ID code: '4OQU' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 13 C1' G A 1 beta 8 14 11 36 C1' G A 2 beta 31 37 34 59 C1' A A 3 beta 54 60 57 81 C1' U A 4 beta 76 82 79 101 C1' C A 5 beta 96 102 99 121 C1' A A 6 beta 116 122 119 143 C1' C A 7 beta 138 144 141 163 C1' G A 8 beta 158 164 161 186 C1' A A 9 beta 181 187 184 208 C1' G A 10 beta 203 209 206 231 C1' G A 11 beta 226 232 229 254 C1' G A 12 beta 249 255 252 277 C1' G A 13 beta 272 278 275 300 C1' G A 14 beta 295 301 298 323 C1' A A 15 beta 318 324 321 345 C1' G A 16 beta 340 346 343 368 C1' A A 17 beta 363 369 366 390 C1' C A 18 beta 385 391 388 410 C1' C A 19 beta 405 411 408 430 C1' C A 20 beta 425 431 428 450 C1' C A 21 beta 445 451 448 470 C1' G A 22 beta 465 471 468 493 C1' G A 23 beta 488 494 491 516 C1' C A 24 beta 511 517 514 536 C1' A A 25 beta 531 537 534 558 C1' A A 26 beta 553 559 556 580 C1' C A 27 beta 575 581 578 600 C1' C A 28 beta 595 601 598 620 C1' U A 29 beta 615 621 618 640 C1' G A 30 beta 635 641 638 663 C1' G A 31 beta 658 664 661 686 C1' G A 32 beta 681 687 684 709 C1' A A 33 beta 704 710 707 731 C1' C A 34 beta 726 732 729 751 C1' G A 35 beta 746 752 749 774 C1' G A 36 beta 769 775 772 797 C1' A A 37 beta 792 798 795 819 C1' C A 38 beta 814 820 817 839 C1' A A 39 beta 834 840 837 861 C1' C A 40 beta 856 862 859 881 C1' C A 41 beta 876 882 879 901 C1' C A 42 beta 896 902 899 921 C1' A A 43 beta 916 922 919 943 C1' A A 44 beta 938 944 941 965 C1' G A 45 beta 960 966 963 988 C1' G A 46 beta 983 989 986 1011 C1' U A 47 beta 1006 1012 1009 1031 C1' G A 48 beta 1026 1032 1029 1054 C1' C A 49 beta 1049 1055 1052 1074 C1' U A 50 beta 1069 1075 1072 1094 C1' C A 51 beta 1089 1095 1092 1114 C1' A A 52 beta 1109 1115 1112 1136 C1' C A 53 beta 1131 1137 1134 1156 C1' A A 54 beta 1151 1157 1154 1178 C1' C A 55 beta 1173 1179 1176 1198 C1' C A 56 beta 1193 1199 1196 1218 C1' G A 57 beta 1213 1219 1216 1241 C1' G A 58 beta 1236 1242 1239 1264 C1' A A 59 beta 1259 1265 1262 1286 C1' G A 60 beta 1281 1287 1284 1309 C1' A A 61 beta 1304 1310 1307 1331 C1' C A 62 beta 1326 1332 1329 1351 C1' G A 63 beta 1346 1352 1349 1374 C1' G A 64 beta 1369 1375 1372 1397 C1' U A 65 beta 1392 1398 1395 1417 C1' G A 66 beta 1412 1418 1415 1440 C1' G A 67 beta 1435 1441 1438 1463 C1' A A 68 beta 1458 1464 1461 1485 C1' U A 69 beta 1480 1486 1483 1505 C1' C A 70 beta 1500 1506 1503 1525 C1' C A 71 beta 1520 1526 1523 1545 C1' G A 72 beta 1540 1546 1543 1568 C1' G A 73 beta 1563 1569 1566 1591 C1' C A 74 beta 1586 1592 1589 1611 C1' C A 75 beta 1606 1612 1609 