ID code: '4PRF' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 12 C1' A B 99 alpha beta 7 29 13 10 45 C1' U B 100 alpha beta 40 60 46 43 75 C1' G B 101 alpha beta 70 93 76 73 109 C1' G B 102 alpha beta 104 127 110 107 143 C1' C B 103 alpha beta 138 158 144 141 174 C1' C B 104 alpha beta 169 189 175 172 205 C1' G B 105 alpha beta 200 223 206 203 239 C1' G B 106 alpha beta 234 257 240 237 273 C1' C B 107 alpha beta 268 288 274 271 304 C1' A B 108 alpha beta 299 321 305 302 337 C1' U B 109 alpha beta 332 352 338 335 367 C1' G B 110 alpha beta 362 385 368 365 401 C1' G B 111 alpha beta 396 419 402 399 435 C1' U B 112 alpha beta 430 450 436 433 465 C1' C B 113 alpha beta 460 480 466 463 496 C1' C B 114 alpha beta 491 511 497 494 527 C1' C B 115 alpha beta 522 542 528 525 591 C1' G B 117 alpha beta 586 609 592 589 625 C1' C B 118 alpha beta 620 640 626 623 656 C1' C B 119 alpha beta 651 671 657 654 687 C1' U B 120 alpha beta 682 702 688 685 717 C1' C B 121 alpha beta 712 732 718 715 748 C1' C B 122 alpha beta 743 763 749 746 779 C1' U B 123 alpha beta 774 794 780 777 809 C1' C B 124 alpha beta 804 824 810 807 840 C1' G B 125 alpha beta 835 858 841 838 874 C1' C B 126 alpha beta 869 889 875 872 905 C1' U B 127 alpha beta 900 920 906 903 935 C1' G B 128 alpha beta 930 953 936 933 969 C1' G B 129 alpha beta 964 987 970 967 1003 C1' C B 130 alpha beta 998 1018 1004 1001 1034 C1' G B 131 alpha beta 1029 1052 1035 1032 1068 C1' C B 132 alpha beta 1063 1083 1069 1066 1099 C1' C B 133 alpha beta 1094 1114 1100 1097 1130 C1' G B 134 alpha beta 1125 1148 1131 1128 1164 C1' G B 135 alpha beta 1159 1182 1165 1162 1198 C1' C B 136 alpha beta 1193 1213 1199 1196 1229 C1' U B 137 alpha beta 1224 1244 1230 1227 1259 C1' G B 138 alpha beta 1254 1277 1260 1257 1293 C1' G B 139 alpha beta 1288 1311 1294 1291 1327 C1' G B 140 alpha beta 1322 1345 1328 1325 1361 C1' C B 141 alpha beta 1356 1375 1362 1359 1391 C1' A B 142 alpha beta 1386 1408 1392 1389 1424 C1' A B 143 alpha beta 1419 1441 1425 1422 1457 C1' C B 144 alpha beta 1452 1472 1458 1455 1488 C1' A B 145 alpha beta 1483 1505 1489 1486 1521 C1' C B 146 alpha beta 1516 1536 1522 1519 1552 C1' C B 147 alpha beta 1547 1567 1553 1550 1583 C1' A B 148 alpha beta 1578 1600 1584 1581 1616 C1' U B 149 alpha beta 1611 1631 1617 1614 1646 C1' U B 150 alpha beta 1641 1661 1647 1644 1676 C1' G B 151 alpha beta 1671 1694 1677 1674 1710 C1' C B 152 alpha beta 1705 1725 1711 1708 1741 C1' A B 153 alpha beta 1736 1758 1742 1739 1774 C1' C B 154 alpha beta 1769 1789 1775 1772 1805 C1' U B 155 alpha beta 1800 1820 1806 1803 1835 C1' C B 156 alpha beta 1830 1850 1836 1833 1866 C1' C B 157 alpha beta 1861 1881 1867 1864 1897 C1' G B 158 alpha beta 1892 1915 1898 1895 1931 C1' G B 159 alpha beta 1926 1949 