ID code: '4QJD' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 12 C1' U A 3 beta 7 13 10 32 C1' G A 4 beta 27 33 30 54 C1' U A 5 beta 50 55 53 74 C1' A A 6 beta 69 75 72 96 C1' A A 7 beta 91 97 94 118 C1' C A 8 beta 113 119 116 138 C1' U A 9 beta 133 139 136 158 C1' C A 10 beta 153 159 156 178 C1' C A 11 beta 173 179 176 198 C1' G A 12 beta 193 199 196 221 C1' C A 13 beta 216 222 219 241 C1' C A 14 beta 236 242 239 261 C1' U A 15 beta 256 262 259 281 C1' A A 16 beta 276 282 279 303 C1' U A 17 beta 298 304 301 323 C1' G A 18 beta 318 324 321 346 C1' U A 19 beta 341 347 344 366 C1' C A 20 beta 361 367 364 386 C1' A A 21 beta 381 387 384 408 C1' U A 22 beta 403 409 406 428 C1' C A 23 beta 423 429 426 448 C1' U A 24 beta 443 449 446 468 C1' U A 25 beta 463 469 466 488 C1' A A 26 beta 483 489 486 511 C1' GTP B 27 beta 506 512 509 534 C1' U B 28 beta 529 535 532 554 C1' A B 29 beta 549 555 552 576 C1' A B 30 beta 571 577 574 598 C1' A B 31 beta 593 599 596 620 C1' U B 32 beta 615 621 618 640 C1' G B 33 beta 635 641 638 663 C1' A B 34 beta 658 664 661 685 C1' U B 35 beta 680 686 683 705 C1' A B 36 beta 700 706 703 727 C1' U B 37 beta 722 728 725 747 C1' A B 38 beta 742 748 745 769 C1' G B 39 beta 764 770 767 792 C1' C B 40 beta 787 793 790 812 C1' C B 41 beta 807 813 810 832 C1' G B 42 beta 827 833 830 855 C1' G B 43 beta 850 856 853 878 C1' U B 44 beta 873 879 876 898 C1' C B 45 beta 893 899 896 918 C1' C B 46 beta 913 919 916 938 C1' C B 47 beta 933 939 936 958 C1' A B 48 beta 953 959 956 980 C1' A B 49 beta 975 981 978 1002 C1' G B 50 beta 997 1003 1000 1025 C1' C B 51 beta 1020 1026 1023 1045 C1' C B 52 beta 1040 1046 1043 1065 C1' C B 53 beta 1060 1066 1063 1085 C1' G B 54 beta 1080 1086 1083 1108 C1' G B 55 beta 1103 1109 1106 1131 C1' A B 56 beta 1126 1132 1129 1153 C1' A B 57 beta 1148 1154 1151 1175 C1' A B 58 beta 1170 1176 1173 1197 C1' A B 59 beta 1192 1198 1195 1219 C1' A B 60 beta 1214 1220 1217 1241 C1' G B 61 beta 1236 1242 1239 1264 C1' G B 62 beta 1259 1265 1262 1287 C1' A B 63 beta 1282 1288 1285 1309 C1' G B 64 beta 1304 1310 1307 1332 C1' G B 65 beta 1327 1333 1330 1355 C1' A B 66 beta 1350 1356 1353 1377 C1' G B 67 beta 1372 1378 1375 1400 C1' G B 68 beta 1395 1401 1398 1423 C1' G B 69 beta 1418 1424 1421 1446 C1' U B 70 beta 1441 1447 1444 1466 C1' A B 71 beta 1461 1467 1464 1488 C1' U B 72 beta 1483 1489 1486 1508 C1' A B 73 beta 1503 1509 1506 1531 C1' U C 1 beta 1526 1532 1529 1551 C1' A C 2 beta 1546 1552 1549 1573 C1' U C 3 beta 1568 1574 1571 1593 C1' G C 4 beta 1588 1594 1591 1615 C1' U C 5 beta 1611 1616 1614 1635 C1' A C 6 beta 1630 1636 1633 1657 C1' A C 7 beta 1652 1658 1655 1679 C1' C C 8 beta 1674 1680 1677 1699 C1' U C 9 beta 1694 1700 1697 1719 C1' C C 10 beta 1714 1720 1717 1739 C1' C C 11 beta 1734 1740 1737 1759 C1' G C 12 beta 1754 1760 1757 1782 C1' C C 13 beta 1777 1783 1780 1802 C1' C C 14 beta 1797 1803 1800 1822 C1' U C 15 beta 1817 1823 1820 1842 C1' A C 16 beta 1837 1843 1840 1864 C1' U C 17 beta 1859 1865 1862 1884 C1' G C 18 beta 1879 1885 1882 1907 C1' U C 19 beta 1902 1908 1905 1927 C1' C C 20 beta 1922 1928 1925 1947 C1' A C 21 beta 1942 1948 1945 1969 C1' U C 22 beta 1964 1970 1967 1989 C1' C C 23 beta 1984 1990 1987 2009 C1' U C 24 beta 2004 2010 2007 2029 C1' U C 25 beta 2024 2030 2027 2059 C1' GTP D 27 beta 2054 2060 2057 2082 C1' U D 28 beta 2077 2083 2080 2102 C1' A D 29 beta 2097 2103 2100 2124 C1' A D 30 beta 2119 2125 2122 2146 C1' A D 31 beta 2141 2147 2144 2168 C1' U D 32 beta 2163 2169 2166 2188 C1' G D 33 beta 2183 2189 2186 2211 C1' A D 34 beta 2206 2212 2209 2233 C1' U D 35 beta 2228 2234 2231 2253 C1' A D 36 beta 2248 2254 2251 2275 C1' U D 37 beta 2270 2276 2273 2295 C1' A D 38 beta 2290 2296 2293 2317 C1' G D 39 beta 2312 2318 2315 2340 C1' C D 40 beta 2335 2341 2338 2360 C1' C D 41 beta 2355 2361 2358 2380 C1' G D 42 beta 2375 2381 2378 2403 C1' G D 43 beta 2398 2404 2401 2426 C1' U D 44 beta 2421 2427 2424 2446 C1' C D 45 beta 2441 2447 2444 2466 C1' C D 46 beta 2461 2467 2464 2486 C1' C D 47 beta 2481 2487 2484 2506 C1' A D 48 beta 2501 2507 2504 2528 C1' A D 49 beta 2523 2529 2526 2550 C1' G D 50 beta 2545 2551 2548 2573 C1' C D 51 beta 2568 2574 2571 2593 C1' C D 52 beta 2588 2594 2591 2613 C1' C D 53 beta 2608 2614 2611 2633 C1' G D 54 beta 2628 2634 2631 2656 C1' G D 55 beta 2651 2657 2654 2679 C1' A D 56 beta 2674 2680 2677 2701 C1' A D 57 beta 2696 2702 2699 2723 C1' A D 58 beta 2718 2724 2721 2745 C1' A D 59 beta 2740 2746 2743 2767 C1' A D 60 beta 2762 2768 2765 2789 C1' G D 61 beta 2784 2790 2787 2812 C1' G D 62 beta 2807 2813 2810 2835 C1' A D 63 beta 2830 2836 2833 2857 C1' G D 64 beta 2852 2858 2855 2880 C1' G D 65 beta 2875 2881 2878 2903 C1' A D 66 beta 2898 2904 2901 2925 C1' G D 67 beta 2920 2926 2923 2948 C1' G D 68 beta 2943 2949 2946 2971 C1' G D 69 beta 2966 2972 2969 2994 C1' U D 70 beta 2989 2995 2992 3014 C1' A D 71 beta 3009 3015 3012 3036 C1' U D 72 beta 3031 3037 3034 3056 C1' A D 73 beta 3051 3057 3054 3079 C1' U E 1 beta 3074 3080 3077 3099 C1' A E 2 beta 3094 3100 3097 3121 C1' U E 3 beta 3116 3122 3119 3141 C1' G E 4 beta 3136 3142 3139 3163 C1' U E 5 beta 3159 3164 3162 3183 C1' A E 6 beta 3178 3184 3181 3205 C1' A E 7 beta 3200 3206 3203 3227 C1' C E 8 beta 3222 3228 3225 3247 C1' U E 9 beta 3242 3248 3245 3267 C1' C E 10 beta 3262 3268 3265 3287 C1' C E 11 beta 3282 3288 3285 3307 C1' G E 12 beta 3302 3308 3305 3330 C1' C E 13 beta 3325 3331 3328 3350 C1' C E 14 beta 3345 3351 3348 3370 C1' U E 15 beta 3365 3371 3368 3390 C1' A E 16 beta 3385 3391 3388 3412 C1' U E 17 beta 3407 3413 3410 3432 C1' G E 18 beta 3427 3433 3430 3455 C1' U E 19 beta 3450 3456 3453 3475 C1' C E 20 beta 3470 3476 3473 3495 C1' A E 21 beta 3490 3496 3493 3517 C1' U E 22 beta 3512 3518 3515 3537 C1' C E 23 beta 3532 3538 3535 3557 C1' U E 24 beta 3552 3558 3555 3577 C1' U E 25 beta 3572 3578 3575 3597 C1' A E 26 beta 3592 3598 3595 3629 C1' GTP F 27 beta 3624 3630 3627 3652 C1' U F 28 beta 3647 3653 3650 3672 C1' A F 29 beta 3667 3673 3670 3694 C1' A F 30 beta 3689 3695 3692 3716 C1' A F 31 beta 3711 3717 3714 3738 C1' U F 32 beta 3733 3739 3736 3758 C1' G F 33 beta 3753 3759 3756 3781 C1' A F 34 beta 3776 3782 3779 3803 C1' U F 35 beta 3798 3804 3801 3823 C1' A F 36 beta 3818 3824 3821 3845 C1' U F 37 beta 3840 3846 3843 3865 C1' A F 38 beta 3860 3866 3863 3887 C1' G F 39 beta 3882 3888 3885 3910 C1' C F 40 beta 3905 3911 3908 3930 C1' C F 41 beta 3925 3931 3928 3950 C1' G F 42 beta 3945 3951 3948 3973 C1' G F 43 beta 3968 3974 3971 3996 C1' U F 44 beta 3991 3997 3994 4016 C1' C F 45 beta 4011 4017 4014 4036 C1' C F 46 beta 4031 4037 4034 4056 C1' C F 47 beta 4051 4057 4054 4076 C1' A F 48 beta 4071 4077 4074 4098 C1' A F 49 beta 4093 4099 4096 4120 C1' G F 50 beta 4115 4121 4118 4143 C1' C F 51 beta 4138 4144 4141 4163 C1' C F 52 beta 4158 4164 4161 4183 C1' C F 53 beta 4178 4184 4181 4203 C1' G F 54 beta 4198 4204 4201 4226 C1' G F 55 beta 4221 4227 4224 4249 C1' A F 56 beta 4244 4250 4247 4271 C1' A F 57 beta 4266 4272 4269 4293 C1' A F 58 beta 4288 4294 4291 4315 C1' A F 59 beta 4310 4316 4313 4337 C1' A F 60 beta 4332 4338 4335 4359 C1' G F 61 beta 4354 4360 4357 4382 C1' G F 62 beta 4377 4383 4380 4405 C1' A F 63 beta 4400 4406 4403 4427 C1' G F 64 beta 4422 4428 4425 4450 C1' G F 65 beta 4445 4451 4448 4473 C1' A F 66 beta 4468 4474 4471 4495 C1' G F 67 beta 4490 4496 4493 4518 C1' G F 68 beta 4513 4519 4516 4541 C1' G F 69 beta 4536 4542 4539 4564 C1' U F 70 beta 4559 4565 4562 4584 C1' A F 71 beta 4579 4585 4582 4606 C1' U F 72 beta 