ID code: '4MGM' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 13 C1' G A 1 beta 8 14 11 36 C1' C A 2 beta 31 37 34 56 C1' G A 3 beta 51 57 54 79 C1' G A 4 beta 74 80 77 102 C1' A A 5 beta 97 103 100 124 C1' A A 6 beta 119 125 122 146 C1' G A 7 beta 141 147 144 169 C1' U A 8 beta 164 170 167 189 C1' A A 9 beta 184 190 187 211 C1' G A 10 beta 206 212 209 234 C1' U A 11 beta 229 235 232 254 C1' U A 12 beta 249 255 252 274 C1' C A 13 beta 269 275 272 294 C1' A A 14 beta 289 295 292 316 C1' G A 15 beta 311 317 314 339 C1' U A 16 beta 334 340 337 359 C1' G A 17 beta 354 360 357 382 C1' G A 18 beta 377 383 380 405 C1' U A 19 beta 400 406 403 425 C1' A A 20 beta 420 426 423 447 C1' G A 21 beta 442 448 445 470 C1' A A 22 beta 465 471 468 492 C1' A A 23 beta 487 493 490 514 C1' C A 24 beta 509 515 512 534 C1' A A 25 beta 529 535 532 556 C1' C A 26 beta 551 557 554 576 C1' C A 27 beta 571 577 574 596 C1' A A 28 beta 591 597 594 618 C1' C A 29 beta 613 619 616 638 C1' C A 30 beta 633 639 636 658 C1' G A 38 beta 653 659 656 681 C1' G A 39 beta 676 682 679 704 C1' U A 40 beta 699 705 702 724 C1' G A 41 beta 719 725 722 747 C1' G A 42 beta 742 748 745 770 C1' G A 45 beta 765 771 768 793 C1' U A 46 beta 788 794 791 813 C1' C A 47 beta 808 814 811 833 C1' G A 48 beta 828 834 831 856 C1' C A 49 beta 851 857 854 876 C1' G A 50 beta 871 877 874 899 C1' G A 51 beta 894 900 897 922 C1' G A 52 beta 917 923 920 945 C1' U A 53 beta 940 946 943 965 C1' U A 54 beta 960 966 963 985 C1' C A 55 beta 980 986 983 1005 C1' G A 56 beta 1000 1006 1003 1028 C1' A A 57 beta 1023 1029 1026 1050 C1' G A 58 beta 1045 1051 1048 1073 C1' U A 59 beta 1068 1074 1071 1093 C1' C A 60 beta 1088 1094 1091 1113 C1' C A 61 beta 1108 1114 1111 1133 C1' C A 62 beta 1128 1134 1131 1153 C1' G A 63 beta 1148 1154 1151 1176 C1' U A 64 beta 1171 1177 1174 1196 C1' C A 65 beta 1191 1197 1194 1216 C1' U A 66 beta 1211 1217 1214 1236 C1' U A 67 beta 1231 1237 1234 1256 C1' C A 68 beta 1251 1257 1254 1276 C1' C A 69 beta 1271 1277 1274 1296 C1' G A 70 beta 1291 1297 1294 1319 C1' C A 71 beta 1314 1320 1317 1339 C1' U A 72 beta 1334 1340 1337 1361 C1' G B 1 beta 1356 1362 1359 1384 C1' C B 2 beta 1379 1385 1382 1404 C1' G B 3 beta 1399 1405 1402 1427 C1' G B 4 beta 1422 1428 1425 1450 C1' A B 5 beta 1445 1451 1448 1472 C1' A B 6 beta 1467 1473 1470 1494 C1' G B 7 beta 1489 1495 1492 1517 C1' U B 8 beta 1512 1518 1515 1537 C1' A B 9 beta 1532 1538 1535 1559 C1' G B 10 beta 1554 1560 1557 1582 C1' U B 11 beta 1577 1583 1580 1602 C1' U B 12 beta 1597 1603 1600 1622 C1' C B 13 beta 1617 1623 1620 1642 C1' A B 14 beta 1637 1643 1640 1664 C1' G B 15 beta 1659 1665 1662 1687 C1' U B 16 beta 1682 1688 1685 1707 C1' G B 17 beta 1702 1708 1705 1730 C1' G B 18 beta 1725 1731 1728 1753 C1' U B 19 beta 1748 1754 1751 1773 C1' A B 20 beta 1768 1774 1771 1795 C1' G B 21 beta 1790 1796 1793 1818 C1' A B 22 beta 1813 1819 1816 1840 C1' A B 23 beta 1835 1841 1838 1862 C1' C B 24 beta 1857 1863 1860 1882 C1' A B 25 beta 1877 1883 1880 1904 C1' C B 26 beta 1899 1905 1902 1924 C1' C B 27 beta 1919 1925 1922 1944 C1' A B 28 beta 1939 1945 1942 1966 C1' C B 29 beta 1961 1967 1964 1986 C1' C B 30 beta 1981 1987 1984 2006 C1' G B 38 beta 2001 2007 2004 2029 C1' G B 39 beta 2024 2030 2027 2052 C1' U B 40 beta 2047 2053 2050 