ID code: '4W90' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 649 C1' G C 1 beta 644 650 647 672 C1' C C 2 beta 667 673 670 692 C1' G C 3 beta 687 693 690 715 C1' C C 4 beta 710 716 713 735 C1' G C 5 beta 730 736 733 758 C1' C C 6 beta 753 759 756 778 C1' U C 7 beta 773 779 776 798 C1' U C 8 beta 793 799 796 818 C1' A C 9 beta 813 819 816 840 C1' A C 10 beta 835 841 838 862 C1' U C 11 beta 857 863 860 882 C1' C C 12 beta 877 883 880 902 C1' U C 13 beta 897 903 900 922 C1' G C 14 beta 917 923 920 945 C1' A C 15 beta 940 946 943 958 C1' A C 16 beta 953 959 956 980 C1' A C 17 beta 975 981 978 1002 C1' U C 18 beta 997 1003 1000 1022 C1' C C 19 beta 1017 1023 1020 1042 C1' A C 20 beta 1037 1043 1040 1064 C1' G C 21 beta 1059 1065 1062 1087 C1' A C 22 beta 1082 1088 1085 1109 C1' G C 23 beta 1104 1110 1107 1132 C1' C C 24 beta 1127 1133 1130 1152 C1' G C 25 beta 1147 1153 1150 1175 C1' G C 26 beta 1170 1176 1173 1198 C1' G C 27 beta 1193 1199 1196 1221 C1' G C 28 beta 1216 1222 1219 1244 C1' G C 29 beta 1239 1245 1242 1267 C1' A C 30 beta 1262 1268 1265 1289 C1' C C 31 beta 1284 1290 1287 1309 C1' C C 32 beta 1304 1310 1307 1329 C1' C C 33 beta 1324 1330 1327 1349 C1' A C 34 beta 1344 1350 1347 1371 C1' U C 35 beta 1366 1372 1369 1391 C1' U C 36 beta 1386 1392 1389 1411 C1' G C 37 beta 1406 1412 1409 1434 C1' C C 38 beta 1429 1435 1432 1454 C1' A C 39 beta 1449 1455 1452 1476 C1' C C 40 beta 1471 1477 1474 1494 C1' A C 57 beta 1489 1495 1492 1516 C1' G C 58 beta 1511 1517 1514 1539 C1' G C 59 beta 1534 1540 1537 1562 C1' G C 60 beta 1557 1563 1560 1585 C1' G C 61 beta 1580 1586 1583 1608 C1' U C 62 beta 1603 1609 1606 1628 C1' G C 63 beta 1623 1629 1626 1651 C1' A C 64 beta 1646 1652 1649 1673 C1' A C 65 beta 1668 1674 1671 1695 C1' U C 66 beta 1690 1696 1693 1715 C1' C C 67 beta 1710 1716 1713 1735 C1' C C 68 beta 1730 1736 1733 1755 C1' U C 69 beta 1750 1756 1753 1775 C1' U C 70 beta 1770 1776 1773 1792 C1' U C 73 beta 1787 1793 1790 1812 C1' A C 74 beta 1807 1813 1810 1834 C1' G C 75 beta 1829 1835 1832 1857 C1' G C 76 beta 1852 1858 1855 1880 C1' U C 77 beta 1875 1881 1878 1900 C1' A C 78 beta 1895 1901 1898 1922 C1' G C 79 beta 1917 1923 1920 1945 C1' G C 80 beta 1940 1946 1943 1968 C1' G C 81 beta 1963 1969 1966 1991 C1' C C 82 beta 1986 1992 1989 2011 C1' G C 83 beta 2006 2012 2009 2034 C1' A C 84 beta 2029 2035 2032 2056 C1' A C 85 beta 2051 2057 2054 2078 C1' A C 86 beta 2073 2079 2076 2100 C1' G C 87 beta 2095 2101 2098 2123 C1' C C 88 beta 2118 2124 2121 2143 C1' C C 89 beta 2138 2144 2141 2163 C1' C C 90 beta 2158 2164 2161 2183 C1' G C 91 beta 2178 2184 2181 2206 C1' A C 92 beta 2201 2207 2204 2228 C1' A C 93 beta 2223 2229 2226 2250 C1' U C 94 beta 2245 2251 2248 2270 C1' C C 95 beta 2265 2271 2268 2290 C1' C C 96 beta 2285 2291 2288 