4601 4607 4604 4626 C1' A F 73 beta 4621 4627 4624 4649 C1' U G 1 beta 4644 4650 4647 4669 C1' A G 2 beta 4664 4670 4667 4691 C1' U G 3 beta 4686 4692 4689 4711 C1' G G 4 beta 4706 4712 4709 4733 C1' U G 5 beta 4729 4734 4732 4753 C1' A G 6 beta 4748 4754 4751 4775 C1' A G 7 beta 4770 4776 4773 4797 C1' C G 8 beta 4792 4798 4795 4817 C1' U G 9 beta 4812 4818 4815 4837 C1' C G 10 beta 4832 4838 4835 4857 C1' C G 11 beta 4852 4858 4855 4877 C1' G G 12 beta 4872 4878 4875 4900 C1' C G 13 beta 4895 4901 4898 4920 C1' C G 14 beta 4915 4921 4918 4940 C1' U G 15 beta 4935 4941 4938 4960 C1' A G 16 beta 4955 4961 4958 4982 C1' U G 17 beta 4977 4983 4980 5002 C1' G G 18 beta 4997 5003 5000 5025 C1' U G 19 beta 5020 5026 5023 5045 C1' C G 20 beta 5040 5046 5043 5065 C1' A G 21 beta 5060 5066 5063 5087 C1' U G 22 beta 5082 5088 5085 5107 C1' C G 23 beta 5102 5108 5105 5127 C1' U G 24 beta 5122 5128 5125 5147 C1' U G 25 beta 5142 5148 5145 5168 C1' GTP H 27 beta 5163 5169 5166 5191 C1' U H 28 beta 5186 5192 5189 5211 C1' A H 29 beta 5206 5212 5209 5233 C1' A H 30 beta 5228 5234 5231 5255 C1' A H 31 beta 5250 5256 5253 5277 C1' U H 32 beta 5272 5278 5275 5297 C1' G H 33 beta 5292 5298 5295 5320 C1' A H 34 beta 5315 5321 5318 5342 C1' U H 35 beta 5337 5343 5340 5362 C1' A H 36 beta 5357 5363 5360 5384 C1' U H 37 beta 5379 5385 5382 5404 C1' A H 38 beta 5399 5405 5402 5426 C1' G H 39 beta 5421 5427 5424 5449 C1' C H 40 beta 5444 5450 5447 5469 C1' C H 41 beta 5464 5470 5467 5489 C1' G H 42 beta 5484 5490 5487 5512 C1' G H 43 beta 5507 5513 5510 5535 C1' U H 44 beta 5530 5536 5533 5555 C1' C H 45 beta 5550 5556 5553 5575 C1' C H 46 beta 5570 5576 5573 5595 C1' C H 47 beta 5590 5596 5593 5615 C1' A H 48 beta 5610 5616 5613 5637 C1' A H 49 beta 5632 5638 5635 5659 C1' G H 50 beta 5654 5660 5657 5682 C1' C H 51 beta 5677 5683 5680 5702 C1' C H 52 beta 5697 5703 5700 5722 C1' C H 53 beta 5717 5723 5720 5742 C1' G H 54 beta 5737 5743 5740 5765 C1' G H 55 beta 5760 5766 5763 5788 C1' A H 56 beta 5783 5789 5786 5810 C1' A H 57 beta 5805 5811 5808 5832 C1' A H 58 beta 5827 5833 5830 5854 C1' A H 59 beta 5849 5855 5852 5876 C1' A H 60 beta 5871 5877 5874 5898 C1' G H 61 beta 5893 5899 5896 5921 C1' G H 62 beta 5916 5922 5919 5944 C1' A H 63 beta 5939 5945 5942 5966 C1' G H 64 beta 5961 5967 5964 5989 C1' G H 65 beta 5984 5990 5987 6012 C1' A H 66 beta 6007 6013 6010 6034 C1' G H 67 beta 6029 6035 6032 6057 C1' G H 68 beta 6052 6058 6055 6080 C1' G H 69 beta 6075 6081 6078 6103 C1' U H 70 beta 6098 6104 6101 6123 C1' A H 71 beta 6118 6124 6121 6145 C1' U H 72 beta 6140 6146 6143 6165 C1' A H 73 beta 6160 6166 6163 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 10 C2' U A 3 OK 12 8 11 30 C2' G A 4 OK 32 28 31 53 C2' U A 5 54 51 72 C2' A A 6 OK 74 70 73 94 C2' A A 7 OK 96 92 95 116 C2' C A 8 OK 118 114 117 136 C2' U A 9 OK 138 134 137 156 C2' C A 10 OK 158 154 157 176 C2' C A 11 OK 178 174 177 196 C2' G A 12 OK 198 194 197 219 C2' C A 13 OK 221 217 220 239 C2' C A 14 OK 241 237 240 259 C2' U A 15 OK 261 257 260 279 C2' A A 16 OK 281 277 280 301 C2' U A 17 OK 303 299 302 321 C2' G A 18 OK 323 319 322 344 C2' U A 19 OK 346 342 345 364 C2' C A 20 OK 366 362 365 384 C2' A A 21 OK 386 382 385 406 C2' U A 22 OK 408 404 407 426 C2' C A 23 OK 428 424 427 446 C2' U A 24 OK 448 444 447 466 C2' U A 25 OK 468 464 467 486 C2' A A 26 OK 488 484 487 509 C2' GTP B 27 OK 511 507 510 532 C2' U B 28 OK 534 530 533 552 C2' A B 29 OK 554 550 553 574 C2' A B 30 OK 576 572 575 596 C2' A B 31 OK 598 594 597 618 C2' U B 32 OK 620 616 619 638 C2' G B 33 OK 640 636 639 661 C2' A B 34 OK 663 659 662 683 C2' U B 35 OK 685 681 684 703 C2' A B 36 OK 705 701 704 725 C2' U B 37 OK 727 723 726 745 C2' A B 38 OK 747 743 746 767 C2' G B 39 OK 769 765 768 790 C2' C B 40 OK 792 788 791 810 C2' C B 41 OK 812 808 811 830 C2' G B 42 OK 832 828 831 853 C2' G B 43 OK 855 851 854 876 C2' U B 44 OK 878 874 877 896 C2' C B 45 OK 898 894 897 916 C2' C B 46 OK 918 914 917 936 C2' C B 47 OK 938 934 937 956 C2' A B 48 OK 958 954 957 978 C2' A B 49 OK 980 976 979 1000 C2' G B 50 OK 1002 998 1001 1023 C2' C B 51 OK 1025 1021 1024 1043 C2' C B 52 OK 1045 1041 1044 1063 C2' C B 53 OK 1065 1061 1064 1083 C2' G B 54 OK 1085 1081 1084 1106 C2' G B 55 OK 1108 1104 1107 1129 C2' A B 56 OK 1131 1127 1130 1151 C2' A B 57 OK 1153 1149 1152 1173 C2' A B 58 OK 1175 1171 1174 1195 C2' A B 59 OK 1197 1193 1196 1217 C2' A B 60 OK 1219 1215 1218 1239 C2' G B 61 OK 1241 1237 1240 1262 C2' G B 62 OK 1264 1260 1263 1285 C2' A B 63 OK 1287 1283 1286 1307 C2' G B 64 OK 1309 1305 1308 1330 C2' G B 65 OK 1332 1328 1331 1353 C2' A B 66 OK 1355 1351 1354 1375 C2' G B 67 OK 1377 1373 1376 1398 C2' G B 68 OK 1400 1396 1399 1421 C2' G B 69 OK 1423 1419 1422 1444 C2' U B 70 OK 1446 1442 1445 1464 C2' A B 71 OK 1466 1462 1465 1486 C2' U B 72 OK 1488 1484 1487 1506 C2' A B 73 OK 1508 1504 1507 1529 C2' U C 1 OK 1531 1527 1530 1549 C2' A C 2 OK 1551 1547 1550 1571 C2' U C 3 OK 1573 1569 1572 1591 C2' G C 4 OK 1593 1589 1592 1614 C2' U C 5 1615 1612 1633 C2' A C 6 OK 1635 1631 1634 1655 C2' A C 7 OK 1657 1653 1656 1677 C2' C C 8 OK 1679 1675 1678 1697 C2' U C 9 OK 1699 1695 1698 1717 C2' C C 10 OK 1719 1715 1718 1737 C2' C C 11 OK 1739 1735 1738 1757 C2' G C 12 OK 1759 1755 1758 1780 C2' C C 13 OK 1782 1778 1781 1800 C2' C C 14 OK 1802 1798 1801 1820 C2' U C 15 OK 1822 1818 1821 1840 C2' A C 16 OK 1842 1838 1841 1862 C2' U C 17 OK 1864 1860 1863 1882 C2' G C 18 OK 1884 1880 1883 1905 C2' U C 19 OK 1907 1903 1906 1925 C2' C C 20 OK 1927 1923 1926 1945 C2' A C 21 OK 1947 1943 1946 1967 C2' U C 22 OK 1969 1965 1968 1987 C2' C C 23 OK 1989 1985 1988 2007 C2' U C 24 OK 2009 2005 2008 2027 C2' U C 25 OK 2029 2025 2028 2057 C2' GTP D 27 OK 2059 2055 2058 2080 C2' U D 28 OK 2082 2078 2081 2100 C2' A D 29 OK 2102 2098 2101 2122 C2' A D 30 OK 2124 2120 2123 2144 C2' A D 31 OK 2146 2142 2145 2166 C2' U D 32 OK 2168 2164 2167 2186 C2' G D 33 OK 2188 2184 2187 2209 C2' A D 34 OK 2211 2207 2210 2231 C2' U D 35 OK 2233 2229 2232 2251 C2' A D 36 OK 2253 2249 2252 2273 C2' U D 37 OK 2275 2271 2274 2293 C2' A D 38 OK 2295 2291 2294 2315 C2' G D 39 OK 2317 2313 2316 2338 C2' C D 40 OK 2340 2336 2339 2358 C2' C D 41 OK 2360 2356 2359 2378 C2' G D 42 OK 2380 2376 2379 2401 C2' G D 43 OK 2403 2399 2402 2424 C2' U D 44 OK 2426 2422 2425 2444 C2' C D 45 OK 2446 2442 2445 2464 C2' C D 46 OK 2466 2462 2465 2484 C2' C D 47 OK 2486 2482 2485 2504 C2' A D 48 OK 2506 2502 2505 2526 C2' A D 49 OK 2528 2524 2527 2548 C2' G D 50 OK 2550 2546 2549 2571 C2' C D 51 OK 2573 2569 2572 2591 C2' C D 52 OK 2593 2589 2592 2611 C2' C D 53 OK 2613 2609 2612 2631 C2' G D 54 OK 2633 2629 2632 2654 C2' G D 55 OK 2656 2652 2655 2677 C2' A D 56 OK 2679 2675 2678 2699 C2' A D 57 OK 2701 2697 2700 2721 C2' A D 58 OK 2723 2719 2722 2743 C2' A D 59 OK 2745 2741 2744 2765 C2' A D 60 OK 2767 2763 2766 2787 C2' G D 61 OK 2789 2785 2788 2810 C2' G D 62 OK 2812 2808 2811 2833 C2' A D 63 OK 2835 2831 2834 2855 C2' G D 64 OK 2857 2853 2856 2878 C2' G D 65 OK 2880 2876 2879 2901 C2' A D 66 OK 2903 2899 2902 2923 C2' G D 67 OK 2925 2921 2924 2946 C2' G D 68 OK 2948 2944 2947 2969 C2' G D 69 OK 2971 2967 2970 2992 C2' U D 70 OK 2994 2990 2993 3012 C2' A D 71 OK 3014 3010 3013 3034 C2' U D 72 OK 3036 3032 3035 3054 C2' A D 73 OK 3056 3052 3055 3077 C2' U E 1 OK 3079 3075 3078 3097 C2' A E 2 OK 3099 3095 3098 3119 C2' U E 3 OK 3121 3117 3120 3139 C2' G E 4 OK 3141 3137 3140 3162 C2' U E 5 3163 3160 3181 C2' A E 6 OK 3183 3179 3182 3203 C2' A E 7 OK 3205 3201 3204 3225 C2' C E 8 OK 3227 3223 3226 