ID code: '4O26' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 3863 C1' G E 170 beta 3858 3864 3861 3886 C1' G E 171 beta 3881 3887 3884 3909 C1' A E 172 beta 3904 3910 3907 3931 C1' A E 173 beta 3926 3932 3929 3953 C1' C E 174 beta 3948 3954 3951 3973 C1' G E 175 beta 3968 3974 3971 3996 C1' C E 176 beta 3991 3997 3994 4016 C1' C E 177 beta 4011 4017 4014 4036 C1' G E 178 beta 4031 4037 4034 4059 C1' C E 179 beta 4054 4060 4057 4079 C1' G E 180 beta 4074 4080 4077 4102 C1' G E 181 beta 4097 4103 4100 4125 C1' U E 182 beta 4120 4126 4123 4145 C1' C E 183 beta 4140 4146 4143 4165 C1' A E 184 beta 4160 4166 4163 4187 C1' G E 185 beta 4182 4188 4185 4210 C1' C E 186 beta 4205 4211 4208 4230 C1' U E 187 beta 4225 4231 4228 4250 C1' C E 188 beta 4245 4251 4248 4270 C1' G E 189 beta 4265 4271 4268 4293 C1' G E 190 beta 4288 4294 4291 4316 C1' C E 191 beta 4311 4317 4314 4336 C1' U E 192 beta 4331 4337 4334 4356 C1' G E 193 beta 4351 4357 4354 4379 C1' C E 194 beta 4374 4380 4377 4399 C1' U E 195 beta 4394 4400 4397 4419 C1' G E 196 beta 4414 4420 4417 4442 C1' C E 197 beta 4437 4443 4440 4462 C1' G E 198 beta 4457 4463 4460 4485 C1' A E 199 beta 4480 4486 4483 4507 C1' A E 200 beta 4502 4508 4505 4529 C1' G E 201 beta 4524 4530 4527 4552 C1' A E 202 beta 4547 4553 4550 4574 C1' G E 203 beta 4569 4575 4572 4597 C1' U E 204 beta 4592 4598 4595 4617 C1' C E 209 beta 4612 4618 4615 4637 C1' U E 210 beta 4632 4638 4635 4657 C1' C E 211 beta 4652 4658 4655 4677 C1' U E 212 beta 4672 4678 4675 4697 C1' G E 213 beta 4692 4698 4695 4720 C1' U E 214 beta 4715 4721 4718 4740 C1' U E 215 beta 4735 4741 4738 4760 C1' G E 216 beta 4755 4761 4758 4783 C1' U E 217 beta 4778 4784 4781 4803 C1' U E 218 beta 4798 4804 4801 4823 C1' C E 219 beta 4818 4824 4821 4843 C1' C E 220 beta 4838 4844 4841 4864 C1' G F 170 beta 4859 4865 4862 4887 C1' G F 171 beta 4882 4888 4885 4910 C1' A F 172 beta 4905 4911 4908 4932 C1' A F 173 beta 4927 4933 4930 4954 C1' C F 174 beta 4949 4955 4952 4974 C1' G F 175 beta 4969 4975 4972 4997 C1' C F 176 beta 4992 4998 4995 5017 C1' C F 177 beta 5012 5018 5015 5037 C1' G F 178 beta 5032 5038 5035 5060 C1' C F 179 beta 5055 5061 5058 5080 C1' G F 180 beta 5075 5081 5078 5103 C1' G F 181 beta 5098 5104 5101 5126 C1' U F 182 beta 5121 5127 5124 5146 C1' C F 183 beta 5141 5147 5144 5166 C1' A F 184 beta 5161 5167 5164 5188 C1' G F 185 beta 5183 5189 5186 5211 C1' C F 186 beta 5206 5212 5209 5231 C1' U F 187 beta 5226 5232 5229 5251 C1' C F 188 beta 5246 5252 5249 5271 C1' G F 189 beta 5266 5272 5269 5294 C1' G F 190 beta 5289 5295 5292 5317 C1' C F 191 beta 5312 5318 5315 5337 C1' U F 192 beta 5332 5338 5335 5357 C1' G F 193 