1631 C1' C A 76 beta 1626 1632 1629 1651 C1' G A 77 beta 1646 1652 1649 1674 C1' A A 78 beta 1669 1675 1672 1696 C1' G A 79 beta 1691 1697 1694 1719 C1' A A 80 beta 1714 1720 1717 1741 C1' G A 81 beta 1736 1742 1739 1764 C1' G A 82 beta 1759 1765 1762 1787 C1' G A 83 beta 1782 1788 1785 1810 C1' C A 84 beta 1805 1811 1808 1830 C1' A A 85 beta 1825 1831 1828 1852 C1' A A 86 beta 1847 1853 1850 1874 C1' C A 87 beta 1869 1875 1872 1894 C1' G A 88 beta 1889 1895 1892 1917 C1' A A 89 beta 1912 1918 1915 1939 C1' A A 90 beta 1934 1940 1937 1961 C1' G A 91 beta 1956 1962 1959 1984 C1' G A 92 beta 1979 1985 1982 2007 C1' U A 93 beta 2002 2008 2005 2027 C1' C A 94 beta 2022 2028 2025 2047 C1' C A 95 beta 2042 2048 2045 2067 C1' G A 96 beta 2062 2068 2065 2090 C1' A A 97 beta 2085 2091 2088 2118 C1' SAM A 101 beta 2113 2119 2116 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 11 C2' G A 1 OK 13 9 12 34 C2' G A 2 OK 36 32 35 57 C2' A A 3 OK 59 55 58 79 C2' U A 4 OK 81 77 80 99 C2' C A 5 OK 101 97 100 119 C2' A A 6 OK 121 117 120 141 C2' C A 7 OK 143 139 142 161 C2' G A 8 OK 163 159 162 184 C2' A A 9 OK 186 182 185 206 C2' G A 10 OK 208 204 207 229 C2' G A 11 OK 231 227 230 252 C2' G A 12 OK 254 250 253 275 C2' G A 13 OK 277 273 276 298 C2' G A 14 OK 300 296 299 321 C2' A A 15 OK 323 319 322 343 C2' G A 16 OK 345 341 344 366 C2' A A 17 OK 368 364 367 388 C2' C A 18 OK 390 386 389 408 C2' C A 19 OK 410 406 409 428 C2' C A 20 OK 430 426 429 448 C2' C A 21 OK 450 446 449 468 C2' G A 22 OK 470 466 469 491 C2' G A 23 OK 493 489 492 514 C2' C A 24 OK 516 512 515 534 C2' A A 25 OK 536 532 535 556 C2' A A 26 OK 558 554 557 578 C2' C A 27 OK 580 576 579 598 C2' C A 28 OK 600 596 599 618 C2' U A 29 OK 620 616 619 638 C2' G A 30 OK 640 636 639 661 C2' G A 31 OK 663 659 662 684 C2' G A 32 OK 686 682 685 707 C2' A A 33 OK 709 705 708 729 C2' C A 34 OK 731 727 730 749 C2' G A 35 OK 751 747 750 772 C2' G A 36 OK 774 770 773 795 C2' A A 37 OK 797 793 796 817 C2' C A 38 OK 819 815 818 837 C2' A A 39 OK 839 835 838 859 C2' C A 40 OK 861 857 860 879 C2' C A 41 OK 881 877 880 899 C2' C A 42 OK 901 897 900 919 C2' A A 43 OK 921 917 920 941 C2' A A 44 OK 943 939 942 963 C2' G A 45 OK 965 961 964 986 C2' G A 46 OK 988 984 987 1009 C2' U A 47 OK 1011 1007 1010 1029 C2' G A 48 OK 1031 1027 1030 1052 C2' C A 49 OK 1054 1050 1053 1072 C2' U A 50 OK 1074 1070 1073 1092 C2' C A 51 OK 1094 1090 1093 1112 C2' A A 52 OK 1114 1110 1113 1134 C2' C A 53 OK 1136 1132 1135 1154 C2' A A 54 OK 1156 1152 1155 1176 C2' C A 55 OK 1178 1174 1177 1196 C2' C