2072 C1' G B 41 beta 2067 2073 2070 2095 C1' G B 42 beta 2090 2096 2093 2118 C1' G B 45 beta 2113 2119 2116 2141 C1' U B 46 beta 2136 2142 2139 2161 C1' C B 47 beta 2156 2162 2159 2181 C1' G B 48 beta 2176 2182 2179 2204 C1' C B 49 beta 2199 2205 2202 2224 C1' G B 50 beta 2219 2225 2222 2247 C1' G B 51 beta 2242 2248 2245 2270 C1' G B 52 beta 2265 2271 2268 2293 C1' U B 53 beta 2288 2294 2291 2313 C1' U B 54 beta 2308 2314 2311 2333 C1' C B 55 beta 2328 2334 2331 2353 C1' G B 56 beta 2348 2354 2351 2376 C1' A B 57 beta 2371 2377 2374 2398 C1' G B 58 beta 2393 2399 2396 2421 C1' U B 59 beta 2416 2422 2419 2441 C1' C B 60 beta 2436 2442 2439 2461 C1' C B 61 beta 2456 2462 2459 2481 C1' C B 62 beta 2476 2482 2479 2501 C1' G B 63 beta 2496 2502 2499 2524 C1' U B 64 beta 2519 2525 2522 2544 C1' C B 65 beta 2539 2545 2542 2564 C1' U B 66 beta 2559 2565 2562 2584 C1' U B 67 beta 2579 2585 2582 2604 C1' C B 68 beta 2599 2605 2602 2624 C1' C B 69 beta 2619 2625 2622 2644 C1' G B 70 beta 2639 2645 2642 2667 C1' C B 71 beta 2662 2668 2665 2687 C1' U B 72 beta 2682 2688 2685 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 11 C2' G A 1 OK 13 9 12 34 C2' C A 2 OK 36 32 35 54 C2' G A 3 OK 56 52 55 77 C2' G A 4 OK 79 75 78 100 C2' A A 5 OK 102 98 101 122 C2' A A 6 OK 124 120 123 144 C2' G A 7 OK 146 142 145 167 C2' U A 8 OK 169 165 168 187 C2' A A 9 OK 189 185 188 209 C2' G A 10 OK 211 207 210 232 C2' U A 11 OK 234 230 233 252 C2' U A 12 OK 254 250 253 272 C2' C A 13 OK 274 270 273 292 C2' A A 14 OK 294 290 293 314 C2' G A 15 OK 316 312 315 337 C2' U A 16 OK 339 335 338 357 C2' G A 17 OK 359 355 358 380 C2' G A 18 OK 382 378 381 403 C2' U A 19 OK 405 401 404 423 C2' A A 20 OK 425 421 424 445 C2' G A 21 OK 447 443 446 468 C2' A A 22 OK 470 466 469 490 C2' A A 23 OK 492 488 491 512 C2' C A 24 OK 514 510 513 532 C2' A A 25 OK 534 530 533 554 C2' C A 26 OK 556 552 555 574 C2' C A 27 OK 576 572 575 594 C2' A A 28 OK 596 592 595 616 C2' C A 29 OK 618 614 617 636 C2' C A 30 OK 638 634 637 656 C2' G A 38 OK 658 654 657 679 C2' G A 39 OK 681 677 680 702 C2' U A 40 OK 704 700 703 722 C2' G A 41 OK 724 720 723 745 C2' G A 42 OK 747 743 746 768 C2' G A 45 OK 770 766 769 791 C2' U A 46 OK 793 789 792 811 C2' C A 47 OK 813 809 812 831 C2' G A 48 OK 833 829 832 854 C2' C A 49 OK 856 852 855 874 C2' G A 50 OK 876 872 875 897 C2' G A 51 OK 899 895 898 920 C2' G A 52 OK 922 918 921 943 C2' U A 53 OK 945 941 944 963 C2' U A 54 OK 965 961 964 983 C2' C A 55 OK 985 981 984 1003 C2' G A 56 OK 1005 1001 1004 1026 C2' A A 57 OK 1028 1024 1027 1048 C2' G A 58 OK 1050 1046 1049 1071 C2' U A 59 OK 1073 1069 1072 1091 C2' C A 60 OK 1093 1089 1092 1111 C2' C A 61 OK 1113 1109 1112 1131 C2' C A 62 OK 1133 1129 1132 1151 C2' G A 63 OK 1153 1149 1152 1174 C2' U A 64 OK 1176 1172 1175 1194 C2' C A 65 OK 1196 1192 1195 1214 C2' U A 66 OK 1216 1212 1215 1234 C2' U A 67 OK 1236 1232 1235 1254 C2' C A 68 OK 1256 1252 1255 1274 C2' C A 69 OK 1276 1272 1275 1294 C2' G A 70 OK 1296 1292 1295 1317 C2' C A 71 OK 1319 1315 1318 1337 C2' U A 72 OK 1339 1335 1338 1359 C2' G B 1 OK 1361 1357 1360 1382 C2' C B 2 OK 1384 1380 1383 1402 C2' G B 3 OK 1404 1400 1403 1425 C2' G B 4 OK 1427 1423 1426 1448 C2' A B 5 OK 1450 1446 1449 1470 C2' A B 6 OK 1472 1468 1471 1492 C2' G B 7 OK 1494 1490 1493 1515 