ID code: '4WKJ' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 9 C1' G D 1 beta 4 10 7 32 C1' A D 2 beta 27 33 30 54 C1' C D 3 beta 49 55 52 74 C1' A D 4 beta 69 75 72 96 C1' C D 5 beta 91 97 94 116 C1' C D 6 beta 111 117 114 136 C1' U D 7 beta 131 137 134 156 C1' G D 8 beta 151 157 154 179 C1' A D 9 beta 174 180 177 201 C1' U D 10 beta 196 202 199 221 C1' U D 11 beta 216 222 219 241 C1' C D 12 beta 236 242 239 258 C1' DG E 1 beta 254 259 257 280 C1' DA E 2 beta 276 281 279 301 C1' DA E 3 beta 297 302 300 322 C1' DT E 4 beta 318 323 321 342 C1' DC E 5 beta 338 343 341 361 C1' DA E 6 beta 357 362 360 382 C1' DG E 7 beta 378 383 381 404 C1' DG E 8 beta 400 405 403 426 C1' DT E 9 beta 422 427 425 446 C1' DG E 10 beta 442 447 445 468 C1' DT E 11 beta 464 469 467 488 C1' DC E 12 beta 484 489 487 506 C1' G A 1 beta 501 507 504 529 C1' A A 2 beta 524 530 527 551 C1' C A 3 beta 546 552 549 571 C1' A A 4 beta 566 572 569 593 C1' C A 5 beta 588 594 591 613 C1' C A 6 beta 608 614 611 633 C1' U A 7 beta 628 634 631 653 C1' G A 8 beta 648 654 651 676 C1' A A 9 beta 671 677 674 698 C1' U A 10 beta 693 699 696 718 C1' U A 11 beta 713 719 716 738 C1' C A 12 beta 733 739 736 755 C1' DG B 1 beta 751 756 754 777 C1' DA B 2 beta 773 778 776 798 C1' DA B 3 beta 794 799 797 819 C1' DT B 4 beta 815 820 818 839 C1' DC B 5 beta 835 840 838 858 C1' DA B 6 beta 854 859 857 879 C1' DG B 7 beta 875 880 878 901 C1' DG B 8 beta 897 902 900 923 C1' DT B 9 beta 919 924 922 943 C1' DG B 10 beta 939 944 942 965 C1' DT B 11 beta 961 966 964 985 C1' DC B 12 beta 981 986 984 1003 C1' G C 1 beta 998 1004 1001 1026 C1' A C 2 beta 1021 1027 1024 1048 C1' C C 3 beta 1043 1049 1046 1068 C1' A C 4 beta 1063 1069 1066 1090 C1' C C 5 beta 1085 1091 1088 1110 C1' C C 6 beta 1105 1111 1108 1130 C1' U C 7 beta 1125 1131 1128 1150 C1' G C 8 beta 1145 1151 1148 1173 C1' A C 9 beta 1168 1174 1171 1195 C1' U C 10 beta 1190 1196 1193 1215 C1' U C 11 beta 1210 1216 1213 1235 C1' C C 12 beta 1230 1236 1233 1252 C1' DG F 1 beta 1248 1253 1251 1274 C1' DA F 2 beta 1270 1275 1273 1295 C1' DA F 3 beta 1291 1296 1294 1316 C1' DT F 4 beta 1312 1317 1315 1336 C1' DC F 5 beta 1332 1337 1335 1355 C1' DA F 6 beta 1351 1356 1354 1376 C1' DG F 7 beta 1372 1377 1375 1398 C1' DG F 8 beta 1394 1399 1397 1420 C1' DT F 9 beta 1416 1421 1419 1440 C1' DG F 10 beta 1436 1441 1439 1462 C1' DT F 11 beta 1458 1463 1461 1482 C1' DC F 12 beta 1478 1483 1481 1500 C1' G G 1 beta 1495 1501 1498 1523 C1' A G 2 beta 1518 1524 1521 1545 C1' C G 3 beta 1540 1546 1543 1565 C1' A G 4 beta 1560 1566 1563 1587 C1' C G 5 beta 1582 1588 1585 1607 C1' C G 6 beta 1602 1608 1605 1627 C1' U G 7 beta 1622 1628 1625 1647 C1' G G 8 beta 1642 1648 1645 1670 C1' A G 9 beta 1665 