A 56 OK 1198 1194 1197 1216 C2' G A 57 OK 1218 1214 1217 1239 C2' G A 58 OK 1241 1237 1240 1262 C2' A A 59 OK 1264 1260 1263 1284 C2' G A 60 OK 1286 1282 1285 1307 C2' A A 61 OK 1309 1305 1308 1329 C2' C A 62 OK 1331 1327 1330 1349 C2' G A 63 OK 1351 1347 1350 1372 C2' G A 64 OK 1374 1370 1373 1395 C2' U A 65 OK 1397 1393 1396 1415 C2' G A 66 OK 1417 1413 1416 1438 C2' G A 67 OK 1440 1436 1439 1461 C2' A A 68 OK 1463 1459 1462 1483 C2' U A 69 OK 1485 1481 1484 1503 C2' C A 70 OK 1505 1501 1504 1523 C2' C A 71 OK 1525 1521 1524 1543 C2' G A 72 OK 1545 1541 1544 1566 C2' G A 73 OK 1568 1564 1567 1589 C2' C A 74 OK 1591 1587 1590 1609 C2' C A 75 OK 1611 1607 1610 1629 C2' C A 76 OK 1631 1627 1630 1649 C2' G A 77 OK 1651 1647 1650 1672 C2' A A 78 OK 1674 1670 1673 1694 C2' G A 79 OK 1696 1692 1695 1717 C2' A A 80 OK 1719 1715 1718 1739 C2' G A 81 OK 1741 1737 1740 1762 C2' G A 82 OK 1764 1760 1763 1785 C2' G A 83 OK 1787 1783 1786 1808 C2' C A 84 OK 1810 1806 1809 1828 C2' A A 85 OK 1830 1826 1829 1850 C2' A A 86 OK 1852 1848 1851 1872 C2' C A 87 OK 1874 1870 1873 1892 C2' G A 88 OK 1894 1890 1893 1915 C2' A A 89 OK 1917 1913 1916 1937 C2' A A 90 OK 1939 1935 1938 1959 C2' G A 91 OK 1961 1957 1960 1982 C2' G A 92 OK 1984 1980 1983 2005 C2' U A 93 OK 2007 2003 2006 2025 C2' C A 94 OK 2027 2023 2026 2045 C2' C A 95 OK 2047 2043 2046 2065 C2' G A 96 OK 2067 2063 2066 2088 C2' A A 97 OK 2090 2086 2089 2116 C2' SAM A 101 OK 2118 2114 2117 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 9 C3' G A 1 OK 7 10 11 32 C3' G A 2 OK 30 33 34 55 C3' A A 3 OK 53 56 57 77 C3' U A 4 OK 75 78 79 97 C3' C A 5 OK 95 98 99 117 C3' A A 6 OK 115 118 119 139 C3' C A 7 OK 137 140 141 159 C3' G A 8 OK 157 160 161 182 C3' A A 9 OK 180 183 184 204 C3' G A 10 OK 202 205 206 227 C3' G A 11 OK 225 228 229 250 C3' G A 12 OK 248 251 252 273 C3' G A 13 OK 271 274 275 296 C3' G A 14 OK 294 297 298 319 C3' A A 15 OK 317 320 321 341 C3' G A 16 OK 339 342 343 364 C3' A A 17 OK 362 365 366 386 C3' C A 18 OK 384 387 388 406 C3' C A 19 OK 404 407 408 426 C3' C A 20 OK 424 427 428 446 C3' C A 21 OK 444 447 448 466 C3' G A 22 OK 464 467 468 489 C3' G A 23 OK 487 490 491 512 C3' C A 24 OK 510 513 514 532 C3' A A 25 OK 530 533 534 554 C3' A A 26 OK 552 555 556 576 C3' C A 27 OK 574 577 578 596 C3' C A 28 OK 594 597 598 616 C3' U A 29 OK 614 617 618 636 C3' G A 30 OK 634 637 638 659 C3' G A 31 OK 657 660 661 682 C3' G A 32 OK 680 683 684 705 C3' A A 33 OK 703 706 707 727 C3' C A 34 OK 725 728 729 747 C3' G A 35 OK 745 748 749 770 C3' G A 36 OK 768 771 772 