C2' U B 8 OK 1517 1513 1516 1535 C2' A B 9 OK 1537 1533 1536 1557 C2' G B 10 OK 1559 1555 1558 1580 C2' U B 11 OK 1582 1578 1581 1600 C2' U B 12 OK 1602 1598 1601 1620 C2' C B 13 OK 1622 1618 1621 1640 C2' A B 14 OK 1642 1638 1641 1662 C2' G B 15 OK 1664 1660 1663 1685 C2' U B 16 OK 1687 1683 1686 1705 C2' G B 17 OK 1707 1703 1706 1728 C2' G B 18 OK 1730 1726 1729 1751 C2' U B 19 OK 1753 1749 1752 1771 C2' A B 20 OK 1773 1769 1772 1793 C2' G B 21 OK 1795 1791 1794 1816 C2' A B 22 OK 1818 1814 1817 1838 C2' A B 23 OK 1840 1836 1839 1860 C2' C B 24 OK 1862 1858 1861 1880 C2' A B 25 OK 1882 1878 1881 1902 C2' C B 26 OK 1904 1900 1903 1922 C2' C B 27 OK 1924 1920 1923 1942 C2' A B 28 OK 1944 1940 1943 1964 C2' C B 29 OK 1966 1962 1965 1984 C2' C B 30 OK 1986 1982 1985 2004 C2' G B 38 OK 2006 2002 2005 2027 C2' G B 39 OK 2029 2025 2028 2050 C2' U B 40 OK 2052 2048 2051 2070 C2' G B 41 OK 2072 2068 2071 2093 C2' G B 42 OK 2095 2091 2094 2116 C2' G B 45 OK 2118 2114 2117 2139 C2' U B 46 OK 2141 2137 2140 2159 C2' C B 47 OK 2161 2157 2160 2179 C2' G B 48 OK 2181 2177 2180 2202 C2' C B 49 OK 2204 2200 2203 2222 C2' G B 50 OK 2224 2220 2223 2245 C2' G B 51 OK 2247 2243 2246 2268 C2' G B 52 OK 2270 2266 2269 2291 C2' U B 53 OK 2293 2289 2292 2311 C2' U B 54 OK 2313 2309 2312 2331 C2' C B 55 OK 2333 2329 2332 2351 C2' G B 56 OK 2353 2349 2352 2374 C2' A B 57 OK 2376 2372 2375 2396 C2' G B 58 OK 2398 2394 2397 2419 C2' U B 59 OK 2421 2417 2420 2439 C2' C B 60 OK 2441 2437 2440 2459 C2' C B 61 OK 2461 2457 2460 2479 C2' C B 62 OK 2481 2477 2480 2499 C2' G B 63 OK 2501 2497 2500 2522 C2' U B 64 OK 2524 2520 2523 2542 C2' C B 65 OK 2544 2540 2543 2562 C2' U B 66 OK 2564 2560 2563 2582 C2' U B 67 OK 2584 2580 2583 2602 C2' C B 68 OK 2604 2600 2603 2622 C2' C B 69 OK 2624 2620 2623 2642 C2' G B 70 OK 2644 2640 2643 2665 C2' C B 71 OK 2667 2663 2666 2685 C2' U B 72 OK 2687 2683 2686 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 9 C3' G A 1 OK 7 10 11 32 C3' C A 2 OK 30 33 34 52 C3' G A 3 OK 50 53 54 75 C3' G A 4 OK 73 76 77 98 C3' A A 5 OK 96 99 100 120 C3' A A 6 OK 118 121 122 142 C3' G A 7 OK 140 143 144 165 C3' U A 8 OK 163 166 167 185 C3' A A 9 OK 183 186 187 207 C3' G A 10 OK 205 208 209 230 C3' U A 11 OK 228 231 232 250 C3' U A 12 OK 248 251 252 270 C3' C A 13 OK 268 271 272 290 C3' A A 14 OK 288 291 292 312 C3' G A 15 OK 310 313 314 335 C3' U A 16 OK 333 336 337 355 C3' G A 17 OK 353 356 357 378 C3' G A 18 OK 376 379 380 401 C3' U A 19 OK 399 402 403 421 C3' A A 20 OK 419 422 423 443 C3' G A 21 OK 441 444 445 466 C3' A A 22 OK 464 467 468 488 C3' A A 23 OK 486 489 490 510 C3' C A 24 OK 508 511 512 530 C3' A A 25 OK 528 531 532 552 C3' C A 26 OK 550 553 554 572 C3' C A 27 OK 570 573 574 592 C3' A A 28 OK 590 593 594 614 C3' C A 29 OK 612 615 616 634 C3' C A 30 OK 632 635 636 654 C3' G A 38 OK 652 655 656 677 C3' G A 39 OK 675 678 679 700 C3' U A 40 OK 698 701 702 720 C3' G A 41 OK 718 721 722 743 C3' G A 42 OK 741 744 745 766 C3' G A 45 OK 764 767 768 789 C3' U A 46 OK 787 790 791 809 C3' C A 47 OK 807 810 811 829 C3' G A 48 OK 827 830 831 852 C3' C A 49 OK 850 853 854 872 C3' G A 50 OK 870 873 874 895 C3' G A 51 OK 893 896 897 918 C3' G A 52 OK 916 919 920 941 C3' U A 53 OK 939 942 943 961 C3' U A 54 OK 959 962 963 981 C3' C A 55 OK 979 982 983 1001 