ID code: '4WFL' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 21 C1' GTP A 3 beta 16 22 19 44 C1' G A 4 beta 39 45 42 67 C1' C A 5 beta 62 68 65 87 C1' C A 6 beta 82 88 85 107 C1' G A 7 beta 102 108 105 130 C1' U A 8 beta 125 131 128 150 C1' G A 9 beta 145 151 148 173 C1' C A 10 beta 168 174 171 193 C1' U A 11 beta 188 194 191 213 C1' A A 12 beta 208 214 211 235 C1' A A 13 beta 230 236 233 257 C1' G A 14 beta 252 258 255 280 C1' C A 15 beta 275 281 278 300 C1' G A 16 beta 295 301 298 323 C1' G A 17 beta 318 324 321 346 C1' G A 18 beta 341 347 344 369 C1' G A 19 beta 364 370 367 392 C1' A A 20 beta 387 393 390 414 C1' G A 21 beta 409 415 412 437 C1' G A 22 beta 432 438 435 460 C1' U A 23 beta 455 461 458 480 C1' A A 24 beta 475 481 478 502 C1' G A 25 beta 497 503 500 525 C1' C A 26 beta 520 526 523 545 C1' G A 27 beta 540 546 543 568 C1' G A 28 beta 563 569 566 591 C1' U A 29 beta 586 592 589 611 C1' G A 30 beta 606 612 609 634 C1' C A 31 beta 629 635 632 654 C1' C A 32 beta 649 655 652 674 C1' C A 33 beta 669 675 672 694 C1' U A 34 beta 689 695 692 714 C1' G A 35 beta 709 715 712 737 C1' U A 36 beta 732 738 735 757 C1' A A 37 beta 752 758 755 779 C1' C A 38 beta 774 780 777 799 C1' C A 39 beta 794 800 797 819 C1' U A 40 beta 814 820 817 839 C1' G A 41 beta 834 840 837 862 C1' C A 42 beta 857 863 860 882 C1' A A 43 beta 877 883 880 904 C1' A A 44 beta 899 905 902 926 C1' U A 45 beta 921 927 924 946 C1' C A 46 beta 941 947 944 966 C1' C A 47 beta 961 967 964 986 C1' G A 48 beta 981 987 984 1009 C1' C A 49 beta 1004 1010 1007 1029 C1' U A 50 beta 1024 1030 1027 1049 C1' C A 51 beta 1044 1050 1047 1069 C1' U A 52 beta 1064 1070 1067 1089 C1' A A 53 beta 1084 1090 1087 1111 C1' G A 54 beta 1106 1112 1109 1134 C1' C A 55 beta 1129 1135 1132 1154 C1' A A 56 beta 1149 1155 1152 1176 C1' G A 57 beta 1171 1177 1174 1199 C1' G A 58 beta 1194 1200 1197 1222 C1' G A 59 beta 1217 1223 1220 1245 C1' C A 60 beta 1240 1246 1243 1265 C1' C A 61 beta 1260 1266 1263 1285 C1' G A 62 beta 1280 1286 1283 1308 C1' A A 63 beta 1303 1309 1306 1330 C1' A A 64 beta 1325 1331 1328 1352 C1' U A 65 beta 1347 1353 1350 1372 C1' C A 66 beta 1367 1373 1370 1392 C1' C A 67 beta 1387 1393 1390 1412 C1' C A 68 beta 1407 1413 1410 1432 C1' U A 69 beta 1427 1433 1430 1452 C1' U A 70 beta 1447 1453 1450 1472 C1' C A 71 beta 1467 1473 1470 1492 C1' U A 72 beta 1487 1493 1490 1512 C1' C A 73 beta 1507 1513 1510 1532 C1' G A 74 beta 1527 1533 1530 1555 C1' A A 75 beta 1550 1556 1553 1577 C1' G A 76 beta 1572 1578 1575 1600 C1' G A 77 beta 1595 1601 1598 1623 C1' U A 78 beta 1618 1624 1621 1643 C1' U A 79 beta 1638 1644 1641 1663 C1' C A 80 beta 1658 1664 1661 1683 C1' G A 81 beta 1678 1684 1681 1706 C1' G A 82 beta 1701 1707 1704 1729 C1' U A 83 beta 1724 1730 1727 1749 C1' A A 84 beta 1744 1750 1747 