2310 C1' G C 97 beta 2305 2311 2308 2333 C1' U C 98 beta 2328 2334 2331 2353 C1' C C 99 beta 2348 2354 2351 2373 C1' A C 100 beta 2368 2374 2371 2395 C1' G C 101 beta 2390 2396 2393 2418 C1' C C 102 beta 2413 2419 2416 2438 C1' U C 103 beta 2433 2439 2436 2458 C1' A C 104 beta 2453 2459 2456 2480 C1' A C 105 beta 2475 2481 2478 2502 C1' C C 106 beta 2497 2503 2500 2522 C1' C C 107 beta 2517 2523 2520 2542 C1' U C 108 beta 2537 2543 2540 2562 C1' C C 109 beta 2557 2563 2560 2582 C1' G C 110 beta 2577 2583 2580 2605 C1' U C 111 beta 2600 2606 2603 2625 C1' A C 112 beta 2620 2626 2623 2647 C1' A C 113 beta 2642 2648 2645 2669 C1' G C 114 beta 2664 2670 2667 2692 C1' C C 115 beta 2687 2693 2690 2712 C1' G C 116 beta 2707 2713 2710 2735 C1' C C 117 beta 2730 2736 2733 2755 C1' G C 118 beta 2750 2756 2753 2778 C1' C C 119 beta 2773 2779 2776 2799 C1' 2BA C 201 beta 2794 2800 2797 2843 C1' 2BA C 202 beta 2838 2844 2841 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 647 C2' G C 1 OK 649 645 648 670 C2' C C 2 OK 672 668 671 690 C2' G C 3 OK 692 688 691 713 C2' C C 4 OK 715 711 714 733 C2' G C 5 OK 735 731 734 756 C2' C C 6 OK 758 754 757 776 C2' U C 7 OK 778 774 777 796 C2' U C 8 OK 798 794 797 816 C2' A C 9 OK 818 814 817 838 C2' A C 10 OK 840 836 839 860 C2' U C 11 OK 862 858 861 880 C2' C C 12 OK 882 878 881 900 C2' U C 13 OK 902 898 901 920 C2' G C 14 OK 922 918 921 943 C2' A C 15 OK 945 941 944 956 C2' A C 16 OK 958 954 957 978 C2' A C 17 OK 980 976 979 1000 C2' U C 18 OK 1002 998 1001 1020 C2' C C 19 OK 1022 1018 1021 1040 C2' A C 20 OK 1042 1038 1041 1062 C2' G C 21 OK 1064 1060 1063 1085 C2' A C 22 OK 1087 1083 1086 1107 C2' G C 23 OK 1109 1105 1108 1130 C2' C C 24 OK 1132 1128 1131 1150 C2' G C 25 OK 1152 1148 1151 1173 C2' G C 26 OK 1175 1171 1174 1196 C2' G C 27 OK 1198 1194 1197 1219 C2' G C 28 OK 1221 1217 1220 1242 C2' G C 29 OK 1244 1240 1243 1265 C2' A C 30 OK 1267 1263 1266 1287 C2' C C 31 OK 1289 1285 1288 1307 C2' C C 32 OK 1309 1305 1308 1327 C2' C C 33 OK 1329 1325 1328 1347 C2' A C 34 OK 1349 1345 1348 1369 C2' U C 35 OK 1371 1367 1370 1389 C2' U C 36 OK 1391 1387 1390 1409 C2' G C 37 OK 1411 1407 1410 1432 C2' C C 38 OK 1434 1430 1433 1452 C2' A C 39 OK 1454 1450 1453 1474 C2' C C 40 OK 1476 1472 1475 1492 C2' A C 57 OK 1494 1490 1493 1514 C2' G C 58 OK 1516 1512 1515 1537 C2' G C 59 OK 1539 1535 1538 1560 C2' G C 60 OK 1562 1558 1561 1583 C2' G C 61 OK 1585 1581 1584 1606 C2' U C 62 OK 1608 1604 1607 1626 C2' G C 63 OK 1628 1624 1627 1649 C2' A C 64 OK 1651 1647 1650 1671 C2' A C 65 OK 1673 1669 1672 1693 C2' U C 66 OK 1695 1691 1694 1713 C2' C C 67 OK 1715 1711 1714 1733 C2' C C 68 OK 1735 1731 1734 1753 C2' U C 69 OK 1755 1751 1754 1773 C2' U C 70 OK 1775 1771 1774 1790 C2' U C 73 OK 1792 1788 1791 1810 C2' A C 74 OK 1812 1808 