C3' G A 56 OK 999 1002 1003 1024 C3' A A 57 OK 1022 1025 1026 1046 C3' G A 58 OK 1044 1047 1048 1069 C3' U A 59 OK 1067 1070 1071 1089 C3' C A 60 OK 1087 1090 1091 1109 C3' C A 61 OK 1107 1110 1111 1129 C3' C A 62 OK 1127 1130 1131 1149 C3' G A 63 OK 1147 1150 1151 1172 C3' U A 64 OK 1170 1173 1174 1192 C3' C A 65 OK 1190 1193 1194 1212 C3' U A 66 OK 1210 1213 1214 1232 C3' U A 67 OK 1230 1233 1234 1252 C3' C A 68 OK 1250 1253 1254 1272 C3' C A 69 OK 1270 1273 1274 1292 C3' G A 70 OK 1290 1293 1294 1315 C3' C A 71 OK 1313 1316 1317 1335 C3' U A 72 OK 1333 1336 1337 1357 C3' G B 1 OK 1355 1358 1359 1380 C3' C B 2 OK 1378 1381 1382 1400 C3' G B 3 OK 1398 1401 1402 1423 C3' G B 4 OK 1421 1424 1425 1446 C3' A B 5 OK 1444 1447 1448 1468 C3' A B 6 OK 1466 1469 1470 1490 C3' G B 7 OK 1488 1491 1492 1513 C3' U B 8 OK 1511 1514 1515 1533 C3' A B 9 OK 1531 1534 1535 1555 C3' G B 10 OK 1553 1556 1557 1578 C3' U B 11 OK 1576 1579 1580 1598 C3' U B 12 OK 1596 1599 1600 1618 C3' C B 13 OK 1616 1619 1620 1638 C3' A B 14 OK 1636 1639 1640 1660 C3' G B 15 OK 1658 1661 1662 1683 C3' U B 16 OK 1681 1684 1685 1703 C3' G B 17 OK 1701 1704 1705 1726 C3' G B 18 OK 1724 1727 1728 1749 C3' U B 19 OK 1747 1750 1751 1769 C3' A B 20 OK 1767 1770 1771 1791 C3' G B 21 OK 1789 1792 1793 1814 C3' A B 22 OK 1812 1815 1816 1836 C3' A B 23 OK 1834 1837 1838 1858 C3' C B 24 OK 1856 1859 1860 1878 C3' A B 25 OK 1876 1879 1880 1900 C3' C B 26 OK 1898 1901 1902 1920 C3' C B 27 OK 1918 1921 1922 1940 C3' A B 28 OK 1938 1941 1942 1962 C3' C B 29 OK 1960 1963 1964 1982 C3' C B 30 OK 1980 1983 1984 2002 C3' G B 38 OK 2000 2003 2004 2025 C3' G B 39 OK 2023 2026 2027 2048 C3' U B 40 OK 2046 2049 2050 2068 C3' G B 41 OK 2066 2069 2070 2091 C3' G B 42 OK 2089 2092 2093 2114 C3' G B 45 OK 2112 2115 2116 2137 C3' U B 46 OK 2135 2138 2139 2157 C3' C B 47 OK 2155 2158 2159 2177 C3' G B 48 OK 2175 2178 2179 2200 C3' C B 49 OK 2198 2201 2202 2220 C3' G B 50 OK 2218 2221 2222 2243 C3' G B 51 OK 2241 2244 2245 2266 C3' G B 52 OK 2264 2267 2268 2289 C3' U B 53 OK 2287 2290 2291 2309 C3' U B 54 OK 2307 2310 2311 2329 C3' C B 55 OK 2327 2330 2331 2349 C3' G B 56 OK 2347 2350 2351 2372 C3' A B 57 OK 2370 2373 2374 2394 C3' G B 58 OK 2392 2395 2396 2417 C3' U B 59 OK 2415 2418 2419 2437 C3' C B 60 OK 2435 2438 2439 2457 C3' C B 61 OK 2455 2458 2459 2477 C3' C B 62 OK 2475 2478 2479 2497 C3' G B 63 OK 2495 2498 2499 2520 C3' U B 64 OK 2518 2521 2522 2540 C3' C B 65 OK 2538 2541 2542 2560 C3' U B 66 OK 2558 2561 2562 2580 C3' U B 67 OK 2578 2581 2582 2600 C3' C B 68 OK 2598 2601 2602 2620 C3' C B 69 OK 2618 2621 2622 2640 C3' G B 70 OK 2638 2641 2642 2663 C3' C B 71 OK 2661 2664 2665 2683 C3' U B 72 OK 2681 2684 2685 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 7 C4' G A 1 OK 9 6 8 30 C4' C A 2 OK 32 29 31 50 C4' G A 3 OK 52 49 51 73 C4' G A 4 OK 75 72 74 96 C4' A A 5 OK 98 95 97 118 C4' A A 6 OK 120 117 119 140 C4' G A 7 OK 142 139 141 163 C4' U A 8 OK 165 162 164 183 C4' A A 9 OK 185 182 184 205 C4' G A 10 OK 207 204 206 228 C4' U A 11 OK 230 227 229 248 C4' U A 12 OK 250 247 249 268 C4' C A 13 OK 270 267 269 288 C4' A A 14 OK 290 287 289 310 C4' G A 15 OK 312 309 311 333 C4' U A 16 OK 335 332 334 353 C4' G A 17 OK 355 352 354 376 C4' G A 18 OK 378 375 377 399 C4' U A 19 OK 401 398 400 419 