1771 C1' A A 85 beta 1766 1772 1769 1793 C1' C A 86 beta 1788 1794 1791 1813 C1' G A 87 beta 1808 1814 1811 1836 C1' A A 88 beta 1831 1837 1834 1858 C1' A A 89 beta 1853 1859 1856 1880 C1' U A 90 beta 1875 1881 1878 1900 C1' C A 91 beta 1895 1901 1898 1920 C1' G A 92 beta 1915 1921 1918 1943 C1' A A 93 beta 1938 1944 1941 1965 C1' C A 94 beta 1960 1966 1963 1985 C1' A A 95 beta 1980 1986 1983 2007 C1' G A 96 beta 2002 2008 2005 2030 C1' A A 97 beta 2025 2031 2028 2052 C1' A A 98 beta 2047 2053 2050 2074 C1' G A 99 beta 2069 2075 2072 2097 C1' G A 100 beta 2092 2098 2095 2120 C1' U A 101 beta 2115 2121 2118 2140 C1' G A 102 beta 2135 2141 2138 2163 C1' C A 103 beta 2158 2164 2161 2183 C1' A A 104 beta 2178 2184 2181 2205 C1' C A 105 beta 2200 2206 2203 2225 C1' G A 106 beta 2220 2226 2223 2248 C1' G A 107 beta 2243 2249 2246 2271 C1' U A 108 beta 2266 2272 2269 2294 C1' CCC A 109 beta 2289 2295 2292 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 19 C2' GTP A 3 OK 21 17 20 42 C2' G A 4 OK 44 40 43 65 C2' C A 5 OK 67 63 66 85 C2' C A 6 OK 87 83 86 105 C2' G A 7 OK 107 103 106 128 C2' U A 8 OK 130 126 129 148 C2' G A 9 OK 150 146 149 171 C2' C A 10 OK 173 169 172 191 C2' U A 11 OK 193 189 192 211 C2' A A 12 OK 213 209 212 233 C2' A A 13 OK 235 231 234 255 C2' G A 14 OK 257 253 256 278 C2' C A 15 OK 280 276 279 298 C2' G A 16 OK 300 296 299 321 C2' G A 17 OK 323 319 322 344 C2' G A 18 OK 346 342 345 367 C2' G A 19 OK 369 365 368 390 C2' A A 20 OK 392 388 391 412 C2' G A 21 OK 414 410 413 435 C2' G A 22 OK 437 433 436 458 C2' U A 23 OK 460 456 459 478 C2' A A 24 OK 480 476 479 500 C2' G A 25 OK 502 498 501 523 C2' C A 26 OK 525 521 524 543 C2' G A 27 OK 545 541 544 566 C2' G A 28 OK 568 564 567 589 C2' U A 29 OK 591 587 590 609 C2' G A 30 OK 611 607 610 632 C2' C A 31 OK 634 630 633 652 C2' C A 32 OK 654 650 653 672 C2' C A 33 OK 674 670 673 692 C2' U A 34 OK 694 690 693 712 C2' G A 35 OK 714 710 713 735 C2' U A 36 OK 737 733 736 755 C2' A A 37 OK 757 753 756 777 C2' C A 38 OK 779 775 778 797 C2' C A 39 OK 799 795 798 817 C2' U A 40 OK 819 815 818 837 C2' G A 41 OK 839 835 838 860 C2' C A 42 OK 862 858 861 880 C2' A A 43 OK 882 878 881 902 C2' A A 44 OK 904 900 903 924 C2' U A 45 OK 926 922 925 944 C2' C A 46 OK 946 942 945 964 C2' C A 47 OK 966 962 965 984 C2' G A 48 OK 986 982 985 1007 C2' C A 49 OK 1009 1005 1008 1027 C2' U A 50 OK 1029 1025 1028 1047 C2' C A 51 OK 1049 1045 1048 1067 C2' U A 52 OK 1069 1065 1068 1087 C2' A A 53 OK 1089 1085 1088 1109 C2' G A 54 OK 1111 1107 1110 1132 C2' C A 55 OK 1134 1130 1133 1152 C2' A A 56 OK 1154 1150 1153 1174 C2' G A 57 OK 1176 1172 1175 1197 C2' G A 58 OK 1199 1195 1198 1220 C2' G A 59 OK 1222 1218 1221 1243 C2' C A 60 OK 1245 1241 1244 1263 C2' C A 61 OK 1265 1261 1264 1283 C2' G A 62 OK 1285 1281 1284 1306 C2' A A 63 