ID code: '4UYK' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 1398 C1' G R 6 beta 1393 1399 1396 1421 C1' G R 7 beta 1416 1422 1419 1444 C1' G R 8 beta 1439 1445 1442 1467 C1' G R 9 beta 1462 1468 1465 1490 C1' C R 10 beta 1485 1491 1488 1510 C1' U R 11 beta 1505 1511 1508 1530 C1' A R 12 beta 1525 1531 1528 1552 C1' G R 13 beta 1547 1553 1550 1575 C1' G R 14 beta 1570 1576 1573 1598 C1' C R 15 beta 1593 1599 1596 1618 C1' C R 16 beta 1613 1619 1616 1638 C1' G R 17 beta 1633 1639 1636 1661 C1' G R 18 beta 1656 1662 1659 1684 C1' G R 19 beta 1679 1685 1682 1707 C1' G R 20 beta 1702 1708 1705 1730 C1' G R 21 beta 1725 1731 1728 1753 C1' G R 22 beta 1748 1754 1751 1776 C1' U R 23 beta 1771 1777 1774 1796 C1' U R 24 beta 1791 1797 1794 1816 C1' C R 25 beta 1811 1817 1814 1836 C1' G R 26 beta 1831 1837 1834 1859 C1' G R 27 beta 1854 1860 1857 1882 C1' C R 28 beta 1877 1883 1880 1902 C1' G R 29 beta 1897 1903 1900 1925 C1' U R 30 beta 1920 1926 1923 1945 C1' C R 31 beta 1940 1946 1943 1965 C1' C R 32 beta 1960 1966 1963 1985 C1' C R 33 beta 1980 1986 1983 2005 C1' C R 34 beta 2000 2006 2003 2025 C1' U R 35 beta 2020 2026 2023 2045 C1' G R 36 beta 2040 2046 2043 2068 C1' U R 37 beta 2063 2069 2066 2088 C1' A R 38 beta 2083 2089 2086 2110 C1' A R 39 beta 2105 2111 2108 2132 C1' C R 40 beta 2127 2133 2130 2152 C1' C R 41 beta 2147 2153 2150 2172 C1' G R 42 beta 2167 2173 2170 2195 C1' G R 43 beta 2190 2196 2193 2218 C1' A R 44 beta 2213 2219 2216 2240 C1' A R 45 beta 2235 2241 2238 2262 C1' A R 46 beta 2257 2263 2260 2284 C1' C R 47 beta 2279 2285 2282 2304 C1' C R 48 beta 2299 2305 2302 2324 C1' G R 49 beta 2319 2325 2322 2347 C1' C R 50 beta 2342 2348 2345 2367 C1' C R 51 beta 2362 2368 2365 2387 C1' G R 52 beta 2382 2388 2385 2410 C1' A R 53 beta 2405 2411 2408 2432 C1' U R 54 beta 2427 2433 2430 2452 C1' A R 55 beta 2447 2453 2450 2474 C1' U R 56 beta 2469 2475 2472 2494 C1' G R 57 beta 2489 2495 2492 2517 C1' C R 58 beta 2512 2518 2515 2537 C1' C R 59 beta 2532 2538 2535 2557 C1' G R 60 beta 2552 2558 2555 2580 C1' G R 61 beta 2575 2581 2578 2603 C1' G R 62 beta 2598 2604 2601 2626 C1' G R 63 beta 2621 2627 2624 2649 C1' C R 64 beta 2644 2650 2647 2669 C1' C R 65 beta 2664 2670 2667 2689 C1' G R 66 beta 2684 2690 2687 2712 C1' A R 67 beta 2707 2713 2710 2734 C1' A R 68 beta 2729 2735 2732 2756 C1' G R 69 beta 2751 2757 2754 2779 C1' C R 70 beta 2774 2780 2777 2799 C1' C R 71 beta 2794 2800 2797 2819 C1' C R 72 beta 2814 2820 2817 2839 C1' G R 73 beta 2834 2840 2837 2862 C1' A R 74 beta 2857 2863 2860 2884 C1' G R 75 beta 2879 2885 2882 2907 C1' G R 76 beta 2902 2908 2905 2930 C1' G R 77 beta 2925 2931 2928 2953 C1' G R 78 beta 2948 2954 2951 2976 C1' C R 79 beta 2971 2977 2974 2996 C1' G R 80 beta 2991 2997 2994 3019 C1' G R 81 beta 3014 3020 3017 3042 C1' U R 82 beta 3037 3043 3040 3062 C1' U R 83 beta 3057 3063 3060 3082 C1' C R 84 beta 3077 3083 3080 3102 C1' C R 85 beta 3097 3103 3100 3122 C1' C R 86 beta 3117 3123 3120 3142 C1' G R 87 beta 3137 3143 3140 3165 C1' A R 88 beta 3160 3166 3163 3187 C1' A R 89 beta 3182 3188 3185 3209 C1' G R 90 beta 3204 3210 3207 3232 C1' C R 91 beta 3227 3233 3230 3252 C1' C R 92 beta 3247 3253 3250 3272 C1' G R 93 beta 3267 3273 3270 3295 C1' C R 94 beta 3290 3296 3293 3315 C1' C R 95 beta 3310 3316 3313 3335 C1' U R 96 beta 3330 3336 3333 3355 C1' C R 97 beta 3350 3356 3353 3375 C1' U R 98 beta 3370 3376 3373 3395 C1' G R 99 beta 3390 3396 3393 3418 C1' U R 100 beta 3413 3419 3416 3438 C1' A R 