1671 1668 1692 C1' U G 10 beta 1687 1693 1690 1712 C1' U G 11 beta 1707 1713 1710 1732 C1' C G 12 beta 1727 1733 1730 1749 C1' DG H 1 beta 1745 1750 1748 1771 C1' DA H 2 beta 1767 1772 1770 1792 C1' DA H 3 beta 1788 1793 1791 1813 C1' DT H 4 beta 1809 1814 1812 1833 C1' DC H 5 beta 1829 1834 1832 1852 C1' DA H 6 beta 1848 1853 1851 1873 C1' DG H 7 beta 1869 1874 1872 1895 C1' DG H 8 beta 1891 1896 1894 1917 C1' DT H 9 beta 1913 1918 1916 1937 C1' DG H 10 beta 1933 1938 1936 1959 C1' DT H 11 beta 1955 1960 1958 1979 C1' DC H 12 beta 1975 1980 1978 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 7 C2' G D 1 OK 9 5 8 30 C2' A D 2 OK 32 28 31 52 C2' C D 3 OK 54 50 53 72 C2' A D 4 OK 74 70 73 94 C2' C D 5 OK 96 92 95 114 C2' C D 6 OK 116 112 115 134 C2' U D 7 OK 136 132 135 154 C2' G D 8 OK 156 152 155 177 C2' A D 9 OK 179 175 178 199 C2' U D 10 OK 201 197 200 219 C2' U D 11 OK 221 217 220 239 C2' C D 12 OK 241 237 240 257 C2' DG E 1 258 255 279 C2' DA E 2 280 277 300 C2' DA E 3 301 298 321 C2' DT E 4 322 319 341 C2' DC E 5 342 339 360 C2' DA E 6 361 358 381 C2' DG E 7 382 379 403 C2' DG E 8 404 401 425 C2' DT E 9 426 423 445 C2' DG E 10 446 443 467 C2' DT E 11 468 465 487 C2' DC E 12 488 485 504 C2' G A 1 OK 506 502 505 527 C2' A A 2 OK 529 525 528 549 C2' C A 3 OK 551 547 550 569 C2' A A 4 OK 571 567 570 591 C2' C A 5 OK 593 589 592 611 C2' C A 6 OK 613 609 612 631 C2' U A 7 OK 633 629 632 651 C2' G A 8 OK 653 649 652 674 C2' A A 9 OK 676 672 675 696 C2' U A 10 OK 698 694 697 716 C2' U A 11 OK 718 714 717 736 C2' C A 12 OK 738 734 737 754 C2' DG B 1 755 752 776 C2' DA B 2 777 774 797 C2' DA B 3 798 795 818 C2' DT B 4 819 816 838 C2' DC B 5 839 836 857 C2' DA B 6 858 855 878 C2' DG B 7 879 876 900 C2' DG B 8 901 898 922 C2' DT B 9 923 920 942 C2' DG B 10 943 940 964 C2' DT B 11 965 962 984 C2' DC B 12 985 982 1001 C2' G C 1 OK 1003 999 1002 1024 C2' A C 2 OK 1026 1022 1025 1046 C2' C C 3 OK 1048 1044 1047 1066 C2' A C 4 OK 1068 1064 1067 1088 C2' C C 5 OK 1090 1086 1089 1108 C2' C C 6 OK 1110 1106 1109 1128 C2' U C 7 OK 1130 1126 1129 1148 C2' G C 8 OK 1150 1146 1149 1171 C2' A C 9 OK 1173 1169 1172 1193 C2' U C 10 OK 1195 1191 1194 1213 C2' U C 11 OK 1215 1211 1214 1233 C2' C C 12 OK 1235 1231 1234 1251 C2' DG F 1 1252 1249 1273 C2' DA F 2 1274 1271 1294 C2' DA F 3 1295 1292 1315 C2' DT F 4 1316 1313 1335 C2' DC F 5 1336 1333 1354 C2' DA F 6 1355 1352 1375 C2' DG F 7 1376 1373 1397 C2' DG F 8 1398 1395 1419 C2' DT F 9 1420 1417 1439 C2' DG F 10 1440 1437 1461 C2' DT F 11 1462 1459 1481 C2' DC F 12 1482 1479 1498 C2' G G 1 OK 1500 1496 1499 1521 C2' A G 2 OK 1523 1519 1522 1543 C2' C G 3 OK 1545 1541 1544 1563 C2' A G 4 OK 1565 1561 1564 1585 C2' C G 5 OK 1587 1583 1586 1605 C2' C G 6 