OK 1308 1304 1307 1328 C2' A A 64 OK 1330 1326 1329 1350 C2' U A 65 OK 1352 1348 1351 1370 C2' C A 66 OK 1372 1368 1371 1390 C2' C A 67 OK 1392 1388 1391 1410 C2' C A 68 OK 1412 1408 1411 1430 C2' U A 69 OK 1432 1428 1431 1450 C2' U A 70 OK 1452 1448 1451 1470 C2' C A 71 OK 1472 1468 1471 1490 C2' U A 72 OK 1492 1488 1491 1510 C2' C A 73 OK 1512 1508 1511 1530 C2' G A 74 OK 1532 1528 1531 1553 C2' A A 75 OK 1555 1551 1554 1575 C2' G A 76 OK 1577 1573 1576 1598 C2' G A 77 OK 1600 1596 1599 1621 C2' U A 78 OK 1623 1619 1622 1641 C2' U A 79 OK 1643 1639 1642 1661 C2' C A 80 OK 1663 1659 1662 1681 C2' G A 81 OK 1683 1679 1682 1704 C2' G A 82 OK 1706 1702 1705 1727 C2' U A 83 OK 1729 1725 1728 1747 C2' A A 84 OK 1749 1745 1748 1769 C2' A A 85 OK 1771 1767 1770 1791 C2' C A 86 OK 1793 1789 1792 1811 C2' G A 87 OK 1813 1809 1812 1834 C2' A A 88 OK 1836 1832 1835 1856 C2' A A 89 OK 1858 1854 1857 1878 C2' U A 90 OK 1880 1876 1879 1898 C2' C A 91 OK 1900 1896 1899 1918 C2' G A 92 OK 1920 1916 1919 1941 C2' A A 93 OK 1943 1939 1942 1963 C2' C A 94 OK 1965 1961 1964 1983 C2' A A 95 OK 1985 1981 1984 2005 C2' G A 96 OK 2007 2003 2006 2028 C2' A A 97 OK 2030 2026 2029 2050 C2' A A 98 OK 2052 2048 2051 2072 C2' G A 99 OK 2074 2070 2073 2095 C2' G A 100 OK 2097 2093 2096 2118 C2' U A 101 OK 2120 2116 2119 2138 C2' G A 102 OK 2140 2136 2139 2161 C2' C A 103 OK 2163 2159 2162 2181 C2' A A 104 OK 2183 2179 2182 2203 C2' C A 105 OK 2205 2201 2204 2223 C2' G A 106 OK 2225 2221 2224 2246 C2' G A 107 OK 2248 2244 2247 2269 C2' U A 108 OK 2271 2267 2270 2292 C2' CCC A 109 OK 2294 2290 2293 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 17 C3' GTP A 3 OK 15 18 19 40 C3' G A 4 OK 38 41 42 63 C3' C A 5 OK 61 64 65 83 C3' C A 6 OK 81 84 85 103 C3' G A 7 OK 101 104 105 126 C3' U A 8 OK 124 127 128 146 C3' G A 9 OK 144 147 148 169 C3' C A 10 OK 167 170 171 189 C3' U A 11 OK 187 190 191 209 C3' A A 12 OK 207 210 211 231 C3' A A 13 OK 229 232 233 253 C3' G A 14 OK 251 254 255 276 C3' C A 15 OK 274 277 278 296 C3' G A 16 OK 294 297 298 319 C3' G A 17 OK 317 320 321 342 C3' G A 18 OK 340 343 344 365 C3' G A 19 OK 363 366 367 388 C3' A A 20 OK 386 389 390 410 C3' G A 21 OK 408 411 412 433 C3' G A 22 OK 431 434 435 456 C3' U A 23 OK 454 457 458 476 C3' A A 24 OK 474 477 478 498 C3' G A 25 OK 496 499 500 521 C3' C A 26 OK 519 522 523 541 C3' G A 27 OK 539 542 543 564 C3' G A 28 OK 562 565 566 587 C3' U A 29 OK 585 588 589 607 C3' G A 30 OK 605 608 609 630 C3' C A 31 OK 628 631 632 650 C3' C A 32 OK 648 651 652 670 C3' C A 33 OK 668 671 672 690 C3' U A 34 OK 688 691 692 710 C3' G A 35 OK 708 711 712 733 C3' U A 36 OK 731 734 735 753 C3' A A 37 OK 751 754 755 775 C3' C A 38 OK 773 776 777 795 C3' C A 39 OK 793 796 797 815 C3' U A 40 OK 813 816 817 835 C3' G A 41 OK 833 836 837 858 C3' C A 42 OK 856 