101 beta 3433 3439 3436 3460 C1' A R 102 beta 3455 3461 3458 3482 C1' G R 103 beta 3477 3483 3480 3505 C1' G R 104 beta 3500 3506 3503 3528 C1' A R 105 beta 3523 3529 3526 3550 C1' G R 106 beta 3545 3551 3548 3573 C1' G R 107 beta 3568 3574 3571 3596 C1' C R 108 beta 3591 3597 3594 3616 C1' G R 109 beta 3611 3617 3614 3639 C1' G R 110 beta 3634 3640 3637 3662 C1' U R 111 beta 3657 3663 3660 3682 C1' G R 112 beta 3677 3683 3680 3705 C1' G R 113 beta 3700 3706 3703 3728 C1' A R 114 beta 3723 3729 3726 3750 C1' G R 115 beta 3745 3751 3748 3773 C1' G R 116 beta 3768 3774 3771 3796 C1' G R 117 beta 3791 3797 3794 3819 C1' U R 118 beta 3814 3820 3817 3839 C1' U R 119 beta 3834 3840 3837 3859 C1' C R 120 beta 3854 3860 3857 3879 C1' C R 121 beta 3874 3880 3877 3899 C1' C R 122 beta 3894 3900 3897 3919 C1' A R 123 beta 3914 3920 3917 3941 C1' C R 124 beta 3936 3942 3939 3961 C1' C R 125 beta 3956 3962 3959 3981 C1' C R 126 beta 3976 3982 3979 4001 C1' U R 127 beta 3996 4002 3999 4021 C1' C R 128 beta 4016 4022 4019 4041 C1' G R 129 beta 4036 4042 4039 4064 C1' G R 130 beta 4059 4065 4062 4087 C1' G R 131 beta 4082 4088 4085 4110 C1' C R 132 beta 4105 4111 4108 4130 C1' G R 133 beta 4125 4131 4128 4153 C1' U R 134 beta 4148 4154 4151 4173 C1' G R 135 beta 4168 4174 4171 4196 C1' C R 136 beta 4191 4197 4194 4216 C1' C R 137 beta 4211 4217 4214 4236 C1' U R 138 beta 4231 4237 4234 4259 C1' CCC R 139 beta 4254 4260 4257 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 1396 C2' G R 6 OK 1398 1394 1397 1419 C2' G R 7 OK 1421 1417 1420 1442 C2' G R 8 OK 1444 1440 1443 1465 C2' G R 9 OK 1467 1463 1466 1488 C2' C R 10 OK 1490 1486 1489 1508 C2' U R 11 OK 1510 1506 1509 1528 C2' A R 12 OK 1530 1526 1529 1550 C2' G R 13 OK 1552 1548 1551 1573 C2' G R 14 OK 1575 1571 1574 1596 C2' C R 15 OK 1598 1594 1597 1616 C2' C R 16 OK 1618 1614 1617 1636 C2' G R 17 OK 1638 1634 1637 1659 C2' G R 18 OK 1661 1657 1660 1682 C2' G R 19 OK 1684 1680 1683 1705 C2' G R 20 OK 1707 1703 1706 1728 C2' G R 21 OK 1730 1726 1729 1751 C2' G R 22 OK 1753 1749 1752 1774 C2' U R 23 OK 1776 1772 1775 1794 C2' U R 24 OK 1796 1792 1795 1814 C2' C R 25 OK 1816 1812 1815 1834 C2' G R 26 OK 1836 1832 1835 1857 C2' G R 27 OK 1859 1855 1858 1880 C2' C R 28 OK 1882 1878 1881 1900 C2' G R 29 OK 1902 1898 1901 1923 C2' U R 30 OK 1925 1921 1924 1943 C2' C R 31 OK 1945 1941 1944 1963 C2' C R 32 OK 1965 1961 1964 1983 C2' C R 33 OK 1985 1981 1984 2003 C2' C R 34 OK 2005 2001 2004 2023 C2' U R 35 OK 2025 2021 2024 2043 C2' G R 36 OK 2045 2041 2044 2066 C2' U R 37 OK 2068 2064 2067 2086 C2' A R 38 OK 2088 2084 2087 2108 C2' A R 39 OK 2110 2106 2109 2130 C2' C R 40 OK 2132 2128 2131 2150 C2' C R 41 OK 2152 2148 2151 2170 C2' G R 42 OK 2172 2168 2171 2193 C2' G R 43 OK 2195 2191 2194 2216 C2' A R 44 OK 2218 2214 2217 2238 C2' A R 45 OK 2240 2236 2239 2260 C2' A R 46 OK 2262 2258 2261 2282 C2' C R 47 OK 2284 2280 2283 2302 C2' C R 48 OK 2304 2300 2303 2322 C2' G R 49 OK 2324 2320 2323 2345 C2' C R 50 OK 2347 2343 2346 2365 C2' C R 51 OK 2367 2363 2366 2385 C2' G R 52 OK 2387 2383 2386 2408 C2' A R 53 OK 2410 2406 2409 2430 C2' U R 54 OK 2432 2428 2431 2450 C2' A R 55 OK 2452 2448 2451 2472 C2' U R 56 OK 2474 2470 2473 2492 C2' G R 57 OK 2494 2490 2493 2515 C2' C R 58 OK 2517 2513 2516 2535 C2' C R 59 OK 2537 2533 2536 2555 C2' G R 60 OK 2557 2553 2556 2578 C2' G R 61 OK 2580 2576 2579 2601 C2' G R 62 OK 2603 2599 2602 2624 C2' G R 63 OK 2626 2622 2625 2647 C2' C R 64 OK 2649 2645 2648 2667 C2' C