3245 C2' U E 9 OK 3247 3243 3246 3265 C2' C E 10 OK 3267 3263 3266 3285 C2' C E 11 OK 3287 3283 3286 3305 C2' G E 12 OK 3307 3303 3306 3328 C2' C E 13 OK 3330 3326 3329 3348 C2' C E 14 OK 3350 3346 3349 3368 C2' U E 15 OK 3370 3366 3369 3388 C2' A E 16 OK 3390 3386 3389 3410 C2' U E 17 OK 3412 3408 3411 3430 C2' G E 18 OK 3432 3428 3431 3453 C2' U E 19 OK 3455 3451 3454 3473 C2' C E 20 OK 3475 3471 3474 3493 C2' A E 21 OK 3495 3491 3494 3515 C2' U E 22 OK 3517 3513 3516 3535 C2' C E 23 OK 3537 3533 3536 3555 C2' U E 24 OK 3557 3553 3556 3575 C2' U E 25 OK 3577 3573 3576 3595 C2' A E 26 OK 3597 3593 3596 3627 C2' GTP F 27 OK 3629 3625 3628 3650 C2' U F 28 OK 3652 3648 3651 3670 C2' A F 29 OK 3672 3668 3671 3692 C2' A F 30 OK 3694 3690 3693 3714 C2' A F 31 OK 3716 3712 3715 3736 C2' U F 32 OK 3738 3734 3737 3756 C2' G F 33 OK 3758 3754 3757 3779 C2' A F 34 OK 3781 3777 3780 3801 C2' U F 35 OK 3803 3799 3802 3821 C2' A F 36 OK 3823 3819 3822 3843 C2' U F 37 OK 3845 3841 3844 3863 C2' A F 38 OK 3865 3861 3864 3885 C2' G F 39 OK 3887 3883 3886 3908 C2' C F 40 OK 3910 3906 3909 3928 C2' C F 41 OK 3930 3926 3929 3948 C2' G F 42 OK 3950 3946 3949 3971 C2' G F 43 OK 3973 3969 3972 3994 C2' U F 44 OK 3996 3992 3995 4014 C2' C F 45 OK 4016 4012 4015 4034 C2' C F 46 OK 4036 4032 4035 4054 C2' C F 47 OK 4056 4052 4055 4074 C2' A F 48 OK 4076 4072 4075 4096 C2' A F 49 OK 4098 4094 4097 4118 C2' G F 50 OK 4120 4116 4119 4141 C2' C F 51 OK 4143 4139 4142 4161 C2' C F 52 OK 4163 4159 4162 4181 C2' C F 53 OK 4183 4179 4182 4201 C2' G F 54 OK 4203 4199 4202 4224 C2' G F 55 OK 4226 4222 4225 4247 C2' A F 56 OK 4249 4245 4248 4269 C2' A F 57 OK 4271 4267 4270 4291 C2' A F 58 OK 4293 4289 4292 4313 C2' A F 59 OK 4315 4311 4314 4335 C2' A F 60 OK 4337 4333 4336 4357 C2' G F 61 OK 4359 4355 4358 4380 C2' G F 62 OK 4382 4378 4381 4403 C2' A F 63 OK 4405 4401 4404 4425 C2' G F 64 OK 4427 4423 4426 4448 C2' G F 65 OK 4450 4446 4449 4471 C2' A F 66 OK 4473 4469 4472 4493 C2' G F 67 OK 4495 4491 4494 4516 C2' G F 68 OK 4518 4514 4517 4539 C2' G F 69 OK 4541 4537 4540 4562 C2' U F 70 OK 4564 4560 4563 4582 C2' A F 71 OK 4584 4580 4583 4604 C2' U F 72 OK 4606 4602 4605 4624 C2' A F 73 OK 4626 4622 4625 4647 C2' U G 1 OK 4649 4645 4648 4667 C2' A G 2 OK 4669 4665 4668 4689 C2' U G 3 OK 4691 4687 4690 4709 C2' G G 4 OK 4711 4707 4710 4732 C2' U G 5 4733 4730 4751 C2' A G 6 OK 4753 4749 4752 4773 C2' A G 7 OK 4775 4771 4774 4795 C2' C G 8 OK 4797 4793 4796 4815 C2' U G 9 OK 4817 4813 4816 4835 C2' C G 10 OK 4837 4833 4836 4855 C2' C G 11 OK 4857 4853 4856 4875 C2' G G 12 OK 4877 4873 4876 4898 C2' C G 13 OK 4900 4896 4899 4918 C2' C G 14 OK 4920 4916 4919 4938 C2' U G 15 OK 4940 4936 4939 4958 C2' A G 16 OK 4960 4956 4959 4980 C2' U G 17 OK 4982 4978 4981 5000 C2' G G 18 OK 5002 4998 5001 5023 C2' U G 19 OK 5025 5021 5024 5043 C2' C G 20 OK 5045 5041 5044 5063 C2' A G 21 OK 5065 5061 5064 5085 C2' U G 22 OK 5087 5083 5086 5105 C2' C G 23 OK 5107 5103 5106 5125 C2' U G 24 OK 5127 5123 5126 5145 C2' U G 25 OK 5147 5143 5146 5166 C2' GTP H 27 OK 5168 5164 5167 5189 C2' U H 28 OK 5191 5187 5190 5209 C2' A H 29 OK 5211 5207 5210 5231 C2' A H 30 OK 5233 5229 5232 5253 C2' A H 31 OK 5255 5251 5254 5275 C2' U H 32 OK 5277 5273 5276 5295 C2' G H 33 OK 5297 5293 5296 5318 C2' A H 34 OK 5320 5316 5319 5340 C2' U H 35 OK 5342 5338 5341 5360 C2' A H 36 OK 5362 5358 5361 5382 C2' U H 37 OK 5384 5380 5383 5402 C2' A H 38 OK 5404 5400 5403 5424 C2' G H 39 OK 5426 5422 5425 5447 C2' C H 40 OK 5449 5445 5448 5467 C2' C H 41 OK 5469 5465 5468 5487 C2' G H 42 OK 5489 5485 5488 5510 C2' G H 43 OK 5512 5508 5511 5533 C2' U H 44 OK 5535 5531 5534 5553 C2' C H 45 OK 5555 5551 5554 5573 C2' C H 46 OK 5575 5571 5574 5593 C2' C H 47 OK 5595 5591 5594 5613 C2' A H 48 OK 5615 5611 5614 5635 C2' A H 49 OK 5637 5633 5636 5657 C2' G H 50 OK 5659 5655 5658 5680 C2' C H 51 OK 5682 5678 5681 5700 C2' C H 52 OK 5702 5698 5701 5720 C2' C H 53 OK 5722 5718 5721 5740 C2' G H 54 OK 5742 5738 5741 5763 C2' G H 55 OK 5765 5761 5764 5786 C2' A H 56 OK 5788 5784 5787 5808 C2' A H 57 OK 5810 5806 5809 5830 C2' A H 58 OK 5832 5828 5831 5852 C2' A H 59 OK 5854 5850 5853 5874 C2' A H 60 OK 5876 5872 5875 5896 C2' G H 61 OK 5898 5894 5897 5919 C2' G H 62 OK 5921 5917 5920 5942 C2' A H 63 OK 5944 5940 5943 5964 C2' G H 64 OK 5966 5962 5965 5987 C2' G H 65 OK 5989 5985 5988 6010 C2' A H 66 OK 6012 6008 6011 6032 C2' G H 67 OK 6034 6030 6033 6055 C2' G H 68 OK 6057 6053 6056 6078 C2' G H 69 OK 6080 6076 6079 6101 C2' U H 70 OK 6103 6099 6102 6121 C2' A H 71 OK 6123 6119 6122 6143 C2' U H 72 OK 6145 6141 6144 6163 C2' A H 73 OK 6165 6161 6164 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 8 C3' U A 3 OK 6 9 10 28 C3' G A 4 OK 26 29 30 51 C3' U A 5 OK 49 52 53 70 C3' A A 6 OK 68 71 72 92 C3' A A 7 OK 90 93 94 114 C3' C A 8 OK 112 115 116 134 C3' U A 9 OK 132 135 136 154 C3' C A 10 OK 152 155 156 174 C3' C A 11 OK 172 175 176 194 C3' G A 12 OK 192 195 196 217 C3' C A 13 OK 215 218 219 237 C3' C A 14 OK 235 238 239 257 C3' U A 15 OK 255 258 259 277 C3' A A 16 OK 275 278 279 299 C3' U A 17 OK 297 300 301 319 C3' G A 18 OK 317 320 321 342 C3' U A 19 OK 340 343 344 362 C3' C A 20 OK 360 363 364 382 C3' A A 21 OK 380 383 384 404 C3' U A 22 OK 402 405 406 424 C3' C A 23 OK 422 425 426 444 C3' U A 24 OK 442 445 446 464 C3' U A 25 OK 462 465 466 484 C3' A A 26 OK 482 485 486 507 C3' GTP B 27 OK 505 508 509 530 C3' U B 28 OK 528 531 532 550 C3' A B 29 OK 548 551 552 572 C3' A B 30 OK 570 573 574 594 C3' A B 31 OK 592 595 596 616 C3' U B 32 OK 614 617 618 636 C3' G B 33 OK 634 637 638 659 C3' A B 34 OK 657 660 661 681 C3' U B 35 OK 679 682 683 701 C3' A B 36 OK 699 702 703 723 C3' U B 37 OK 721 724 725 743 C3' A B 38 OK 741 744 745 765 C3' G B 39 OK 763 766 767 788 C3' C B 40 OK 786 789 790 808 C3' C B 41 OK 806 809 810 828 C3' G B 42 OK 826 829 830 851 C3' G B 43 OK 849 852 853 874 C3' U B 44 OK 872 875 876 894 C3' C B 45 OK 892 895 896 914 C3' C B 46 OK 912 915 916 934 C3' C B 47 OK 932 935 936 954 C3' A B 48 OK 952 955 956 976 C3' A B 49 OK 974 977 978 998 C3' G B 50 OK 996 999 1000 1021 C3' C B 51 OK 1019 1022 1023 1041 C3' C B 52 OK 1039 1042 1043 1061 C3' C B 53 OK 1059 1062 1063 1081 C3' G B 54 OK 1079 1082 1083 1104 C3' G B 55 OK 1102 1105 1106 1127 C3' A B 56 OK 1125 1128 1129 1149 C3' A B 57 OK 1147 1150 1151 1171 C3' A B 58 OK 1169 1172 1173 1193 C3' A B 59 OK 1191 1194 1195 1215 C3' A B 60 OK 1213 1216 1217 1237 C3' G B 61 OK 1235 1238 1239 1260 C3' G B 62 OK 1258 1261 1262 1283 C3' A B 63 OK 1281 1284 1285 1305 C3' G B 64 OK 1303 1306 1307 1328 C3' G B 65 OK 1326 1329 1330 1351 C3' A B 66 OK 1349 1352 1353 1373 C3' G B 67 OK 1371 1374 1375 1396 C3' G B 68 OK 1394 1397 1398 1419 C3' G B 69 OK 1417 1420 1421 1442 C3' U B 70 OK 1440 1443 1444 1462 C3' A B 71 OK 1460 1463 1464 1484 C3' U B 72 OK 1482 1485 1486 1504 C3' A B 73 OK 1502 1505 1506 1527 C3' U C 1 OK 1525 1528 1529 1547 C3' A C 2 OK 1545 1548 1549 1569 C3' U C 3 OK 1567 1570 1571 1589 C3' G C 4 OK 1587 1590 1591 1612 C3' U C 5 OK 1610 1613 1614 1631 C3' A C 6 OK 1629 1632 1633 1653 C3' A C 7 OK 1651 1654 1655 1675 C3' C C 8 OK 1673 1676 1677 1695 C3' U C 9 OK 1693 1696 1697 1715 C3' C C 10 OK 1713 1716 1717 1735 C3' C C 11 OK 1733 1736 1737 1755 C3' G C 12 OK 1753 1756 1757 1778 C3' C C 13 OK 1776 1779 1780 1798 C3' C C 14 OK 1796 1799 1800 1818 C3' U C 15 OK 1816 1819 1820 1838 C3' A C 16 OK 1836 1839 1840 1860 C3' U C 17 OK 1858 1861 1862 1880 C3' G C 18 OK 1878 1881 1882 1903 C3' U C 19 OK 1901 1904 1905 1923 C3' C C 20 OK 1921 1924 1925 