1932 1929 1965 C1' U B 160 alpha beta 1960 1980 1966 1963 1995 C1' G B 161 alpha beta 1990 2013 1996 1993 2029 C1' G B 162 alpha beta 2024 2047 2030 2027 2063 C1' U B 163 alpha beta 2058 2078 2064 2061 2093 C1' G B 164 alpha beta 2088 2111 2094 2091 2127 C1' A B 165 alpha beta 2122 2144 2128 2125 2160 C1' A B 166 alpha beta 2155 2177 2161 2158 2193 C1' U B 167 alpha beta 2188 2208 2194 2191 2223 C1' G B 168 alpha beta 2218 2241 2224 2221 2257 C1' G B 169 alpha beta 2252 2275 2258 2255 2291 C1' G B 170 alpha beta 2286 2309 2292 2289 2325 C1' A B 171 alpha beta 2320 2342 2326 2323 2358 C1' C B 172 alpha beta 2353 2373 2359 2356 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 10 C2' A B 99 OK OK 12 8 27 11 43 C2' U B 100 OK OK 45 41 58 44 73 C2' G B 101 OK OK 75 71 91 74 107 C2' G B 102 OK OK 109 105 125 108 141 C2' C B 103 OK OK 143 139 156 142 172 C2' C B 104 OK OK 174 170 187 173 203 C2' G B 105 OK OK 205 201 221 204 237 C2' G B 106 OK OK 239 235 255 238 271 C2' C B 107 OK OK 273 269 286 272 302 C2' A B 108 OK OK 304 300 319 303 335 C2' U B 109 OK OK 337 333 350 336 365 C2' G B 110 OK OK 367 363 383 366 399 C2' G B 111 OK OK 401 397 417 400 433 C2' U B 112 OK OK 435 431 448 434 463 C2' C B 113 OK OK 465 461 478 464 494 C2' C B 114 OK OK 496 492 509 495 525 C2' C B 115 OK OK 527 523 540 526 589 C2' G B 117 OK OK 591 587 607 590 623 C2' C B 118 OK OK 625 621 638 624 654 C2' C B 119 OK OK 656 652 669 655 685 C2' U B 120 OK OK 687 683 700 686 715 C2' C B 121 OK OK 717 713 730 716 746 C2' C B 122 OK OK 748 744 761 747 777 C2' U B 123 OK OK 779 775 792 778 807 C2' C B 124 OK OK 809 805 822 808 838 C2' G B 125 OK OK 840 836 856 839 872 C2' C B 126 OK OK 874 870 887 873 903 C2' U B 127 OK OK 905 901 918 904 933 C2' G B 128 OK OK 935 931 951 934 967 C2' G B 129 OK OK 969 965 985 968 1001 C2' C B 130 OK OK 1003 999 1016 1002 1032 C2' G B 131 OK OK 1034 1030 1050 1033 1066 C2' C B 132 OK OK 1068 1064 1081 1067 1097 C2' C B 133 OK OK 1099 1095 1112 1098 1128 C2' G B 134 OK OK 1130 1126 1146 1129 1162 C2' G B 135 OK OK 1164 1160 1180 1163 1196 C2' C B 136 OK OK 1198 1194 1211 1197 1227 C2' U B 137 OK OK 1229 1225 1242 1228 1257 C2' G B 138 OK OK 1259 1255 1275 1258 1291 C2' G B 139 OK OK 1293 1289 1309 1292 1325 C2' G B 140 OK OK 1327 1323 1343 1326 1359 C2' C B 141 OK OK 1361 1357 1374 1360 1389 C2' A B 142 OK OK 1391 1387 1406 1390 1422 C2' A B 143 OK OK 1424 1420 1439 1423 1455 C2' C B 144 OK OK 1457 1453 1470 1456 1486 C2' A B 145 OK OK 1488 1484 1503 1487 1519 C2' C B 146 OK OK 1521 1517 1534 1520 1550 C2' C B 147 OK OK 1552 1548 1565 1551 1581 C2' A B 148 OK OK 1583 1579 1598 1582 1614 C2' U B 149 OK OK 1616 1612 1629 1615 1644 C2' U B 150 OK OK 1646 1642 1659 1645 1674 C2' G B 151 OK OK 1676 1672 1692 1675 1708 C2' C B 