R 65 OK 2669 2665 2668 2687 C2' G R 66 OK 2689 2685 2688 2710 C2' A R 67 OK 2712 2708 2711 2732 C2' A R 68 OK 2734 2730 2733 2754 C2' G R 69 OK 2756 2752 2755 2777 C2' C R 70 OK 2779 2775 2778 2797 C2' C R 71 OK 2799 2795 2798 2817 C2' C R 72 OK 2819 2815 2818 2837 C2' G R 73 OK 2839 2835 2838 2860 C2' A R 74 OK 2862 2858 2861 2882 C2' G R 75 OK 2884 2880 2883 2905 C2' G R 76 OK 2907 2903 2906 2928 C2' G R 77 OK 2930 2926 2929 2951 C2' G R 78 OK 2953 2949 2952 2974 C2' C R 79 OK 2976 2972 2975 2994 C2' G R 80 OK 2996 2992 2995 3017 C2' G R 81 OK 3019 3015 3018 3040 C2' U R 82 OK 3042 3038 3041 3060 C2' U R 83 OK 3062 3058 3061 3080 C2' C R 84 OK 3082 3078 3081 3100 C2' C R 85 OK 3102 3098 3101 3120 C2' C R 86 OK 3122 3118 3121 3140 C2' G R 87 OK 3142 3138 3141 3163 C2' A R 88 OK 3165 3161 3164 3185 C2' A R 89 OK 3187 3183 3186 3207 C2' G R 90 OK 3209 3205 3208 3230 C2' C R 91 OK 3232 3228 3231 3250 C2' C R 92 OK 3252 3248 3251 3270 C2' G R 93 OK 3272 3268 3271 3293 C2' C R 94 OK 3295 3291 3294 3313 C2' C R 95 OK 3315 3311 3314 3333 C2' U R 96 OK 3335 3331 3334 3353 C2' C R 97 OK 3355 3351 3354 3373 C2' U R 98 OK 3375 3371 3374 3393 C2' G R 99 OK 3395 3391 3394 3416 C2' U R 100 OK 3418 3414 3417 3436 C2' A R 101 OK 3438 3434 3437 3458 C2' A R 102 OK 3460 3456 3459 3480 C2' G R 103 OK 3482 3478 3481 3503 C2' G R 104 OK 3505 3501 3504 3526 C2' A R 105 OK 3528 3524 3527 3548 C2' G R 106 OK 3550 3546 3549 3571 C2' G R 107 OK 3573 3569 3572 3594 C2' C R 108 OK 3596 3592 3595 3614 C2' G R 109 OK 3616 3612 3615 3637 C2' G R 110 OK 3639 3635 3638 3660 C2' U R 111 OK 3662 3658 3661 3680 C2' G R 112 OK 3682 3678 3681 3703 C2' G R 113 OK 3705 3701 3704 3726 C2' A R 114 OK 3728 3724 3727 3748 C2' G R 115 OK 3750 3746 3749 3771 C2' G R 116 OK 3773 3769 3772 3794 C2' G R 117 OK 3796 3792 3795 3817 C2' U R 118 OK 3819 3815 3818 3837 C2' U R 119 OK 3839 3835 3838 3857 C2' C R 120 OK 3859 3855 3858 3877 C2' C R 121 OK 3879 3875 3878 3897 C2' C R 122 OK 3899 3895 3898 3917 C2' A R 123 OK 3919 3915 3918 3939 C2' C R 124 OK 3941 3937 3940 3959 C2' C R 125 OK 3961 3957 3960 3979 C2' C R 126 OK 3981 3977 3980 3999 C2' U R 127 OK 4001 3997 4000 4019 C2' C R 128 OK 4021 4017 4020 4039 C2' G R 129 OK 4041 4037 4040 4062 C2' G R 130 OK 4064 4060 4063 4085 C2' G R 131 OK 4087 4083 4086 4108 C2' C R 132 OK 4110 4106 4109 4128 C2' G R 133 OK 4130 4126 4129 4151 C2' U R 134 OK 4153 4149 4152 4171 C2' G R 135 OK 4173 4169 4172 4194 C2' C R 136 OK 4196 4192 4195 4214 C2' C R 137 OK 4216 4212 4215 4234 C2' U R 138 OK 4236 4232 4235 4257 C2' CCC R 139 OK 4259 4255 4258 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 1394 C3' G R 6 OK 1392 1395 1396 1417 C3' G R 7 OK 1415 1418 1419 1440 C3' G R 8 OK 1438 1441 1442 1463 C3' G R 9 OK 1461 1464 1465 1486 C3' C R 10 OK 1484 1487 1488 1506 C3' U R 11 OK 1504 1507 1508 1526 C3' A R 12 OK 1524 1527 1528 1548 C3' G R 13 OK 1546 1549 1550 1571 C3' G R 14 OK 1569 1572 1573 1594 C3' C R 15 OK 1592 1595 1596 1614 C3' C R 16 OK 1612 1615 1616 1634 C3' G R 17 OK 1632 1635 1636 1657 C3' G R 18 OK 1655 1658 1659 1680 C3' G R 19 OK 1678 1681 1682 1703 C3' G R 20 OK 1701 1704 1705 1726 C3' G R 21 OK 1724 1727 1728 1749 C3' G R 22 OK 1747 1750 1751 1772 C3' U R 23 OK 1770 1773 1774 1792 C3' U R 24 OK 1790 1793 1794 1812 C3' C R 25 OK 1810 1813 1814 1832 C3' G R 26 OK 1830 1833 1834 1855 C3' G R 27 OK 1853 1856 1857 1878 C3' C R 28 OK 1876 1879 1880 1898 C3' G R 29 OK 1896 1899 1900 1921 C3' U R 30 OK 1919 1922 1923 1941 C3' C R 31 OK 