beta 5352 5358 5355 5380 C1' C F 194 beta 5375 5381 5378 5400 C1' U F 195 beta 5395 5401 5398 5420 C1' G F 196 beta 5415 5421 5418 5443 C1' C F 197 beta 5438 5444 5441 5463 C1' G F 198 beta 5458 5464 5461 5486 C1' A F 199 beta 5481 5487 5484 5508 C1' A F 200 beta 5503 5509 5506 5530 C1' G F 201 beta 5525 5531 5528 5553 C1' A F 202 beta 5548 5554 5551 5575 C1' G F 203 beta 5570 5576 5573 5598 C1' U F 204 beta 5593 5599 5596 5618 C1' C F 209 beta 5613 5619 5616 5638 C1' U F 210 beta 5633 5639 5636 5658 C1' C F 211 beta 5653 5659 5656 5678 C1' U F 212 beta 5673 5679 5676 5698 C1' G F 213 beta 5693 5699 5696 5721 C1' U F 214 beta 5716 5722 5719 5741 C1' U F 215 beta 5736 5742 5739 5761 C1' G F 216 beta 5756 5762 5759 5784 C1' U F 217 beta 5779 5785 5782 5804 C1' U F 218 beta 5799 5805 5802 5824 C1' C F 219 beta 5819 5825 5822 5844 C1' C F 220 beta 5839 5845 5842 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 3861 C2' G E 170 OK 3863 3859 3862 3884 C2' G E 171 OK 3886 3882 3885 3907 C2' A E 172 OK 3909 3905 3908 3929 C2' A E 173 OK 3931 3927 3930 3951 C2' C E 174 OK 3953 3949 3952 3971 C2' G E 175 OK 3973 3969 3972 3994 C2' C E 176 OK 3996 3992 3995 4014 C2' C E 177 OK 4016 4012 4015 4034 C2' G E 178 OK 4036 4032 4035 4057 C2' C E 179 OK 4059 4055 4058 4077 C2' G E 180 OK 4079 4075 4078 4100 C2' G E 181 OK 4102 4098 4101 4123 C2' U E 182 OK 4125 4121 4124 4143 C2' C E 183 OK 4145 4141 4144 4163 C2' A E 184 OK 4165 4161 4164 4185 C2' G E 185 OK 4187 4183 4186 4208 C2' C E 186 OK 4210 4206 4209 4228 C2' U E 187 OK 4230 4226 4229 4248 C2' C E 188 OK 4250 4246 4249 4268 C2' G E 189 OK 4270 4266 4269 4291 C2' G E 190 OK 4293 4289 4292 4314 C2' C E 191 OK 4316 4312 4315 4334 C2' U E 192 OK 4336 4332 4335 4354 C2' G E 193 OK 4356 4352 4355 4377 C2' C E 194 OK 4379 4375 4378 4397 C2' U E 195 OK 4399 4395 4398 4417 C2' G E 196 OK 4419 4415 4418 4440 C2' C E 197 OK 4442 4438 4441 4460 C2' G E 198 OK 4462 4458 4461 4483 C2' A E 199 OK 4485 4481 4484 4505 C2' A E 200 OK 4507 4503 4506 4527 C2' G E 201 OK 4529 4525 4528 4550 C2' A E 202 OK 4552 4548 4551 4572 C2' G E 203 OK 4574 4570 4573 4595 C2' U E 204 OK 4597 4593 4596 4615 C2' C E 209 OK 4617 4613 4616 4635 C2' U E 210 OK 4637 4633 4636 4655 C2' C E 211 OK 4657 4653 4656 4675 C2' U E 212 OK 4677 4673 4676 4695 C2' G E 213 OK 4697 4693 4696 4718 C2' U E 214 OK 4720 4716 4719 4738 C2' U E 215 OK 4740 4736 4739 4758 C2' G E 216 OK 4760 4756 4759 4781 C2' U E 217 OK 4783 4779 4782 4801 C2' U E 218 OK 4803 4799 4802 4821 C2' C E 219 OK 4823 4819 4822 4841 C2' C E 220 OK 4843 4839 4842 4862 C2' G F 170 OK 4864 4860 4863 4885 C2' G F 171 OK 4887 4883 4886 4908 C2' A F 172 OK 4910 4906 4909 