152 OK OK 1710 1706 1723 1709 1739 C2' A B 153 OK OK 1741 1737 1756 1740 1772 C2' C B 154 OK OK 1774 1770 1787 1773 1803 C2' U B 155 OK OK 1805 1801 1818 1804 1833 C2' C B 156 OK OK 1835 1831 1848 1834 1864 C2' C B 157 OK OK 1866 1862 1879 1865 1895 C2' G B 158 OK OK 1897 1893 1913 1896 1929 C2' G B 159 OK OK 1931 1927 1947 1930 1963 C2' U B 160 OK OK 1965 1961 1978 1964 1993 C2' G B 161 OK OK 1995 1991 2011 1994 2027 C2' G B 162 OK OK 2029 2025 2045 2028 2061 C2' U B 163 OK OK 2063 2059 2076 2062 2091 C2' G B 164 OK OK 2093 2089 2109 2092 2125 C2' A B 165 OK OK 2127 2123 2142 2126 2158 C2' A B 166 OK OK 2160 2156 2175 2159 2191 C2' U B 167 OK OK 2193 2189 2206 2192 2221 C2' G B 168 OK OK 2223 2219 2239 2222 2255 C2' G B 169 OK OK 2257 2253 2273 2256 2289 C2' G B 170 OK OK 2291 2287 2307 2290 2323 C2' A B 171 OK OK 2325 2321 2340 2324 2356 C2' C B 172 OK OK 2358 2354 2371 2357 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 8 C3' A B 99 OK OK 6 26 9 10 41 C3' U B 100 OK OK 39 57 42 43 71 C3' G B 101 OK OK 69 90 72 73 105 C3' G B 102 OK OK 103 124 106 107 139 C3' C B 103 OK OK 137 155 140 141 170 C3' C B 104 OK OK 168 186 171 172 201 C3' G B 105 OK OK 199 220 202 203 235 C3' G B 106 OK OK 233 254 236 237 269 C3' C B 107 OK OK 267 285 270 271 300 C3' A B 108 OK OK 298 318 301 302 333 C3' U B 109 OK OK 331 349 334 335 363 C3' G B 110 OK OK 361 382 364 365 397 C3' G B 111 OK OK 395 416 398 399 431 C3' U B 112 OK OK 429 447 432 433 461 C3' C B 113 OK OK 459 477 462 463 492 C3' C B 114 OK OK 490 508 493 494 523 C3' C B 115 OK OK 521 539 524 525 587 C3' G B 117 OK OK 585 606 588 589 621 C3' C B 118 OK OK 619 637 622 623 652 C3' C B 119 OK OK 650 668 653 654 683 C3' U B 120 OK OK 681 699 684 685 713 C3' C B 121 OK OK 711 729 714 715 744 C3' C B 122 OK OK 742 760 745 746 775 C3' U B 123 OK OK 773 791 776 777 805 C3' C B 124 OK OK 803 821 806 807 836 C3' G B 125 OK OK 834 855 837 838 870 C3' C B 126 OK OK 868 886 871 872 901 C3' U B 127 OK OK 899 917 902 903 931 C3' G B 128 OK OK 929 950 932 933 965 C3' G B 129 OK OK 963 984 966 967 999 C3' C B 130 OK OK 997 1015 1000 1001 1030 C3' G B 131 OK OK 1028 1049 1031 1032 1064 C3' C B 132 OK OK 1062 1080 1065 1066 1095 C3' C B 133 OK OK 1093 1111 1096 1097 1126 C3' G B 134 OK OK 1124 1145 1127 1128 1160 C3' G B 135 OK OK 1158 1179 1161 1162 1194 C3' C B 136 OK OK 1192 1210 1195 1196 1225 C3' U B 137 OK OK 1223 1241 1226 1227 1255 C3' G B 138 OK OK 1253 1274 1256 1257 1289 C3' G B 139 OK OK 1287 1308 1290 1291 1323 C3' G B 140 OK OK 1321 1342 1324 1325 1357 C3' C B 141 OK OK 1355 1373 1358 1359 1387 C3' A B 142 OK OK 1385 1405 1388 1389 1420 C3' A B 143 OK OK 1418 1438 1421 1422 1453 C3' C B 144 OK OK 1451 1469 1454 1455 1484 C3' A B 145 OK OK 1482 1502 1485 1486 1517 C3' C B 146 OK OK 