1939 1942 1943 1961 C3' C R 32 OK 1959 1962 1963 1981 C3' C R 33 OK 1979 1982 1983 2001 C3' C R 34 OK 1999 2002 2003 2021 C3' U R 35 OK 2019 2022 2023 2041 C3' G R 36 OK 2039 2042 2043 2064 C3' U R 37 OK 2062 2065 2066 2084 C3' A R 38 OK 2082 2085 2086 2106 C3' A R 39 OK 2104 2107 2108 2128 C3' C R 40 OK 2126 2129 2130 2148 C3' C R 41 OK 2146 2149 2150 2168 C3' G R 42 OK 2166 2169 2170 2191 C3' G R 43 OK 2189 2192 2193 2214 C3' A R 44 OK 2212 2215 2216 2236 C3' A R 45 OK 2234 2237 2238 2258 C3' A R 46 OK 2256 2259 2260 2280 C3' C R 47 OK 2278 2281 2282 2300 C3' C R 48 OK 2298 2301 2302 2320 C3' G R 49 OK 2318 2321 2322 2343 C3' C R 50 OK 2341 2344 2345 2363 C3' C R 51 OK 2361 2364 2365 2383 C3' G R 52 OK 2381 2384 2385 2406 C3' A R 53 OK 2404 2407 2408 2428 C3' U R 54 OK 2426 2429 2430 2448 C3' A R 55 OK 2446 2449 2450 2470 C3' U R 56 OK 2468 2471 2472 2490 C3' G R 57 OK 2488 2491 2492 2513 C3' C R 58 OK 2511 2514 2515 2533 C3' C R 59 OK 2531 2534 2535 2553 C3' G R 60 OK 2551 2554 2555 2576 C3' G R 61 OK 2574 2577 2578 2599 C3' G R 62 OK 2597 2600 2601 2622 C3' G R 63 OK 2620 2623 2624 2645 C3' C R 64 OK 2643 2646 2647 2665 C3' C R 65 OK 2663 2666 2667 2685 C3' G R 66 OK 2683 2686 2687 2708 C3' A R 67 OK 2706 2709 2710 2730 C3' A R 68 OK 2728 2731 2732 2752 C3' G R 69 OK 2750 2753 2754 2775 C3' C R 70 OK 2773 2776 2777 2795 C3' C R 71 OK 2793 2796 2797 2815 C3' C R 72 OK 2813 2816 2817 2835 C3' G R 73 OK 2833 2836 2837 2858 C3' A R 74 OK 2856 2859 2860 2880 C3' G R 75 OK 2878 2881 2882 2903 C3' G R 76 OK 2901 2904 2905 2926 C3' G R 77 OK 2924 2927 2928 2949 C3' G R 78 OK 2947 2950 2951 2972 C3' C R 79 OK 2970 2973 2974 2992 C3' G R 80 OK 2990 2993 2994 3015 C3' G R 81 OK 3013 3016 3017 3038 C3' U R 82 OK 3036 3039 3040 3058 C3' U R 83 OK 3056 3059 3060 3078 C3' C R 84 OK 3076 3079 3080 3098 C3' C R 85 OK 3096 3099 3100 3118 C3' C R 86 OK 3116 3119 3120 3138 C3' G R 87 OK 3136 3139 3140 3161 C3' A R 88 OK 3159 3162 3163 3183 C3' A R 89 OK 3181 3184 3185 3205 C3' G R 90 OK 3203 3206 3207 3228 C3' C R 91 OK 3226 3229 3230 3248 C3' C R 92 OK 3246 3249 3250 3268 C3' G R 93 OK 3266 3269 3270 3291 C3' C R 94 OK 3289 3292 3293 3311 C3' C R 95 OK 3309 3312 3313 3331 C3' U R 96 OK 3329 3332 3333 3351 C3' C R 97 OK 3349 3352 3353 3371 C3' U R 98 OK 3369 3372 3373 3391 C3' G R 99 OK 3389 3392 3393 3414 C3' U R 100 OK 3412 3415 3416 3434 C3' A R 101 OK 3432 3435 3436 3456 C3' A R 102 OK 3454 3457 3458 3478 C3' G R 103 OK 3476 3479 3480 3501 C3' G R 104 OK 3499 3502 3503 3524 C3' A R 105 OK 3522 3525 3526 3546 C3' G R 106 OK 3544 3547 3548 3569 C3' G R 107 OK 3567 3570 3571 3592 C3' C R 108 OK 3590 3593 3594 3612 C3' G R 109 OK 3610 3613 3614 3635 C3' G R 110 OK 3633 3636 3637 3658 C3' U R 111 OK 3656 3659 3660 3678 C3' G R 112 OK 3676 3679 3680 3701 C3' G R 113 OK 3699 3702 3703 3724 C3' A R 114 OK 3722 3725 3726 3746 C3' G R 115 OK 3744 3747 3748 3769 C3' G R 116 OK 3767 3770 3771 3792 C3' G R 117 OK 3790 3793 3794 3815 C3' U R 118 OK 3813 3816 3817 3835 C3' U R 119 OK 3833 3836 3837 3855 C3' C R 120 OK 3853 3856 3857 3875 C3' C R 121 OK 3873 3876 3877 3895 C3' C R 122 OK 3893 3896 3897 3915 C3' A R 123 OK 3913 3916 3917 3937 C3' C R 124 OK 3935 3938 3939 3957 C3' C R 125 OK 3955 3958 3959 3977 C3' C R 126 OK 3975 3978 3979 3997 C3' U R 127 OK 3995 3998 3999 4017 C3' C R 128 OK 4015 4018 4019 4037 C3' G R 129 OK 4035 4038 4039 4060 C3' G R 130 OK 4058 4061 4062 4083 C3' G R 131 OK 4081 4084 4085 4106 C3' C R 132 OK 4104 4107 4108 4126 C3' G R 133 