752 749 751 770 C4' G A 38 OK 772 769 771 793 C4' U A 39 OK 795 792 794 813 C4' C A 40 OK 815 812 814 833 C4' A A 41 OK 835 832 834 855 C4' A A 42 OK 857 854 856 877 C4' U A 43 OK 879 876 878 897 C4' U A 44 OK 899 896 898 917 C4' C A 45 OK 919 916 918 937 C4' G A 46 OK 939 936 938 960 C4' U A 47 OK 962 959 961 980 C4' G A 48 OK 982 979 981 1003 C4' A A 49 OK 1005 1002 1004 1025 C4' G A 50 OK 1027 1024 1026 1048 C4' G A 51 OK 1050 1047 1049 1071 C4' A A 52 OK 1073 1070 1072 1093 C4' A A 53 OK 1095 1092 1094 1115 C4' A A 54 OK 1117 1114 1116 1137 C4' C A 55 OK 1139 1136 1138 1157 C4' U A 56 OK 1159 1156 1158 1177 C4' C A 57 OK 1179 1176 1178 1197 C4' A A 58 OK 1199 1196 1198 1219 C4' C A 59 OK 1221 1218 1220 1239 C4' C A 60 OK 1241 1238 1240 1259 C4' G A 61 OK 1261 1258 1260 1282 C4' G A 62 OK 1284 1281 1283 1305 C4' C A 63 OK 1307 1304 1306 1325 C4' U A 64 OK 1327 1324 1326 1345 C4' U A 65 OK 1347 1344 1346 1365 C4' U A 66 OK 1367 1364 1366 1385 C4' G A 67 OK 1387 1384 1386 1408 C4' U A 68 OK 1410 1407 1409 1428 C4' U A 69 OK 1430 1427 1429 1448 C4' G A 70 OK 1450 1447 1449 1471 C4' A A 71 OK 1473 1470 1472 1493 C4' C A 72 OK 1495 1492 1494 1513 C4' A A 73 OK 1515 1512 1514 1535 C4' U A 74 OK 1537 1534 1536 1555 C4' A A 75 OK 1557 1554 1556 1577 C4' C A 76 OK 1579 1576 1578 1597 C4' G A 77 OK 1599 1596 1598 1620 C4' A A 78 OK 1622 1619 1621 1642 C4' A A 79 OK 1644 1641 1643 1664 C4' A A 80 OK 1666 1663 1665 1686 C4' G A 81 OK 1688 1685 1687 1709 C4' U A 82 OK 1711 1708 1710 1729 C4' A A 83 OK 1731 1728 1730 1751 C4' U A 84 OK 1753 1750 1752 1771 C4' G A 85 OK 1773 1770 1772 1794 C4' U A 86 OK 1796 1793 1795 1814 C4' U A 87 OK 1816 1813 1815 1834 C4' U A 88 OK 1836 1833 1835 1854 C4' A A 89 OK 1856 1853 1855 1876 C4' G A 90 OK 1878 1875 1877 1899 C4' C A 91 OK 1901 1898 1900 1919 C4' A A 92 OK 1921 1918 1920 1941 C4' A A 93 OK 1943 1940 1942 1963 C4' G A 94 OK 1965 1962 1964 1986 C4' A A 95 OK 1988 1985 1987 2008 C4' C A 96 OK 2010 2007 2009 2028 C4' C A 97 OK 2030 2027 2029 2048 C4' U A 98 OK 2050 2047 2049 2068 C4' U A 99 OK 2070 2067 2069 2088 C4' U A 100 OK 2090 2087 2089 2108 C4' C A 101 OK 2110 2107 2109 2128 C4' C A 102 OK 2130 2127 2129 2149 C4' A B 3 OK 2151 2148 2150 2171 C4' A B 4 OK 2173 2170 2172 2193 C4' A B 5 OK 2195 2192 2194 2215 C4' G B 6 OK 2217 2214 2216 2238 C4' G B 7 OK 2240 2237 2239 2261 C4' G B 8 OK 2263 2260 2262 2284 C4' G B 9 OK 2286 2283 2285 2307 C4' A B 10 OK 2309 2306 2308 2329 C4' G B 11 OK 2331 2328 2330 2352 C4' U B 12 OK 2354 2351 2353 2372 C4' A B 13 OK 2374 2371 2373 2394 C4' G B 14 OK 2396 2393 2395 2417 C4' C B 15 OK 2419 2416 2418 2437 C4' G B 16 OK 2439 2436 2438 2460 C4' U B 17 OK 2462 2459 