4930 C2' A F 173 OK 4932 4928 4931 4952 C2' C F 174 OK 4954 4950 4953 4972 C2' G F 175 OK 4974 4970 4973 4995 C2' C F 176 OK 4997 4993 4996 5015 C2' C F 177 OK 5017 5013 5016 5035 C2' G F 178 OK 5037 5033 5036 5058 C2' C F 179 OK 5060 5056 5059 5078 C2' G F 180 OK 5080 5076 5079 5101 C2' G F 181 OK 5103 5099 5102 5124 C2' U F 182 OK 5126 5122 5125 5144 C2' C F 183 OK 5146 5142 5145 5164 C2' A F 184 OK 5166 5162 5165 5186 C2' G F 185 OK 5188 5184 5187 5209 C2' C F 186 OK 5211 5207 5210 5229 C2' U F 187 OK 5231 5227 5230 5249 C2' C F 188 OK 5251 5247 5250 5269 C2' G F 189 OK 5271 5267 5270 5292 C2' G F 190 OK 5294 5290 5293 5315 C2' C F 191 OK 5317 5313 5316 5335 C2' U F 192 OK 5337 5333 5336 5355 C2' G F 193 OK 5357 5353 5356 5378 C2' C F 194 OK 5380 5376 5379 5398 C2' U F 195 OK 5400 5396 5399 5418 C2' G F 196 OK 5420 5416 5419 5441 C2' C F 197 OK 5443 5439 5442 5461 C2' G F 198 OK 5463 5459 5462 5484 C2' A F 199 OK 5486 5482 5485 5506 C2' A F 200 OK 5508 5504 5507 5528 C2' G F 201 OK 5530 5526 5529 5551 C2' A F 202 OK 5553 5549 5552 5573 C2' G F 203 OK 5575 5571 5574 5596 C2' U F 204 OK 5598 5594 5597 5616 C2' C F 209 OK 5618 5614 5617 5636 C2' U F 210 OK 5638 5634 5637 5656 C2' C F 211 OK 5658 5654 5657 5676 C2' U F 212 OK 5678 5674 5677 5696 C2' G F 213 OK 5698 5694 5697 5719 C2' U F 214 OK 5721 5717 5720 5739 C2' U F 215 OK 5741 5737 5740 5759 C2' G F 216 OK 5761 5757 5760 5782 C2' U F 217 OK 5784 5780 5783 5802 C2' U F 218 OK 5804 5800 5803 5822 C2' C F 219 OK 5824 5820 5823 5842 C2' C F 220 OK 5844 5840 5843 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 3859 C3' G E 170 OK 3857 3860 3861 3882 C3' G E 171 OK 3880 3883 3884 3905 C3' A E 172 OK 3903 3906 3907 3927 C3' A E 173 OK 3925 3928 3929 3949 C3' C E 174 OK 3947 3950 3951 3969 C3' G E 175 OK 3967 3970 3971 3992 C3' C E 176 OK 3990 3993 3994 4012 C3' C E 177 OK 4010 4013 4014 4032 C3' G E 178 OK 4030 4033 4034 4055 C3' C E 179 OK 4053 4056 4057 4075 C3' G E 180 OK 4073 4076 4077 4098 C3' G E 181 OK 4096 4099 4100 4121 C3' U E 182 OK 4119 4122 4123 4141 C3' C E 183 OK 4139 4142 4143 4161 C3' A E 184 OK 4159 4162 4163 4183 C3' G E 185 OK 4181 4184 4185 4206 C3' C E 186 OK 4204 4207 4208 4226 C3' U E 187 OK 4224 4227 4228 4246 C3' C E 188 OK 4244 4247 4248 4266 C3' G E 189 OK 4264 4267 4268 4289 C3' G E 190 OK 4287 4290 4291 4312 C3' C E 191 OK 4310 4313 4314 4332 C3' U E 192 OK 4330 4333 4334 4352 C3' G E 193 OK 4350 4353 4354 4375 C3' C E 194 OK 4373 4376 4377 4395 C3' U E 195 OK 4393 4396 4397 4415 C3' G E 196 OK 4413 4416 4417 4438 C3' C E 197 OK 4436 4439 4440 4458 C3' G E 198 OK 4456 4459 4460 4481 C3' A E 199 OK 4479 4482 4483 4503 C3' A E 200 OK 4501 4504 