C4' A A 20 OK 421 418 420 441 C4' G A 21 OK 443 440 442 464 C4' A A 22 OK 466 463 465 486 C4' A A 23 OK 488 485 487 508 C4' C A 24 OK 510 507 509 528 C4' A A 25 OK 530 527 529 550 C4' C A 26 OK 552 549 551 570 C4' C A 27 OK 572 569 571 590 C4' A A 28 OK 592 589 591 612 C4' C A 29 OK 614 611 613 632 C4' C A 30 OK 634 631 633 652 C4' G A 38 OK 654 651 653 675 C4' G A 39 OK 677 674 676 698 C4' U A 40 OK 700 697 699 718 C4' G A 41 OK 720 717 719 741 C4' G A 42 OK 743 740 742 764 C4' G A 45 OK 766 763 765 787 C4' U A 46 OK 789 786 788 807 C4' C A 47 OK 809 806 808 827 C4' G A 48 OK 829 826 828 850 C4' C A 49 OK 852 849 851 870 C4' G A 50 OK 872 869 871 893 C4' G A 51 OK 895 892 894 916 C4' G A 52 OK 918 915 917 939 C4' U A 53 OK 941 938 940 959 C4' U A 54 OK 961 958 960 979 C4' C A 55 OK 981 978 980 999 C4' G A 56 OK 1001 998 1000 1022 C4' A A 57 OK 1024 1021 1023 1044 C4' G A 58 OK 1046 1043 1045 1067 C4' U A 59 OK 1069 1066 1068 1087 C4' C A 60 OK 1089 1086 1088 1107 C4' C A 61 OK 1109 1106 1108 1127 C4' C A 62 OK 1129 1126 1128 1147 C4' G A 63 OK 1149 1146 1148 1170 C4' U A 64 OK 1172 1169 1171 1190 C4' C A 65 OK 1192 1189 1191 1210 C4' U A 66 OK 1212 1209 1211 1230 C4' U A 67 OK 1232 1229 1231 1250 C4' C A 68 OK 1252 1249 1251 1270 C4' C A 69 OK 1272 1269 1271 1290 C4' G A 70 OK 1292 1289 1291 1313 C4' C A 71 OK 1315 1312 1314 1333 C4' U A 72 OK 1335 1332 1334 1355 C4' G B 1 OK 1357 1354 1356 1378 C4' C B 2 OK 1380 1377 1379 1398 C4' G B 3 OK 1400 1397 1399 1421 C4' G B 4 OK 1423 1420 1422 1444 C4' A B 5 OK 1446 1443 1445 1466 C4' A B 6 OK 1468 1465 1467 1488 C4' G B 7 OK 1490 1487 1489 1511 C4' U B 8 OK 1513 1510 1512 1531 C4' A B 9 OK 1533 1530 1532 1553 C4' G B 10 OK 1555 1552 1554 1576 C4' U B 11 OK 1578 1575 1577 1596 C4' U B 12 OK 1598 1595 1597 1616 C4' C B 13 OK 1618 1615 1617 1636 C4' A B 14 OK 1638 1635 1637 1658 C4' G B 15 OK 1660 1657 1659 1681 C4' U B 16 OK 1683 1680 1682 1701 C4' G B 17 OK 1703 1700 1702 1724 C4' G B 18 OK 1726 1723 1725 1747 C4' U B 19 OK 1749 1746 1748 1767 C4' A B 20 OK 1769 1766 1768 1789 C4' G B 21 OK 1791 1788 1790 1812 C4' A B 22 OK 1814 1811 1813 1834 C4' A B 23 OK 1836 1833 1835 1856 C4' C B 24 OK 1858 1855 1857 1876 C4' A B 25 OK 1878 1875 1877 1898 C4' C B 26 OK 1900 1897 1899 1918 C4' C B 27 OK 1920 1917 1919 1938 C4' A B 28 OK 1940 1937 1939 1960 C4' C B 29 OK 1962 1959 1961 1980 C4' C B 30 OK 1982 1979 1981 2000 C4' G B 38 OK 2002 1999 2001 2023 C4' G B 39 OK 2025 2022 2024 2046 C4' U B 40 OK 2048 2045 2047 2066 C4' G B 41 OK 2068 2065 2067 2089 C4' G B 42 OK 2091 2088 2090 2112 C4' G B 45 OK 2114 2111 2113 2135 C4' U B 46 OK 2137 2134 2136 2155 C4' C B 47 OK 2157 2154 2156 2175 C4' G B 48 OK 2177 2174 2176 2198 C4' C B 49 OK 2200 2197 2199 2218 C4' G B 50 OK 2220 2217 2219 2241 C4' G B 51 OK 2243 2240 2242 2264 C4' G B 52 OK 2266 2263 2265 2287 C4' U B 53 OK 2289 2286 2288 2307 C4' U B 54 OK 2309 2306 2308 2327 C4' C B 55 OK 2329 2326 2328 2347 C4' G B 56 OK 2349 2346 2348 2370 C4' A B 57 OK 2372 2369 2371 2392 C4' G B 58 OK 2394 2391 2393 2415 C4' U B 59 OK 2417 2414 2416 2435 C4' C B 60 OK 2437 2434 2436 2455 C4' C B 61 OK 2457 2454 2456 2475 C4' C B 62 OK 2477 2474 2476 2495 C4' G B 63 OK 2497 2494 2496 2518 C4' U B 64 OK 2520 2517 2519 2538 C4' C B 65 OK 2540 2537 2539 2558 C4' U B 66 OK 2560 2557 