1943 C3' A C 21 OK 1941 1944 1945 1965 C3' U C 22 OK 1963 1966 1967 1985 C3' C C 23 OK 1983 1986 1987 2005 C3' U C 24 OK 2003 2006 2007 2025 C3' U C 25 OK 2023 2026 2027 2055 C3' GTP D 27 OK 2053 2056 2057 2078 C3' U D 28 OK 2076 2079 2080 2098 C3' A D 29 OK 2096 2099 2100 2120 C3' A D 30 OK 2118 2121 2122 2142 C3' A D 31 OK 2140 2143 2144 2164 C3' U D 32 OK 2162 2165 2166 2184 C3' G D 33 OK 2182 2185 2186 2207 C3' A D 34 OK 2205 2208 2209 2229 C3' U D 35 OK 2227 2230 2231 2249 C3' A D 36 OK 2247 2250 2251 2271 C3' U D 37 OK 2269 2272 2273 2291 C3' A D 38 OK 2289 2292 2293 2313 C3' G D 39 OK 2311 2314 2315 2336 C3' C D 40 OK 2334 2337 2338 2356 C3' C D 41 OK 2354 2357 2358 2376 C3' G D 42 OK 2374 2377 2378 2399 C3' G D 43 OK 2397 2400 2401 2422 C3' U D 44 OK 2420 2423 2424 2442 C3' C D 45 OK 2440 2443 2444 2462 C3' C D 46 OK 2460 2463 2464 2482 C3' C D 47 OK 2480 2483 2484 2502 C3' A D 48 OK 2500 2503 2504 2524 C3' A D 49 OK 2522 2525 2526 2546 C3' G D 50 OK 2544 2547 2548 2569 C3' C D 51 OK 2567 2570 2571 2589 C3' C D 52 OK 2587 2590 2591 2609 C3' C D 53 OK 2607 2610 2611 2629 C3' G D 54 OK 2627 2630 2631 2652 C3' G D 55 OK 2650 2653 2654 2675 C3' A D 56 OK 2673 2676 2677 2697 C3' A D 57 OK 2695 2698 2699 2719 C3' A D 58 OK 2717 2720 2721 2741 C3' A D 59 OK 2739 2742 2743 2763 C3' A D 60 OK 2761 2764 2765 2785 C3' G D 61 OK 2783 2786 2787 2808 C3' G D 62 OK 2806 2809 2810 2831 C3' A D 63 OK 2829 2832 2833 2853 C3' G D 64 OK 2851 2854 2855 2876 C3' G D 65 OK 2874 2877 2878 2899 C3' A D 66 OK 2897 2900 2901 2921 C3' G D 67 OK 2919 2922 2923 2944 C3' G D 68 OK 2942 2945 2946 2967 C3' G D 69 OK 2965 2968 2969 2990 C3' U D 70 OK 2988 2991 2992 3010 C3' A D 71 OK 3008 3011 3012 3032 C3' U D 72 OK 3030 3033 3034 3052 C3' A D 73 OK 3050 3053 3054 3075 C3' U E 1 OK 3073 3076 3077 3095 C3' A E 2 OK 3093 3096 3097 3117 C3' U E 3 OK 3115 3118 3119 3137 C3' G E 4 OK 3135 3138 3139 3160 C3' U E 5 OK 3158 3161 3162 3179 C3' A E 6 OK 3177 3180 3181 3201 C3' A E 7 OK 3199 3202 3203 3223 C3' C E 8 OK 3221 3224 3225 3243 C3' U E 9 OK 3241 3244 3245 3263 C3' C E 10 OK 3261 3264 3265 3283 C3' C E 11 OK 3281 3284 3285 3303 C3' G E 12 OK 3301 3304 3305 3326 C3' C E 13 OK 3324 3327 3328 3346 C3' C E 14 OK 3344 3347 3348 3366 C3' U E 15 OK 3364 3367 3368 3386 C3' A E 16 OK 3384 3387 3388 3408 C3' U E 17 OK 3406 3409 3410 3428 C3' G E 18 OK 3426 3429 3430 3451 C3' U E 19 OK 3449 3452 3453 3471 C3' C E 20 OK 3469 3472 3473 3491 C3' A E 21 OK 3489 3492 3493 3513 C3' U E 22 OK 3511 3514 3515 3533 C3' C E 23 OK 3531 3534 3535 3553 C3' U E 24 OK 3551 3554 3555 3573 C3' U E 25 OK 3571 3574 3575 3593 C3' A E 26 OK 3591 3594 3595 3625 C3' GTP F 27 OK 3623 3626 3627 3648 C3' U F 28 OK 3646 3649 3650 3668 C3' A F 29 OK 3666 3669 3670 3690 C3' A F 30 OK 3688 3691 3692 3712 C3' A F 31 OK 3710 3713 3714 3734 C3' U F 32 OK 3732 3735 3736 3754 C3' G F 33 OK 3752 3755 3756 3777 C3' A F 34 OK 3775 3778 3779 3799 C3' U F 35 OK 3797 3800 3801 3819 C3' A F 36 OK 3817 3820 3821 3841 C3' U F 37 OK 3839 3842 3843 3861 C3' A F 38 OK 3859 3862 3863 3883 C3' G F 39 OK 3881 3884 3885 3906 C3' C F 40 OK 3904 3907 3908 3926 C3' C F 41 OK 3924 3927 3928 3946 C3' G F 42 OK 3944 3947 3948 3969 C3' G F 43 OK 3967 3970 3971 3992 C3' U F 44 OK 3990 3993 3994 4012 C3' C F 45 OK 4010 4013 4014 4032 C3' C F 46 OK 4030 4033 4034 4052 C3' C F 47 OK 4050 4053 4054 4072 C3' A F 48 OK 4070 4073 4074 4094 C3' A F 49 OK 4092 4095 4096 4116 C3' G F 50 OK 4114 4117 4118 4139 C3' C F 51 OK 4137 4140 4141 4159 C3' C F 52 OK 4157 4160 4161 4179 C3' C F 53 OK 4177 4180 4181 4199 C3' G F 54 OK 4197 4200 4201 4222 C3' G F 55 OK 4220 4223 4224 4245 C3' A F 56 OK 4243 4246 4247 4267 C3' A F 57 OK 4265 4268 4269 4289 C3' A F 58 OK 4287 4290 4291 4311 C3' A F 59 OK 4309 4312 4313 4333 C3' A F 60 OK 4331 4334 4335 4355 C3' G F 61 OK 4353 4356 4357 4378 C3' G F 62 OK 4376 4379 4380 4401 C3' A F 63 OK 4399 4402 4403 4423 C3' G F 64 OK 4421 4424 4425 4446 C3' G F 65 OK 4444 4447 4448 4469 C3' A F 66 OK 4467 4470 4471 4491 C3' G F 67 OK 4489 4492 4493 4514 C3' G F 68 OK 4512 4515 4516 4537 C3' G F 69 OK 4535 4538 4539 4560 C3' U F 70 OK 4558 4561 4562 4580 C3' A F 71 OK 4578 4581 4582 4602 C3' U F 72 OK 4600 4603 4604 4622 C3' A F 73 OK 4620 4623 4624 4645 C3' U G 1 OK 4643 4646 4647 4665 C3' A G 2 OK 4663 4666 4667 4687 C3' U G 3 OK 4685 4688 4689 4707 C3' G G 4 OK 4705 4708 4709 4730 C3' U G 5 OK 4728 4731 4732 4749 C3' A G 6 OK 4747 4750 4751 4771 C3' A G 7 OK 4769 4772 4773 4793 C3' C G 8 OK 4791 4794 4795 4813 C3' U G 9 OK 4811 4814 4815 4833 C3' C G 10 OK 4831 4834 4835 4853 C3' C G 11 OK 4851 4854 4855 4873 C3' G G 12 OK 4871 4874 4875 4896 C3' C G 13 OK 4894 4897 4898 4916 C3' C G 14 OK 4914 4917 4918 4936 C3' U G 15 OK 4934 4937 4938 4956 C3' A G 16 OK 4954 4957 4958 4978 C3' U G 17 OK 4976 4979 4980 4998 C3' G G 18 OK 4996 4999 5000 5021 C3' U G 19 OK 5019 5022 5023 5041 C3' C G 20 OK 5039 5042 5043 5061 C3' A G 21 OK 5059 5062 5063 5083 C3' U G 22 OK 5081 5084 5085 5103 C3' C G 23 OK 5101 5104 5105 5123 C3' U G 24 OK 5121 5124 5125 5143 C3' U G 25 OK 5141 5144 5145 5164 C3' GTP H 27 OK 5162 5165 5166 5187 C3' U H 28 OK 5185 5188 5189 5207 C3' A H 29 OK 5205 5208 5209 5229 C3' A H 30 OK 5227 5230 5231 5251 C3' A H 31 OK 5249 5252 5253 5273 C3' U H 32 OK 5271 5274 5275 5293 C3' G H 33 OK 5291 5294 5295 5316 C3' A H 34 OK 5314 5317 5318 5338 C3' U H 35 OK 5336 5339 5340 5358 C3' A H 36 OK 5356 5359 5360 5380 C3' U H 37 OK 5378 5381 5382 5400 C3' A H 38 OK 5398 5401 5402 5422 C3' G H 39 OK 5420 5423 5424 5445 C3' C H 40 OK 5443 5446 5447 5465 C3' C H 41 OK 5463 5466 5467 5485 C3' G H 42 OK 5483 5486 5487 5508 C3' G H 43 OK 5506 5509 5510 5531 C3' U H 44 OK 5529 5532 5533 5551 C3' C H 45 OK 5549 5552 5553 5571 C3' C H 46 OK 5569 5572 5573 5591 C3' C H 47 OK 5589 5592 5593 5611 C3' A H 48 OK 5609 5612 5613 5633 C3' A H 49 OK 5631 5634 5635 5655 C3' G H 50 OK 5653 5656 5657 5678 C3' C H 51 OK 5676 5679 5680 5698 C3' C H 52 OK 5696 5699 5700 5718 C3' C H 53 OK 5716 5719 5720 5738 C3' G H 54 OK 5736 5739 5740 5761 C3' G H 55 OK 5759 5762 5763 5784 C3' A H 56 OK 5782 5785 5786 5806 C3' A H 57 OK 5804 5807 5808 5828 C3' A H 58 OK 5826 5829 5830 5850 C3' A H 59 OK 5848 5851 5852 5872 C3' A H 60 OK 5870 5873 5874 5894 C3' G H 61 OK 5892 5895 5896 5917 C3' G H 62 OK 5915 5918 5919 5940 C3' A H 63 OK 5938 5941 5942 5962 C3' G H 64 OK 5960 5963 5964 5985 C3' G H 65 OK 5983 5986 5987 6008 C3' A H 66 OK 6006 6009 6010 6030 C3' G H 67 OK 6028 6031 6032 6053 C3' G H 68 OK 6051 6054 6055 6076 C3' G H 69 OK 6074 6077 6078 6099 C3' U H 70 OK 6097 6100 6101 6119 C3' A H 71 OK 6117 6120 6121 6141 C3' U H 72 OK 6139 6142 6143 6161 C3' A H 73 OK 6159 6162 6163 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 6 C4' U A 3 OK 8 5 7 26 C4' G A 4 OK 28 25 27 49 C4' U A 5 OK 51 48 50 68 C4' A A 6 OK 70 67 69 90 C4' A A 7 OK 92 89 91 112 C4' C A 8 OK 114 111 113 132 C4' U A 9 OK 134 131 133 152 C4' C A 10 OK 154 151 153 172 C4' C A 11 OK 174 171 173 192 C4' G A 12 OK 194 191 193 215 C4' C A 13 OK 217 214 216 235 C4' C A 14 OK 237 234 236 255 C4' U A 15 OK 257 254 256 275 C4' A A 16 OK 277 274 276 297 C4' U A 17 OK 299 296 298 317 C4' G A 18 OK 319 316 318 340 C4' U A 19 OK 342 339 341 360 C4' C A 20 OK 362 359 361 380 C4' A A 21 OK 382 379 381 402 C4' U A 22 OK 404 401 403 422 C4' C A 23 OK 424 421 423 442 C4' U A 24 OK 444 441 443 462 C4' U A 25 OK 464 461 463 482 C4' A A 26 OK 484 481 483 505 C4' GTP B 27 OK 507 504 506 528 C4' U B 28 OK 530 527 529 548 C4' A B 29 OK 550 547 549 570 C4' A B 30 OK 572 569 571 592 C4' A B 31 OK 