793 C3' A A 37 OK 791 794 795 815 C3' C A 38 OK 813 816 817 835 C3' A A 39 OK 833 836 837 857 C3' C A 40 OK 855 858 859 877 C3' C A 41 OK 875 878 879 897 C3' C A 42 OK 895 898 899 917 C3' A A 43 OK 915 918 919 939 C3' A A 44 OK 937 940 941 961 C3' G A 45 OK 959 962 963 984 C3' G A 46 OK 982 985 986 1007 C3' U A 47 OK 1005 1008 1009 1027 C3' G A 48 OK 1025 1028 1029 1050 C3' C A 49 OK 1048 1051 1052 1070 C3' U A 50 OK 1068 1071 1072 1090 C3' C A 51 OK 1088 1091 1092 1110 C3' A A 52 OK 1108 1111 1112 1132 C3' C A 53 OK 1130 1133 1134 1152 C3' A A 54 OK 1150 1153 1154 1174 C3' C A 55 OK 1172 1175 1176 1194 C3' C A 56 OK 1192 1195 1196 1214 C3' G A 57 OK 1212 1215 1216 1237 C3' G A 58 OK 1235 1238 1239 1260 C3' A A 59 OK 1258 1261 1262 1282 C3' G A 60 OK 1280 1283 1284 1305 C3' A A 61 OK 1303 1306 1307 1327 C3' C A 62 OK 1325 1328 1329 1347 C3' G A 63 OK 1345 1348 1349 1370 C3' G A 64 OK 1368 1371 1372 1393 C3' U A 65 OK 1391 1394 1395 1413 C3' G A 66 OK 1411 1414 1415 1436 C3' G A 67 OK 1434 1437 1438 1459 C3' A A 68 OK 1457 1460 1461 1481 C3' U A 69 OK 1479 1482 1483 1501 C3' C A 70 OK 1499 1502 1503 1521 C3' C A 71 OK 1519 1522 1523 1541 C3' G A 72 OK 1539 1542 1543 1564 C3' G A 73 OK 1562 1565 1566 1587 C3' C A 74 OK 1585 1588 1589 1607 C3' C A 75 OK 1605 1608 1609 1627 C3' C A 76 OK 1625 1628 1629 1647 C3' G A 77 OK 1645 1648 1649 1670 C3' A A 78 OK 1668 1671 1672 1692 C3' G A 79 OK 1690 1693 1694 1715 C3' A A 80 OK 1713 1716 1717 1737 C3' G A 81 OK 1735 1738 1739 1760 C3' G A 82 OK 1758 1761 1762 1783 C3' G A 83 OK 1781 1784 1785 1806 C3' C A 84 OK 1804 1807 1808 1826 C3' A A 85 OK 1824 1827 1828 1848 C3' A A 86 OK 1846 1849 1850 1870 C3' C A 87 OK 1868 1871 1872 1890 C3' G A 88 OK 1888 1891 1892 1913 C3' A A 89 OK 1911 1914 1915 1935 C3' A A 90 OK 1933 1936 1937 1957 C3' G A 91 OK 1955 1958 1959 1980 C3' G A 92 OK 1978 1981 1982 2003 C3' U A 93 OK 2001 2004 2005 2023 C3' C A 94 OK 2021 2024 2025 2043 C3' C A 95 OK 2041 2044 2045 2063 C3' G A 96 OK 2061 2064 2065 2086 C3' A A 97 OK 2084 2087 2088 2114 C3' SAM A 101 OK 2112 2115 2116 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 7 C4' G A 1 OK 9 6 8 30 C4' G A 2 OK 32 29 31 53 C4' A A 3 OK 55 52 54 75 C4' U A 4 OK 77 74 76 95 C4' C A 5 OK 97 94 96 115 C4' A A 6 OK 117 114 116 137 C4' C A 7 OK 139 136 138 157 C4' G A 8 OK 159 156 158 180 C4' A A 9 OK 182 179 181 202 C4' G A 10 OK 204 201 203 225 C4' G A 11 OK 227 224 226 248 C4' G A 12 OK 250 247 249 271 C4' G A 13 OK 273 270 272 294 C4' G A 14 OK 296 293 295 317 C4' A A 15 OK 319 316 318 339 C4' G A 