2559 2578 C4' U B 67 OK 2580 2577 2579 2598 C4' C B 68 OK 2600 2597 2599 2618 C4' C B 69 OK 2620 2617 2619 2638 C4' G B 70 OK 2640 2637 2639 2661 C4' C B 71 OK 2663 2660 2662 2681 C4' U B 72 OK 2683 2680 2682 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 6 C5' G A 1 5 7 29 C5' C A 2 28 30 49 C5' G A 3 48 50 72 C5' G A 4 71 73 95 C5' A A 5 94 96 117 C5' A A 6 116 118 139 C5' G A 7 138 140 162 C5' U A 8 161 163 182 C5' A A 9 181 183 204 C5' G A 10 203 205 227 C5' U A 11 226 228 247 C5' U A 12 246 248 267 C5' C A 13 266 268 287 C5' A A 14 286 288 309 C5' G A 15 308 310 332 C5' U A 16 331 333 352 C5' G A 17 351 353 375 C5' G A 18 374 376 398 C5' U A 19 397 399 418 C5' A A 20 417 419 440 C5' G A 21 439 441 463 C5' A A 22 462 464 485 C5' A A 23 484 486 507 C5' C A 24 506 508 527 C5' A A 25 526 528 549 C5' C A 26 548 550 569 C5' C A 27 568 570 589 C5' A A 28 588 590 611 C5' C A 29 610 612 631 C5' C A 30 630 632 651 C5' G A 38 650 652 674 C5' G A 39 673 675 697 C5' U A 40 696 698 717 C5' G A 41 716 718 740 C5' G A 42 739 741 763 C5' G A 45 762 764 786 C5' U A 46 785 787 806 C5' C A 47 805 807 826 C5' G A 48 825 827 849 C5' C A 49 848 850 869 C5' G A 50 868 870 892 C5' G A 51 891 893 915 C5' G A 52 914 916 938 C5' U A 53 937 939 958 C5' U A 54 957 959 978 C5' C A 55 977 979 998 C5' G A 56 997 999 1021 C5' A A 57 1020 1022 1043 C5' G A 58 1042 1044 1066 C5' U A 59 1065 1067 1086 C5' C A 60 1085 1087 1106 C5' C A 61 1105 1107 1126 C5' C A 62 1125 1127 1146 C5' G A 63 1145 1147 1169 C5' U A 64 1168 1170 1189 C5' C A 65 1188 1190 1209 C5' U A 66 1208 1210 1229 C5' U A 67 1228 1230 1249 C5' C A 68 1248 1250 1269 C5' C A 69 1268 1270 1289 C5' G A 70 1288 1290 1312 C5' C A 71 1311 1313 1332 C5' U A 72 1331 1333 1354 C5' G B 1 1353 1355 1377 C5' C B 2 1376 1378 1397 C5' G B 3 1396 1398 1420 C5' G B 4 1419 1421 1443 C5' A B 5 1442 1444 1465 C5' A B 6 1464 1466 1487 C5' G B 7 1486 1488 1510 C5' U B 8 1509 1511 1530 C5' A B 9 1529 1531 1552 C5' G B 10 1551 1553 1575 C5' U B 11 1574 1576 1595 C5' U B 12 1594 1596 1615 C5' C B 13 1614 1616 1635 C5' A B 14 1634 1636 1657 C5' G B 15 1656 1658 1680 C5' U B 16 1679 1681 1700 C5' G B 17 1699 1701 1723 C5' G B 18 1722 1724 1746 C5' U B 19 1745 1747 1766 C5' A B 20 1765 1767 1788 C5' G B 21 1787 1789 1811 C5' A B 22 1810 1812 1833 C5' A B 23 1832 1834 1855 C5' C B 24 1854 1856 1875 C5' A B 25 1874 1876 1897 C5' C B 26 1896 1898 1917 C5' C B 27 1916 1918 1937 C5' A B 28 1936 1938 1959 C5' C B 29 1958 1960 1979 C5' C B 30 1978 1980 1999 C5' G B 38 1998 2000 2022 C5' G B 39 2021 2023 2045 C5' U B 40 2044 2046 2065 C5' G B 41 2064 2066 2088 C5' G B 42 2087 2089 2111 C5' G B 45 2110 2112 2134 C5' U B 46 2133 2135 2154 C5' C B 47 2153 2155 2174 C5' G B 48 2173 2175 2197 C5' C B 49 2196 2198 2217 C5' G B 50 2216 2218 2240 C5' G B 51 2239 2241 2263 C5' G B 52 2262 2264 2286 C5' U B 53 2285 2287 2306 C5' U B 54 2305 2307 2326 C5' C B 55 2325 2327 2346 C5' G B 56 2345 2347 2369 C5' A B 57 2368 2370 2391 C5' G B 58 2390 2392 2414 C5' U B 59 2413 2415 2434 C5' C B 60 2433 2435 2454 C5' C B 61 2453 2455 2474 C5' C B 62 2473 2475 2494 C5' G B 63 2493 2495 2517 C5' U B 64 2516 2518 2537 C5' C B 65 2536 2538 2557 C5' U B 66 2556 2558 2577 C5' U B 67 2576 2578 2597 C5' C B 68 2596 2598 2617 C5' C B 69 2616 2618 2637 C5' G B 70 