594 591 593 614 C4' U B 32 OK 616 613 615 634 C4' G B 33 OK 636 633 635 657 C4' A B 34 OK 659 656 658 679 C4' U B 35 OK 681 678 680 699 C4' A B 36 OK 701 698 700 721 C4' U B 37 OK 723 720 722 741 C4' A B 38 OK 743 740 742 763 C4' G B 39 OK 765 762 764 786 C4' C B 40 OK 788 785 787 806 C4' C B 41 OK 808 805 807 826 C4' G B 42 OK 828 825 827 849 C4' G B 43 OK 851 848 850 872 C4' U B 44 OK 874 871 873 892 C4' C B 45 OK 894 891 893 912 C4' C B 46 OK 914 911 913 932 C4' C B 47 OK 934 931 933 952 C4' A B 48 OK 954 951 953 974 C4' A B 49 OK 976 973 975 996 C4' G B 50 OK 998 995 997 1019 C4' C B 51 OK 1021 1018 1020 1039 C4' C B 52 OK 1041 1038 1040 1059 C4' C B 53 OK 1061 1058 1060 1079 C4' G B 54 OK 1081 1078 1080 1102 C4' G B 55 OK 1104 1101 1103 1125 C4' A B 56 OK 1127 1124 1126 1147 C4' A B 57 OK 1149 1146 1148 1169 C4' A B 58 OK 1171 1168 1170 1191 C4' A B 59 OK 1193 1190 1192 1213 C4' A B 60 OK 1215 1212 1214 1235 C4' G B 61 OK 1237 1234 1236 1258 C4' G B 62 OK 1260 1257 1259 1281 C4' A B 63 OK 1283 1280 1282 1303 C4' G B 64 OK 1305 1302 1304 1326 C4' G B 65 OK 1328 1325 1327 1349 C4' A B 66 OK 1351 1348 1350 1371 C4' G B 67 OK 1373 1370 1372 1394 C4' G B 68 OK 1396 1393 1395 1417 C4' G B 69 OK 1419 1416 1418 1440 C4' U B 70 OK 1442 1439 1441 1460 C4' A B 71 OK 1462 1459 1461 1482 C4' U B 72 OK 1484 1481 1483 1502 C4' A B 73 OK 1504 1501 1503 1525 C4' U C 1 OK 1527 1524 1526 1545 C4' A C 2 OK 1547 1544 1546 1567 C4' U C 3 OK 1569 1566 1568 1587 C4' G C 4 OK 1589 1586 1588 1610 C4' U C 5 OK 1612 1609 1611 1629 C4' A C 6 OK 1631 1628 1630 1651 C4' A C 7 OK 1653 1650 1652 1673 C4' C C 8 OK 1675 1672 1674 1693 C4' U C 9 OK 1695 1692 1694 1713 C4' C C 10 OK 1715 1712 1714 1733 C4' C C 11 OK 1735 1732 1734 1753 C4' G C 12 OK 1755 1752 1754 1776 C4' C C 13 OK 1778 1775 1777 1796 C4' C C 14 OK 1798 1795 1797 1816 C4' U C 15 OK 1818 1815 1817 1836 C4' A C 16 OK 1838 1835 1837 1858 C4' U C 17 OK 1860 1857 1859 1878 C4' G C 18 OK 1880 1877 1879 1901 C4' U C 19 OK 1903 1900 1902 1921 C4' C C 20 OK 1923 1920 1922 1941 C4' A C 21 OK 1943 1940 1942 1963 C4' U C 22 OK 1965 1962 1964 1983 C4' C C 23 OK 1985 1982 1984 2003 C4' U C 24 OK 2005 2002 2004 2023 C4' U C 25 OK 2025 2022 2024 2053 C4' GTP D 27 OK 2055 2052 2054 2076 C4' U D 28 OK 2078 2075 2077 2096 C4' A D 29 OK 2098 2095 2097 2118 C4' A D 30 OK 2120 2117 2119 2140 C4' A D 31 OK 2142 2139 2141 2162 C4' U D 32 OK 2164 2161 2163 2182 C4' G D 33 OK 2184 2181 2183 2205 C4' A D 34 OK 2207 2204 2206 2227 C4' U D 35 OK 2229 2226 2228 2247 C4' A D 36 OK 2249 2246 2248 2269 C4' U D 37 OK 2271 2268 2270 2289 C4' A D 38 OK 2291 2288 2290 2311 C4' G D 39 OK 2313 2310 2312 2334 C4' C D 40 OK 2336 2333 2335 2354 C4' C D 41 OK 2356 2353 2355 2374 C4' G D 42 OK 2376 2373 2375 2397 C4' G D 43 OK 2399 2396 2398 2420 C4' U D 44 OK 2422 2419 2421 2440 C4' C D 45 OK 2442 2439 2441 2460 C4' C D 46 OK 2462 2459 2461 2480 C4' C D 47 OK 2482 2479 2481 2500 C4' A D 48 OK 2502 2499 2501 2522 C4' A D 49 OK 2524 2521 2523 2544 C4' G D 50 OK 2546 2543 2545 2567 C4' C D 51 OK 2569 2566 2568 2587 C4' C D 52 OK 2589 2586 2588 2607 C4' C D 53 OK 2609 2606 2608 2627 C4' G D 54 OK 2629 2626 2628 2650 C4' G D 55 OK 2652 2649 2651 2673 C4' A D 56 OK 2675 2672 2674 2695 C4' A D 57 OK 2697 2694 2696 2717 C4' A D 58 OK 2719 2716 2718 2739 C4' A D 59 OK 2741 2738 2740 2761 C4' A D 60 OK 2763 2760 2762 2783 C4' G D 61 OK 2785 2782 2784 2806 C4' G D 62 OK 2808 2805 2807 2829 C4' A D 63 OK 2831 2828 2830 2851 C4' G D 64 OK 2853 2850 2852 2874 C4' G D 65 OK 2876 2873 2875 2897 C4' A D 66 OK 2899 2896 2898 2919 C4' G D 67 OK 2921 2918 2920 2942 C4' G D 68 OK 2944 2941 2943 2965 C4' G D 69 OK 2967 2964 2966 2988 C4' U D 70 OK 2990 2987 2989 3008 C4' A D 71 OK 3010 3007 3009 3030 C4' U D 72 OK 3032 3029 3031 3050 C4' A D 73 OK 3052 3049 3051 3073 C4' U E 1 OK 3075 3072 3074 3093 C4' A E 2 OK 3095 3092 3094 3115 C4' U E 3 OK 3117 3114 3116 3135 C4' G E 4 OK 3137 3134 3136 3158 C4' U E 5 OK 3160 3157 3159 3177 C4' A E 6 OK 3179 3176 3178 3199 C4' A E 7 OK 3201 3198 3200 3221 C4' C E 8 OK 3223 3220 3222 3241 C4' U E 9 OK 3243 3240 3242 3261 C4' C E 10 OK 3263 3260 3262 3281 C4' C E 11 OK 3283 3280 3282 3301 C4' G E 12 OK 3303 3300 3302 3324 C4' C E 13 OK 3326 3323 3325 3344 C4' C E 14 OK 3346 3343 3345 3364 C4' U E 15 OK 3366 3363 3365 3384 C4' A E 16 OK 3386 3383 3385 3406 C4' U E 17 OK 3408 3405 3407 3426 C4' G E 18 OK 3428 3425 3427 3449 C4' U E 19 OK 3451 3448 3450 3469 C4' C E 20 OK 3471 3468 3470 3489 C4' A E 21 OK 3491 3488 3490 3511 C4' U E 22 OK 3513 3510 3512 3531 C4' C E 23 OK 3533 3530 3532 3551 C4' U E 24 OK 3553 3550 3552 3571 C4' U E 25 OK 3573 3570 3572 3591 C4' A E 26 OK 3593 3590 3592 3623 C4' GTP F 27 OK 3625 3622 3624 3646 C4' U F 28 OK 3648 3645 3647 3666 C4' A F 29 OK 3668 3665 3667 3688 C4' A F 30 OK 3690 3687 3689 3710 C4' A F 31 OK 3712 3709 3711 3732 C4' U F 32 OK 3734 3731 3733 3752 C4' G F 33 OK 3754 3751 3753 3775 C4' A F 34 OK 3777 3774 3776 3797 C4' U F 35 OK 3799 3796 3798 3817 C4' A F 36 OK 3819 3816 3818 3839 C4' U F 37 OK 3841 3838 3840 3859 C4' A F 38 OK 3861 3858 3860 3881 C4' G F 39 OK 3883 3880 3882 3904 C4' C F 40 OK 3906 3903 3905 3924 C4' C F 41 OK 3926 3923 3925 3944 C4' G F 42 OK 3946 3943 3945 3967 C4' G F 43 OK 3969 3966 3968 3990 C4' U F 44 OK 3992 3989 3991 4010 C4' C F 45 OK 4012 4009 4011 4030 C4' C F 46 OK 4032 4029 4031 4050 C4' C F 47 OK 4052 4049 4051 4070 C4' A F 48 OK 4072 4069 4071 4092 C4' A F 49 OK 4094 4091 4093 4114 C4' G F 50 OK 4116 4113 4115 4137 C4' C F 51 OK 4139 4136 4138 4157 C4' C F 52 OK 4159 4156 4158 4177 C4' C F 53 OK 4179 4176 4178 4197 C4' G F 54 OK 4199 4196 4198 4220 C4' G F 55 OK 4222 4219 4221 4243 C4' A F 56 OK 4245 4242 4244 4265 C4' A F 57 OK 4267 4264 4266 4287 C4' A F 58 OK 4289 4286 4288 4309 C4' A F 59 OK 4311 4308 4310 4331 C4' A F 60 OK 4333 4330 4332 4353 C4' G F 61 OK 4355 4352 4354 4376 C4' G F 62 OK 4378 4375 4377 4399 C4' A F 63 OK 4401 4398 4400 4421 C4' G F 64 OK 4423 4420 4422 4444 C4' G F 65 OK 4446 4443 4445 4467 C4' A F 66 OK 4469 4466 4468 4489 C4' G F 67 OK 4491 4488 4490 4512 C4' G F 68 OK 4514 4511 4513 4535 C4' G F 69 OK 4537 4534 4536 4558 C4' U F 70 OK 4560 4557 4559 4578 C4' A F 71 OK 4580 4577 4579 4600 C4' U F 72 OK 4602 4599 4601 4620 C4' A F 73 OK 4622 4619 4621 4643 C4' U G 1 OK 4645 4642 4644 4663 C4' A G 2 OK 4665 4662 4664 4685 C4' U G 3 OK 4687 4684 4686 4705 C4' G G 4 OK 4707 4704 4706 4728 C4' U G 5 OK 4730 4727 4729 4747 C4' A G 6 OK 4749 4746 4748 4769 C4' A G 7 OK 4771 4768 4770 4791 C4' C G 8 OK 4793 4790 4792 4811 C4' U G 9 OK 4813 4810 4812 4831 C4' C G 10 OK 4833 4830 4832 4851 C4' C G 11 OK 4853 4850 4852 4871 C4' G G 12 OK 4873 4870 4872 4894 C4' C G 13 OK 4896 4893 4895 4914 C4' C G 14 OK 4916 4913 4915 4934 C4' U G 15 OK 4936 4933 4935 4954 C4' A G 16 OK 4956 4953 4955 4976 C4' U G 17 OK 4978 4975 4977 4996 C4' G G 18 OK 4998 4995 4997 5019 C4' U G 19 OK 5021 5018 5020 5039 C4' C G 20 OK 5041 5038 5040 5059 C4' A G 21 OK 5061 5058 5060 5081 C4' U G 22 OK 5083 5080 5082 5101 C4' C G 23 OK 5103 5100 5102 5121 C4' U G 24 OK 5123 5120 5122 5141 C4' U G 25 OK 5143 5140 5142 5162 C4' GTP H 27 OK 5164 5161 5163 5185 C4' U H 28 OK 5187 5184 5186 5205 C4' A H 29 OK 5207 5204 5206 5227 C4' A H 30 OK 5229 5226 5228 5249 C4' A H 31 OK 5251 5248 5250 5271 C4' U H 32 OK 5273 5270 5272 5291 C4' G H 33 OK 5293 5290 5292 5314 C4' A H 34 OK 5316 5313 5315 5336 C4' U H 35 OK 5338 5335 5337 5356 C4' A H 36 OK 5358 5355 5357 5378 C4' U H 37 OK 5380 5377 5379 5398 C4' A H 38 OK 5400 5397 5399 5420 C4' G H 39 OK 5422 5419 5421 