16 OK 341 338 340 362 C4' A A 17 OK 364 361 363 384 C4' C A 18 OK 386 383 385 404 C4' C A 19 OK 406 403 405 424 C4' C A 20 OK 426 423 425 444 C4' C A 21 OK 446 443 445 464 C4' G A 22 OK 466 463 465 487 C4' G A 23 OK 489 486 488 510 C4' C A 24 OK 512 509 511 530 C4' A A 25 OK 532 529 531 552 C4' A A 26 OK 554 551 553 574 C4' C A 27 OK 576 573 575 594 C4' C A 28 OK 596 593 595 614 C4' U A 29 OK 616 613 615 634 C4' G A 30 OK 636 633 635 657 C4' G A 31 OK 659 656 658 680 C4' G A 32 OK 682 679 681 703 C4' A A 33 OK 705 702 704 725 C4' C A 34 OK 727 724 726 745 C4' G A 35 OK 747 744 746 768 C4' G A 36 OK 770 767 769 791 C4' A A 37 OK 793 790 792 813 C4' C A 38 OK 815 812 814 833 C4' A A 39 OK 835 832 834 855 C4' C A 40 OK 857 854 856 875 C4' C A 41 OK 877 874 876 895 C4' C A 42 OK 897 894 896 915 C4' A A 43 OK 917 914 916 937 C4' A A 44 OK 939 936 938 959 C4' G A 45 OK 961 958 960 982 C4' G A 46 OK 984 981 983 1005 C4' U A 47 OK 1007 1004 1006 1025 C4' G A 48 OK 1027 1024 1026 1048 C4' C A 49 OK 1050 1047 1049 1068 C4' U A 50 OK 1070 1067 1069 1088 C4' C A 51 OK 1090 1087 1089 1108 C4' A A 52 OK 1110 1107 1109 1130 C4' C A 53 OK 1132 1129 1131 1150 C4' A A 54 OK 1152 1149 1151 1172 C4' C A 55 OK 1174 1171 1173 1192 C4' C A 56 OK 1194 1191 1193 1212 C4' G A 57 OK 1214 1211 1213 1235 C4' G A 58 OK 1237 1234 1236 1258 C4' A A 59 OK 1260 1257 1259 1280 C4' G A 60 OK 1282 1279 1281 1303 C4' A A 61 OK 1305 1302 1304 1325 C4' C A 62 OK 1327 1324 1326 1345 C4' G A 63 OK 1347 1344 1346 1368 C4' G A 64 OK 1370 1367 1369 1391 C4' U A 65 OK 1393 1390 1392 1411 C4' G A 66 OK 1413 1410 1412 1434 C4' G A 67 OK 1436 1433 1435 1457 C4' A A 68 OK 1459 1456 1458 1479 C4' U A 69 OK 1481 1478 1480 1499 C4' C A 70 OK 1501 1498 1500 1519 C4' C A 71 OK 1521 1518 1520 1539 C4' G A 72 OK 1541 1538 1540 1562 C4' G A 73 OK 1564 1561 1563 1585 C4' C A 74 OK 1587 1584 1586 1605 C4' C A 75 OK 1607 1604 1606 1625 C4' C A 76 OK 1627 1624 1626 1645 C4' G A 77 OK 1647 1644 1646 1668 C4' A A 78 OK 1670 1667 1669 1690 C4' G A 79 OK 1692 1689 1691 1713 C4' A A 80 OK 1715 1712 1714 1735 C4' G A 81 OK 1737 1734 1736 1758 C4' G A 82 OK 1760 1757 1759 1781 C4' G A 83 OK 1783 1780 1782 1804 C4' C A 84 OK 1806 1803 1805 1824 C4' A A 85 OK 1826 1823 1825 1846 C4' A A 86 OK 1848 1845 1847 1868 C4' C A 87 OK 1870 1867 1869 1888 C4' G A 88 OK 1890 1887 1889 1911 C4' A A 89 OK 1913 1910 1912 1933 C4' A A 90 OK 1935 1932 1934 1955 C4' G A 91 OK 1957 1954 1956 1978 C4' G A 92 OK 1980 1977 1979 2001 C4' U A 93 OK 2003 2000 2002 2021 C4' C A 94 OK 2023 2020 2022 2041 