2461 2480 C4' C B 18 OK 2482 2479 2481 2500 C4' G B 19 OK 2502 2499 2501 2523 C4' G B 20 OK 2525 2522 2524 2546 C4' G B 21 OK 2548 2545 2547 2569 C4' A B 22 OK 2571 2568 2570 2591 C4' A B 23 OK 2593 2590 2592 2613 C4' A B 24 OK 2615 2612 2614 2635 C4' C B 25 OK 2637 2634 2636 2655 C4' C B 26 OK 2657 2654 2656 2675 C4' G B 27 OK 2677 2674 2676 2698 C4' A B 28 OK 2700 2697 2699 2720 C4' A B 29 OK 2722 2719 2721 2742 C4' A B 30 OK 2744 2741 2743 2764 C4' C B 31 OK 2766 2763 2765 2784 C4' A B 32 OK 2786 2783 2785 2806 C4' A B 33 OK 2808 2805 2807 2828 C4' A B 34 OK 2830 2827 2829 2850 C4' G B 35 OK 2852 2849 2851 2873 C4' U B 36 OK 2875 2872 2874 2893 C4' C B 37 OK 2895 2892 2894 2913 C4' G B 38 OK 2915 2912 2914 2936 C4' U B 39 OK 2938 2935 2937 2956 C4' C B 40 OK 2958 2955 2957 2976 C4' A B 41 OK 2978 2975 2977 2998 C4' A B 42 OK 3000 2997 2999 3020 C4' U B 43 OK 3022 3019 3021 3040 C4' U B 44 OK 3042 3039 3041 3060 C4' C B 45 OK 3062 3059 3061 3080 C4' G B 46 OK 3082 3079 3081 3103 C4' U B 47 OK 3105 3102 3104 3123 C4' G B 48 OK 3125 3122 3124 3146 C4' A B 49 OK 3148 3145 3147 3168 C4' G B 50 OK 3170 3167 3169 3191 C4' G B 51 OK 3193 3190 3192 3214 C4' A B 52 OK 3216 3213 3215 3236 C4' A B 53 OK 3238 3235 3237 3258 C4' A B 54 OK 3260 3257 3259 3280 C4' C B 55 OK 3282 3279 3281 3300 C4' U B 56 OK 3302 3299 3301 3320 C4' C B 57 OK 3322 3319 3321 3340 C4' A B 58 OK 3342 3339 3341 3362 C4' C B 59 OK 3364 3361 3363 3382 C4' C B 60 OK 3384 3381 3383 3402 C4' G B 61 OK 3404 3401 3403 3425 C4' G B 62 OK 3427 3424 3426 3448 C4' C B 63 OK 3450 3447 3449 3468 C4' U B 64 OK 3470 3467 3469 3488 C4' U B 65 OK 3490 3487 3489 3508 C4' U B 66 OK 3510 3507 3509 3528 C4' G B 67 OK 3530 3527 3529 3551 C4' U B 68 OK 3553 3550 3552 3571 C4' U B 69 OK 3573 3570 3572 3591 C4' G B 70 OK 3593 3590 3592 3614 C4' A B 71 OK 3616 3613 3615 3636 C4' C B 72 OK 3638 3635 3637 3656 C4' A B 73 OK 3658 3655 3657 3678 C4' U B 74 OK 3680 3677 3679 3698 C4' A B 75 OK 3700 3697 3699 3720 C4' C B 76 OK 3722 3719 3721 3740 C4' G B 77 OK 3742 3739 3741 3763 C4' A B 78 OK 3765 3762 3764 3785 C4' A B 79 OK 3787 3784 3786 3807 C4' A B 80 OK 3809 3806 3808 3829 C4' G B 81 OK 3831 3828 3830 3852 C4' U B 82 OK 3854 3851 3853 3872 C4' A B 83 OK 3874 3871 3873 3894 C4' U B 84 OK 3896 3893 3895 3914 C4' G B 85 OK 3916 3913 3915 3937 C4' U B 86 OK 3939 3936 3938 3957 C4' U B 87 OK 3959 3956 3958 3977 C4' U B 88 OK 3979 3976 3978 3997 C4' A B 89 OK 3999 3996 3998 4019 C4' G B 90 OK 4021 4018 4020 4042 C4' C B 91 OK 4044 4041 4043 4062 C4' A B 92 OK 4064 4061 4063 4084 C4' A B 93 OK 4086 4083 4085 4106 C4' G B 94 OK 4108 4105 4107 4129 C4' A B 95 OK 4131 4128 4130 4151 C4' C B 96 OK 