5443 C4' C H 40 OK 5445 5442 5444 5463 C4' C H 41 OK 5465 5462 5464 5483 C4' G H 42 OK 5485 5482 5484 5506 C4' G H 43 OK 5508 5505 5507 5529 C4' U H 44 OK 5531 5528 5530 5549 C4' C H 45 OK 5551 5548 5550 5569 C4' C H 46 OK 5571 5568 5570 5589 C4' C H 47 OK 5591 5588 5590 5609 C4' A H 48 OK 5611 5608 5610 5631 C4' A H 49 OK 5633 5630 5632 5653 C4' G H 50 OK 5655 5652 5654 5676 C4' C H 51 OK 5678 5675 5677 5696 C4' C H 52 OK 5698 5695 5697 5716 C4' C H 53 OK 5718 5715 5717 5736 C4' G H 54 OK 5738 5735 5737 5759 C4' G H 55 OK 5761 5758 5760 5782 C4' A H 56 OK 5784 5781 5783 5804 C4' A H 57 OK 5806 5803 5805 5826 C4' A H 58 OK 5828 5825 5827 5848 C4' A H 59 OK 5850 5847 5849 5870 C4' A H 60 OK 5872 5869 5871 5892 C4' G H 61 OK 5894 5891 5893 5915 C4' G H 62 OK 5917 5914 5916 5938 C4' A H 63 OK 5940 5937 5939 5960 C4' G H 64 OK 5962 5959 5961 5983 C4' G H 65 OK 5985 5982 5984 6006 C4' A H 66 OK 6008 6005 6007 6028 C4' G H 67 OK 6030 6027 6029 6051 C4' G H 68 OK 6053 6050 6052 6074 C4' G H 69 OK 6076 6073 6075 6097 C4' U H 70 OK 6099 6096 6098 6117 C4' A H 71 OK 6119 6116 6118 6139 C4' U H 72 OK 6141 6138 6140 6159 C4' A H 73 OK 6161 6158 6160 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 5 C5' U A 3 4 6 25 C5' G A 4 24 26 48 C5' U A 5 47 49 67 C5' A A 6 66 68 89 C5' A A 7 88 90 111 C5' C A 8 110 112 131 C5' U A 9 130 132 151 C5' C A 10 150 152 171 C5' C A 11 170 172 191 C5' G A 12 190 192 214 C5' C A 13 213 215 234 C5' C A 14 233 235 254 C5' U A 15 253 255 274 C5' A A 16 273 275 296 C5' U A 17 295 297 316 C5' G A 18 315 317 339 C5' U A 19 338 340 359 C5' C A 20 358 360 379 C5' A A 21 378 380 401 C5' U A 22 400 402 421 C5' C A 23 420 422 441 C5' U A 24 440 442 461 C5' U A 25 460 462 481 C5' A A 26 480 482 504 C5' GTP B 27 503 505 527 C5' U B 28 526 528 547 C5' A B 29 546 548 569 C5' A B 30 568 570 591 C5' A B 31 590 592 613 C5' U B 32 612 614 633 C5' G B 33 632 634 656 C5' A B 34 655 657 678 C5' U B 35 677 679 698 C5' A B 36 697 699 720 C5' U B 37 719 721 740 C5' A B 38 739 741 762 C5' G B 39 761 763 785 C5' C B 40 784 786 805 C5' C B 41 804 806 825 C5' G B 42 824 826 848 C5' G B 43 847 849 871 C5' U B 44 870 872 891 C5' C B 45 890 892 911 C5' C B 46 910 912 931 C5' C B 47 930 932 951 C5' A B 48 950 952 973 C5' A B 49 972 974 995 C5' G B 50 994 996 1018 C5' C B 51 1017 1019 1038 C5' C B 52 1037 1039 1058 C5' C B 53 1057 1059 1078 C5' G B 54 1077 1079 1101 C5' G B 55 1100 1102 1124 C5' A B 56 1123 1125 1146 C5' A B 57 1145 1147 1168 C5' A B 58 1167 1169 1190 C5' A B 59 1189 1191 1212 C5' A B 60 1211 1213 1234 C5' G B 61 1233 1235 1257 C5' G B 62 1256 1258 1280 C5' A B 63 1279 1281 1302 C5' G B 64 1301 1303 1325 C5' G B 65 1324 1326 1348 C5' A B 66 1347 1349 1370 C5' G B 67 1369 1371 1393 C5' G B 68 1392 1394 1416 C5' G B 69 1415 1417 1439 C5' U B 70 1438 1440 1459 C5' A B 71 1458 1460 1481 C5' U B 72 1480 1482 1501 C5' A B 73 1500 1502 1524 C5' U C 1 1523 1525 1544 C5' A C 2 1543 1545 1566 C5' U C 3 1565 1567 1586 C5' G C 4 1585 1587 1609 C5' U C 5 1608 1610 1628 C5' A C 6 1627 1629 1650 C5' A C 7 1649 1651 1672 C5' C C 8 1671 1673 1692 C5' U C 9 1691 1693 1712 C5' C C 10 1711 1713 1732 C5' C C 11 1731 1733 1752 C5' G C 12 1751 1753 1775 C5' C C 13 1774 1776 1795 C5' C C 14 1794 1796 1815 C5' U C 15 1814 1816 1835 C5' A C 16 1834 1836 1857 C5' U C 17 1856 1858 1877 C5' G C 18 1876 1878 1900 C5' U C 19 1899 1901 1920 C5' C C 20 1919 1921 1940 C5' A C 21 1939 1941 1962 C5' U C 22 1961 1963 1982 C5' C C 23 1981 1983 2002 C5' U C 24 2001 2003 2022 C5' U C 25 2021 2023 2052 C5' GTP D 27 2051 2053 2075 C5' U D 28 2074 2076 2095 C5' A D 29 2094 2096 2117 C5' A D 30 2116 2118 2139 C5' A D 31 2138 2140 2161 C5' U D 32 2160 2162 2181 C5' G D 33 2180 2182 2204 C5' A D 34 2203 2205 2226 C5' U D 35 2225 2227 2246 C5' A D 36 2245 2247 2268 C5' U D 37 2267 2269 2288 C5' A D 38 2287 2289 2310 C5' G D 39 2309 2311 2333 C5' C D 40 2332 2334 2353 C5' C D 41 2352 2354 2373 C5' G D 42 2372 2374 2396 C5' G D 43 2395 2397 2419 C5' U D 44 2418 2420 2439 C5' C D 45 2438 2440 2459 C5' C D 46 2458 2460 2479 C5' C D 47 2478 2480 2499 C5' A D 48 2498 2500 2521 C5' A D 49 2520 2522 2543 C5' G D 50 2542 2544 2566 C5' C D 51 2565 2567 2586 C5' C D 52 2585 2587 2606 C5' C D 53 2605 2607 2626 C5' G D 54 2625 2627 2649 C5' G D 55 2648 2650 2672 C5' A D 56 2671 2673 2694 C5' A D 57 2693 2695 2716 C5' A D 58 2715 2717 2738 C5' A D 59 2737 2739 2760 C5' A D 60 2759 2761 2782 C5' G D 61 2781 2783 2805 C5' G D 62 2804 2806 2828 C5' A D 63 2827 2829 2850 C5' G D 64 2849 2851 2873 C5' G D 65 2872 2874 2896 C5' A D 66 2895 2897 2918 C5' G D 67 2917 2919 2941 C5' G D 68 2940 2942 2964 C5' G D 69 2963 2965 2987 C5' U D 70 2986 2988 3007 C5' A D 71 3006 3008 3029 C5' U D 72 3028 3030 3049 C5' A D 73 3048 3050 3072 C5' U E 1 3071 3073 3092 C5' A E 2 3091 3093 3114 C5' U E 3 3113 3115 3134 C5' G E 4 3133 3135 3157 C5' U E 5 3156 3158 3176 C5' A E 6 3175 3177 3198 C5' A E 7 3197 3199 3220 C5' C E 8 3219 3221 3240 C5' U E 9 3239 3241 3260 C5' C E 10 3259 3261 3280 C5' C E 11 3279 3281 3300 C5' G E 12 3299 3301 3323 C5' C E 13 3322 3324 3343 C5' C E 14 3342 3344 3363 C5' U E 15 3362 3364 3383 C5' A E 16 3382 3384 3405 C5' U E 17 3404 3406 3425 C5' G E 18 3424 3426 3448 C5' U E 19 3447 3449 3468 C5' C E 20 3467 3469 3488 C5' A E 21 3487 3489 3510 C5' U E 22 3509 3511 3530 C5' C E 23 3529 3531 3550 C5' U E 24 3549 3551 3570 C5' U E 25 3569 3571 3590 C5' A E 26 3589 3591 3622 C5' GTP F 27 3621 3623 3645 C5' U F 28 3644 3646 3665 C5' A F 29 3664 3666 3687 C5' A F 30 3686 3688 3709 C5' A F 31 3708 3710 3731 C5' U F 32 3730 3732 3751 C5' G F 33 3750 3752 3774 C5' A F 34 3773 3775 3796 C5' U F 35 3795 3797 3816 C5' A F 36 3815 3817 3838 C5' U F 37 3837 3839 3858 C5' A F 38 3857 3859 3880 C5' G F 39 3879 3881 3903 C5' C F 40 3902 3904 3923 C5' C F 41 3922 3924 3943 C5' G F 42 3942 3944 3966 C5' G F 43 3965 3967 3989 C5' U F 44 3988 3990 4009 C5' C F 45 4008 4010 4029 C5' C F 46 4028 4030 4049 C5' C F 47 4048 4050 4069 C5' A F 48 4068 4070 4091 C5' A F 49 4090 4092 4113 C5' G F 50 4112 4114 4136 C5' C F 51 4135 4137 4156 C5' C F 52 4155 4157 4176 C5' C F 53 4175 4177 4196 C5' G F 54 4195 4197 4219 C5' G F 55 4218 4220 4242 C5' A F 56 4241 4243 4264 C5' A F 57 4263 4265 4286 C5' A F 58 4285 4287 4308 C5' A F 59 4307 4309 4330 C5' A F 60 4329 4331 4352 C5' G F 61 4351 4353 4375 C5' G F 62 4374 4376 4398 C5' A F 63 4397 4399 4420 C5' G F 64 4419 4421 4443 C5' G F 65 4442 4444 4466 C5' A F 66 4465 4467 4488 C5' G F 67 4487 4489 4511 C5' G F 68 4510 4512 4534 C5' G F 69 4533 4535 4557 C5' U F 70 4556 4558 4577 C5' A F 71 4576 4578 4599 C5' U F 72 4598 4600 4619 C5' A F 73 4618 4620 4642 C5' U G 1 4641 4643 4662 C5' A G 2 4661 4663 4684 C5' U G 3 4683 4685 4704 C5' G G 4 4703 4705 4727 C5' U G 5 4726 4728 4746 C5' A G 6 4745 4747 4768 C5' A G 7 4767 4769 4790 C5' C G 8 4789 4791 4810 C5' U G 9 4809 4811 4830 C5' C G 10 4829 4831 4850 C5' C G 11 4849 4851 4870 C5' G G 12 4869 4871 4893 C5' C G 13 4892 4894 4913 C5' C G 14 4912 4914 4933 C5' U G 15 4932 4934 4953 C5' A G 16 4952 4954 4975 C5' U G 17 4974 4976 4995 C5' G G 18 4994 4996 5018 C5' U G 19 5017 5019 5038 C5' C G 20 5037 5039 5058 C5' A G 21 5057 5059 5080 C5' U G 22 5079 5081 5100 C5' C G 23 5099 5101 5120 C5' U G 24 5119 5121 5140 C5' U G 25 5139 5141 5161 C5' GTP H 27 5160 5162 5184 C5' U H 28 5183 5185 5204 C5' A H 29 5203 5205 5226 C5' A H 30 5225 5227 5248 C5' A H 31 5247 5249 5270 C5' U H 32 5269 5271 5290 C5' G H 33 5289 5291 5313 C5' A H 34 5312 5314 5335 C5' U H 35 5334 5336 5355 C5' A H 36 5354 5356 5377 C5' U H 37 5376 