859 860 878 C3' A A 43 OK 876 879 880 900 C3' A A 44 OK 898 901 902 922 C3' U A 45 OK 920 923 924 942 C3' C A 46 OK 940 943 944 962 C3' C A 47 OK 960 963 964 982 C3' G A 48 OK 980 983 984 1005 C3' C A 49 OK 1003 1006 1007 1025 C3' U A 50 OK 1023 1026 1027 1045 C3' C A 51 OK 1043 1046 1047 1065 C3' U A 52 OK 1063 1066 1067 1085 C3' A A 53 OK 1083 1086 1087 1107 C3' G A 54 OK 1105 1108 1109 1130 C3' C A 55 OK 1128 1131 1132 1150 C3' A A 56 OK 1148 1151 1152 1172 C3' G A 57 OK 1170 1173 1174 1195 C3' G A 58 OK 1193 1196 1197 1218 C3' G A 59 OK 1216 1219 1220 1241 C3' C A 60 OK 1239 1242 1243 1261 C3' C A 61 OK 1259 1262 1263 1281 C3' G A 62 OK 1279 1282 1283 1304 C3' A A 63 OK 1302 1305 1306 1326 C3' A A 64 OK 1324 1327 1328 1348 C3' U A 65 OK 1346 1349 1350 1368 C3' C A 66 OK 1366 1369 1370 1388 C3' C A 67 OK 1386 1389 1390 1408 C3' C A 68 OK 1406 1409 1410 1428 C3' U A 69 OK 1426 1429 1430 1448 C3' U A 70 OK 1446 1449 1450 1468 C3' C A 71 OK 1466 1469 1470 1488 C3' U A 72 OK 1486 1489 1490 1508 C3' C A 73 OK 1506 1509 1510 1528 C3' G A 74 OK 1526 1529 1530 1551 C3' A A 75 OK 1549 1552 1553 1573 C3' G A 76 OK 1571 1574 1575 1596 C3' G A 77 OK 1594 1597 1598 1619 C3' U A 78 OK 1617 1620 1621 1639 C3' U A 79 OK 1637 1640 1641 1659 C3' C A 80 OK 1657 1660 1661 1679 C3' G A 81 OK 1677 1680 1681 1702 C3' G A 82 OK 1700 1703 1704 1725 C3' U A 83 OK 1723 1726 1727 1745 C3' A A 84 OK 1743 1746 1747 1767 C3' A A 85 OK 1765 1768 1769 1789 C3' C A 86 OK 1787 1790 1791 1809 C3' G A 87 OK 1807 1810 1811 1832 C3' A A 88 OK 1830 1833 1834 1854 C3' A A 89 OK 1852 1855 1856 1876 C3' U A 90 OK 1874 1877 1878 1896 C3' C A 91 OK 1894 1897 1898 1916 C3' G A 92 OK 1914 1917 1918 1939 C3' A A 93 OK 1937 1940 1941 1961 C3' C A 94 OK 1959 1962 1963 1981 C3' A A 95 OK 1979 1982 1983 2003 C3' G A 96 OK 2001 2004 2005 2026 C3' A A 97 OK 2024 2027 2028 2048 C3' A A 98 OK 2046 2049 2050 2070 C3' G A 99 OK 2068 2071 2072 2093 C3' G A 100 OK 2091 2094 2095 2116 C3' U A 101 OK 2114 2117 2118 2136 C3' G A 102 OK 2134 2137 2138 2159 C3' C A 103 OK 2157 2160 2161 2179 C3' A A 104 OK 2177 2180 2181 2201 C3' C A 105 OK 2199 2202 2203 2221 C3' G A 106 OK 2219 2222 2223 2244 C3' G A 107 OK 2242 2245 2246 2267 C3' U A 108 OK 2265 2268 2269 2290 C3' CCC A 109 OK 2288 2291 2292 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 15 C4' GTP A 3 OK 17 14 16 38 C4' G A 4 OK 40 37 39 61 C4' C A 5 OK 63 60 62 81 C4' C A 6 OK 83 80 82 101 C4' G A 7 OK 103 100 102 124 C4' U A 8 OK 126 123 125 144 C4' G A 9 OK 146 143 145 167 C4' C A 10 OK 169 166 168 187 C4' U A 11 OK 189 186 188 207 C4' A A 12 OK 209 206 208 229 C4' A A 13 OK 231 228 230 251 C4' G A 14 OK 253 250 252 274 C4' C A 15 OK 276 273 275 294 C4' G A 16 OK 296 293 295 317 C4' G A 17 OK 319 316 318 340 C4' G A 18 OK 342 339 341 363 C4' G A 19 OK 365 362 