4153 4150 4152 4171 C4' C B 97 OK 4173 4170 4172 4191 C4' U B 98 OK 4193 4190 4192 4211 C4' U B 99 OK 4213 4210 4212 4231 C4' U B 100 OK 4233 4230 4232 4251 C4' C B 101 OK 4253 4250 4252 4271 C4' C B 102 OK 4273 4270 4272 4301 C4' GTP A 201 OK 4303 4300 4302 4357 C4' GTP A 226 OK 4359 4356 4358 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 5 C5' A A 3 4 6 27 C5' A A 4 26 28 49 C5' A A 5 48 50 71 C5' G A 6 70 72 94 C5' G A 7 93 95 117 C5' G A 8 116 118 140 C5' G A 9 139 141 163 C5' A A 10 162 164 185 C5' G A 11 184 186 208 C5' U A 12 207 209 228 C5' A A 13 227 229 250 C5' G A 14 249 251 273 C5' C A 15 272 274 293 C5' G A 16 292 294 316 C5' U A 17 315 317 336 C5' C A 18 335 337 356 C5' G A 19 355 357 379 C5' G A 20 378 380 402 C5' G A 21 401 403 425 C5' A A 22 424 426 447 C5' A A 23 446 448 469 C5' A A 24 468 470 491 C5' C A 25 490 492 511 C5' C A 26 510 512 531 C5' G A 27 530 532 554 C5' A A 28 553 555 576 C5' A A 29 575 577 598 C5' A A 30 597 599 620 C5' C A 31 619 621 640 C5' A A 32 639 641 662 C5' A A 33 661 663 684 C5' A A 34 683 685 706 C5' G A 35 705 707 729 C5' U A 36 728 730 749 C5' C A 37 748 750 769 C5' G A 38 768 770 792 C5' U A 39 791 793 812 C5' C A 40 811 813 832 C5' A A 41 831 833 854 C5' A A 42 853 855 876 C5' U A 43 875 877 896 C5' U A 44 895 897 916 C5' C A 45 915 917 936 C5' G A 46 935 937 959 C5' U A 47 958 960 979 C5' G A 48 978 980 1002 C5' A A 49 1001 1003 1024 C5' G A 50 1023 1025 1047 C5' G A 51 1046 1048 1070 C5' A A 52 1069 1071 1092 C5' A A 53 1091 1093 1114 C5' A A 54 1113 1115 1136 C5' C A 55 1135 1137 1156 C5' U A 56 1155 1157 1176 C5' C A 57 1175 1177 1196 C5' A A 58 1195 1197 1218 C5' C A 59 1217 1219 1238 C5' C A 60 1237 1239 1258 C5' G A 61 1257 1259 1281 C5' G A 62 1280 1282 1304 C5' C A 63 1303 1305 1324 C5' U A 64 1323 1325 1344 C5' U A 65 1343 1345 1364 C5' U A 66 1363 1365 1384 C5' G A 67 1383 1385 1407 C5' U A 68 1406 1408 1427 C5' U A 69 1426 1428 1447 C5' G A 70 1446 1448 1470 C5' A A 71 1469 1471 1492 C5' C A 72 1491 1493 1512 C5' A A 73 1511 1513 1534 C5' U A 74 1533 1535 1554 C5' A A 75 1553 1555 1576 C5' C A 76 1575 1577 1596 C5' G A 77 1595 1597 1619 C5' A A 78 1618 1620 1641 C5' A A 79 1640 1642 1663 C5' A A 80 1662 1664 1685 C5' G A 81 1684 1686 1708 C5' U A 82 1707 1709 1728 C5' A A 83 1727 1729 1750 C5' U A 84 1749 1751 1770 C5' G A 85 1769 1771 1793 C5' U A 86 1792 1794 1813 C5' U A 87 1812 1814 1833 C5' U A 88 1832 1834 1853 C5' A A 89 1852 1854 1875 C5' G A 90 1874 1876 1898 C5' C A 91 1897 1899 1918 C5' A A 92 1917 1919 1940 C5' A A 93 1939 1941 1962 C5' G A 94 1961 1963 1985 C5' A A 95 1984 1986 2007 C5' C A 96 2006 2008 2027 C5' C A 97 2026 2028 2047 C5' U A 98 2046 