1811 1832 C2' G C 75 OK 1834 1830 1833 1855 C2' G C 76 OK 1857 1853 1856 1878 C2' U C 77 OK 1880 1876 1879 1898 C2' A C 78 OK 1900 1896 1899 1920 C2' G C 79 OK 1922 1918 1921 1943 C2' G C 80 OK 1945 1941 1944 1966 C2' G C 81 OK 1968 1964 1967 1989 C2' C C 82 OK 1991 1987 1990 2009 C2' G C 83 OK 2011 2007 2010 2032 C2' A C 84 OK 2034 2030 2033 2054 C2' A C 85 OK 2056 2052 2055 2076 C2' A C 86 OK 2078 2074 2077 2098 C2' G C 87 OK 2100 2096 2099 2121 C2' C C 88 OK 2123 2119 2122 2141 C2' C C 89 OK 2143 2139 2142 2161 C2' C C 90 OK 2163 2159 2162 2181 C2' G C 91 OK 2183 2179 2182 2204 C2' A C 92 OK 2206 2202 2205 2226 C2' A C 93 OK 2228 2224 2227 2248 C2' U C 94 OK 2250 2246 2249 2268 C2' C C 95 OK 2270 2266 2269 2288 C2' C C 96 OK 2290 2286 2289 2308 C2' G C 97 OK 2310 2306 2309 2331 C2' U C 98 OK 2333 2329 2332 2351 C2' C C 99 OK 2353 2349 2352 2371 C2' A C 100 OK 2373 2369 2372 2393 C2' G C 101 OK 2395 2391 2394 2416 C2' C C 102 OK 2418 2414 2417 2436 C2' U C 103 OK 2438 2434 2437 2456 C2' A C 104 OK 2458 2454 2457 2478 C2' A C 105 OK 2480 2476 2479 2500 C2' C C 106 OK 2502 2498 2501 2520 C2' C C 107 OK 2522 2518 2521 2540 C2' U C 108 OK 2542 2538 2541 2560 C2' C C 109 OK 2562 2558 2561 2580 C2' G C 110 OK 2582 2578 2581 2603 C2' U C 111 OK 2605 2601 2604 2623 C2' A C 112 OK 2625 2621 2624 2645 C2' A C 113 OK 2647 2643 2646 2667 C2' G C 114 OK 2669 2665 2668 2690 C2' C C 115 OK 2692 2688 2691 2710 C2' G C 116 OK 2712 2708 2711 2733 C2' C C 117 OK 2735 2731 2734 2753 C2' G C 118 OK 2755 2751 2754 2776 C2' C C 119 OK 2778 2774 2777 2797 C2' 2BA C 201 OK 2799 2795 2798 2841 C2' 2BA C 202 OK 2843 2839 2842 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 645 C3' G C 1 OK 643 646 647 668 C3' C C 2 OK 666 669 670 688 C3' G C 3 OK 686 689 690 711 C3' C C 4 OK 709 712 713 731 C3' G C 5 OK 729 732 733 754 C3' C C 6 OK 752 755 756 774 C3' U C 7 OK 772 775 776 794 C3' U C 8 OK 792 795 796 814 C3' A C 9 OK 812 815 816 836 C3' A C 10 OK 834 837 838 858 C3' U C 11 OK 856 859 860 878 C3' C C 12 OK 876 879 880 898 C3' U C 13 OK 896 899 900 918 C3' G C 14 OK 916 919 920 941 C3' A C 15 OK 939 942 943 954 C3' A C 16 OK 952 955 956 976 C3' A C 17 OK 974 977 978 998 C3' U C 18 OK 996 999 1000 1018 C3' C C 19 OK 1016 1019 1020 1038 C3' A C 20 OK 1036 1039 1040 1060 C3' G C 21 OK 1058 1061 1062 1083 C3' A C 22 OK 1081 1084 1085 1105 C3' G C 23 OK 1103 1106 1107 1128 C3' C C 24 OK 1126 1129 1130 1148 C3' G C 25 OK 1146 1149 1150 1171 C3' G C 26 OK 1169 1172 1173 1194 C3' G C 27 OK 1192 1195 1196 1217 C3' G C 28 OK 1215 1218 1219 1240 C3' G C 29 OK 1238 1241 1242 1263 C3' A C 30 OK 1261 1264 1265 1285 C3' C C 31 OK 1283 1286 1287 1305 C3' C C 32 OK 1303 1306 1307 1325 C3' C C 33 OK 1323 1326 1327 1345 C3' A C 34 OK 1343 1346 1347 1367 C3' U C 35 OK 1365 1368 1369 1387 C3' U