364 386 C4' A A 20 OK 388 385 387 408 C4' G A 21 OK 410 407 409 431 C4' G A 22 OK 433 430 432 454 C4' U A 23 OK 456 453 455 474 C4' A A 24 OK 476 473 475 496 C4' G A 25 OK 498 495 497 519 C4' C A 26 OK 521 518 520 539 C4' G A 27 OK 541 538 540 562 C4' G A 28 OK 564 561 563 585 C4' U A 29 OK 587 584 586 605 C4' G A 30 OK 607 604 606 628 C4' C A 31 OK 630 627 629 648 C4' C A 32 OK 650 647 649 668 C4' C A 33 OK 670 667 669 688 C4' U A 34 OK 690 687 689 708 C4' G A 35 OK 710 707 709 731 C4' U A 36 OK 733 730 732 751 C4' A A 37 OK 753 750 752 773 C4' C A 38 OK 775 772 774 793 C4' C A 39 OK 795 792 794 813 C4' U A 40 OK 815 812 814 833 C4' G A 41 OK 835 832 834 856 C4' C A 42 OK 858 855 857 876 C4' A A 43 OK 878 875 877 898 C4' A A 44 OK 900 897 899 920 C4' U A 45 OK 922 919 921 940 C4' C A 46 OK 942 939 941 960 C4' C A 47 OK 962 959 961 980 C4' G A 48 OK 982 979 981 1003 C4' C A 49 OK 1005 1002 1004 1023 C4' U A 50 OK 1025 1022 1024 1043 C4' C A 51 OK 1045 1042 1044 1063 C4' U A 52 OK 1065 1062 1064 1083 C4' A A 53 OK 1085 1082 1084 1105 C4' G A 54 OK 1107 1104 1106 1128 C4' C A 55 OK 1130 1127 1129 1148 C4' A A 56 OK 1150 1147 1149 1170 C4' G A 57 OK 1172 1169 1171 1193 C4' G A 58 OK 1195 1192 1194 1216 C4' G A 59 OK 1218 1215 1217 1239 C4' C A 60 OK 1241 1238 1240 1259 C4' C A 61 OK 1261 1258 1260 1279 C4' G A 62 OK 1281 1278 1280 1302 C4' A A 63 OK 1304 1301 1303 1324 C4' A A 64 OK 1326 1323 1325 1346 C4' U A 65 OK 1348 1345 1347 1366 C4' C A 66 OK 1368 1365 1367 1386 C4' C A 67 OK 1388 1385 1387 1406 C4' C A 68 OK 1408 1405 1407 1426 C4' U A 69 OK 1428 1425 1427 1446 C4' U A 70 OK 1448 1445 1447 1466 C4' C A 71 OK 1468 1465 1467 1486 C4' U A 72 OK 1488 1485 1487 1506 C4' C A 73 OK 1508 1505 1507 1526 C4' G A 74 OK 1528 1525 1527 1549 C4' A A 75 OK 1551 1548 1550 1571 C4' G A 76 OK 1573 1570 1572 1594 C4' G A 77 OK 1596 1593 1595 1617 C4' U A 78 OK 1619 1616 1618 1637 C4' U A 79 OK 1639 1636 1638 1657 C4' C A 80 OK 1659 1656 1658 1677 C4' G A 81 OK 1679 1676 1678 1700 C4' G A 82 OK 1702 1699 1701 1723 C4' U A 83 OK 1725 1722 1724 1743 C4' A A 84 OK 1745 1742 1744 1765 C4' A A 85 OK 1767 1764 1766 1787 C4' C A 86 OK 1789 1786 1788 1807 C4' G A 87 OK 1809 1806 1808 1830 C4' A A 88 OK 1832 1829 1831 1852 C4' A A 89 OK 1854 1851 1853 1874 C4' U A 90 OK 1876 1873 1875 1894 C4' C A 91 OK 1896 1893 1895 1914 C4' G A 92 OK 1916 1913 1915 1937 C4' A A 93 OK 1939 1936 1938 1959 C4' C A 94 OK 1961 1958 1960 1979 C4' A A 95 OK 1981 1978 1980 2001 C4' G A 96 OK 2003 2000 2002 2024 C4' A A 97 OK 2026 2023 2025 2046 C4' A A 98 OK 2048 2045 2047 2068 C4' G A 99 OK 2070 2067 2069 2091 C4' G A 100 OK 2093 2090 2092 2114 C4' U A 101 OK 2116 2113 2115 2134 C4' G A 102 OK 2136 2133 2135 2157 C4' C A 103 OK 2159 2156 2158 2177 C4' A A 104 OK 2179 2176 2178 2199 C4' C A 105 OK 2201 2198 2200 