4505 4525 C3' G E 201 OK 4523 4526 4527 4548 C3' A E 202 OK 4546 4549 4550 4570 C3' G E 203 OK 4568 4571 4572 4593 C3' U E 204 OK 4591 4594 4595 4613 C3' C E 209 OK 4611 4614 4615 4633 C3' U E 210 OK 4631 4634 4635 4653 C3' C E 211 OK 4651 4654 4655 4673 C3' U E 212 OK 4671 4674 4675 4693 C3' G E 213 OK 4691 4694 4695 4716 C3' U E 214 OK 4714 4717 4718 4736 C3' U E 215 OK 4734 4737 4738 4756 C3' G E 216 OK 4754 4757 4758 4779 C3' U E 217 OK 4777 4780 4781 4799 C3' U E 218 OK 4797 4800 4801 4819 C3' C E 219 OK 4817 4820 4821 4839 C3' C E 220 OK 4837 4840 4841 4860 C3' G F 170 OK 4858 4861 4862 4883 C3' G F 171 OK 4881 4884 4885 4906 C3' A F 172 OK 4904 4907 4908 4928 C3' A F 173 OK 4926 4929 4930 4950 C3' C F 174 OK 4948 4951 4952 4970 C3' G F 175 OK 4968 4971 4972 4993 C3' C F 176 OK 4991 4994 4995 5013 C3' C F 177 OK 5011 5014 5015 5033 C3' G F 178 OK 5031 5034 5035 5056 C3' C F 179 OK 5054 5057 5058 5076 C3' G F 180 OK 5074 5077 5078 5099 C3' G F 181 OK 5097 5100 5101 5122 C3' U F 182 OK 5120 5123 5124 5142 C3' C F 183 OK 5140 5143 5144 5162 C3' A F 184 OK 5160 5163 5164 5184 C3' G F 185 OK 5182 5185 5186 5207 C3' C F 186 OK 5205 5208 5209 5227 C3' U F 187 OK 5225 5228 5229 5247 C3' C F 188 OK 5245 5248 5249 5267 C3' G F 189 OK 5265 5268 5269 5290 C3' G F 190 OK 5288 5291 5292 5313 C3' C F 191 OK 5311 5314 5315 5333 C3' U F 192 OK 5331 5334 5335 5353 C3' G F 193 OK 5351 5354 5355 5376 C3' C F 194 OK 5374 5377 5378 5396 C3' U F 195 OK 5394 5397 5398 5416 C3' G F 196 OK 5414 5417 5418 5439 C3' C F 197 OK 5437 5440 5441 5459 C3' G F 198 OK 5457 5460 5461 5482 C3' A F 199 OK 5480 5483 5484 5504 C3' A F 200 OK 5502 5505 5506 5526 C3' G F 201 OK 5524 5527 5528 5549 C3' A F 202 OK 5547 5550 5551 5571 C3' G F 203 OK 5569 5572 5573 5594 C3' U F 204 OK 5592 5595 5596 5614 C3' C F 209 OK 5612 5615 5616 5634 C3' U F 210 OK 5632 5635 5636 5654 C3' C F 211 OK 5652 5655 5656 5674 C3' U F 212 OK 5672 5675 5676 5694 C3' G F 213 OK 5692 5695 5696 5717 C3' U F 214 OK 5715 5718 5719 5737 C3' U F 215 OK 5735 5738 5739 5757 C3' G F 216 OK 5755 5758 5759 5780 C3' U F 217 OK 5778 5781 5782 5800 C3' U F 218 OK 5798 5801 5802 5820 C3' C F 219 OK 5818 5821 5822 5840 C3' C F 220 OK 5838 5841 5842 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 3857 C4' G E 170 OK 3859 3856 3858 3880 C4' G E 171 OK 3882 3879 3881 3903 C4' A E 172 OK 3905 3902 3904 3925 C4' A E 173 OK 3927 3924 3926 3947 C4' C E 174 OK 3949 3946 3948 3967 C4' G E 175 OK 3969 3966 3968 3990 C4' C E 176 OK 3992 3989 3991 4010 C4' C E 177 OK 4012 4009 4011 4030 C4' G E 178 OK 4032 4029 4031 4053 C4' C E 179 OK 4055 4052 4054 4073 C4' G E 180 OK 4075 4072 4074 4096 C4' G E 181 OK 4098 