2048 2067 C5' U A 99 2066 2068 2087 C5' U A 100 2086 2088 2107 C5' C A 101 2106 2108 2127 C5' C A 102 2126 2128 2148 C5' A B 3 2147 2149 2170 C5' A B 4 2169 2171 2192 C5' A B 5 2191 2193 2214 C5' G B 6 2213 2215 2237 C5' G B 7 2236 2238 2260 C5' G B 8 2259 2261 2283 C5' G B 9 2282 2284 2306 C5' A B 10 2305 2307 2328 C5' G B 11 2327 2329 2351 C5' U B 12 2350 2352 2371 C5' A B 13 2370 2372 2393 C5' G B 14 2392 2394 2416 C5' C B 15 2415 2417 2436 C5' G B 16 2435 2437 2459 C5' U B 17 2458 2460 2479 C5' C B 18 2478 2480 2499 C5' G B 19 2498 2500 2522 C5' G B 20 2521 2523 2545 C5' G B 21 2544 2546 2568 C5' A B 22 2567 2569 2590 C5' A B 23 2589 2591 2612 C5' A B 24 2611 2613 2634 C5' C B 25 2633 2635 2654 C5' C B 26 2653 2655 2674 C5' G B 27 2673 2675 2697 C5' A B 28 2696 2698 2719 C5' A B 29 2718 2720 2741 C5' A B 30 2740 2742 2763 C5' C B 31 2762 2764 2783 C5' A B 32 2782 2784 2805 C5' A B 33 2804 2806 2827 C5' A B 34 2826 2828 2849 C5' G B 35 2848 2850 2872 C5' U B 36 2871 2873 2892 C5' C B 37 2891 2893 2912 C5' G B 38 2911 2913 2935 C5' U B 39 2934 2936 2955 C5' C B 40 2954 2956 2975 C5' A B 41 2974 2976 2997 C5' A B 42 2996 2998 3019 C5' U B 43 3018 3020 3039 C5' U B 44 3038 3040 3059 C5' C B 45 3058 3060 3079 C5' G B 46 3078 3080 3102 C5' U B 47 3101 3103 3122 C5' G B 48 3121 3123 3145 C5' A B 49 3144 3146 3167 C5' G B 50 3166 3168 3190 C5' G B 51 3189 3191 3213 C5' A B 52 3212 3214 3235 C5' A B 53 3234 3236 3257 C5' A B 54 3256 3258 3279 C5' C B 55 3278 3280 3299 C5' U B 56 3298 3300 3319 C5' C B 57 3318 3320 3339 C5' A B 58 3338 3340 3361 C5' C B 59 3360 3362 3381 C5' C B 60 3380 3382 3401 C5' G B 61 3400 3402 3424 C5' G B 62 3423 3425 3447 C5' C B 63 3446 3448 3467 C5' U B 64 3466 3468 3487 C5' U B 65 3486 3488 3507 C5' U B 66 3506 3508 3527 C5' G B 67 3526 3528 3550 C5' U B 68 3549 3551 3570 C5' U B 69 3569 3571 3590 C5' G B 70 3589 3591 3613 C5' A B 71 3612 3614 3635 C5' C B 72 3634 3636 3655 C5' A B 73 3654 3656 3677 C5' U B 74 3676 3678 3697 C5' A B 75 3696 3698 3719 C5' C B 76 3718 3720 3739 C5' G B 77 3738 3740 3762 C5' A B 78 3761 3763 3784 C5' A B 79 3783 3785 3806 C5' A B 80 3805 3807 3828 C5' G B 81 3827 3829 3851 C5' U B 82 3850 3852 3871 C5' A B 83 3870 3872 3893 C5' U B 84 3892 3894 3913 C5' G B 85 3912 3914 3936 C5' U B 86 3935 3937 3956 C5' U B 87 3955 3957 3976 C5' U B 88 3975 3977 3996 C5' A B 89 3995 3997 4018 C5' G B 90 4017 4019 4041 C5' C B 91 4040 4042 4061 C5' A B 92 4060 4062 4083 C5' A B 93 4082 4084 4105 C5' G B 94 4104 4106 4128 C5' A B 95 4127 4129 4150 C5' C B 96 4149 4151 4170 C5' C B 97 4169 4171 4190 C5' U B 98 4189 4191 4210 C5' U B 99 4209 4211 4230 C5' U B 100 4229 4231 4250 C5' C B 101 4249 4251 