2219 C4' G A 106 OK 2221 2218 2220 2242 C4' G A 107 OK 2244 2241 2243 2265 C4' U A 108 OK 2267 2264 2266 2288 C4' CCC A 109 OK 2290 2287 2289 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 14 C5' GTP A 3 13 15 37 C5' G A 4 36 38 60 C5' C A 5 59 61 80 C5' C A 6 79 81 100 C5' G A 7 99 101 123 C5' U A 8 122 124 143 C5' G A 9 142 144 166 C5' C A 10 165 167 186 C5' U A 11 185 187 206 C5' A A 12 205 207 228 C5' A A 13 227 229 250 C5' G A 14 249 251 273 C5' C A 15 272 274 293 C5' G A 16 292 294 316 C5' G A 17 315 317 339 C5' G A 18 338 340 362 C5' G A 19 361 363 385 C5' A A 20 384 386 407 C5' G A 21 406 408 430 C5' G A 22 429 431 453 C5' U A 23 452 454 473 C5' A A 24 472 474 495 C5' G A 25 494 496 518 C5' C A 26 517 519 538 C5' G A 27 537 539 561 C5' G A 28 560 562 584 C5' U A 29 583 585 604 C5' G A 30 603 605 627 C5' C A 31 626 628 647 C5' C A 32 646 648 667 C5' C A 33 666 668 687 C5' U A 34 686 688 707 C5' G A 35 706 708 730 C5' U A 36 729 731 750 C5' A A 37 749 751 772 C5' C A 38 771 773 792 C5' C A 39 791 793 812 C5' U A 40 811 813 832 C5' G A 41 831 833 855 C5' C A 42 854 856 875 C5' A A 43 874 876 897 C5' A A 44 896 898 919 C5' U A 45 918 920 939 C5' C A 46 938 940 959 C5' C A 47 958 960 979 C5' G A 48 978 980 1002 C5' C A 49 1001 1003 1022 C5' U A 50 1021 1023 1042 C5' C A 51 1041 1043 1062 C5' U A 52 1061 1063 1082 C5' A A 53 1081 1083 1104 C5' G A 54 1103 1105 1127 C5' C A 55 1126 1128 1147 C5' A A 56 1146 1148 1169 C5' G A 57 1168 1170 1192 C5' G A 58 1191 1193 1215 C5' G A 59 1214 1216 1238 C5' C A 60 1237 1239 1258 C5' C A 61 1257 1259 1278 C5' G A 62 1277 1279 1301 C5' A A 63 1300 1302 1323 C5' A A 64 1322 1324 1345 C5' U A 65 1344 1346 1365 C5' C A 66 1364 1366 1385 C5' C A 67 1384 1386 1405 C5' C A 68 1404 1406 1425 C5' U A 69 1424 1426 1445 C5' U A 70 1444 1446 1465 C5' C A 71 1464 1466 1485 C5' U A 72 1484 1486 1505 C5' C A 73 1504 1506 1525 C5' G A 74 1524 1526 1548 C5' A A 75 1547 1549 1570 C5' G A 76 1569 1571 1593 C5' G A 77 1592 1594 1616 C5' U A 78 1615 1617 1636 C5' U A 79 1635 1637 1656 C5' C A 80 1655 1657 1676 C5' G A 81 1675 1677 1699 C5' G A 82 1698 1700 1722 C5' U A 83 1721 1723 1742 C5' A A 84 1741 1743 1764 C5' A A 85 1763 1765 1786 C5' C A 86 1785 1787 1806 C5' G A 87 1805 1807 1829 C5' A A 88 1828 1830 1851 C5' A A 89 1850 1852 1873 C5' U A 90 1872 1874 1893 C5' C A 91 1892 1894 1913 C5' G A 92 1912 1914 1936 C5' A A 93 1935 1937 1958 C5' C A 94 1957 1959 1978 C5' A A 95 1977 1979 2000 C5' G A 96 1999 2001 2023 C5' A A 97 2022 2024 2045 C5' A A 98 2044 2046 2067 C5' G A 99 2066 2068 2090 C5' G A 100 2089 2091 2113 C5' U A 101 2112 2114 2133 C5' G A 102 2132 2134 2156 C5' C A 103 2155 2157 2176 C5' A A 104 2175 2177 2198 C5' C A 105 2197 2199 2218 C5' G A 106 2217 2219 2241 C5' G A 107 2240 2242 2264 C5' U A 108 2263 2265 2287 C5' CCC