2636 2638 2660 C5' C B 71 2659 2661 2680 C5' U B 72 2679 2681 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 2 P G A 1 OK OK 3 4 5 25 P C A 2 distorted distorted 10 26 27 28 45 P G A 3 distorted distorted 33 46 47 48 68 P G A 4 distorted distorted 53 69 70 71 91 P A A 5 distorted distorted 76 92 93 94 113 P A A 6 distorted distorted 99 114 115 116 135 P G A 7 distorted distorted 121 136 137 138 158 P U A 8 distorted distorted 143 159 160 161 178 P A A 9 distorted distorted 166 179 180 181 200 P G A 10 distorted distorted 186 201 202 203 223 P U A 11 distorted distorted 208 224 225 226 243 P U A 12 distorted distorted 231 244 245 246 263 P C A 13 distorted distorted 251 264 265 266 283 P A A 14 distorted distorted 271 284 285 286 305 P G A 15 distorted distorted 291 306 307 308 328 P U A 16 distorted distorted 313 329 330 331 348 P G A 17 distorted distorted 336 349 350 351 371 P G A 18 distorted distorted 356 372 373 374 394 P U A 19 distorted distorted 379 395 396 397 414 P A A 20 distorted distorted 402 415 416 417 436 P G A 21 distorted distorted 422 437 438 439 459 P A A 22 distorted distorted 444 460 461 462 481 P A A 23 distorted distorted 467 482 483 484 503 P C A 24 distorted distorted 489 504 505 506 523 P A A 25 distorted distorted 511 524 525 526 545 P C A 26 distorted distorted 531 546 547 548 565 P C A 27 distorted distorted 553 566 567 568 585 P A A 28 distorted distorted 573 586 587 588 607 P C A 29 distorted distorted 593 608 609 610 627 P C A 30 distorted distorted 615 628 629 630 647 P G A 38 OK OK 648 649 650 670 P G A 39 distorted distorted 655 671 672 673 693 P U A 40 distorted distorted 678 694 695 696 713 P G A 41 distorted distorted 701 714 715 716 736 P G A 42 distorted distorted 721 737 738 739 759 P G A 45 OK OK 760 761 762 782 P U A 46 distorted distorted 767 783 784 785 802 P C A 47 distorted distorted 790 803 804 805 822 P G A 48 distorted distorted 810 823 824 825 845 P C A 49 distorted distorted 830 846 847 848 865 P G A 50 distorted distorted 853 866 867 868 888 P G A 51 distorted distorted 873 889 890 891 911 P G A 52 distorted distorted 896 912 913 914 934 P U A 53 distorted distorted 919 935 936 937 954 P U A 54 distorted distorted 942 955 956 957 974 P C A 55 distorted distorted 962 975 976 977 994 P G A 56 distorted distorted 982 995 996 997 1017 P A A 57 distorted distorted 1002 1018 1019 1020 1039 P G A 58 distorted distorted 1025 1040 1041 1042 1062 P U A 59 distorted distorted 1047 1063 1064 1065 1082 P C A 60 distorted distorted 1070 1083 1084 1085 1102 P C A 61 distorted distorted 1090 1103 1104 1105 1122 P C A 62 distorted distorted 1110 1123 1124 1125 1142 P G A 63 distorted distorted 1130 1143 1144 1145 1165 P U A 64 distorted distorted 1150 1166 1167 1168 1185 P C A 65 distorted distorted 1173 1186 1187 1188 1205 P U A 66 distorted distorted 1193 1206 1207 1208 1225 P U A 67 distorted distorted 1213 1226 1227 1228 1245 P C A 68 distorted distorted 1233 1246 1247 1248 1265 P C A 69 distorted distorted 1253 1266 1267 1268 1285 P G A 70 distorted distorted 1273 1286 1287 1288 1308 P C A 71 distorted distorted 1293 1309 1310 1311 1328 P U A 72 distorted distorted 1316 1329 1330 1331 1350 P G B 1 OK OK 1351 1352 1353 1373 P C B 2 distorted distorted 1358 1374 1375 1376 1393 P G B 3 distorted