4270 C5' C B 102 4269 4271 4300 C5' GTP A 201 4299 4301 4356 C5' GTP A 226 4355 4357 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 1 P A A 3 OK OK 2 3 4 23 P A A 4 distorted distorted 9 24 25 26 45 P A A 5 distorted distorted 31 46 47 48 67 P G A 6 distorted distorted 53 68 69 70 90 P G A 7 distorted distorted 75 91 92 93 113 P G A 8 distorted distorted 98 114 115 116 136 P G A 9 distorted distorted 121 137 138 139 159 P A A 10 distorted distorted 144 160 161 162 181 P G A 11 distorted distorted 167 182 183 184 204 P U A 12 distorted distorted 189 205 206 207 224 P A A 13 distorted distorted 212 225 226 227 246 P G A 14 distorted distorted 232 247 248 249 269 P C A 15 distorted distorted 254 270 271 272 289 P G A 16 distorted distorted 277 290 291 292 312 P U A 17 distorted distorted 297 313 314 315 332 P C A 18 distorted distorted 320 333 334 335 352 P G A 19 distorted distorted 340 353 354 355 375 P G A 20 distorted distorted 360 376 377 378 398 P G A 21 distorted distorted 383 399 400 401 421 P A A 22 distorted distorted 406 422 423 424 443 P A A 23 distorted distorted 429 444 445 446 465 P A A 24 distorted distorted 451 466 467 468 487 P C A 25 distorted distorted 473 488 489 490 507 P C A 26 distorted distorted 495 508 509 510 527 P G A 27 distorted distorted 515 528 529 530 550 P A A 28 distorted distorted 535 551 552 553 572 P A A 29 distorted distorted 558 573 574 575 594 P A A 30 distorted distorted 580 595 596 597 616 P C A 31 distorted distorted 602 617 618 619 636 P A A 32 distorted distorted 624 637 638 639 658 P A A 33 distorted distorted 644 659 660 661 680 P A A 34 distorted distorted 666 681 682 683 702 P G A 35 distorted distorted 688 703 704 705 725 P U A 36 distorted distorted 710 726 727 728 745 P C A 37 distorted distorted 733 746 747 748 765 P G A 38 distorted distorted 753 766 767 768 788 P U A 39 distorted distorted 773 789 790 791 808 P C A 40 distorted distorted 796 809 810 811 828 P A A 41 distorted distorted 816 829 830 831 850 P A A 42 distorted distorted 836 851 852 853 872 P U A 43 distorted distorted 858 873 874 875 892 P U A 44 distorted distorted 880 893 894 895 912 P C A 45 distorted distorted 900 913 914 915 932 P G A 46 distorted distorted 920 933 934 935 955 P U A 47 distorted distorted 940 956 957 958 975 P G A 48 distorted distorted 963 976 977 978 998 P A A 49 distorted distorted 983 999 1000 1001 1020 P G A 50 distorted distorted 1006 1021 1022 1023 1043 P G A 51 distorted distorted 1028 1044 1045 1046 1066 P A A 52 distorted distorted 1051 1067 1068 1069 1088 P A A 53 distorted distorted 1074 1089 1090 1091 1110 P A A 54 distorted distorted 1096 1111 1112 1113 1132 P C A 55 