OK 4124 4127 4128 4149 C3' U R 134 OK 4147 4150 4151 4169 C3' G R 135 OK 4167 4170 4171 4192 C3' C R 136 OK 4190 4193 4194 4212 C3' C R 137 OK 4210 4213 4214 4232 C3' U R 138 OK 4230 4233 4234 4255 C3' CCC R 139 OK 4253 4256 4257 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 1392 C4' G R 6 OK 1394 1391 1393 1415 C4' G R 7 OK 1417 1414 1416 1438 C4' G R 8 OK 1440 1437 1439 1461 C4' G R 9 OK 1463 1460 1462 1484 C4' C R 10 OK 1486 1483 1485 1504 C4' U R 11 OK 1506 1503 1505 1524 C4' A R 12 OK 1526 1523 1525 1546 C4' G R 13 OK 1548 1545 1547 1569 C4' G R 14 OK 1571 1568 1570 1592 C4' C R 15 OK 1594 1591 1593 1612 C4' C R 16 OK 1614 1611 1613 1632 C4' G R 17 OK 1634 1631 1633 1655 C4' G R 18 OK 1657 1654 1656 1678 C4' G R 19 OK 1680 1677 1679 1701 C4' G R 20 OK 1703 1700 1702 1724 C4' G R 21 OK 1726 1723 1725 1747 C4' G R 22 OK 1749 1746 1748 1770 C4' U R 23 OK 1772 1769 1771 1790 C4' U R 24 OK 1792 1789 1791 1810 C4' C R 25 OK 1812 1809 1811 1830 C4' G R 26 OK 1832 1829 1831 1853 C4' G R 27 OK 1855 1852 1854 1876 C4' C R 28 OK 1878 1875 1877 1896 C4' G R 29 OK 1898 1895 1897 1919 C4' U R 30 OK 1921 1918 1920 1939 C4' C R 31 OK 1941 1938 1940 1959 C4' C R 32 OK 1961 1958 1960 1979 C4' C R 33 OK 1981 1978 1980 1999 C4' C R 34 OK 2001 1998 2000 2019 C4' U R 35 OK 2021 2018 2020 2039 C4' G R 36 OK 2041 2038 2040 2062 C4' U R 37 OK 2064 2061 2063 2082 C4' A R 38 OK 2084 2081 2083 2104 C4' A R 39 OK 2106 2103 2105 2126 C4' C R 40 OK 2128 2125 2127 2146 C4' C R 41 OK 2148 2145 2147 2166 C4' G R 42 OK 2168 2165 2167 2189 C4' G R 43 OK 2191 2188 2190 2212 C4' A R 44 OK 2214 2211 2213 2234 C4' A R 45 OK 2236 2233 2235 2256 C4' A R 46 OK 2258 2255 2257 2278 C4' C R 47 OK 2280 2277 2279 2298 C4' C R 48 OK 2300 2297 2299 2318 C4' G R 49 OK 2320 2317 2319 2341 C4' C R 50 OK 2343 2340 2342 2361 C4' C R 51 OK 2363 2360 2362 2381 C4' G R 52 OK 2383 2380 2382 2404 C4' A R 53 OK 2406 2403 2405 2426 C4' U R 54 OK 2428 2425 2427 2446 C4' A R 55 OK 2448 2445 2447 2468 C4' U R 56 OK 2470 2467 2469 2488 C4' G R 57 OK 2490 2487 2489 2511 C4' C R 58 OK 2513 2510 2512 2531 C4' C R 59 OK 2533 2530 2532 2551 C4' G R 60 OK 2553 2550 2552 2574 C4' G R 61 OK 2576 2573 2575 2597 C4' G R 62 OK 2599 2596 2598 2620 C4' G R 63 OK 2622 2619 2621 2643 C4' C R 64 OK 2645 2642 2644 2663 C4' C R 65 OK 2665 2662 2664 2683 C4' G R 66 OK 2685 2682 2684 2706 C4' A R 67 OK 2708 2705 2707 2728 C4' A R 68 OK 2730 2727 2729 2750 C4' G R 69 OK 2752 2749 2751 2773 C4' C R 70 OK 2775 2772 2774 2793 C4' C R 71 OK 2795 2792 2794 2813 C4' C R 72 OK 2815 2812 2814 2833 C4' G R 73 OK 2835 2832 2834 2856 C4' A R 74 OK 2858 2855 2857 2878 C4' G R 75 OK 2880 2877 2879 2901 C4' G R 76 OK 2903 2900 2902 2924 C4' G R 77 OK 2926 2923 2925 2947 C4' G R 78 OK 2949 2946 2948 2970 C4' C R 79 OK 2972 2969 2971 2990 C4' G R 80 OK 2992 2989 2991 3013 C4' G R 81 OK 3015 3012 3014 3036 C4' U R 82 OK 3038 3035 3037 3056 C4' U R 83 OK 3058 3055 3057 3076 C4' C R 84 OK 3078 3075 3077 3096 C4' C R 85 OK 3098 3095 3097 3116 C4' C R 86 OK 3118 3115 3117 3136 C4' G R 87 OK 3138 3135 3137 3159 C4' A R 88 OK 3161 3158 3160 3181 C4' A R 89 OK 3183 3180 3182 3203 C4' G R 90 OK 3205 3202 3204 3226 C4' C R 91 OK 3228 3225 3227 3246 C4' C R 92 OK 3248 3245 3247 3266 C4' G R 93 OK 3268 3265 3267 3289 C4' C R 94 OK 3291 3288 3290 3309 C4' C R 95 OK 3311 3308 3310 3329 C4' U R 96 OK 3331 3328 3330 3349 C4' C R 97 OK 3351 3348 3350 3369 C4' U R 98 OK 3371 3368 3370 3389 C4' G R 99 OK 3391 3388 3390 3412 C4' U R 100 OK 3414 