4095 4097 4119 C4' U E 182 OK 4121 4118 4120 4139 C4' C E 183 OK 4141 4138 4140 4159 C4' A E 184 OK 4161 4158 4160 4181 C4' G E 185 OK 4183 4180 4182 4204 C4' C E 186 OK 4206 4203 4205 4224 C4' U E 187 OK 4226 4223 4225 4244 C4' C E 188 OK 4246 4243 4245 4264 C4' G E 189 OK 4266 4263 4265 4287 C4' G E 190 OK 4289 4286 4288 4310 C4' C E 191 OK 4312 4309 4311 4330 C4' U E 192 OK 4332 4329 4331 4350 C4' G E 193 OK 4352 4349 4351 4373 C4' C E 194 OK 4375 4372 4374 4393 C4' U E 195 OK 4395 4392 4394 4413 C4' G E 196 OK 4415 4412 4414 4436 C4' C E 197 OK 4438 4435 4437 4456 C4' G E 198 OK 4458 4455 4457 4479 C4' A E 199 OK 4481 4478 4480 4501 C4' A E 200 OK 4503 4500 4502 4523 C4' G E 201 OK 4525 4522 4524 4546 C4' A E 202 OK 4548 4545 4547 4568 C4' G E 203 OK 4570 4567 4569 4591 C4' U E 204 OK 4593 4590 4592 4611 C4' C E 209 OK 4613 4610 4612 4631 C4' U E 210 OK 4633 4630 4632 4651 C4' C E 211 OK 4653 4650 4652 4671 C4' U E 212 OK 4673 4670 4672 4691 C4' G E 213 OK 4693 4690 4692 4714 C4' U E 214 OK 4716 4713 4715 4734 C4' U E 215 OK 4736 4733 4735 4754 C4' G E 216 OK 4756 4753 4755 4777 C4' U E 217 OK 4779 4776 4778 4797 C4' U E 218 OK 4799 4796 4798 4817 C4' C E 219 OK 4819 4816 4818 4837 C4' C E 220 OK 4839 4836 4838 4858 C4' G F 170 OK 4860 4857 4859 4881 C4' G F 171 OK 4883 4880 4882 4904 C4' A F 172 OK 4906 4903 4905 4926 C4' A F 173 OK 4928 4925 4927 4948 C4' C F 174 OK 4950 4947 4949 4968 C4' G F 175 OK 4970 4967 4969 4991 C4' C F 176 OK 4993 4990 4992 5011 C4' C F 177 OK 5013 5010 5012 5031 C4' G F 178 OK 5033 5030 5032 5054 C4' C F 179 OK 5056 5053 5055 5074 C4' G F 180 OK 5076 5073 5075 5097 C4' G F 181 OK 5099 5096 5098 5120 C4' U F 182 OK 5122 5119 5121 5140 C4' C F 183 OK 5142 5139 5141 5160 C4' A F 184 OK 5162 5159 5161 5182 C4' G F 185 OK 5184 5181 5183 5205 C4' C F 186 OK 5207 5204 5206 5225 C4' U F 187 OK 5227 5224 5226 5245 C4' C F 188 OK 5247 5244 5246 5265 C4' G F 189 OK 5267 5264 5266 5288 C4' G F 190 OK 5290 5287 5289 5311 C4' C F 191 OK 5313 5310 5312 5331 C4' U F 192 OK 5333 5330 5332 5351 C4' G F 193 OK 5353 5350 5352 5374 C4' C F 194 OK 5376 5373 5375 5394 C4' U F 195 OK 5396 5393 5395 5414 C4' G F 196 OK 5416 5413 5415 5437 C4' C F 197 OK 5439 5436 5438 5457 C4' G F 198 OK 5459 5456 5458 5480 C4' A F 199 OK 5482 5479 5481 5502 C4' A F 200 OK 5504 5501 5503 5524 C4' G F 201 OK 5526 5523 5525 5547 C4' A F 202 OK 5549 5546 5548 5569 C4' G F 203 OK 5571 5568 5570 5592 C4' U F 204 OK 5594 5591 5593 5612 C4' C F 209 OK 5614 5611 5613 5632 C4' U F 210 OK 5634 5631 5633 5652 C4' C F 211 OK 5654 5651 5653 5672 C4' U F 212 OK 5674 5671 5673 5692 C4' G F 213 OK 5694 5691 5693 5715 C4' U F 214 OK 5717 5714 5716 5735 