1515 1533 1518 1519 1548 C3' C B 147 OK OK 1546 1564 1549 1550 1579 C3' A B 148 OK OK 1577 1597 1580 1581 1612 C3' U B 149 OK OK 1610 1628 1613 1614 1642 C3' U B 150 OK OK 1640 1658 1643 1644 1672 C3' G B 151 OK OK 1670 1691 1673 1674 1706 C3' C B 152 OK OK 1704 1722 1707 1708 1737 C3' A B 153 OK OK 1735 1755 1738 1739 1770 C3' C B 154 OK OK 1768 1786 1771 1772 1801 C3' U B 155 OK OK 1799 1817 1802 1803 1831 C3' C B 156 OK OK 1829 1847 1832 1833 1862 C3' C B 157 OK OK 1860 1878 1863 1864 1893 C3' G B 158 OK OK 1891 1912 1894 1895 1927 C3' G B 159 OK OK 1925 1946 1928 1929 1961 C3' U B 160 OK OK 1959 1977 1962 1963 1991 C3' G B 161 OK OK 1989 2010 1992 1993 2025 C3' G B 162 OK OK 2023 2044 2026 2027 2059 C3' U B 163 OK OK 2057 2075 2060 2061 2089 C3' G B 164 OK OK 2087 2108 2090 2091 2123 C3' A B 165 OK OK 2121 2141 2124 2125 2156 C3' A B 166 OK OK 2154 2174 2157 2158 2189 C3' U B 167 OK OK 2187 2205 2190 2191 2219 C3' G B 168 OK OK 2217 2238 2220 2221 2253 C3' G B 169 OK OK 2251 2272 2254 2255 2287 C3' G B 170 OK OK 2285 2306 2288 2289 2321 C3' A B 171 OK OK 2319 2339 2322 2323 2354 C3' C B 172 OK OK 2352 2370 2355 2356 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 6 C4' A B 99 OK OK 8 25 5 7 39 C4' U B 100 OK OK 41 56 38 40 69 C4' G B 101 OK OK 71 89 68 70 103 C4' G B 102 OK OK 105 123 102 104 137 C4' C B 103 OK OK 139 154 136 138 168 C4' C B 104 OK OK 170 185 167 169 199 C4' G B 105 OK OK 201 219 198 200 233 C4' G B 106 OK OK 235 253 232 234 267 C4' C B 107 OK OK 269 284 266 268 298 C4' A B 108 OK OK 300 317 297 299 331 C4' U B 109 OK OK 333 348 330 332 361 C4' G B 110 OK OK 363 381 360 362 395 C4' G B 111 OK OK 397 415 394 396 429 C4' U B 112 OK OK 431 446 428 430 459 C4' C B 113 OK OK 461 476 458 460 490 C4' C B 114 OK OK 492 507 489 491 521 C4' C B 115 OK OK 523 538 520 522 585 C4' G B 117 OK 587 605 586 619 C4' C B 118 OK OK 621 636 618 620 650 C4' C B 119 OK OK 652 667 649 651 681 C4' U B 120 OK OK 683 698 680 682 711 C4' C B 121 OK OK 713 728 710 712 742 C4' C B 122 OK OK 744 759 741 743 773 C4' U B 123 OK OK 775 790 772 774 803 C4' C B 124 OK OK 805 820 802 804 834 C4' G B 125 OK OK 836 854 833 835 868 C4' C B 126 OK OK 870 885 867 869 899 C4' U B 127 OK OK 901 916 898 900 929 C4' G B 128 OK OK 931 949 928 930 963 C4' G B 129 OK OK 965 983 962 964 997 C4' C B 130 OK OK 999 1014 996 998 1028 C4' G B 131 OK OK 1030 1048 1027 1029 1062 C4' C B 132 OK OK 1064 1079 1061 1063 1093 C4' C B 133 OK OK 1095 1110 1092 1094 1124 C4' G B 134 OK OK 1126 1144 1123 1125 1158 C4' G B 135 OK OK 1160 1178 1157 1159 1192 C4' C B 136 OK OK 1194 1209 1191 1193 1223 C4' U B 137 OK OK 1225 1240 1222 1224 1253 C4' G B 138 OK OK 1255 1273 1252 1254 1287 C4' G B 139 OK OK 1289 1307 1286 1288 1321 C4' G B 140 OK OK 1323 1341 1320 