3411 3413 3432 C4' A R 101 OK 3434 3431 3433 3454 C4' A R 102 OK 3456 3453 3455 3476 C4' G R 103 OK 3478 3475 3477 3499 C4' G R 104 OK 3501 3498 3500 3522 C4' A R 105 OK 3524 3521 3523 3544 C4' G R 106 OK 3546 3543 3545 3567 C4' G R 107 OK 3569 3566 3568 3590 C4' C R 108 OK 3592 3589 3591 3610 C4' G R 109 OK 3612 3609 3611 3633 C4' G R 110 OK 3635 3632 3634 3656 C4' U R 111 OK 3658 3655 3657 3676 C4' G R 112 OK 3678 3675 3677 3699 C4' G R 113 OK 3701 3698 3700 3722 C4' A R 114 OK 3724 3721 3723 3744 C4' G R 115 OK 3746 3743 3745 3767 C4' G R 116 OK 3769 3766 3768 3790 C4' G R 117 OK 3792 3789 3791 3813 C4' U R 118 OK 3815 3812 3814 3833 C4' U R 119 OK 3835 3832 3834 3853 C4' C R 120 OK 3855 3852 3854 3873 C4' C R 121 OK 3875 3872 3874 3893 C4' C R 122 OK 3895 3892 3894 3913 C4' A R 123 OK 3915 3912 3914 3935 C4' C R 124 OK 3937 3934 3936 3955 C4' C R 125 OK 3957 3954 3956 3975 C4' C R 126 OK 3977 3974 3976 3995 C4' U R 127 OK 3997 3994 3996 4015 C4' C R 128 OK 4017 4014 4016 4035 C4' G R 129 OK 4037 4034 4036 4058 C4' G R 130 OK 4060 4057 4059 4081 C4' G R 131 OK 4083 4080 4082 4104 C4' C R 132 OK 4106 4103 4105 4124 C4' G R 133 OK 4126 4123 4125 4147 C4' U R 134 OK 4149 4146 4148 4167 C4' G R 135 OK 4169 4166 4168 4190 C4' C R 136 OK 4192 4189 4191 4210 C4' C R 137 OK 4212 4209 4211 4230 C4' U R 138 OK 4232 4229 4231 4253 C4' CCC R 139 OK 4255 4252 4254 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 1391 C5' G R 6 1390 1392 1414 C5' G R 7 1413 1415 1437 C5' G R 8 1436 1438 1460 C5' G R 9 1459 1461 1483 C5' C R 10 1482 1484 1503 C5' U R 11 1502 1504 1523 C5' A R 12 1522 1524 1545 C5' G R 13 1544 1546 1568 C5' G R 14 1567 1569 1591 C5' C R 15 1590 1592 1611 C5' C R 16 1610 1612 1631 C5' G R 17 1630 1632 1654 C5' G R 18 1653 1655 1677 C5' G R 19 1676 1678 1700 C5' G R 20 1699 1701 1723 C5' G R 21 1722 1724 1746 C5' G R 22 1745 1747 1769 C5' U R 23 1768 1770 1789 C5' U R 24 1788 1790 1809 C5' C R 25 1808 1810 1829 C5' G R 26 1828 1830 1852 C5' G R 27 1851 1853 1875 C5' C R 28 1874 1876 1895 C5' G R 29 1894 1896 1918 C5' U R 30 1917 1919 1938 C5' C R 31 1937 1939 1958 C5' C R 32 1957 1959 1978 C5' C R 33 1977 1979 1998 C5' C R 34 1997 1999 2018 C5' U R 35 2017 2019 2038 C5' G R 36 2037 2039 2061 C5' U R 37 2060 2062 2081 C5' A R 38 2080 2082 2103 C5' A R 39 2102 2104 2125 C5' C R 40 2124 2126 2145 C5' C R 41 2144 2146 2165 C5' G R 42 2164 2166 2188 C5' G R 43 2187 2189 2211 C5' A R 44 2210 2212 2233 C5' A R 45 2232 2234 2255 C5' A R 46 2254 2256 2277 C5' C R 47 2276 2278 2297 C5' C R 48 2296 2298 2317 C5' G R 49 2316 2318 2340 C5' C R 50 2339 2341 2360 C5' C R 51 2359 2361 2380 C5' G R 52 2379 2381 2403 C5' A R 53 2402 2404 2425 C5' U R 54 2424 2426 2445 C5' A R 55 2444 2446 2467 C5' U R 56 2466 2468 2487 C5' G R 57 2486 2488 2510 C5' C R 58 2509 2511 2530 C5' C R 59 2529 2531 2550 C5' G R 60 2549 2551 2573 C5' G R 61 2572 2574 2596 C5' G R 62 2595 2597 2619 C5' G R 63 2618 2620 2642 C5' C R 64 2641 2643 2662 C5' C R 65 2661 2663 2682 C5' G R 66 2681 2683 2705 C5' A R 67 2704 2706 2727 C5' A R 68 2726 2728 2749 C5' G R 69 2748 2750 2772 C5' C R 70 2771 2773 2792 C5' C R 71 2791 2793 2812 C5' C R 72 2811 2813 2832 C5' G R 73 2831 2833 2855 C5' A R 74 2854 2856 2877 C5' G R 75 2876 2878 2900 C5' G R 76 2899 2901 2923 C5' G R 77 2922 2924 2946 C5' G R 78 2945 2947 2969 C5' C R 79 2968 2970 2989 C5' G R 80 2988 2990 3012 C5' G R 81 3011 3013 3035 C5' U R 82 3034 3036 3055 C5' U R 83 3054 3056 3075 C5' C R 84 3074 3076 3095 C5' C R 85 