OK 1607 1603 1606 1625 C2' U G 7 OK 1627 1623 1626 1645 C2' G G 8 OK 1647 1643 1646 1668 C2' A G 9 OK 1670 1666 1669 1690 C2' U G 10 OK 1692 1688 1691 1710 C2' U G 11 OK 1712 1708 1711 1730 C2' C G 12 OK 1732 1728 1731 1748 C2' DG H 1 1749 1746 1770 C2' DA H 2 1771 1768 1791 C2' DA H 3 1792 1789 1812 C2' DT H 4 1813 1810 1832 C2' DC H 5 1833 1830 1851 C2' DA H 6 1852 1849 1872 C2' DG H 7 1873 1870 1894 C2' DG H 8 1895 1892 1916 C2' DT H 9 1917 1914 1936 C2' DG H 10 1937 1934 1958 C2' DT H 11 1959 1956 1978 C2' DC H 12 1979 1976 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 5 C3' G D 1 OK 3 6 7 28 C3' A D 2 OK 26 29 30 50 C3' C D 3 OK 48 51 52 70 C3' A D 4 OK 68 71 72 92 C3' C D 5 OK 90 93 94 112 C3' C D 6 OK 110 113 114 132 C3' U D 7 OK 130 133 134 152 C3' G D 8 OK 150 153 154 175 C3' A D 9 OK 173 176 177 197 C3' U D 10 OK 195 198 199 217 C3' U D 11 OK 215 218 219 237 C3' C D 12 OK 235 238 239 255 C3' DG E 1 OK 253 256 257 277 C3' DA E 2 OK 275 278 279 298 C3' DA E 3 OK 296 299 300 319 C3' DT E 4 OK 317 320 321 339 C3' DC E 5 OK 337 340 341 358 C3' DA E 6 OK 356 359 360 379 C3' DG E 7 OK 377 380 381 401 C3' DG E 8 OK 399 402 403 423 C3' DT E 9 OK 421 424 425 443 C3' DG E 10 OK 441 444 445 465 C3' DT E 11 OK 463 466 467 485 C3' DC E 12 OK 483 486 487 502 C3' G A 1 OK 500 503 504 525 C3' A A 2 OK 523 526 527 547 C3' C A 3 OK 545 548 549 567 C3' A A 4 OK 565 568 569 589 C3' C A 5 OK 587 590 591 609 C3' C A 6 OK 607 610 611 629 C3' U A 7 OK 627 630 631 649 C3' G A 8 OK 647 650 651 672 C3' A A 9 OK 670 673 674 694 C3' U A 10 OK 692 695 696 714 C3' U A 11 OK 712 715 716 734 C3' C A 12 OK 732 735 736 752 C3' DG B 1 OK 750 753 754 774 C3' DA B 2 OK 772 775 776 795 C3' DA B 3 OK 793 796 797 816 C3' DT B 4 OK 814 817 818 836 C3' DC B 5 OK 834 837 838 855 C3' DA B 6 OK 853 856 857 876 C3' DG B 7 OK 874 877 878 898 C3' DG B 8 OK 896 899 900 920 C3' DT B 9 OK 918 921 922 940 C3' DG B 10 OK 938 941 942 962 C3' DT B 11 OK 960 963 964 982 C3' DC B 12 OK 980 983 984 999 C3' G C 1 OK 997 1000 1001 1022 C3' A C 2 OK 1020 1023 1024 1044 C3' C C 3 OK 1042 1045 1046 1064 C3' A C 4 OK 1062 1065 1066 1086 C3' C C 5 OK 1084 1087 1088 1106 C3' C C 6 OK 1104 1107 1108 1126 C3' U C 7 OK 1124 1127 1128 1146 C3' G C 8 OK 1144 1147 1148 1169 C3' A C 9 OK 1167 1170 1171 1191 C3' U C 10 OK 1189 1192 1193 1211 C3' U C 11 OK 1209 1212 1213 1231 C3' C C 12 OK 1229 1232 1233 1249 C3' DG F 1 OK 1247 1250 1251 1271 C3' DA F 2 OK 1269 1272 1273 1292 C3' DA F 3 OK 1290 1293 1294 1313 C3' DT F 4 OK 1311 1314 1315 1333 C3' DC F 5 OK 1331 1334 1335 1352 C3' DA F 6 OK 1350 1353 1354 1373 C3' DG F 7 OK 1371 1374 1375 1395 C3' DG F 8 OK 1393 1396 1397 1417 C3' DT F 9 OK 1415 1418 1419 1437 C3' DG F 10 OK 1435 1438 1439 1459 