1322 1355 C4' C B 141 OK OK 1357 1372 1354 1356 1385 C4' A B 142 OK OK 1387 1404 1384 1386 1418 C4' A B 143 OK OK 1420 1437 1417 1419 1451 C4' C B 144 OK OK 1453 1468 1450 1452 1482 C4' A B 145 OK OK 1484 1501 1481 1483 1515 C4' C B 146 OK OK 1517 1532 1514 1516 1546 C4' C B 147 OK OK 1548 1563 1545 1547 1577 C4' A B 148 OK OK 1579 1596 1576 1578 1610 C4' U B 149 OK OK 1612 1627 1609 1611 1640 C4' U B 150 OK OK 1642 1657 1639 1641 1670 C4' G B 151 OK OK 1672 1690 1669 1671 1704 C4' C B 152 OK OK 1706 1721 1703 1705 1735 C4' A B 153 OK OK 1737 1754 1734 1736 1768 C4' C B 154 OK OK 1770 1785 1767 1769 1799 C4' U B 155 OK OK 1801 1816 1798 1800 1829 C4' C B 156 OK OK 1831 1846 1828 1830 1860 C4' C B 157 OK OK 1862 1877 1859 1861 1891 C4' G B 158 OK OK 1893 1911 1890 1892 1925 C4' G B 159 OK OK 1927 1945 1924 1926 1959 C4' U B 160 OK OK 1961 1976 1958 1960 1989 C4' G B 161 OK OK 1991 2009 1988 1990 2023 C4' G B 162 OK OK 2025 2043 2022 2024 2057 C4' U B 163 OK OK 2059 2074 2056 2058 2087 C4' G B 164 OK OK 2089 2107 2086 2088 2121 C4' A B 165 OK OK 2123 2140 2120 2122 2154 C4' A B 166 OK OK 2156 2173 2153 2155 2187 C4' U B 167 OK OK 2189 2204 2186 2188 2217 C4' G B 168 OK OK 2219 2237 2216 2218 2251 C4' G B 169 OK OK 2253 2271 2250 2252 2285 C4' G B 170 OK OK 2287 2305 2284 2286 2319 C4' A B 171 OK OK 2321 2338 2318 2320 2352 C4' C B 172 OK OK 2354 2369 2351 2353 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 5 C5' A B 99 OK OK 4 23 24 6 38 C5' U B 100 OK OK 37 54 55 39 68 C5' G B 101 OK OK 67 87 88 69 102 C5' G B 102 OK OK 101 121 122 103 136 C5' C B 103 OK OK 135 152 153 137 167 C5' C B 104 OK OK 166 183 184 168 198 C5' G B 105 OK OK 197 217 218 199 232 C5' G B 106 OK OK 231 251 252 233 266 C5' C B 107 OK OK 265 282 283 267 297 C5' A B 108 OK OK 296 315 316 298 330 C5' U B 109 OK OK 329 346 347 331 360 C5' G B 110 OK OK 359 379 380 361 394 C5' G B 111 OK OK 393 413 414 395 428 C5' U B 112 OK OK 427 444 445 429 458 C5' C B 113 OK OK 457 474 475 459 489 C5' C B 114 OK OK 488 505 506 490 520 C5' C B 115 OK OK 519 536 537 521 618 C5' C B 118 OK OK 617 634 635 619 649 C5' C B 119 OK OK 648 665 666 650 680 C5' U B 120 OK OK 679 696 697 681 710 C5' C B 121 OK OK 709 726 727 711 741 C5' C B 122 OK OK 740 757 758 742 772 C5' U B 123 OK OK 771 788 789 773 802 C5' C B 124 OK OK 801 818 819 803 833 C5' G B 125 OK OK 832 852 853 834 867 C5' C B 126 OK OK 866 883 884 868 898 C5' U B 127 OK OK 897 914 915 899 928 C5' G B 128 OK OK 927 947 948 929 962 C5' G B 129 OK OK 961 981 982 963 996 C5' C B 130 OK OK 995 1012 1013 997 1027 C5' G B 131 OK OK 1026 1046 1047 1028 1061 C5' C B 132 OK OK 1060 1077 1078 1062 1092 C5' C B 133 OK OK 1091 1108 1109 1093 1123 C5' G B 134 OK OK 1122 1142 1143 1124 1157 C5' G B 135 OK OK 1156 1176 1177 1158 