C4' U F 215 OK 5737 5734 5736 5755 C4' G F 216 OK 5757 5754 5756 5778 C4' U F 217 OK 5780 5777 5779 5798 C4' U F 218 OK 5800 5797 5799 5818 C4' C F 219 OK 5820 5817 5819 5838 C4' C F 220 OK 5840 5837 5839 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 3856 C5' G E 170 3855 3857 3879 C5' G E 171 3878 3880 3902 C5' A E 172 3901 3903 3924 C5' A E 173 3923 3925 3946 C5' C E 174 3945 3947 3966 C5' G E 175 3965 3967 3989 C5' C E 176 3988 3990 4009 C5' C E 177 4008 4010 4029 C5' G E 178 4028 4030 4052 C5' C E 179 4051 4053 4072 C5' G E 180 4071 4073 4095 C5' G E 181 4094 4096 4118 C5' U E 182 4117 4119 4138 C5' C E 183 4137 4139 4158 C5' A E 184 4157 4159 4180 C5' G E 185 4179 4181 4203 C5' C E 186 4202 4204 4223 C5' U E 187 4222 4224 4243 C5' C E 188 4242 4244 4263 C5' G E 189 4262 4264 4286 C5' G E 190 4285 4287 4309 C5' C E 191 4308 4310 4329 C5' U E 192 4328 4330 4349 C5' G E 193 4348 4350 4372 C5' C E 194 4371 4373 4392 C5' U E 195 4391 4393 4412 C5' G E 196 4411 4413 4435 C5' C E 197 4434 4436 4455 C5' G E 198 4454 4456 4478 C5' A E 199 4477 4479 4500 C5' A E 200 4499 4501 4522 C5' G E 201 4521 4523 4545 C5' A E 202 4544 4546 4567 C5' G E 203 4566 4568 4590 C5' U E 204 4589 4591 4610 C5' C E 209 4609 4611 4630 C5' U E 210 4629 4631 4650 C5' C E 211 4649 4651 4670 C5' U E 212 4669 4671 4690 C5' G E 213 4689 4691 4713 C5' U E 214 4712 4714 4733 C5' U E 215 4732 4734 4753 C5' G E 216 4752 4754 4776 C5' U E 217 4775 4777 4796 C5' U E 218 4795 4797 4816 C5' C E 219 4815 4817 4836 C5' C E 220 4835 4837 4857 C5' G F 170 4856 4858 4880 C5' G F 171 4879 4881 4903 C5' A F 172 4902 4904 4925 C5' A F 173 4924 4926 4947 C5' C F 174 4946 4948 4967 C5' G F 175 4966 4968 4990 C5' C F 176 4989 4991 5010 C5' C F 177 5009 5011 5030 C5' G F 178 5029 5031 5053 C5' C F 179 5052 5054 5073 C5' G F 180 5072 5074 5096 C5' G F 181 5095 5097 5119 C5' U F 182 5118 5120 5139 C5' C F 183 5138 5140 5159 C5' A F 184 5158 5160 5181 C5' G F 185 5180 5182 5204 C5' C F 186 5203 5205 5224 C5' U F 187 5223 5225 5244 C5' C F 188 5243 5245 5264 C5' G F 189 5263 5265 5287 C5' G F 190 5286 5288 5310 C5' C F 191 5309 5311 5330 C5' U F 192 5329 5331 5350 C5' G F 193 5349 5351 5373 C5' C F 194 5372 5374 5393 C5' U F 195 5392 5394 5413 C5' G F 196 5412 5414 5436 C5' C F 197 5435 5437 5456 C5' G F 198 5455 5457 5479 C5' A F 199 5478 5480 5501 C5' A F 200 5500 5502 5523 C5' G F 201 5522 5524 5546 C5' A F 202 5545 5547 5568 C5' G F 203 5567 5569 5591 C5' U F 204 5590 5592 5611 C5' C F 209 5610 5612 5631 C5' U F 210 5630 5632 5651 C5' C F 211 5650 5652 5671 C5' U F 212 5670 5672 5691 C5' G F 213 5690 5692 5714 C5' U F 214 5713 5715 5734 C5' U F 215 5733 5735 5754 C5' G F 