C 36 OK 1385 1388 1389 1407 C3' G C 37 OK 1405 1408 1409 1430 C3' C C 38 OK 1428 1431 1432 1450 C3' A C 39 OK 1448 1451 1452 1472 C3' C C 40 OK 1470 1473 1474 1490 C3' A C 57 OK 1488 1491 1492 1512 C3' G C 58 OK 1510 1513 1514 1535 C3' G C 59 OK 1533 1536 1537 1558 C3' G C 60 OK 1556 1559 1560 1581 C3' G C 61 OK 1579 1582 1583 1604 C3' U C 62 OK 1602 1605 1606 1624 C3' G C 63 OK 1622 1625 1626 1647 C3' A C 64 OK 1645 1648 1649 1669 C3' A C 65 OK 1667 1670 1671 1691 C3' U C 66 OK 1689 1692 1693 1711 C3' C C 67 OK 1709 1712 1713 1731 C3' C C 68 OK 1729 1732 1733 1751 C3' U C 69 OK 1749 1752 1753 1771 C3' U C 70 OK 1769 1772 1773 1788 C3' U C 73 OK 1786 1789 1790 1808 C3' A C 74 OK 1806 1809 1810 1830 C3' G C 75 OK 1828 1831 1832 1853 C3' G C 76 OK 1851 1854 1855 1876 C3' U C 77 OK 1874 1877 1878 1896 C3' A C 78 OK 1894 1897 1898 1918 C3' G C 79 OK 1916 1919 1920 1941 C3' G C 80 OK 1939 1942 1943 1964 C3' G C 81 OK 1962 1965 1966 1987 C3' C C 82 OK 1985 1988 1989 2007 C3' G C 83 OK 2005 2008 2009 2030 C3' A C 84 OK 2028 2031 2032 2052 C3' A C 85 OK 2050 2053 2054 2074 C3' A C 86 OK 2072 2075 2076 2096 C3' G C 87 OK 2094 2097 2098 2119 C3' C C 88 OK 2117 2120 2121 2139 C3' C C 89 OK 2137 2140 2141 2159 C3' C C 90 OK 2157 2160 2161 2179 C3' G C 91 OK 2177 2180 2181 2202 C3' A C 92 OK 2200 2203 2204 2224 C3' A C 93 OK 2222 2225 2226 2246 C3' U C 94 OK 2244 2247 2248 2266 C3' C C 95 OK 2264 2267 2268 2286 C3' C C 96 OK 2284 2287 2288 2306 C3' G C 97 OK 2304 2307 2308 2329 C3' U C 98 OK 2327 2330 2331 2349 C3' C C 99 OK 2347 2350 2351 2369 C3' A C 100 OK 2367 2370 2371 2391 C3' G C 101 OK 2389 2392 2393 2414 C3' C C 102 OK 2412 2415 2416 2434 C3' U C 103 OK 2432 2435 2436 2454 C3' A C 104 OK 2452 2455 2456 2476 C3' A C 105 OK 2474 2477 2478 2498 C3' C C 106 OK 2496 2499 2500 2518 C3' C C 107 OK 2516 2519 2520 2538 C3' U C 108 OK 2536 2539 2540 2558 C3' C C 109 OK 2556 2559 2560 2578 C3' G C 110 OK 2576 2579 2580 2601 C3' U C 111 OK 2599 2602 2603 2621 C3' A C 112 OK 2619 2622 2623 2643 C3' A C 113 OK 2641 2644 2645 2665 C3' G C 114 OK 2663 2666 2667 2688 C3' C C 115 OK 2686 2689 2690 2708 C3' G C 116 OK 2706 2709 2710 2731 C3' C C 117 OK 2729 2732 2733 2751 C3' G C 118 OK 2749 2752 2753 2774 C3' C C 119 OK 2772 2775 2776 2795 C3' 2BA C 201 OK 2793 2796 2797 2839 C3' 2BA C 202 OK 2837 2840 2841 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 643 C4' G C 1 OK 645 642 644 666 C4' C C 2 OK 668 665 667 686 C4' G C 3 OK 688 685 687 709 C4' C C 4 OK 711 708 710 729 C4' G C 5 OK 731 728 730 752 C4' C C 6 OK 754 751 753 772 C4' U C 7 OK 774 771 773 792 C4' U C 8 OK 794 791 793 812 C4' A C 9 OK 814 811 813 834 C4' A C 10 OK 836 833 835 856 C4' U C 11 OK 858 855 857 876 C4' C C 12 OK 878 875 877 896 C4' U C 13 OK 898 895 897 916 C4' G C 14 OK 918 915 917 939 