1191 C5' C B 136 OK OK 1190 1207 1208 1192 1222 C5' U B 137 OK OK 1221 1238 1239 1223 1252 C5' G B 138 OK OK 1251 1271 1272 1253 1286 C5' G B 139 OK OK 1285 1305 1306 1287 1320 C5' G B 140 OK OK 1319 1339 1340 1321 1354 C5' C B 141 OK OK 1353 1370 1371 1355 1384 C5' A B 142 OK OK 1383 1402 1403 1385 1417 C5' A B 143 OK OK 1416 1435 1436 1418 1450 C5' C B 144 OK OK 1449 1466 1467 1451 1481 C5' A B 145 OK OK 1480 1499 1500 1482 1514 C5' C B 146 OK OK 1513 1530 1531 1515 1545 C5' C B 147 OK OK 1544 1561 1562 1546 1576 C5' A B 148 OK OK 1575 1594 1595 1577 1609 C5' U B 149 OK OK 1608 1625 1626 1610 1639 C5' U B 150 OK OK 1638 1655 1656 1640 1669 C5' G B 151 OK OK 1668 1688 1689 1670 1703 C5' C B 152 OK OK 1702 1719 1720 1704 1734 C5' A B 153 OK OK 1733 1752 1753 1735 1767 C5' C B 154 OK OK 1766 1783 1784 1768 1798 C5' U B 155 OK OK 1797 1814 1815 1799 1828 C5' C B 156 OK OK 1827 1844 1845 1829 1859 C5' C B 157 OK OK 1858 1875 1876 1860 1890 C5' G B 158 OK OK 1889 1909 1910 1891 1924 C5' G B 159 OK OK 1923 1943 1944 1925 1958 C5' U B 160 OK OK 1957 1974 1975 1959 1988 C5' G B 161 OK OK 1987 2007 2008 1989 2022 C5' G B 162 OK OK 2021 2041 2042 2023 2056 C5' U B 163 OK OK 2055 2072 2073 2057 2086 C5' G B 164 OK OK 2085 2105 2106 2087 2120 C5' A B 165 OK OK 2119 2138 2139 2121 2153 C5' A B 166 OK OK 2152 2171 2172 2154 2186 C5' U B 167 OK OK 2185 2202 2203 2187 2216 C5' G B 168 OK OK 2215 2235 2236 2217 2250 C5' G B 169 OK OK 2249 2269 2270 2251 2284 C5' G B 170 OK OK 2283 2303 2304 2285 2318 C5' A B 171 OK OK 2317 2336 2337 2319 2351 C5' C B 172 OK OK 2350 2367 2368 2352 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 1 P A B 99 distorted distorted 2 3 4 34 P U B 100 distorted distorted 9 35 36 37 64 P G B 101 distorted distorted 42 65 66 67 98 P G B 102 distorted distorted 72 99 100 101 132 P C B 103 distorted distorted 106 133 134 135 163 P C B 104 distorted distorted 140 164 165 166 194 P G B 105 distorted distorted 171 195 196 197 228 P G B 106 distorted distorted 202 229 230 231 262 P C B 107 distorted distorted 236 263 264 265 293 P A B 108 distorted distorted 270 294 295 296 326 P U B 109 distorted distorted 301 327 328 329 356 P G B 110 distorted distorted 334 357 358 359 390 P G B 111 distorted distorted 364 391 392 393 424 P U B 112 distorted distorted 398 425 426 427 454 P C B 113 distorted distorted 432 455 456 457 485 P C B 114 distorted distorted 462 486 487 488 516 P C B 115 distorted distorted 493 517 518 519 547 P A B 116 524 580 P G B 117 614 P C B 118 distorted distorted 588 615 616 617 645 P C B 119 distorted distorted 622 646 647 648 676 P U B 120 distorted distorted 653 677 678 679 706 P C B 121 distorted distorted 684 707 708 709 737 P C B 122 distorted distorted 714 738 739 740 768 P U B 123 distorted