C3' DT F 11 OK 1457 1460 1461 1479 C3' DC F 12 OK 1477 1480 1481 1496 C3' G G 1 OK 1494 1497 1498 1519 C3' A G 2 OK 1517 1520 1521 1541 C3' C G 3 OK 1539 1542 1543 1561 C3' A G 4 OK 1559 1562 1563 1583 C3' C G 5 OK 1581 1584 1585 1603 C3' C G 6 OK 1601 1604 1605 1623 C3' U G 7 OK 1621 1624 1625 1643 C3' G G 8 OK 1641 1644 1645 1666 C3' A G 9 OK 1664 1667 1668 1688 C3' U G 10 OK 1686 1689 1690 1708 C3' U G 11 OK 1706 1709 1710 1728 C3' C G 12 OK 1726 1729 1730 1746 C3' DG H 1 OK 1744 1747 1748 1768 C3' DA H 2 OK 1766 1769 1770 1789 C3' DA H 3 OK 1787 1790 1791 1810 C3' DT H 4 OK 1808 1811 1812 1830 C3' DC H 5 OK 1828 1831 1832 1849 C3' DA H 6 OK 1847 1850 1851 1870 C3' DG H 7 OK 1868 1871 1872 1892 C3' DG H 8 OK 1890 1893 1894 1914 C3' DT H 9 OK 1912 1915 1916 1934 C3' DG H 10 OK 1932 1935 1936 1956 C3' DT H 11 OK 1954 1957 1958 1976 C3' DC H 12 OK 1974 1977 1978 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 3 C4' G D 1 OK 5 2 4 26 C4' A D 2 OK 28 25 27 48 C4' C D 3 OK 50 47 49 68 C4' A D 4 OK 70 67 69 90 C4' C D 5 OK 92 89 91 110 C4' C D 6 OK 112 109 111 130 C4' U D 7 OK 132 129 131 150 C4' G D 8 OK 152 149 151 173 C4' A D 9 OK 175 172 174 195 C4' U D 10 OK 197 194 196 215 C4' U D 11 OK 217 214 216 235 C4' C D 12 OK 237 234 236 253 C4' DG E 1 OK 255 252 254 275 C4' DA E 2 OK 277 274 276 296 C4' DA E 3 OK 298 295 297 317 C4' DT E 4 OK 319 316 318 337 C4' DC E 5 OK 339 336 338 356 C4' DA E 6 OK 358 355 357 377 C4' DG E 7 OK 379 376 378 399 C4' DG E 8 OK 401 398 400 421 C4' DT E 9 OK 423 420 422 441 C4' DG E 10 OK 443 440 442 463 C4' DT E 11 OK 465 462 464 483 C4' DC E 12 OK 485 482 484 500 C4' G A 1 OK 502 499 501 523 C4' A A 2 OK 525 522 524 545 C4' C A 3 OK 547 544 546 565 C4' A A 4 OK 567 564 566 587 C4' C A 5 OK 589 586 588 607 C4' C A 6 OK 609 606 608 627 C4' U A 7 OK 629 626 628 647 C4' G A 8 OK 649 646 648 670 C4' A A 9 OK 672 669 671 692 C4' U A 10 OK 694 691 693 712 C4' U A 11 OK 714 711 713 732 C4' C A 12 OK 734 731 733 750 C4' DG B 1 OK 752 749 751 772 C4' DA B 2 OK 774 771 773 793 C4' DA B 3 OK 795 792 794 814 C4' DT B 4 OK 816 813 815 834 C4' DC B 5 OK 836 833 835 853 C4' DA B 6 OK 855 852 854 874 C4' DG B 7 OK 876 873 875 896 C4' DG B 8 OK 898 895 897 918 C4' DT B 9 OK 920 917 919 938 C4' DG B 10 OK 940 937 939 960 C4' DT B 11 OK 962 959 961 980 C4' DC B 12 OK 982 979 981 997 C4' G C 1 OK 999 996 998 1020 C4' A C 2 OK 1022 1019 1021 1042 C4' C C 3 OK 1044 1041 1043 1062 C4' A C 4 OK 1064 1061 1063 1084 C4' C C 5 OK 1086 1083 1085 1104 C4' C C 6 OK 1106 1103 1105 1124 C4' U C 7 OK 1126 1123 1125 1144 C4' G C 8 OK 1146 1143 1145 1167 C4' A C 9 OK 1169 1166 1168 1189 C4' U C 10 OK 1191 1188 1190 1209 C4' U C 11 OK 1211 1208 1210 1229 C4' C C 12 OK 1231 1228 1230 1247 