C4' A C 15 OK 941 938 940 952 C4' A C 16 OK 954 951 953 974 C4' A C 17 OK 976 973 975 996 C4' U C 18 OK 998 995 997 1016 C4' C C 19 OK 1018 1015 1017 1036 C4' A C 20 OK 1038 1035 1037 1058 C4' G C 21 OK 1060 1057 1059 1081 C4' A C 22 OK 1083 1080 1082 1103 C4' G C 23 OK 1105 1102 1104 1126 C4' C C 24 OK 1128 1125 1127 1146 C4' G C 25 OK 1148 1145 1147 1169 C4' G C 26 OK 1171 1168 1170 1192 C4' G C 27 OK 1194 1191 1193 1215 C4' G C 28 OK 1217 1214 1216 1238 C4' G C 29 OK 1240 1237 1239 1261 C4' A C 30 OK 1263 1260 1262 1283 C4' C C 31 OK 1285 1282 1284 1303 C4' C C 32 OK 1305 1302 1304 1323 C4' C C 33 OK 1325 1322 1324 1343 C4' A C 34 OK 1345 1342 1344 1365 C4' U C 35 OK 1367 1364 1366 1385 C4' U C 36 OK 1387 1384 1386 1405 C4' G C 37 OK 1407 1404 1406 1428 C4' C C 38 OK 1430 1427 1429 1448 C4' A C 39 OK 1450 1447 1449 1470 C4' C C 40 OK 1472 1469 1471 1488 C4' A C 57 OK 1490 1487 1489 1510 C4' G C 58 OK 1512 1509 1511 1533 C4' G C 59 OK 1535 1532 1534 1556 C4' G C 60 OK 1558 1555 1557 1579 C4' G C 61 OK 1581 1578 1580 1602 C4' U C 62 OK 1604 1601 1603 1622 C4' G C 63 OK 1624 1621 1623 1645 C4' A C 64 OK 1647 1644 1646 1667 C4' A C 65 OK 1669 1666 1668 1689 C4' U C 66 OK 1691 1688 1690 1709 C4' C C 67 OK 1711 1708 1710 1729 C4' C C 68 OK 1731 1728 1730 1749 C4' U C 69 OK 1751 1748 1750 1769 C4' U C 70 OK 1771 1768 1770 1786 C4' U C 73 OK 1788 1785 1787 1806 C4' A C 74 OK 1808 1805 1807 1828 C4' G C 75 OK 1830 1827 1829 1851 C4' G C 76 OK 1853 1850 1852 1874 C4' U C 77 OK 1876 1873 1875 1894 C4' A C 78 OK 1896 1893 1895 1916 C4' G C 79 OK 1918 1915 1917 1939 C4' G C 80 OK 1941 1938 1940 1962 C4' G C 81 OK 1964 1961 1963 1985 C4' C C 82 OK 1987 1984 1986 2005 C4' G C 83 OK 2007 2004 2006 2028 C4' A C 84 OK 2030 2027 2029 2050 C4' A C 85 OK 2052 2049 2051 2072 C4' A C 86 OK 2074 2071 2073 2094 C4' G C 87 OK 2096 2093 2095 2117 C4' C C 88 OK 2119 2116 2118 2137 C4' C C 89 OK 2139 2136 2138 2157 C4' C C 90 OK 2159 2156 2158 2177 C4' G C 91 OK 2179 2176 2178 2200 C4' A C 92 OK 2202 2199 2201 2222 C4' A C 93 OK 2224 2221 2223 2244 C4' U C 94 OK 2246 2243 2245 2264 C4' C C 95 OK 2266 2263 2265 2284 C4' C C 96 OK 2286 2283 2285 2304 C4' G C 97 OK 2306 2303 2305 2327 C4' U C 98 OK 2329 2326 2328 2347 C4' C C 99 OK 2349 2346 2348 2367 C4' A C 100 OK 2369 2366 2368 2389 C4' G C 101 OK 2391 2388 2390 2412 C4' C C 102 OK 2414 2411 2413 2432 C4' U C 103 OK 2434 2431 2433 2452 C4' A C 104 OK 2454 2451 2453 2474 C4' A C 105 OK 2476 2473 2475 2496 C4' C C 106 OK 2498 2495 2497 2516 C4' C C 107 OK 2518 2515 2517 2536 C4' U C 108 OK 2538 2535 2537 2556 C4' C C 109 OK 2558 2555 2557 2576 C4' G C 110 OK 2578 2575 2577 2599 C4' U C 111 OK 2601 2598 2600 2619 C4' A C 112 OK 2621 2618 2620 2641 C4' A C 113 OK 2643 2640 2642 2663 C4' G C 114 OK 2665 2662 2664 2686 C4' C C 115 OK 