5378 5397 C5' A H 38 5396 5398 5419 C5' G H 39 5418 5420 5442 C5' C H 40 5441 5443 5462 C5' C H 41 5461 5463 5482 C5' G H 42 5481 5483 5505 C5' G H 43 5504 5506 5528 C5' U H 44 5527 5529 5548 C5' C H 45 5547 5549 5568 C5' C H 46 5567 5569 5588 C5' C H 47 5587 5589 5608 C5' A H 48 5607 5609 5630 C5' A H 49 5629 5631 5652 C5' G H 50 5651 5653 5675 C5' C H 51 5674 5676 5695 C5' C H 52 5694 5696 5715 C5' C H 53 5714 5716 5735 C5' G H 54 5734 5736 5758 C5' G H 55 5757 5759 5781 C5' A H 56 5780 5782 5803 C5' A H 57 5802 5804 5825 C5' A H 58 5824 5826 5847 C5' A H 59 5846 5848 5869 C5' A H 60 5868 5870 5891 C5' G H 61 5890 5892 5914 C5' G H 62 5913 5915 5937 C5' A H 63 5936 5938 5959 C5' G H 64 5958 5960 5982 C5' G H 65 5981 5983 6005 C5' A H 66 6004 6006 6027 C5' G H 67 6026 6028 6050 C5' G H 68 6049 6051 6073 C5' G H 69 6072 6074 6096 C5' U H 70 6095 6097 6116 C5' A H 71 6115 6117 6138 C5' U H 72 6137 6139 6158 C5' A H 73 6157 6159 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 1 P U A 3 distorted distorted 2 3 4 21 P G A 4 distorted distorted 9 22 23 24 44 P U A 5 distorted distorted 29 45 46 47 63 P A A 6 distorted distorted 52 64 65 66 85 P A A 7 distorted distorted 71 86 87 88 107 P C A 8 distorted distorted 93 108 109 110 127 P U A 9 distorted distorted 115 128 129 130 147 P C A 10 distorted distorted 135 148 149 150 167 P C A 11 distorted distorted 155 168 169 170 187 P G A 12 distorted distorted 175 188 189 190 210 P C A 13 distorted distorted 195 211 212 213 230 P C A 14 distorted distorted 218 231 232 233 250 P U A 15 distorted distorted 238 251 252 253 270 P A A 16 distorted distorted 258 271 272 273 292 P U A 17 distorted distorted 278 293 294 295 312 P G A 18 distorted distorted 300 313 314 315 335 P U A 19 distorted distorted 320 336 337 338 355 P C A 20 distorted distorted 343 356 357 358 375 P A A 21 distorted distorted 363 376 377 378 397 P U A 22 distorted distorted 383 398 399 400 417 P C A 23 distorted distorted 405 418 419 420 437 P U A 24 distorted distorted 425 438 439 440 457 P U A 25 distorted distorted 445 458 459 460 477 P A A 26 distorted distorted 465 478 479 480 523 P U B 28 distorted distorted 508 524 525 526 543 P A B 29 distorted distorted 531 544 545 546 565 P A B 30 distorted distorted 551 566 567 568 587 P A B 31 distorted distorted 573 588 589 590 609 P U B 32 distorted distorted 595 610 611 612 629 P G B 33 distorted distorted 617 630 631 632 652 P A B 34 distorted distorted 637 653 654 655 674 P U B 35 distorted distorted 660 675 676 677 694 P A B 36 distorted distorted 682 695 696 697 716 P U B 37 distorted distorted 702 717 718 719 736 P A B 38 distorted distorted 724 737 738 739 758 P G B 39 distorted distorted 744 759 760 761 781 P C B 40 distorted distorted 766 782 783 784 801 P C B 41 distorted distorted 789 802 803 804 821 P G B 42 distorted distorted 809 822 823 824 844 P G B 43 distorted distorted 829 845 846 847 867 P U B 44 distorted distorted 852 868 869 870 887 P C B 45 distorted distorted 875 888 889 890 907 P C B 46 distorted distorted 895 908 909 910 927 P C B 47 distorted distorted 915 928 929 930 947 P A B 48 distorted distorted 935 948 949 950 969 P A B 49 distorted distorted 955 970 971 972 991 P G B 50 distorted distorted 977 992 993 994 1014 P C B 51 distorted distorted 999 1015 1016 1017 1034 P C B 52 distorted distorted 1022 1035 1036 1037 1054 P C B 53 distorted distorted 1042 1055 1056 1057 1074 P G B 54 distorted distorted 1062 1075 1076 1077 1097 P G B 55 distorted distorted 1082 1098 1099 1100 1120 P A B 56 distorted distorted 1105 1121 1122 1123 1142 P A B 57 distorted distorted 1128 1143 1144 1145 1164 P A B 58 distorted distorted 1150 1165 1166 1167 1186 P A B 59 distorted distorted 1172 1187 1188 1189 1208 P A B 60 distorted distorted 1194 1209 1210 1211 1230 P G B 61 distorted distorted 1216 1231 1232 1233 1253 P G B 62 distorted distorted 1238 1254 1255 1256 1276 P A B 63 distorted distorted 1261 1277 1278 1279 1298 P G B 64 distorted distorted 1284 1299 1300 1301 1321 P G B 65 distorted distorted 1306 1322 1323 1324 1344 P A B 66 distorted distorted 1329 1345 1346 1347 1366 P G B 67 distorted distorted 1352 1367 1368 1369 1389 P G B 68 distorted distorted 1374 1390 1391 1392 1412 P G B 69 distorted distorted 1397 1413 1414 1415 1435 P U B 70 distorted distorted 1420 1436 1437 1438 1455 P A B 71 distorted distorted 1443 1456 1457 1458 1477 P U B 72 distorted distorted 1463 1478 1479 1480 1497 P A B 73 distorted distorted 1485 1498 1499 1500 1520 P U C 1 distorted distorted 1521 1522 1523 1540 P A C 2 distorted distorted 1528 1541 1542 1543 1562 P U C 3 distorted distorted 1548 1563 1564 1565 1582 P G C 4 distorted distorted 1570 1583 1584 1585 1605 P U C 5 distorted distorted 1590 1606 1607 1608 1624 P A C 6 distorted distorted 1613 1625 1626 1627 1646 P A C 7 distorted distorted 1632 1647 1648 1649 1668 P C C 8 distorted distorted 1654 1669 1670 1671 1688 P U C 9 distorted distorted 1676 1689 1690 1691 1708 P C C 10 distorted distorted 1696 1709 1710 1711 1728 P C C 11 distorted distorted 1716 1729 1730 1731 1748 P G C 12 distorted distorted 1736 1749 1750 1751 1771 P C C 13 distorted distorted 1756 1772 1773 1774 1791 P C C 14 distorted distorted 1779 1792 1793 1794 1811 P U C 15 distorted distorted 1799 1812 1813 1814 1831 P A C 16 distorted distorted 1819 1832 1833 1834 1853 P U C 17 distorted distorted 1839 1854 1855 1856 1873 P G C 18 distorted distorted 1861 1874 1875 1876 1896 P U C 19 distorted distorted 1881 1897 1898 1899 1916 P C C 20 distorted distorted 1904 1917 1918 1919 1936 P A C 21 distorted distorted 1924 1937 1938 1939 1958 P U C 22 distorted distorted 1944 1959 1960 1961 1978 P C C 23 distorted distorted 1966 1979 1980 1981 1998 P U C 24 distorted distorted 1986 1999 2000 2001 2018 P U C 25 distorted distorted 2006 2019 2020 2021 2071 P U D 28 distorted distorted 2056 2072 2073 2074 2091 P A D 29 distorted distorted 2079 2092 2093 2094 2113 P A D 30 distorted distorted 2099 2114 2115 2116 2135 P A D 31 distorted distorted 2121 2136 2137 2138 2157 P U D 32 distorted distorted 2143 2158 2159 2160 2177 P G D 33 distorted distorted 2165 2178 2179 2180 2200 P A D 34 distorted distorted 2185 2201 2202 2203 2222 P U D 35 distorted distorted 2208 2223 2224 2225 2242 P A D 36 distorted distorted 2230 2243 2244 2245 2264 P U D 37 distorted distorted 2250 2265 2266 2267 2284 P A D 38 distorted distorted 2272 2285 2286 2287 2306 P G D 39 distorted distorted 2292 2307 2308 2309 2329 P C D 40 distorted distorted 2314 2330 2331 2332 2349 P C D 41 distorted distorted 2337 2350 2351 2352 2369 P G D 42 distorted distorted 2357 2370 2371 2372 2392 P G D 43 distorted distorted 2377 2393 2394 2395 2415 P U D 44 distorted distorted 2400 2416 2417 2418 2435 P C D 45 distorted distorted 2423 2436 2437 2438 2455 P C D 46 distorted distorted 2443 2456 2457 2458 2475 P C D 47 distorted distorted 2463 2476 2477 2478 2495 P A D 48 distorted distorted 2483 2496 2497 2498 2517 P A D 49 distorted distorted 2503 2518 2519 2520 2539 P G D 50 distorted distorted 2525 2540 2541 2542 2562 P C D 51 distorted distorted 2547 2563 2564 2565 2582 P C D 52 distorted distorted 2570 2583 2584 2585 2602 P C D 53 distorted distorted 2590 2603 2604 2605 2622 P G D 54 distorted distorted 2610 2623 2624 2625 2645 P G D 55 distorted distorted 2630 2646 2647 2648 2668 P A D 56 distorted distorted 2653 2669 2670 2671 2690 P A D 57 distorted distorted 2676 2691 2692 2693 2712 P A D 58 distorted distorted 2698 2713 2714 2715 2734 P A D 59 distorted distorted 2720 2735 2736 2737 2756 