C4' C A 95 OK 2043 2040 2042 2061 C4' G A 96 OK 2063 2060 2062 2084 C4' A A 97 OK 2086 2083 2085 2112 C4' SAM A 101 OK 2114 2111 2113 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 6 C5' G A 1 5 7 29 C5' G A 2 28 30 52 C5' A A 3 51 53 74 C5' U A 4 73 75 94 C5' C A 5 93 95 114 C5' A A 6 113 115 136 C5' C A 7 135 137 156 C5' G A 8 155 157 179 C5' A A 9 178 180 201 C5' G A 10 200 202 224 C5' G A 11 223 225 247 C5' G A 12 246 248 270 C5' G A 13 269 271 293 C5' G A 14 292 294 316 C5' A A 15 315 317 338 C5' G A 16 337 339 361 C5' A A 17 360 362 383 C5' C A 18 382 384 403 C5' C A 19 402 404 423 C5' C A 20 422 424 443 C5' C A 21 442 444 463 C5' G A 22 462 464 486 C5' G A 23 485 487 509 C5' C A 24 508 510 529 C5' A A 25 528 530 551 C5' A A 26 550 552 573 C5' C A 27 572 574 593 C5' C A 28 592 594 613 C5' U A 29 612 614 633 C5' G A 30 632 634 656 C5' G A 31 655 657 679 C5' G A 32 678 680 702 C5' A A 33 701 703 724 C5' C A 34 723 725 744 C5' G A 35 743 745 767 C5' G A 36 766 768 790 C5' A A 37 789 791 812 C5' C A 38 811 813 832 C5' A A 39 831 833 854 C5' C A 40 853 855 874 C5' C A 41 873 875 894 C5' C A 42 893 895 914 C5' A A 43 913 915 936 C5' A A 44 935 937 958 C5' G A 45 957 959 981 C5' G A 46 980 982 1004 C5' U A 47 1003 1005 1024 C5' G A 48 1023 1025 1047 C5' C A 49 1046 1048 1067 C5' U A 50 1066 1068 1087 C5' C A 51 1086 1088 1107 C5' A A 52 1106 1108 1129 C5' C A 53 1128 1130 1149 C5' A A 54 1148 1150 1171 C5' C A 55 1170 1172 1191 C5' C A 56 1190 1192 1211 C5' G A 57 1210 1212 1234 C5' G A 58 1233 1235 1257 C5' A A 59 1256 1258 1279 C5' G A 60 1278 1280 1302 C5' A A 61 1301 1303 1324 C5' C A 62 1323 1325 1344 C5' G A 63 1343 1345 1367 C5' G A 64 1366 1368 1390 C5' U A 65 1389 1391 1410 C5' G A 66 1409 1411 1433 C5' G A 67 1432 1434 1456 C5' A A 68 1455 1457 1478 C5' U A 69 1477 1479 1498 C5' C A 70 1497 1499 1518 C5' C A 71 1517 1519 1538 C5' G A 72 1537 1539 1561 C5' G A 73 1560 1562 1584 C5' C A 74 1583 1585 1604 C5' C A 75 1603 1605 1624 C5' C A 76 1623 1625 1644 C5' G A 77 1643 1645 1667 C5' A A 78 1666 1668 1689 C5' G A 79 1688 1690 1712 C5' A A 80 1711 1713 1734 C5' G A 81 1733 1735 1757 C5' G A 82 1756 1758 1780 C5' G A 83 1779 1781 1803 C5' C A 84 1802 1804 1823 C5' A A 85 1822 1824 1845 C5' A A 86 1844 1846 1867 C5' C A 87 1866 1868 1887 C5' G A 88 1886 1888 1910 C5' A A 89 1909 1911 1932 C5' A A 90 1931 1933 1954 C5' G A 91 1953 1955 1977 C5' G A 92 1976 1978 2000 C5' U A 93 1999 2001 2020 C5' C A 94 2019 2021 2040 C5' C A 95 2039 2041 2060 C5' G A 96 2059 2061 2083 C5' A A 97 2082 2084 2111 C5' SAM