2688 2685 2687 2706 C4' G C 116 OK 2708 2705 2707 2729 C4' C C 117 OK 2731 2728 2730 2749 C4' G C 118 OK 2751 2748 2750 2772 C4' C C 119 OK 2774 2771 2773 2793 C4' 2BA C 201 OK 2795 2792 2794 2837 C4' 2BA C 202 OK 2839 2836 2838 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 642 C5' G C 1 641 643 665 C5' C C 2 664 666 685 C5' G C 3 684 686 708 C5' C C 4 707 709 728 C5' G C 5 727 729 751 C5' C C 6 750 752 771 C5' U C 7 770 772 791 C5' U C 8 790 792 811 C5' A C 9 810 812 833 C5' A C 10 832 834 855 C5' U C 11 854 856 875 C5' C C 12 874 876 895 C5' U C 13 894 896 915 C5' G C 14 914 916 938 C5' A C 15 937 939 951 C5' A C 16 950 952 973 C5' A C 17 972 974 995 C5' U C 18 994 996 1015 C5' C C 19 1014 1016 1035 C5' A C 20 1034 1036 1057 C5' G C 21 1056 1058 1080 C5' A C 22 1079 1081 1102 C5' G C 23 1101 1103 1125 C5' C C 24 1124 1126 1145 C5' G C 25 1144 1146 1168 C5' G C 26 1167 1169 1191 C5' G C 27 1190 1192 1214 C5' G C 28 1213 1215 1237 C5' G C 29 1236 1238 1260 C5' A C 30 1259 1261 1282 C5' C C 31 1281 1283 1302 C5' C C 32 1301 1303 1322 C5' C C 33 1321 1323 1342 C5' A C 34 1341 1343 1364 C5' U C 35 1363 1365 1384 C5' U C 36 1383 1385 1404 C5' G C 37 1403 1405 1427 C5' C C 38 1426 1428 1447 C5' A C 39 1446 1448 1469 C5' C C 40 1468 1470 1487 C5' A C 57 1486 1488 1509 C5' G C 58 1508 1510 1532 C5' G C 59 1531 1533 1555 C5' G C 60 1554 1556 1578 C5' G C 61 1577 1579 1601 C5' U C 62 1600 1602 1621 C5' G C 63 1620 1622 1644 C5' A C 64 1643 1645 1666 C5' A C 65 1665 1667 1688 C5' U C 66 1687 1689 1708 C5' C C 67 1707 1709 1728 C5' C C 68 1727 1729 1748 C5' U C 69 1747 1749 1768 C5' U C 70 1767 1769 1785 C5' U C 73 1784 1786 1805 C5' A C 74 1804 1806 1827 C5' G C 75 1826 1828 1850 C5' G C 76 1849 1851 1873 C5' U C 77 1872 1874 1893 C5' A C 78 1892 1894 1915 C5' G C 79 1914 1916 1938 C5' G C 80 1937 1939 1961 C5' G C 81 1960 1962 1984 C5' C C 82 1983 1985 2004 C5' G C 83 2003 2005 2027 C5' A C 84 2026 2028 2049 C5' A C 85 2048 2050 2071 C5' A C 86 2070 2072 2093 C5' G C 87 2092 2094 2116 C5' C C 88 2115 2117 2136 C5' C C 89 2135 2137 2156 C5' C C 90 2155 2157 2176 C5' G C 91 2175 2177 2199 C5' A C 92 2198 2200 2221 C5' A C 93 2220 2222 2243 C5' U C 94 2242 2244 2263 C5' C C 95 2262 2264 2283 C5' C C 96 2282 2284 2303 C5' G C 97 2302 2304 2326 C5' U C 98 2325 2327 2346 C5' C C 99 2345 2347 2366 C5' A C 100 2365 2367 2388 C5' G C 101 2387 2389 2411 C5' C C 102 2410 2412 2431 C5' U C 103 2430 2432 2451 C5' A C 104 2450 2452 2473 C5' A C 105 2472 2474 2495 C5' C C 106 2494 2496 2515 C5' C C 107 2514 2516 2535 C5' U C 108 2534 2536 2555 C5' C C 109 2554 2556 2575 C5' G C 110 2574 2576 2598 C5' U C 111 2597 2599 2618 C5' A C 112 2617 2619 2640 C5' A C 113 2639 2641 2662 C5' G C 114 2661 2663 2685 C5' C C 115 2684 2686 2705 C5' G C 116 2704 2706 2728 C5' C C 