A 109 2286 2288 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 33 P G A 4 distorted distorted 18 34 35 36 56 P C A 5 distorted distorted 41 57 58 59 76 P C A 6 distorted distorted 64 77 78 79 96 P G A 7 distorted distorted 84 97 98 99 119 P U A 8 distorted distorted 104 120 121 122 139 P G A 9 distorted distorted 127 140 141 142 162 P C A 10 distorted distorted 147 163 164 165 182 P U A 11 distorted distorted 170 183 184 185 202 P A A 12 distorted distorted 190 203 204 205 224 P A A 13 distorted distorted 210 225 226 227 246 P G A 14 distorted distorted 232 247 248 249 269 P C A 15 distorted distorted 254 270 271 272 289 P G A 16 distorted distorted 277 290 291 292 312 P G A 17 distorted distorted 297 313 314 315 335 P G A 18 distorted distorted 320 336 337 338 358 P G A 19 distorted distorted 343 359 360 361 381 P A A 20 distorted distorted 366 382 383 384 403 P G A 21 distorted distorted 389 404 405 406 426 P G A 22 distorted distorted 411 427 428 429 449 P U A 23 distorted distorted 434 450 451 452 469 P A A 24 distorted distorted 457 470 471 472 491 P G A 25 distorted distorted 477 492 493 494 514 P C A 26 distorted distorted 499 515 516 517 534 P G A 27 distorted distorted 522 535 536 537 557 P G A 28 distorted distorted 542 558 559 560 580 P U A 29 distorted distorted 565 581 582 583 600 P G A 30 distorted distorted 588 601 602 603 623 P C A 31 distorted distorted 608 624 625 626 643 P C A 32 distorted distorted 631 644 645 646 663 P C A 33 distorted distorted 651 664 665 666 683 P U A 34 distorted distorted 671 684 685 686 703 P G A 35 distorted distorted 691 704 705 706 726 P U A 36 distorted distorted 711 727 728 729 746 P A A 37 distorted distorted 734 747 748 749 768 P C A 38 distorted distorted 754 769 770 771 788 P C A 39 distorted distorted 776 789 790 791 808 P U A 40 distorted distorted 796 809 810 811 828 P G A 41 distorted distorted 816 829 830 831 851 P C A 42 distorted distorted 836 852 853 854 871 P A A 43 distorted distorted 859 872 873 874 893 P A A 44 distorted distorted 879 894 895 896 915 P U A 45 distorted distorted 901 916 917 918 935 P C A 46 distorted distorted 923 936 937 938 955 P C A 47 distorted distorted 943 956 957 958 975 P G A 48 distorted distorted 963 976 977 978 998 P C A 49 distorted distorted 983 999 1000 1001 1018 P U A 50 distorted distorted 1006 1019 1020 1021 1038 P C A 51 distorted distorted 1026 1039 1040 1041 1058 P U A 52 distorted distorted 1046 1059 1060 1061 1078 P A A 53 distorted distorted 1066 1079 1080 1081 1100 P G A 54 distorted distorted 1086 1101 1102 1103 1123 P C A 55 distorted distorted 1108 1124 1125 1126 1143 P A A 56 distorted distorted 1131 1144 1145 1146 1165 P G A 57 distorted distorted 1151 1166 1167 1168 1188 P G A 58 distorted distorted 1173 1189 1190 1191 1211 P G A 59 distorted distorted 