3094 3096 3115 C5' C R 86 3114 3116 3135 C5' G R 87 3134 3136 3158 C5' A R 88 3157 3159 3180 C5' A R 89 3179 3181 3202 C5' G R 90 3201 3203 3225 C5' C R 91 3224 3226 3245 C5' C R 92 3244 3246 3265 C5' G R 93 3264 3266 3288 C5' C R 94 3287 3289 3308 C5' C R 95 3307 3309 3328 C5' U R 96 3327 3329 3348 C5' C R 97 3347 3349 3368 C5' U R 98 3367 3369 3388 C5' G R 99 3387 3389 3411 C5' U R 100 3410 3412 3431 C5' A R 101 3430 3432 3453 C5' A R 102 3452 3454 3475 C5' G R 103 3474 3476 3498 C5' G R 104 3497 3499 3521 C5' A R 105 3520 3522 3543 C5' G R 106 3542 3544 3566 C5' G R 107 3565 3567 3589 C5' C R 108 3588 3590 3609 C5' G R 109 3608 3610 3632 C5' G R 110 3631 3633 3655 C5' U R 111 3654 3656 3675 C5' G R 112 3674 3676 3698 C5' G R 113 3697 3699 3721 C5' A R 114 3720 3722 3743 C5' G R 115 3742 3744 3766 C5' G R 116 3765 3767 3789 C5' G R 117 3788 3790 3812 C5' U R 118 3811 3813 3832 C5' U R 119 3831 3833 3852 C5' C R 120 3851 3853 3872 C5' C R 121 3871 3873 3892 C5' C R 122 3891 3893 3912 C5' A R 123 3911 3913 3934 C5' C R 124 3933 3935 3954 C5' C R 125 3953 3955 3974 C5' C R 126 3973 3975 3994 C5' U R 127 3993 3995 4014 C5' C R 128 4013 4015 4034 C5' G R 129 4033 4035 4057 C5' G R 130 4056 4058 4080 C5' G R 131 4079 4081 4103 C5' C R 132 4102 4104 4123 C5' G R 133 4122 4124 4146 C5' U R 134 4145 4147 4166 C5' G R 135 4165 4167 4189 C5' C R 136 4188 4190 4209 C5' C R 137 4208 4210 4229 C5' U R 138 4228 4230 4252 C5' CCC R 139 4251 4253 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 1387 P G R 6 OK OK 1388 1389 1390 1410 P G R 7 OK OK 1395 1411 1412 1413 1433 P G R 8 OK OK 1418 1434 1435 1436 1456 P G R 9 OK OK 1441 1457 1458 1459 1479 P C R 10 OK OK 1464 1480 1481 1482 1499 P U R 11 OK OK 1487 1500 1501 1502 1519 P A R 12 OK OK 1507 1520 1521 1522 1541 P G R 13 OK OK 1527 1542 1543 1544 1564 P G R 14 OK OK 1549 1565 1566 1567 1587 P C R 15 OK OK 1572 1588 1589 1590 1607 P C R 16 OK OK 1595 1608 1609 1610 1627 P G R 17 OK OK 1615 1628 1629 1630 1650 P G R 18 OK OK 1635 1651 1652 1653 1673 P G R 19 OK OK 1658 1674 1675 1676 1696 P G R 20 OK OK 1681 1697 1698 1699 1719 P G R 21 OK OK 1704 1720 1721 1722 1742 P G R 22 OK OK 1727 1743 1744 1745 1765 P U R 23 OK OK 1750 1766 1767 1768 1785 P U R 24 OK OK 1773 1786 1787 1788 1805 P C R 25 OK OK 1793 1806 1807 1808 1825 P G R 26 OK OK 1813 1826 1827 1828 1848 P G R 27 OK OK 1833 1849 1850 1851 1871 P C R 28 OK OK 1856 1872 1873 1874 1891 P G R 29 OK OK 1879 1892 1893 1894 1914 P U R 30 OK OK 1899 1915 1916 1917 1934 P C R 31 OK OK 1922 1935 1936 1937 1954 P C R 32 OK OK 1942 1955 1956 1957 1974 P C R 33 OK OK 1962 1975 1976 1977 1994 P C R 34 OK OK 1982 1995 1996 1997 2014 P U R 35 OK OK 2002 2015 2016 2017 2034 P G R 36 OK OK 2022 2035 2036 2037 2057 P U R 37 OK OK 2042 2058 2059 2060 2077 P A R 38 OK OK 2065 2078 2079 2080 2099 P A R 39 OK OK 2085 2100 2101 2102 2121 P C R 40 OK OK 2107 2122 2123 2124 2141 P C R 41 OK OK 2129 2142 2143 2144 2161 P G R 42 OK OK 2149 2162 2163 2164 2184 P G R 43 OK OK 2169 2185 2186 2187 2207 P A R 44 OK OK 2192 2208 2209 2210 2229 P A R 45 OK OK 2215 2230 2231 2232 2251 P A R 46 OK OK 2237 2252 2253 2254 2273 P C R 47 OK OK 2259 2274 2275 2276 2293 P C R 48 OK OK 2281 2294 2295 2296 2313 P G R 49 OK OK 2301 2314 2315 2316 2336 P C R 50 OK OK 2321 2337 2338 2339 2356 P C R 51 OK OK 2344 2357 2358 2359 2376 P G R 52 OK OK 2364 2377 2378 2379 2399 P A R 53 OK OK 2384 2400 2401 2402 2421 P U R 54 OK OK 2407 2422 2423 2424 2441 P A R 55 OK OK 2429 2442 2443 2444 