distorted distorted 1118 1133 1134 1135 1152 P U A 56 distorted distorted 1140 1153 1154 1155 1172 P C A 57 distorted distorted 1160 1173 1174 1175 1192 P A A 58 distorted distorted 1180 1193 1194 1195 1214 P C A 59 distorted distorted 1200 1215 1216 1217 1234 P C A 60 distorted distorted 1222 1235 1236 1237 1254 P G A 61 distorted distorted 1242 1255 1256 1257 1277 P G A 62 distorted distorted 1262 1278 1279 1280 1300 P C A 63 distorted distorted 1285 1301 1302 1303 1320 P U A 64 distorted distorted 1308 1321 1322 1323 1340 P U A 65 distorted distorted 1328 1341 1342 1343 1360 P U A 66 distorted distorted 1348 1361 1362 1363 1380 P G A 67 distorted distorted 1368 1381 1382 1383 1403 P U A 68 distorted distorted 1388 1404 1405 1406 1423 P U A 69 distorted distorted 1411 1424 1425 1426 1443 P G A 70 distorted distorted 1431 1444 1445 1446 1466 P A A 71 distorted distorted 1451 1467 1468 1469 1488 P C A 72 distorted distorted 1474 1489 1490 1491 1508 P A A 73 distorted distorted 1496 1509 1510 1511 1530 P U A 74 distorted distorted 1516 1531 1532 1533 1550 P A A 75 distorted distorted 1538 1551 1552 1553 1572 P C A 76 distorted distorted 1558 1573 1574 1575 1592 P G A 77 distorted distorted 1580 1593 1594 1595 1615 P A A 78 distorted distorted 1600 1616 1617 1618 1637 P A A 79 distorted distorted 1623 1638 1639 1640 1659 P A A 80 distorted distorted 1645 1660 1661 1662 1681 P G A 81 distorted distorted 1667 1682 1683 1684 1704 P U A 82 distorted distorted 1689 1705 1706 1707 1724 P A A 83 distorted distorted 1712 1725 1726 1727 1746 P U A 84 distorted distorted 1732 1747 1748 1749 1766 P G A 85 distorted distorted 1754 1767 1768 1769 1789 P U A 86 distorted distorted 1774 1790 1791 1792 1809 P U A 87 distorted distorted 1797 1810 1811 1812 1829 P U A 88 distorted distorted 1817 1830 1831 1832 1849 P A A 89 distorted distorted 1837 1850 1851 1852 1871 P G A 90 distorted distorted 1857 1872 1873 1874 1894 P C A 91 distorted distorted 1879 1895 1896 1897 1914 P A A 92 distorted distorted 1902 1915 1916 1917 1936 P A A 93 distorted distorted 1922 1937 1938 1939 1958 P G A 94 distorted distorted 1944 1959 1960 1961 1981 P A A 95 distorted distorted 1966 1982 1983 1984 2003 P C A 96 distorted distorted 1989 2004 2005 2006 2023 P C A 97 distorted distorted 2011 2024 2025 2026 2043 P U A 98 distorted distorted 2031 2044 2045 2046 2063 P U A 99 distorted distorted 2051 2064 2065 2066 2083 P U A 100 distorted distorted 2071 2084 2085 2086 2103 P C A 101 distorted distorted 2091 2104 2105 2106 2123 P C A 102 distorted distorted 2111 2124 2125 2126 2144 P A B 3 OK OK 2145 2146 2147 2166 P A B 4 distorted distorted 2152 2167 2168 2169 2188 P A B 5 