A 101 2112 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 2 P G A 1 distorted distorted 3 4 5 25 P G A 2 distorted distorted 10 26 27 28 48 P A A 3 distorted distorted 33 49 50 51 70 P U A 4 distorted distorted 56 71 72 73 90 P C A 5 distorted distorted 78 91 92 93 110 P A A 6 distorted distorted 98 111 112 113 132 P C A 7 distorted distorted 118 133 134 135 152 P G A 8 distorted distorted 140 153 154 155 175 P A A 9 distorted distorted 160 176 177 178 197 P G A 10 distorted distorted 183 198 199 200 220 P G A 11 distorted distorted 205 221 222 223 243 P G A 12 distorted distorted 228 244 245 246 266 P G A 13 distorted distorted 251 267 268 269 289 P G A 14 distorted distorted 274 290 291 292 312 P A A 15 distorted distorted 297 313 314 315 334 P G A 16 distorted distorted 320 335 336 337 357 P A A 17 distorted distorted 342 358 359 360 379 P C A 18 distorted distorted 365 380 381 382 399 P C A 19 distorted distorted 387 400 401 402 419 P C A 20 distorted distorted 407 420 421 422 439 P C A 21 distorted distorted 427 440 441 442 459 P G A 22 distorted distorted 447 460 461 462 482 P G A 23 distorted distorted 467 483 484 485 505 P C A 24 distorted distorted 490 506 507 508 525 P A A 25 distorted distorted 513 526 527 528 547 P A A 26 distorted distorted 533 548 549 550 569 P C A 27 distorted distorted 555 570 571 572 589 P C A 28 distorted distorted 577 590 591 592 609 P U A 29 distorted distorted 597 610 611 612 629 P G A 30 distorted distorted 617 630 631 632 652 P G A 31 distorted distorted 637 653 654 655 675 P G A 32 distorted distorted 660 676 677 678 698 P A A 33 distorted distorted 683 699 700 701 720 P C A 34 distorted distorted 706 721 722 723 740 P G A 35 distorted distorted 728 741 742 743 763 P G A 36 distorted distorted 748 764 765 766 786 P A A 37 distorted distorted 771 787 788 789 808 P C A 38 distorted distorted 794 809 810 811 828 P A A 39 distorted distorted 816 829 830 831 850 P C A 40 distorted distorted 836 851 852 853 870 P C A 41 distorted distorted 858 871 872 873 890 P C A 42 distorted distorted 878 891 892 893 910 P A A 43 distorted distorted 898 911 912 913 932 P A A 44 distorted distorted 918 933 934 935 954 P G A 45 distorted distorted 940 955 956 957 977 P G A 46 distorted distorted 962 978 979 980 1000 P U A 47 distorted distorted 985 1001 1002 1003 1020 P G A 48 distorted distorted 1008 1021 1022 1023 1043 P C A 49 distorted distorted 1028 1044 1045 1046 1063 P U A 50 distorted distorted 1051 1064 1065 1066 1083 P C A 51 distorted distorted 1071 1084 1085 1086 1103 P A