C4' DG F 1 OK 1249 1246 1248 1269 C4' DA F 2 OK 1271 1268 1270 1290 C4' DA F 3 OK 1292 1289 1291 1311 C4' DT F 4 OK 1313 1310 1312 1331 C4' DC F 5 OK 1333 1330 1332 1350 C4' DA F 6 OK 1352 1349 1351 1371 C4' DG F 7 OK 1373 1370 1372 1393 C4' DG F 8 OK 1395 1392 1394 1415 C4' DT F 9 OK 1417 1414 1416 1435 C4' DG F 10 OK 1437 1434 1436 1457 C4' DT F 11 OK 1459 1456 1458 1477 C4' DC F 12 OK 1479 1476 1478 1494 C4' G G 1 OK 1496 1493 1495 1517 C4' A G 2 OK 1519 1516 1518 1539 C4' C G 3 OK 1541 1538 1540 1559 C4' A G 4 OK 1561 1558 1560 1581 C4' C G 5 OK 1583 1580 1582 1601 C4' C G 6 OK 1603 1600 1602 1621 C4' U G 7 OK 1623 1620 1622 1641 C4' G G 8 OK 1643 1640 1642 1664 C4' A G 9 OK 1666 1663 1665 1686 C4' U G 10 OK 1688 1685 1687 1706 C4' U G 11 OK 1708 1705 1707 1726 C4' C G 12 OK 1728 1725 1727 1744 C4' DG H 1 OK 1746 1743 1745 1766 C4' DA H 2 OK 1768 1765 1767 1787 C4' DA H 3 OK 1789 1786 1788 1808 C4' DT H 4 OK 1810 1807 1809 1828 C4' DC H 5 OK 1830 1827 1829 1847 C4' DA H 6 OK 1849 1846 1848 1868 C4' DG H 7 OK 1870 1867 1869 1890 C4' DG H 8 OK 1892 1889 1891 1912 C4' DT H 9 OK 1914 1911 1913 1932 C4' DG H 10 OK 1934 1931 1933 1954 C4' DT H 11 OK 1956 1953 1955 1974 C4' DC H 12 OK 1976 1973 1975 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 2 C5' G D 1 1 3 25 C5' A D 2 24 26 47 C5' C D 3 46 48 67 C5' A D 4 66 68 89 C5' C D 5 88 90 109 C5' C D 6 108 110 129 C5' U D 7 128 130 149 C5' G D 8 148 150 172 C5' A D 9 171 173 194 C5' U D 10 193 195 214 C5' U D 11 213 215 234 C5' C D 12 233 235 252 C5' DG E 1 251 253 274 C5' DA E 2 273 275 295 C5' DA E 3 294 296 316 C5' DT E 4 315 317 336 C5' DC E 5 335 337 355 C5' DA E 6 354 356 376 C5' DG E 7 375 377 398 C5' DG E 8 397 399 420 C5' DT E 9 419 421 440 C5' DG E 10 439 441 462 C5' DT E 11 461 463 482 C5' DC E 12 481 483 499 C5' G A 1 498 500 522 C5' A A 2 521 523 544 C5' C A 3 543 545 564 C5' A A 4 563 565 586 C5' C A 5 585 587 606 C5' C A 6 605 607 626 C5' U A 7 625 627 646 C5' G A 8 645 647 669 C5' A A 9 668 670 691 C5' U A 10 690 692 711 C5' U A 11 710 712 731 C5' C A 12 730 732 749 C5' DG B 1 748 750 771 C5' DA B 2 770 772 792 C5' DA B 3 791 793 813 C5' DT B 4 812 814 833 C5' DC B 5 832 834 852 C5' DA B 6 851 853 873 C5' DG B 7 872 874 895 C5' DG B 8 894 896 917 C5' DT B 9 916 918 937 C5' DG B 10 936 938 959 C5' DT B 11 958 960 979 C5' DC B 12 978 980 996 C5' G C 1 995 997 1019 C5' A C 2 1018 1020 1041 C5' C C 3 1040 1042 1061 C5' A C 4 1060 1062 1083 C5' C C 5 1082 1084 1103 C5' C C 6 1102 1104 1123 C5' U C 7 1122 1124 1143 C5' G C 8 1142 1144 1166 C5' A C 9 1165 1167 1188 C5' U C 10 1187 1189 1208 C5' U C 11 1207 1209 1228 C5' C C 12 1227 1229 1246 C5' DG F 1 1245 1247 1268 C5' DA F 2 1267 1269 1289 C5' DA F 3 1288 1290 1310 C5' DT