distorted distorted 2174 2189 2190 2191 2210 P G B 6 distorted distorted 2196 2211 2212 2213 2233 P G B 7 distorted distorted 2218 2234 2235 2236 2256 P G B 8 distorted distorted 2241 2257 2258 2259 2279 P G B 9 distorted distorted 2264 2280 2281 2282 2302 P A B 10 distorted distorted 2287 2303 2304 2305 2324 P G B 11 distorted distorted 2310 2325 2326 2327 2347 P U B 12 distorted distorted 2332 2348 2349 2350 2367 P A B 13 distorted distorted 2355 2368 2369 2370 2389 P G B 14 distorted distorted 2375 2390 2391 2392 2412 P C B 15 distorted distorted 2397 2413 2414 2415 2432 P G B 16 distorted distorted 2420 2433 2434 2435 2455 P U B 17 distorted distorted 2440 2456 2457 2458 2475 P C B 18 distorted distorted 2463 2476 2477 2478 2495 P G B 19 distorted distorted 2483 2496 2497 2498 2518 P G B 20 distorted distorted 2503 2519 2520 2521 2541 P G B 21 distorted distorted 2526 2542 2543 2544 2564 P A B 22 distorted distorted 2549 2565 2566 2567 2586 P A B 23 distorted distorted 2572 2587 2588 2589 2608 P A B 24 distorted distorted 2594 2609 2610 2611 2630 P C B 25 distorted distorted 2616 2631 2632 2633 2650 P C B 26 distorted distorted 2638 2651 2652 2653 2670 P G B 27 distorted distorted 2658 2671 2672 2673 2693 P A B 28 distorted distorted 2678 2694 2695 2696 2715 P A B 29 distorted distorted 2701 2716 2717 2718 2737 P A B 30 distorted distorted 2723 2738 2739 2740 2759 P C B 31 distorted distorted 2745 2760 2761 2762 2779 P A B 32 distorted distorted 2767 2780 2781 2782 2801 P A B 33 distorted distorted 2787 2802 2803 2804 2823 P A B 34 distorted distorted 2809 2824 2825 2826 2845 P G B 35 distorted distorted 2831 2846 2847 2848 2868 P U B 36 distorted distorted 2853 2869 2870 2871 2888 P C B 37 distorted distorted 2876 2889 2890 2891 2908 P G B 38 distorted distorted 2896 2909 2910 2911 2931 P U B 39 distorted distorted 2916 2932 2933 2934 2951 P C B 40 distorted distorted 2939 2952 2953 2954 2971 P A B 41 distorted distorted 2959 2972 2973 2974 2993 P A B 42 distorted distorted 2979 2994 2995 2996 3015 P U B 43 distorted distorted 3001 3016 3017 3018 3035 P U B 44 distorted distorted 3023 3036 3037 3038 3055 P C B 45 distorted distorted 3043 3056 3057 3058 3075 P G B 46 distorted distorted 3063 3076 3077 3078 3098 P U B 47 distorted distorted 3083 3099 3100 3101 3118 P G B 48 distorted distorted 3106 3119 3120 3121 3141 P A B 49 distorted distorted 3126 3142 3143 3144 3163 P G B 50 distorted distorted 3149 3164 3165 3166 3186 P G B 51 distorted distorted 3171 3187 3188 3189 3209 P A B 52 distorted distorted 3194 3210 3211 3212 3231 P A B 53 distorted distorted 3217 3232 3233 3234 3253 P A B 54 distorted distorted 3239 3254 3255 3256 