distorted 745 769 770 771 798 P C B 124 distorted distorted 776 799 800 801 829 P G B 125 distorted distorted 806 830 831 832 863 P C B 126 distorted distorted 837 864 865 866 894 P U B 127 distorted distorted 871 895 896 897 924 P G B 128 distorted distorted 902 925 926 927 958 P G B 129 distorted distorted 932 959 960 961 992 P C B 130 distorted distorted 966 993 994 995 1023 P G B 131 distorted distorted 1000 1024 1025 1026 1057 P C B 132 distorted distorted 1031 1058 1059 1060 1088 P C B 133 distorted distorted 1065 1089 1090 1091 1119 P G B 134 distorted distorted 1096 1120 1121 1122 1153 P G B 135 distorted distorted 1127 1154 1155 1156 1187 P C B 136 distorted distorted 1161 1188 1189 1190 1218 P U B 137 distorted distorted 1195 1219 1220 1221 1248 P G B 138 distorted distorted 1226 1249 1250 1251 1282 P G B 139 distorted distorted 1256 1283 1284 1285 1316 P G B 140 distorted distorted 1290 1317 1318 1319 1350 P C B 141 distorted distorted 1324 1351 1352 1353 1380 P A B 142 distorted distorted 1358 1381 1382 1383 1413 P A B 143 distorted distorted 1388 1414 1415 1416 1446 P C B 144 distorted distorted 1421 1447 1448 1449 1477 P A B 145 distorted distorted 1454 1478 1479 1480 1510 P C B 146 distorted distorted 1485 1511 1512 1513 1541 P C B 147 distorted distorted 1518 1542 1543 1544 1572 P A B 148 distorted distorted 1549 1573 1574 1575 1605 P U B 149 distorted distorted 1580 1606 1607 1608 1635 P U B 150 distorted distorted 1613 1636 1637 1638 1665 P G B 151 distorted distorted 1643 1666 1667 1668 1699 P C B 152 distorted distorted 1673 1700 1701 1702 1730 P A B 153 distorted distorted 1707 1731 1732 1733 1763 P C B 154 distorted distorted 1738 1764 1765 1766 1794 P U B 155 distorted distorted 1771 1795 1796 1797 1824 P C B 156 distorted distorted 1802 1825 1826 1827 1855 P C B 157 distorted distorted 1832 1856 1857 1858 1886 P G B 158 distorted distorted 1863 1887 1888 1889 1920 P G B 159 distorted distorted 1894 1921 1922 1923 1954 P U B 160 distorted distorted 1928 1955 1956 1957 1984 P G B 161 distorted distorted 1962 1985 1986 1987 2018 P G B 162 distorted distorted 1992 2019 2020 2021 2052 P U B 163 distorted distorted 2026 2053 2054 2055 2082 P G B 164 distorted distorted 2060 2083 2084 2085 2116 P A B 165 distorted distorted 2090 2117 2118 2119 2149 P A B 166 distorted distorted 2124 2150 2151 2152 2182 P U B 167 distorted distorted 2157 2183 2184 2185 2212 P G B 168 distorted distorted 2190 2213 2214 2215 2246 P G B 169 distorted distorted 2220 2247 2248 2249 2280 P G B 170 distorted distorted 2254 2281 2282 2283 2314 P A B 171 distorted distorted 2288 2315 2316 2317 2347 P C B 172 distorted distorted 2322 2348 2349 2350 ---------------------------------------------------------------------------------