F 4 1309 1311 1330 C5' DC F 5 1329 1331 1349 C5' DA F 6 1348 1350 1370 C5' DG F 7 1369 1371 1392 C5' DG F 8 1391 1393 1414 C5' DT F 9 1413 1415 1434 C5' DG F 10 1433 1435 1456 C5' DT F 11 1455 1457 1476 C5' DC F 12 1475 1477 1493 C5' G G 1 1492 1494 1516 C5' A G 2 1515 1517 1538 C5' C G 3 1537 1539 1558 C5' A G 4 1557 1559 1580 C5' C G 5 1579 1581 1600 C5' C G 6 1599 1601 1620 C5' U G 7 1619 1621 1640 C5' G G 8 1639 1641 1663 C5' A G 9 1662 1664 1685 C5' U G 10 1684 1686 1705 C5' U G 11 1704 1706 1725 C5' C G 12 1724 1726 1743 C5' DG H 1 1742 1744 1765 C5' DA H 2 1764 1766 1786 C5' DA H 3 1785 1787 1807 C5' DT H 4 1806 1808 1827 C5' DC H 5 1826 1828 1846 C5' DA H 6 1845 1847 1867 C5' DG H 7 1866 1868 1889 C5' DG H 8 1888 1890 1911 C5' DT H 9 1910 1912 1931 C5' DG H 10 1930 1932 1953 C5' DT H 11 1952 1954 1973 C5' DC H 12 1972 1974 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 21 P A D 2 distorted distorted 6 22 23 24 43 P C D 3 distorted distorted 29 44 45 46 63 P A D 4 distorted distorted 51 64 65 66 85 P C D 5 distorted distorted 71 86 87 88 105 P C D 6 distorted distorted 93 106 107 108 125 P U D 7 distorted distorted 113 126 127 128 145 P G D 8 distorted distorted 133 146 147 148 168 P A D 9 distorted distorted 153 169 170 171 190 P U D 10 distorted distorted 176 191 192 193 210 P U D 11 distorted distorted 198 211 212 213 230 P C D 12 distorted distorted 218 231 232 233 270 P DA E 2 distorted distorted 256 271 272 273 291 P DA E 3 distorted distorted 278 292 293 294 312 P DT E 4 distorted distorted 299 313 314 315 332 P DC E 5 distorted distorted 320 333 334 335 351 P DA E 6 distorted distorted 340 352 353 354 372 P DG E 7 distorted distorted 359 373 374 375 394 P DG E 8 distorted distorted 380 395 396 397 416 P DT E 9 distorted distorted 402 417 418 419 436 P DG E 10 distorted distorted 424 437 438 439 458 P DT E 11 distorted distorted 444 459 460 461 478 P DC E 12 distorted distorted 466 479 480 481 518 P A A 2 distorted distorted 503 519 520 521 540 P C A 3 distorted distorted 526 541 542 543 560 P A A 4 distorted distorted 548 561 562 563 582 P C A 5 distorted distorted 568 583 584 585 602 P C A 6 distorted distorted 590 603 604 605 622 P U A 7 distorted distorted 610 623 624 625 642 P G A 8 distorted distorted 630 643 644 645 665 P A A 9 distorted distorted 650 666 667 668 687 P U A 10 distorted distorted 673 688 689 690 707 P U A 11 distorted distorted 695 708 709 710 727 P C A 12 distorted distorted 715 728 729 730 767 P DA B 2 distorted distorted 753 768 769 770 788 P DA B 3 distorted distorted 775 789 790 791 809 P DT B 4 distorted distorted 796 810 811 812 829 P DC B 5 distorted distorted 817 830 831 832 848 P DA B 6 distorted distorted 837 849 850 851 869 P DG