A 52 distorted distorted 1091 1104 1105 1106 1125 P C A 53 distorted distorted 1111 1126 1127 1128 1145 P A A 54 distorted distorted 1133 1146 1147 1148 1167 P C A 55 distorted distorted 1153 1168 1169 1170 1187 P C A 56 distorted distorted 1175 1188 1189 1190 1207 P G A 57 distorted distorted 1195 1208 1209 1210 1230 P G A 58 distorted distorted 1215 1231 1232 1233 1253 P A A 59 distorted distorted 1238 1254 1255 1256 1275 P G A 60 distorted distorted 1261 1276 1277 1278 1298 P A A 61 distorted distorted 1283 1299 1300 1301 1320 P C A 62 distorted distorted 1306 1321 1322 1323 1340 P G A 63 distorted distorted 1328 1341 1342 1343 1363 P G A 64 distorted distorted 1348 1364 1365 1366 1386 P U A 65 distorted distorted 1371 1387 1388 1389 1406 P G A 66 distorted distorted 1394 1407 1408 1409 1429 P G A 67 distorted distorted 1414 1430 1431 1432 1452 P A A 68 distorted distorted 1437 1453 1454 1455 1474 P U A 69 distorted distorted 1460 1475 1476 1477 1494 P C A 70 distorted distorted 1482 1495 1496 1497 1514 P C A 71 distorted distorted 1502 1515 1516 1517 1534 P G A 72 distorted distorted 1522 1535 1536 1537 1557 P G A 73 distorted distorted 1542 1558 1559 1560 1580 P C A 74 distorted distorted 1565 1581 1582 1583 1600 P C A 75 distorted distorted 1588 1601 1602 1603 1620 P C A 76 distorted distorted 1608 1621 1622 1623 1640 P G A 77 distorted distorted 1628 1641 1642 1643 1663 P A A 78 distorted distorted 1648 1664 1665 1666 1685 P G A 79 distorted distorted 1671 1686 1687 1688 1708 P A A 80 distorted distorted 1693 1709 1710 1711 1730 P G A 81 distorted distorted 1716 1731 1732 1733 1753 P G A 82 distorted distorted 1738 1754 1755 1756 1776 P G A 83 distorted distorted 1761 1777 1778 1779 1799 P C A 84 distorted distorted 1784 1800 1801 1802 1819 P A A 85 distorted distorted 1807 1820 1821 1822 1841 P A A 86 distorted distorted 1827 1842 1843 1844 1863 P C A 87 distorted distorted 1849 1864 1865 1866 1883 P G A 88 distorted distorted 1871 1884 1885 1886 1906 P A A 89 distorted distorted 1891 1907 1908 1909 1928 P A A 90 distorted distorted 1914 1929 1930 1931 1950 P G A 91 distorted distorted 1936 1951 1952 1953 1973 P G A 92 distorted distorted 1958 1974 1975 1976 1996 P U A 93 distorted distorted 1981 1997 1998 1999 2016 P C A 94 distorted distorted 2004 2017 2018 2019 2036 P C A 95 distorted distorted 2024 2037 2038 2039 2056 P G A 96 distorted distorted 2044 2057 2058 2059 2079 P A A 97 distorted distorted 2064 2080 2081 2082 ---------------------------------------------------------------------------------