distorted 1381 1394 1395 1396 1416 P G B 4 distorted distorted 1401 1417 1418 1419 1439 P A B 5 distorted distorted 1424 1440 1441 1442 1461 P A B 6 distorted distorted 1447 1462 1463 1464 1483 P G B 7 distorted distorted 1469 1484 1485 1486 1506 P U B 8 distorted distorted 1491 1507 1508 1509 1526 P A B 9 distorted distorted 1514 1527 1528 1529 1548 P G B 10 distorted distorted 1534 1549 1550 1551 1571 P U B 11 distorted distorted 1556 1572 1573 1574 1591 P U B 12 distorted distorted 1579 1592 1593 1594 1611 P C B 13 distorted distorted 1599 1612 1613 1614 1631 P A B 14 distorted distorted 1619 1632 1633 1634 1653 P G B 15 distorted distorted 1639 1654 1655 1656 1676 P U B 16 distorted distorted 1661 1677 1678 1679 1696 P G B 17 distorted distorted 1684 1697 1698 1699 1719 P G B 18 distorted distorted 1704 1720 1721 1722 1742 P U B 19 distorted distorted 1727 1743 1744 1745 1762 P A B 20 distorted distorted 1750 1763 1764 1765 1784 P G B 21 distorted distorted 1770 1785 1786 1787 1807 P A B 22 distorted distorted 1792 1808 1809 1810 1829 P A B 23 distorted distorted 1815 1830 1831 1832 1851 P C B 24 distorted distorted 1837 1852 1853 1854 1871 P A B 25 distorted distorted 1859 1872 1873 1874 1893 P C B 26 distorted distorted 1879 1894 1895 1896 1913 P C B 27 distorted distorted 1901 1914 1915 1916 1933 P A B 28 distorted distorted 1921 1934 1935 1936 1955 P C B 29 distorted distorted 1941 1956 1957 1958 1975 P C B 30 distorted distorted 1963 1976 1977 1978 1995 P G B 38 OK OK 1996 1997 1998 2018 P G B 39 distorted distorted 2003 2019 2020 2021 2041 P U B 40 distorted distorted 2026 2042 2043 2044 2061 P G B 41 distorted distorted 2049 2062 2063 2064 2084 P G B 42 distorted distorted 2069 2085 2086 2087 2107 P G B 45 OK OK 2108 2109 2110 2130 P U B 46 distorted distorted 2115 2131 2132 2133 2150 P C B 47 distorted distorted 2138 2151 2152 2153 2170 P G B 48 distorted distorted 2158 2171 2172 2173 2193 P C B 49 distorted distorted 2178 2194 2195 2196 2213 P G B 50 distorted distorted 2201 2214 2215 2216 2236 P G B 51 distorted distorted 2221 2237 2238 2239 2259 P G B 52 distorted distorted 2244 2260 2261 2262 2282 P U B 53 distorted distorted 2267 2283 2284 2285 2302 P U B 54 distorted distorted 2290 2303 2304 2305 2322 P C B 55 distorted distorted 2310 2323 2324 2325 2342 P G B 56 distorted distorted 2330 2343 2344 2345 2365 P A B 57 distorted distorted 2350 2366 2367 2368 2387 P G B 58 distorted distorted 2373 2388 2389 2390 2410 P U B 59 distorted distorted 2395 2411 2412 2413 2430 P C B 60 distorted distorted 2418 2431 2432 2433 2450 P C B 61 distorted distorted 2438 2451 2452 2453 2470 P C B 62 distorted distorted 2458 2471 2472 2473 2490 P G B 63 distorted distorted 2478 2491 2492 2493 2513 P U B 64 distorted distorted 2498 2514 2515 2516 2533 P C B 65 distorted distorted 2521 2534 2535 2536 2553 P U B 66 distorted distorted 2541 2554 2555 2556 2573 P U B 67 distorted distorted 2561 2574 2575 2576 2593 P C B 68 distorted distorted 2581 2594 2595 2596 2613 P C B 69 distorted distorted 2601 2614 2615 2616 2633 P G B 70 distorted distorted 2621 2634 2635 2636 2656 P C B 71 distorted distorted 2641 2657 2658 2659 2676 P U B 72 distorted distorted 2664 2677 2678 2679 ---------------------------------------------------------------------------------