216 5753 5755 5777 C5' U F 217 5776 5778 5797 C5' U F 218 5796 5798 5817 C5' C F 219 5816 5818 5837 C5' C F 220 5836 5838 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 3852 P G E 170 OK OK 3853 3854 3855 3875 P G E 171 distorted distorted 3860 3876 3877 3878 3898 P A E 172 distorted distorted 3883 3899 3900 3901 3920 P A E 173 distorted distorted 3906 3921 3922 3923 3942 P C E 174 distorted distorted 3928 3943 3944 3945 3962 P G E 175 distorted distorted 3950 3963 3964 3965 3985 P C E 176 distorted distorted 3970 3986 3987 3988 4005 P C E 177 distorted distorted 3993 4006 4007 4008 4025 P G E 178 distorted distorted 4013 4026 4027 4028 4048 P C E 179 distorted distorted 4033 4049 4050 4051 4068 P G E 180 distorted distorted 4056 4069 4070 4071 4091 P G E 181 distorted distorted 4076 4092 4093 4094 4114 P U E 182 distorted distorted 4099 4115 4116 4117 4134 P C E 183 distorted distorted 4122 4135 4136 4137 4154 P A E 184 distorted distorted 4142 4155 4156 4157 4176 P G E 185 distorted distorted 4162 4177 4178 4179 4199 P C E 186 distorted distorted 4184 4200 4201 4202 4219 P U E 187 distorted distorted 4207 4220 4221 4222 4239 P C E 188 distorted distorted 4227 4240 4241 4242 4259 P G E 189 distorted distorted 4247 4260 4261 4262 4282 P G E 190 distorted distorted 4267 4283 4284 4285 4305 P C E 191 distorted distorted 4290 4306 4307 4308 4325 P U E 192 distorted distorted 4313 4326 4327 4328 4345 P G E 193 distorted distorted 4333 4346 4347 4348 4368 P C E 194 distorted distorted 4353 4369 4370 4371 4388 P U E 195 distorted distorted 4376 4389 4390 4391 4408 P G E 196 distorted distorted 4396 4409 4410 4411 4431 P C E 197 distorted distorted 4416 4432 4433 4434 4451 P G E 198 distorted distorted 4439 4452 4453 4454 4474 P A E 199 distorted distorted 4459 4475 4476 4477 4496 P A E 200 distorted distorted 4482 4497 4498 4499 4518 P G E 201 distorted distorted 4504 4519 4520 4521 4541 P A E 202 distorted distorted 4526 4542 4543 4544 4563 P G E 203 distorted distorted 4549 4564 4565 4566 4586 P U E 204 distorted distorted 4571 4587 4588 4589 4606 P C E 209 OK OK 4607 4608 4609 4626 P U E 210 distorted distorted 4614 4627 4628 4629 4646 P C E 211 distorted distorted 4634 4647 4648 4649 4666 P U E 212 distorted distorted 4654 4667 4668 4669 4686 P G E 213 distorted distorted 4674 4687 4688 4689 4709 P U E 214 distorted distorted 4694 4710 4711 4712 4729 P U E 215 distorted distorted 4717 4730 4731 4732 4749 P G E 216 distorted distorted 4737 4750 4751 4752 4772 P U E 217 distorted distorted 4757 4773 4774 4775 4792 P U E 218 distorted distorted 4780 4793 4794 4795 4812 P C E 219 distorted distorted 4800 4813 4814 4815 4832 P