B 7 distorted distorted 856 870 871 872 891 P DG B 8 distorted distorted 877 892 893 894 913 P DT B 9 distorted distorted 899 914 915 916 933 P DG B 10 distorted distorted 921 934 935 936 955 P DT B 11 distorted distorted 941 956 957 958 975 P DC B 12 distorted distorted 963 976 977 978 1015 P A C 2 distorted distorted 1000 1016 1017 1018 1037 P C C 3 distorted distorted 1023 1038 1039 1040 1057 P A C 4 distorted distorted 1045 1058 1059 1060 1079 P C C 5 distorted distorted 1065 1080 1081 1082 1099 P C C 6 distorted distorted 1087 1100 1101 1102 1119 P U C 7 distorted distorted 1107 1120 1121 1122 1139 P G C 8 distorted distorted 1127 1140 1141 1142 1162 P A C 9 distorted distorted 1147 1163 1164 1165 1184 P U C 10 distorted distorted 1170 1185 1186 1187 1204 P U C 11 distorted distorted 1192 1205 1206 1207 1224 P C C 12 distorted distorted 1212 1225 1226 1227 1264 P DA F 2 distorted distorted 1250 1265 1266 1267 1285 P DA F 3 distorted distorted 1272 1286 1287 1288 1306 P DT F 4 distorted distorted 1293 1307 1308 1309 1326 P DC F 5 distorted distorted 1314 1327 1328 1329 1345 P DA F 6 distorted distorted 1334 1346 1347 1348 1366 P DG F 7 distorted distorted 1353 1367 1368 1369 1388 P DG F 8 distorted distorted 1374 1389 1390 1391 1410 P DT F 9 distorted distorted 1396 1411 1412 1413 1430 P DG F 10 distorted distorted 1418 1431 1432 1433 1452 P DT F 11 distorted distorted 1438 1453 1454 1455 1472 P DC F 12 distorted distorted 1460 1473 1474 1475 1512 P A G 2 distorted distorted 1497 1513 1514 1515 1534 P C G 3 distorted distorted 1520 1535 1536 1537 1554 P A G 4 distorted distorted 1542 1555 1556 1557 1576 P C G 5 distorted distorted 1562 1577 1578 1579 1596 P C G 6 distorted distorted 1584 1597 1598 1599 1616 P U G 7 distorted distorted 1604 1617 1618 1619 1636 P G G 8 distorted distorted 1624 1637 1638 1639 1659 P A G 9 distorted distorted 1644 1660 1661 1662 1681 P U G 10 distorted distorted 1667 1682 1683 1684 1701 P U G 11 distorted distorted 1689 1702 1703 1704 1721 P C G 12 distorted distorted 1709 1722 1723 1724 1761 P DA H 2 distorted distorted 1747 1762 1763 1764 1782 P DA H 3 distorted distorted 1769 1783 1784 1785 1803 P DT H 4 distorted distorted 1790 1804 1805 1806 1823 P DC H 5 distorted distorted 1811 1824 1825 1826 1842 P DA H 6 distorted distorted 1831 1843 1844 1845 1863 P DG H 7 distorted distorted 1850 1864 1865 1866 1885 P DG H 8 distorted distorted 1871 1886 1887 1888 1907 P DT H 9 distorted distorted 1893 1908 1909 1910 1927 P DG H 10 distorted distorted 1915 1928 1929 1930 1949 P DT H 11 distorted distorted 1935 1950 1951 1952 1969 P DC H 12 distorted distorted 1957 1970 1971 1972 ---------------------------------------------------------------------------------