117 2727 2729 2748 C5' G C 118 2747 2749 2771 C5' C C 119 2770 2772 2792 C5' 2BA C 201 2791 2793 2836 C5' 2BA C 202 2835 2837 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 661 P C C 2 distorted distorted 646 662 663 664 681 P G C 3 distorted distorted 669 682 683 684 704 P C C 4 distorted distorted 689 705 706 707 724 P G C 5 distorted distorted 712 725 726 727 747 P C C 6 distorted distorted 732 748 749 750 767 P U C 7 distorted distorted 755 768 769 770 787 P U C 8 distorted distorted 775 788 789 790 807 P A C 9 distorted distorted 795 808 809 810 829 P A C 10 distorted distorted 815 830 831 832 851 P U C 11 distorted distorted 837 852 853 854 871 P C C 12 distorted distorted 859 872 873 874 891 P U C 13 distorted distorted 879 892 893 894 911 P G C 14 distorted distorted 899 912 913 914 934 P A C 15 distorted distorted 919 935 936 937 947 P A C 16 distorted distorted 942 948 949 950 969 P A C 17 distorted distorted 955 970 971 972 991 P U C 18 distorted distorted 977 992 993 994 1011 P C C 19 distorted distorted 999 1012 1013 1014 1031 P A C 20 distorted distorted 1019 1032 1033 1034 1053 P G C 21 distorted distorted 1039 1054 1055 1056 1076 P A C 22 distorted distorted 1061 1077 1078 1079 1098 P G C 23 distorted distorted 1084 1099 1100 1101 1121 P C C 24 distorted distorted 1106 1122 1123 1124 1141 P G C 25 distorted distorted 1129 1142 1143 1144 1164 P G C 26 distorted distorted 1149 1165 1166 1167 1187 P G C 27 distorted distorted 1172 1188 1189 1190 1210 P G C 28 distorted distorted 1195 1211 1212 1213 1233 P G C 29 distorted distorted 1218 1234 1235 1236 1256 P A C 30 distorted distorted 1241 1257 1258 1259 1278 P C C 31 distorted distorted 1264 1279 1280 1281 1298 P C C 32 distorted distorted 1286 1299 1300 1301 1318 P C C 33 distorted distorted 1306 1319 1320 1321 1338 P A C 34 distorted distorted 1326 1339 1340 1341 1360 P U C 35 distorted distorted 1346 1361 1362 1363 1380 P U C 36 distorted distorted 1368 1381 1382 1383 1400 P G C 37 distorted distorted 1388 1401 1402 1403 1423 P C C 38 distorted distorted 1408 1424 1425 1426 1443 P A C 39 distorted distorted 1431 1444 1445 1446 1465 P C C 40 distorted distorted 1451 1466 1467 1468 1485 P A C 57 1486 1505 P G C 58 distorted distorted 1491 1506 1507 1508 1528 P G C 59 distorted distorted 1513 1529 1530 1531 1551 P G C 60 distorted distorted 1536 1552 1553 1554 1574 P G C 61 distorted distorted 1559 1575 1576 1577 1597 P U C 62 distorted distorted 1582 1598 1599 1600 1617 P G C 63 distorted distorted 1605 1618 1619 1620 1640 P A C 64 distorted distorted 1625 1641 1642 1643 1662 P A C 65 distorted distorted 1648 1663 1664 1665 1684 P U C 66 distorted distorted 1670 1685 1686 1687 1704 P C C 67 distorted distorted 1692 1705 1706 1707 1724 P C C 68 distorted distorted 1712 1725 1726 