P A D 60 distorted distorted 2742 2757 2758 2759 2778 P G D 61 distorted distorted 2764 2779 2780 2781 2801 P G D 62 distorted distorted 2786 2802 2803 2804 2824 P A D 63 distorted distorted 2809 2825 2826 2827 2846 P G D 64 distorted distorted 2832 2847 2848 2849 2869 P G D 65 distorted distorted 2854 2870 2871 2872 2892 P A D 66 distorted distorted 2877 2893 2894 2895 2914 P G D 67 distorted distorted 2900 2915 2916 2917 2937 P G D 68 distorted distorted 2922 2938 2939 2940 2960 P G D 69 distorted distorted 2945 2961 2962 2963 2983 P U D 70 distorted distorted 2968 2984 2985 2986 3003 P A D 71 distorted distorted 2991 3004 3005 3006 3025 P U D 72 distorted distorted 3011 3026 3027 3028 3045 P A D 73 distorted distorted 3033 3046 3047 3048 3068 P U E 1 OK OK 3069 3070 3071 3088 P A E 2 distorted distorted 3076 3089 3090 3091 3110 P U E 3 distorted distorted 3096 3111 3112 3113 3130 P G E 4 distorted distorted 3118 3131 3132 3133 3153 P U E 5 distorted distorted 3138 3154 3155 3156 3172 P A E 6 distorted distorted 3161 3173 3174 3175 3194 P A E 7 distorted distorted 3180 3195 3196 3197 3216 P C E 8 distorted distorted 3202 3217 3218 3219 3236 P U E 9 distorted distorted 3224 3237 3238 3239 3256 P C E 10 distorted distorted 3244 3257 3258 3259 3276 P C E 11 distorted distorted 3264 3277 3278 3279 3296 P G E 12 distorted distorted 3284 3297 3298 3299 3319 P C E 13 distorted distorted 3304 3320 3321 3322 3339 P C E 14 distorted distorted 3327 3340 3341 3342 3359 P U E 15 distorted distorted 3347 3360 3361 3362 3379 P A E 16 distorted distorted 3367 3380 3381 3382 3401 P U E 17 distorted distorted 3387 3402 3403 3404 3421 P G E 18 distorted distorted 3409 3422 3423 3424 3444 P U E 19 distorted distorted 3429 3445 3446 3447 3464 P C E 20 distorted distorted 3452 3465 3466 3467 3484 P A E 21 distorted distorted 3472 3485 3486 3487 3506 P U E 22 distorted distorted 3492 3507 3508 3509 3526 P C E 23 distorted distorted 3514 3527 3528 3529 3546 P U E 24 distorted distorted 3534 3547 3548 3549 3566 P U E 25 distorted distorted 3554 3567 3568 3569 3586 P A E 26 distorted distorted 3574 3587 3588 3589 3641 P U F 28 distorted distorted 3626 3642 3643 3644 3661 P A F 29 distorted distorted 3649 3662 3663 3664 3683 P A F 30 distorted distorted 3669 3684 3685 3686 3705 P A F 31 distorted distorted 3691 3706 3707 3708 3727 P U F 32 distorted distorted 3713 3728 3729 3730 3747 P G F 33 distorted distorted 3735 3748 3749 3750 3770 P A F 34 distorted distorted 3755 3771 3772 3773 3792 P U F 35 distorted distorted 3778 3793 3794 3795 3812 P A F 36 distorted distorted 3800 3813 3814 3815 3834 P U F 37 distorted distorted 3820 3835 3836 3837 3854 P A F 38 distorted distorted 3842 3855 3856 3857 3876 P G F 39 distorted distorted 3862 3877 3878 3879 3899 P C F 40 distorted distorted 3884 3900 3901 3902 3919 P C F 41 distorted distorted 3907 3920 3921 3922 3939 P G F 42 distorted distorted 3927 3940 3941 3942 3962 P G F 43 distorted distorted 3947 3963 3964 3965 3985 P U F 44 distorted distorted 3970 3986 3987 3988 4005 P C F 45 distorted distorted 3993 4006 4007 4008 4025 P C F 46 distorted distorted 4013 4026 4027 4028 4045 P C F 47 distorted distorted 4033 4046 4047 4048 4065 P A F 48 distorted distorted 4053 4066 4067 4068 4087 P A F 49 distorted distorted 4073 4088 4089 4090 4109 P G F 50 distorted distorted 4095 4110 4111 4112 4132 P C F 51 distorted distorted 4117 4133 4134 4135 4152 P C F 52 distorted distorted 4140 4153 4154 4155 4172 P C F 53 distorted distorted 4160 4173 4174 4175 4192 P G F 54 distorted distorted 4180 4193 4194 4195 4215 P G F 55 distorted distorted 4200 4216 4217 4218 4238 P A F 56 distorted distorted 4223 4239 4240 4241 4260 P A F 57 distorted distorted 4246 4261 4262 4263 4282 P A F 58 distorted distorted 4268 4283 4284 4285 4304 P A F 59 distorted distorted 4290 4305 4306 4307 4326 P A F 60 distorted distorted 4312 4327 4328 4329 4348 P G F 61 distorted distorted 4334 4349 4350 4351 4371 P G F 62 distorted distorted 4356 4372 4373 4374 4394 P A F 63 distorted distorted 4379 4395 4396 4397 4416 P G F 64 distorted distorted 4402 4417 4418 4419 4439 P G F 65 distorted distorted 4424 4440 4441 4442 4462 P A F 66 distorted distorted 4447 4463 4464 4465 4484 P G F 67 distorted distorted 4470 4485 4486 4487 4507 P G F 68 distorted distorted 4492 4508 4509 4510 4530 P G F 69 distorted distorted 4515 4531 4532 4533 4553 P U F 70 distorted distorted 4538 4554 4555 4556 4573 P A F 71 distorted distorted 4561 4574 4575 4576 4595 P U F 72 distorted distorted 4581 4596 4597 4598 4615 P A F 73 distorted distorted 4603 4616 4617 4618 4638 P U G 1 distorted distorted 4639 4640 4641 4658 P A G 2 distorted distorted 4646 4659 4660 4661 4680 P U G 3 distorted distorted 4666 4681 4682 4683 4700 P G G 4 distorted distorted 4688 4701 4702 4703 4723 P U G 5 distorted distorted 4708 4724 4725 4726 4742 P A G 6 distorted distorted 4731 4743 4744 4745 4764 P A G 7 distorted distorted 4750 4765 4766 4767 4786 P C G 8 distorted distorted 4772 4787 4788 4789 4806 P U G 9 distorted distorted 4794 4807 4808 4809 4826 P C G 10 distorted distorted 4814 4827 4828 4829 4846 P C G 11 distorted distorted 4834 4847 4848 4849 4866 P G G 12 distorted distorted 4854 4867 4868 4869 4889 P C G 13 distorted distorted 4874 4890 4891 4892 4909 P C G 14 distorted distorted 4897 4910 4911 4912 4929 P U G 15 distorted distorted 4917 4930 4931 4932 4949 P A G 16 distorted distorted 4937 4950 4951 4952 4971 P U G 17 distorted distorted 4957 4972 4973 4974 4991 P G G 18 distorted distorted 4979 4992 4993 4994 5014 P U G 19 distorted distorted 4999 5015 5016 5017 5034 P C G 20 distorted distorted 5022 5035 5036 5037 5054 P A G 21 distorted distorted 5042 5055 5056 5057 5076 P U G 22 distorted distorted 5062 5077 5078 5079 5096 P C G 23 distorted distorted 5084 5097 5098 5099 5116 P U G 24 distorted distorted 5104 5117 5118 5119 5136 P U G 25 distorted distorted 5124 5137 5138 5139 5180 P U H 28 distorted distorted 5165 5181 5182 5183 5200 P A H 29 distorted distorted 5188 5201 5202 5203 5222 P A H 30 distorted distorted 5208 5223 5224 5225 5244 P A H 31 distorted distorted 5230 5245 5246 5247 5266 P U H 32 distorted distorted 5252 5267 5268 5269 5286 P G H 33 distorted distorted 5274 5287 5288 5289 5309 P A H 34 distorted 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5694 5711 P C H 53 distorted distorted 5699 5712 5713 5714 5731 P G H 54 distorted distorted 5719 5732 5733 5734 5754 P G H 55 distorted distorted 5739 5755 5756 5757 5777 P A H 56 distorted distorted 5762 5778 5779 5780 5799 P A H 57 distorted distorted 5785 5800 5801 5802 5821 P A H 58 distorted distorted 5807 5822 5823 5824 5843 P A H 59 distorted distorted 5829 5844 5845 5846 5865 P A H 60 distorted distorted 5851 5866 5867 5868 5887 P G H 61 distorted distorted 5873 5888 5889 5890 5910 P G H 62 distorted distorted 5895 5911 5912 5913 5933 P A H 63 distorted distorted 5918 5934 5935 5936 5955 P G H 64 distorted distorted 5941 5956 5957 5958 5978 P G H 65 distorted distorted 5963 5979 5980 5981 6001 P A H 66 distorted distorted 5986 6002 6003 6004 6023 P G H 67 distorted distorted 6009 6024 6025 6026 6046 P G H 68 distorted distorted 6031 6047 6048 6049 6069 P G H 69 distorted distorted 6054 6070 6071 6072 6092 P U H 70 distorted distorted 6077 6093 6094 6095 6112 P A H 71 distorted distorted 6100 6113 6114 6115 6134 P U H 72 distorted distorted 6120 6135 6136 6137 6154 P A H 73 distorted distorted 6142 6155 6156 6157 ---------------------------------------------------------------------------------