1196 1212 1213 1214 1234 P C A 60 distorted distorted 1219 1235 1236 1237 1254 P C A 61 distorted distorted 1242 1255 1256 1257 1274 P G A 62 distorted distorted 1262 1275 1276 1277 1297 P A A 63 distorted distorted 1282 1298 1299 1300 1319 P A A 64 distorted distorted 1305 1320 1321 1322 1341 P U A 65 distorted distorted 1327 1342 1343 1344 1361 P C A 66 distorted distorted 1349 1362 1363 1364 1381 P C A 67 distorted distorted 1369 1382 1383 1384 1401 P C A 68 distorted distorted 1389 1402 1403 1404 1421 P U A 69 distorted distorted 1409 1422 1423 1424 1441 P U A 70 distorted distorted 1429 1442 1443 1444 1461 P C A 71 distorted distorted 1449 1462 1463 1464 1481 P U A 72 distorted distorted 1469 1482 1483 1484 1501 P C A 73 distorted distorted 1489 1502 1503 1504 1521 P G A 74 distorted distorted 1509 1522 1523 1524 1544 P A A 75 distorted distorted 1529 1545 1546 1547 1566 P G A 76 distorted distorted 1552 1567 1568 1569 1589 P G A 77 distorted distorted 1574 1590 1591 1592 1612 P U A 78 distorted distorted 1597 1613 1614 1615 1632 P U A 79 distorted distorted 1620 1633 1634 1635 1652 P C A 80 distorted distorted 1640 1653 1654 1655 1672 P G A 81 distorted distorted 1660 1673 1674 1675 1695 P G A 82 distorted distorted 1680 1696 1697 1698 1718 P U A 83 distorted distorted 1703 1719 1720 1721 1738 P A A 84 distorted distorted 1726 1739 1740 1741 1760 P A A 85 distorted distorted 1746 1761 1762 1763 1782 P C A 86 distorted distorted 1768 1783 1784 1785 1802 P G A 87 distorted distorted 1790 1803 1804 1805 1825 P A A 88 distorted distorted 1810 1826 1827 1828 1847 P A A 89 distorted distorted 1833 1848 1849 1850 1869 P U A 90 distorted distorted 1855 1870 1871 1872 1889 P C A 91 distorted distorted 1877 1890 1891 1892 1909 P G A 92 distorted distorted 1897 1910 1911 1912 1932 P A A 93 distorted distorted 1917 1933 1934 1935 1954 P C A 94 distorted distorted 1940 1955 1956 1957 1974 P A A 95 distorted distorted 1962 1975 1976 1977 1996 P G A 96 distorted distorted 1982 1997 1998 1999 2019 P A A 97 distorted distorted 2004 2020 2021 2022 2041 P A A 98 distorted distorted 2027 2042 2043 2044 2063 P G A 99 distorted distorted 2049 2064 2065 2066 2086 P G A 100 distorted distorted 2071 2087 2088 2089 2109 P U A 101 distorted distorted 2094 2110 2111 2112 2129 P G A 102 distorted distorted 2117 2130 2131 2132 2152 P C A 103 distorted distorted 2137 2153 2154 2155 2172 P A A 104 distorted distorted 2160 2173 2174 2175 2194 P C A 105 distorted distorted 2180 2195 2196 2197 2214 P G A 106 distorted distorted 2202 2215 2216 2217 2237 P G A 107 distorted distorted 2222 2238 2239 2240 2260 P U A 108 distorted distorted 2245 2261 2262 2263 2283 P CCC A 109 distorted distorted 2268 2284 2285 2286 ---------------------------------------------------------------------------------