3275 P C B 55 distorted distorted 3261 3276 3277 3278 3295 P U B 56 distorted distorted 3283 3296 3297 3298 3315 P C B 57 distorted distorted 3303 3316 3317 3318 3335 P A B 58 distorted distorted 3323 3336 3337 3338 3357 P C B 59 distorted distorted 3343 3358 3359 3360 3377 P C B 60 distorted distorted 3365 3378 3379 3380 3397 P G B 61 distorted distorted 3385 3398 3399 3400 3420 P G B 62 distorted distorted 3405 3421 3422 3423 3443 P C B 63 distorted distorted 3428 3444 3445 3446 3463 P U B 64 distorted distorted 3451 3464 3465 3466 3483 P U B 65 distorted distorted 3471 3484 3485 3486 3503 P U B 66 distorted distorted 3491 3504 3505 3506 3523 P G B 67 distorted distorted 3511 3524 3525 3526 3546 P U B 68 distorted distorted 3531 3547 3548 3549 3566 P U B 69 distorted distorted 3554 3567 3568 3569 3586 P G B 70 distorted distorted 3574 3587 3588 3589 3609 P A B 71 distorted distorted 3594 3610 3611 3612 3631 P C B 72 distorted distorted 3617 3632 3633 3634 3651 P A B 73 distorted distorted 3639 3652 3653 3654 3673 P U B 74 distorted distorted 3659 3674 3675 3676 3693 P A B 75 distorted distorted 3681 3694 3695 3696 3715 P C B 76 distorted distorted 3701 3716 3717 3718 3735 P G B 77 distorted distorted 3723 3736 3737 3738 3758 P A B 78 distorted distorted 3743 3759 3760 3761 3780 P A B 79 distorted distorted 3766 3781 3782 3783 3802 P A B 80 distorted distorted 3788 3803 3804 3805 3824 P G B 81 distorted distorted 3810 3825 3826 3827 3847 P U B 82 distorted distorted 3832 3848 3849 3850 3867 P A B 83 distorted distorted 3855 3868 3869 3870 3889 P U B 84 distorted distorted 3875 3890 3891 3892 3909 P G B 85 distorted distorted 3897 3910 3911 3912 3932 P U B 86 distorted distorted 3917 3933 3934 3935 3952 P U B 87 distorted distorted 3940 3953 3954 3955 3972 P U B 88 distorted distorted 3960 3973 3974 3975 3992 P A B 89 distorted distorted 3980 3993 3994 3995 4014 P G B 90 distorted distorted 4000 4015 4016 4017 4037 P C B 91 distorted distorted 4022 4038 4039 4040 4057 P A B 92 distorted distorted 4045 4058 4059 4060 4079 P A B 93 distorted distorted 4065 4080 4081 4082 4101 P G B 94 distorted distorted 4087 4102 4103 4104 4124 P A B 95 distorted distorted 4109 4125 4126 4127 4146 P C B 96 distorted distorted 4132 4147 4148 4149 4166 P C B 97 distorted distorted 4154 4167 4168 4169 4186 P U B 98 distorted distorted 4174 4187 4188 4189 4206 P U B 99 distorted distorted 4194 4207 4208 4209 4226 P U B 100 distorted distorted 4214 4227 4228 4229 4246 P C B 101 distorted distorted 4234 4247 4248 4249 4266 P C B 102 distorted distorted 4254 4267 4268 4269 ---------------------------------------------------------------------------------