1727 1744 P U C 69 distorted distorted 1732 1745 1746 1747 1764 P U C 70 distorted distorted 1752 1765 1766 1767 1801 P A C 74 distorted distorted 1789 1802 1803 1804 1823 P G C 75 distorted distorted 1809 1824 1825 1826 1846 P G C 76 distorted distorted 1831 1847 1848 1849 1869 P U C 77 distorted distorted 1854 1870 1871 1872 1889 P A C 78 distorted distorted 1877 1890 1891 1892 1911 P G C 79 distorted distorted 1897 1912 1913 1914 1934 P G C 80 distorted distorted 1919 1935 1936 1937 1957 P G C 81 distorted distorted 1942 1958 1959 1960 1980 P C C 82 distorted distorted 1965 1981 1982 1983 2000 P G C 83 distorted distorted 1988 2001 2002 2003 2023 P A C 84 distorted distorted 2008 2024 2025 2026 2045 P A C 85 distorted distorted 2031 2046 2047 2048 2067 P A C 86 distorted distorted 2053 2068 2069 2070 2089 P G C 87 distorted distorted 2075 2090 2091 2092 2112 P C C 88 distorted distorted 2097 2113 2114 2115 2132 P C C 89 distorted distorted 2120 2133 2134 2135 2152 P C C 90 distorted distorted 2140 2153 2154 2155 2172 P G C 91 distorted distorted 2160 2173 2174 2175 2195 P A C 92 distorted distorted 2180 2196 2197 2198 2217 P A C 93 distorted distorted 2203 2218 2219 2220 2239 P U C 94 distorted distorted 2225 2240 2241 2242 2259 P C C 95 distorted distorted 2247 2260 2261 2262 2279 P C C 96 distorted distorted 2267 2280 2281 2282 2299 P G C 97 distorted distorted 2287 2300 2301 2302 2322 P U C 98 distorted distorted 2307 2323 2324 2325 2342 P C C 99 distorted distorted 2330 2343 2344 2345 2362 P A C 100 distorted distorted 2350 2363 2364 2365 2384 P G C 101 distorted distorted 2370 2385 2386 2387 2407 P C C 102 distorted distorted 2392 2408 2409 2410 2427 P U C 103 distorted distorted 2415 2428 2429 2430 2447 P A C 104 distorted distorted 2435 2448 2449 2450 2469 P A C 105 distorted distorted 2455 2470 2471 2472 2491 P C C 106 distorted distorted 2477 2492 2493 2494 2511 P C C 107 distorted distorted 2499 2512 2513 2514 2531 P U C 108 distorted distorted 2519 2532 2533 2534 2551 P C C 109 distorted distorted 2539 2552 2553 2554 2571 P G C 110 distorted distorted 2559 2572 2573 2574 2594 P U C 111 distorted distorted 2579 2595 2596 2597 2614 P A C 112 distorted distorted 2602 2615 2616 2617 2636 P A C 113 distorted distorted 2622 2637 2638 2639 2658 P G C 114 distorted distorted 2644 2659 2660 2661 2681 P C C 115 distorted distorted 2666 2682 2683 2684 2701 P G C 116 distorted distorted 2689 2702 2703 2704 2724 P C C 117 distorted distorted 2709 2725 2726 2727 2744 P G C 118 distorted distorted 2732 2745 2746 2747 2767 P C C 119 distorted distorted 2752 2768 2769 2770 2788 P 2BA C 201 distorted distorted 2789 2790 2791 2832 P 2BA C 202 distorted distorted 2833 2834 2835 ---------------------------------------------------------------------------------