C E 220 distorted distorted 4820 4833 4834 4835 4853 P G F 170 OK OK 4854 4855 4856 4876 P G F 171 distorted distorted 4861 4877 4878 4879 4899 P A F 172 distorted distorted 4884 4900 4901 4902 4921 P A F 173 distorted distorted 4907 4922 4923 4924 4943 P C F 174 distorted distorted 4929 4944 4945 4946 4963 P G F 175 distorted distorted 4951 4964 4965 4966 4986 P C F 176 distorted distorted 4971 4987 4988 4989 5006 P C F 177 distorted distorted 4994 5007 5008 5009 5026 P G F 178 distorted distorted 5014 5027 5028 5029 5049 P C F 179 distorted distorted 5034 5050 5051 5052 5069 P G F 180 distorted distorted 5057 5070 5071 5072 5092 P G F 181 distorted distorted 5077 5093 5094 5095 5115 P U F 182 distorted distorted 5100 5116 5117 5118 5135 P C F 183 distorted distorted 5123 5136 5137 5138 5155 P A F 184 distorted distorted 5143 5156 5157 5158 5177 P G F 185 distorted distorted 5163 5178 5179 5180 5200 P C F 186 distorted distorted 5185 5201 5202 5203 5220 P U F 187 distorted distorted 5208 5221 5222 5223 5240 P C F 188 distorted distorted 5228 5241 5242 5243 5260 P G F 189 distorted distorted 5248 5261 5262 5263 5283 P G F 190 distorted distorted 5268 5284 5285 5286 5306 P C F 191 distorted distorted 5291 5307 5308 5309 5326 P U F 192 distorted distorted 5314 5327 5328 5329 5346 P G F 193 distorted distorted 5334 5347 5348 5349 5369 P C F 194 distorted distorted 5354 5370 5371 5372 5389 P U F 195 distorted distorted 5377 5390 5391 5392 5409 P G F 196 distorted distorted 5397 5410 5411 5412 5432 P C F 197 distorted distorted 5417 5433 5434 5435 5452 P G F 198 distorted distorted 5440 5453 5454 5455 5475 P A F 199 distorted distorted 5460 5476 5477 5478 5497 P A F 200 distorted distorted 5483 5498 5499 5500 5519 P G F 201 distorted distorted 5505 5520 5521 5522 5542 P A F 202 distorted distorted 5527 5543 5544 5545 5564 P G F 203 distorted distorted 5550 5565 5566 5567 5587 P U F 204 distorted distorted 5572 5588 5589 5590 5607 P C F 209 OK OK 5608 5609 5610 5627 P U F 210 distorted distorted 5615 5628 5629 5630 5647 P C F 211 distorted distorted 5635 5648 5649 5650 5667 P U F 212 distorted distorted 5655 5668 5669 5670 5687 P G F 213 distorted distorted 5675 5688 5689 5690 5710 P U F 214 distorted distorted 5695 5711 5712 5713 5730 P U F 215 distorted distorted 5718 5731 5732 5733 5750 P G F 216 distorted distorted 5738 5751 5752 5753 5773 P U F 217 distorted distorted 5758 5774 5775 5776 5793 P U F 218 distorted distorted 5781 5794 5795 5796 5813 P C F 219 distorted distorted 5801 5814 5815 5816 5833 P C F 220 distorted distorted 5821 5834 5835 5836 ---------------------------------------------------------------------------------