2463 P U R 56 OK OK 2449 2464 2465 2466 2483 P G R 57 OK OK 2471 2484 2485 2486 2506 P C R 58 OK OK 2491 2507 2508 2509 2526 P C R 59 OK OK 2514 2527 2528 2529 2546 P G R 60 OK OK 2534 2547 2548 2549 2569 P G R 61 OK OK 2554 2570 2571 2572 2592 P G R 62 OK OK 2577 2593 2594 2595 2615 P G R 63 OK OK 2600 2616 2617 2618 2638 P C R 64 OK OK 2623 2639 2640 2641 2658 P C R 65 OK OK 2646 2659 2660 2661 2678 P G R 66 OK OK 2666 2679 2680 2681 2701 P A R 67 OK OK 2686 2702 2703 2704 2723 P A R 68 OK OK 2709 2724 2725 2726 2745 P G R 69 OK OK 2731 2746 2747 2748 2768 P C R 70 OK OK 2753 2769 2770 2771 2788 P C R 71 OK OK 2776 2789 2790 2791 2808 P C R 72 OK OK 2796 2809 2810 2811 2828 P G R 73 OK OK 2816 2829 2830 2831 2851 P A R 74 OK OK 2836 2852 2853 2854 2873 P G R 75 OK OK 2859 2874 2875 2876 2896 P G R 76 OK OK 2881 2897 2898 2899 2919 P G R 77 OK OK 2904 2920 2921 2922 2942 P G R 78 OK OK 2927 2943 2944 2945 2965 P C R 79 OK OK 2950 2966 2967 2968 2985 P G R 80 OK OK 2973 2986 2987 2988 3008 P G R 81 OK OK 2993 3009 3010 3011 3031 P U R 82 OK OK 3016 3032 3033 3034 3051 P U R 83 OK OK 3039 3052 3053 3054 3071 P C R 84 OK OK 3059 3072 3073 3074 3091 P C R 85 OK OK 3079 3092 3093 3094 3111 P C R 86 OK OK 3099 3112 3113 3114 3131 P G R 87 OK OK 3119 3132 3133 3134 3154 P A R 88 OK OK 3139 3155 3156 3157 3176 P A R 89 OK OK 3162 3177 3178 3179 3198 P G R 90 OK OK 3184 3199 3200 3201 3221 P C R 91 OK OK 3206 3222 3223 3224 3241 P C R 92 OK OK 3229 3242 3243 3244 3261 P G R 93 OK OK 3249 3262 3263 3264 3284 P C R 94 OK OK 3269 3285 3286 3287 3304 P C R 95 OK OK 3292 3305 3306 3307 3324 P U R 96 OK OK 3312 3325 3326 3327 3344 P C R 97 OK OK 3332 3345 3346 3347 3364 P U R 98 OK OK 3352 3365 3366 3367 3384 P G R 99 OK OK 3372 3385 3386 3387 3407 P U R 100 OK OK 3392 3408 3409 3410 3427 P A R 101 OK OK 3415 3428 3429 3430 3449 P A R 102 OK OK 3435 3450 3451 3452 3471 P G R 103 OK OK 3457 3472 3473 3474 3494 P G R 104 OK OK 3479 3495 3496 3497 3517 P A R 105 OK OK 3502 3518 3519 3520 3539 P G R 106 OK OK 3525 3540 3541 3542 3562 P G R 107 OK OK 3547 3563 3564 3565 3585 P C R 108 OK OK 3570 3586 3587 3588 3605 P G R 109 OK OK 3593 3606 3607 3608 3628 P G R 110 OK OK 3613 3629 3630 3631 3651 P U R 111 OK OK 3636 3652 3653 3654 3671 P G R 112 OK OK 3659 3672 3673 3674 3694 P G R 113 OK OK 3679 3695 3696 3697 3717 P A R 114 OK OK 3702 3718 3719 3720 3739 P G R 115 OK OK 3725 3740 3741 3742 3762 P G R 116 OK OK 3747 3763 3764 3765 3785 P G R 117 OK OK 3770 3786 3787 3788 3808 P U R 118 OK OK 3793 3809 3810 3811 3828 P U R 119 OK OK 3816 3829 3830 3831 3848 P C R 120 OK OK 3836 3849 3850 3851 3868 P C R 121 OK OK 3856 3869 3870 3871 3888 P C R 122 OK OK 3876 3889 3890 3891 3908 P A R 123 OK OK 3896 3909 3910 3911 3930 P C R 124 OK OK 3916 3931 3932 3933 3950 P C R 125 OK OK 3938 3951 3952 3953 3970 P C R 126 OK OK 3958 3971 3972 3973 3990 P U R 127 OK OK 3978 3991 3992 3993 4010 P C R 128 OK OK 3998 4011 4012 4013 4030 P G R 129 OK OK 4018 4031 4032 4033 4053 P G R 130 OK OK 4038 4054 4055 4056 4076 P G R 131 OK OK 4061 4077 4078 4079 4099 P C R 132 OK OK 4084 4100 4101 4102 4119 P G R 133 OK OK 4107 4120 4121 4122 4142 P U R 134 OK OK 4127 4143 4144 4145 4162 P G R 135 OK OK 4150 4163 4164 4165 4185 P C R 136 OK OK 4170 4186 4187 4188 4205 P C R 137 OK OK 4193 4206 4207 4208 4225 P U R 138 OK OK 4213 4226 4227 4228 4248 P CCC R 139 distorted distorted 4233 4249 4250 4251 ---------------------------------------------------------------------------------