ID code: '4MEG' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 13 C1' G A 1 beta 8 14 11 36 C1' C A 2 beta 31 37 34 56 C1' G A 3 beta 51 57 54 79 C1' C A 4 beta 74 80 77 99 C1' C A 5 beta 94 100 97 119 C1' U A 6 114 117 131 C1' G A 7 beta 126 132 129 154 C1' G A 8 beta 149 155 152 177 C1' A A 9 beta 172 178 175 199 C1' C A 10 beta 194 200 197 219 C1' U A 11 beta 214 220 217 239 C1' U A 12 beta 234 240 237 259 C1' A A 13 beta 254 260 257 281 C1' A A 14 beta 276 282 279 303 C1' A A 15 beta 298 304 301 325 C1' G A 16 beta 320 326 323 353 C1' C B 6 beta 348 354 351 373 C1' U B 7 beta 368 374 371 393 C1' U B 8 beta 388 394 391 413 C1' U B 9 beta 408 414 411 433 C1' A B 10 beta 428 434 431 455 C1' A B 11 beta 450 456 453 477 C1' G B 12 beta 472 478 475 500 C1' U B 13 beta 495 501 498 520 C1' U B 14 beta 515 521 518 540 C1' G B 15 beta 535 541 538 563 C1' A B 16 beta 558 564 561 585 C1' C B 17 beta 580 586 583 605 C1' G B 18 beta 600 606 603 628 C1' A B 19 beta 623 629 626 650 C1' G B 20 beta 645 651 648 673 C1' G B 21 beta 668 674 671 696 C1' G B 22 beta 691 697 694 719 C1' C B 23 beta 714 720 717 739 C1' A B 24 beta 734 740 737 761 C1' G B 25 beta 756 762 759 784 C1' G B 26 beta 779 785 782 807 C1' G B 27 beta 802 808 805 830 C1' U B 28 beta 825 831 828 850 C1' U B 29 beta 845 851 848 870 C1' A B 30 beta 865 871 868 892 C1' A B 31 beta 887 893 890 914 C1' A B 32 beta 909 915 912 936 C1' C B 33 beta 931 937 934 956 C1' G B 34 beta 951 957 954 979 C1' A B 35 beta 974 980 977 1001 C1' G B 36 beta 996 1002 999 1024 C1' A B 37 beta 1019 1025 1022 1046 C1' C B 38 beta 1041 1047 1044 1066 C1' A B 39 beta 1061 1067 1064 1088 C1' U B 40 beta 1083 1089 1086 1108 C1' C B 41 beta 1103 1109 1106 1128 C1' G B 42 beta 1123 1129 1126 1151 C1' G B 43 beta 1146 1152 1149 1174 C1' C B 44 beta 1169 1175 1172 1194 C1' G B 45 beta 1189 1195 1192 1217 C1' A B 46 beta 1212 1218 1215 1239 C1' G B 47 beta 1234 1240 1237 1262 C1' U B 48 beta 1257 1263 1260 1282 C1' G B 49 beta 1277 1283 1280 1305 C1' C B 50 beta 1300 1306 1303 1325 C1' C B 51 beta 1320 1326 1323 1345 C1' C B 52 beta 1340 1346 1343 1365 C1' U B 53 beta 1360 1366 1363 1385 C1' G B 54 beta 1380 1386 1383 1408 C1' C B 55 beta 1403 1409 1406 1428 C1' G B 56 beta 1423 1429 1426 1451 C1' G B 57 beta 1446 1452 1449 1474 C1' U B 58 beta 1469 1475 1472 1494 C1' C B 59 beta 1489 1495 1492 1514 C1' U B 60 beta 1509 1515 1512 1534 C1' U B 61 beta 1529 1535 1532 1554 C1' C B 62 beta 1549 1555 1552 1574 C1' C B 63 beta 1569 1575 1572 1594 C1' U B 64 beta 1589 1595 1592 1614 C1' G B 65 beta 1609 1615 1612 1637 C1' C B 66 beta 1632 1638 1635 1657 C1' G B 67 beta 1652 1658 1655 1680 C1' A B 68 beta 1675 1681 1678 1702 C1' C B 69 beta 1697 1703 1700 1722 C1' C B 70 beta 1717 1723 1720 1742 C1' G B 71 beta 1737 1743 1740 1765 C1' U B 72 beta 1760 1766 1763 1785 C1' U B 73 beta 1780 1786 1783 1805 C1' A B 74 beta 1800 1806 1803 1827 C1' G B 75 beta 1822 1828 1825 1850 C1' A B 76 beta 1845 1851 1848 1872 C1' G B 77 beta 1867 1873 1870 1895 C1' G B 78 beta 1890 1896 1893 1918 C1' A B 79 beta 1913 1919 1916 1940 C1' C B 80 beta 1935 1941 1938 1960 C1' U B 81 beta 1955 1961 1958 1980 C1' G B 82 beta 1975 1981 1978 2003 C1' G B 83 beta 1998 2004 2001 2026 C1' U B 84 beta 2021 2027 2024 2046 C1' A B 85 beta 2041 2047 2044 2068 C1' A B 86 beta 2063 2069 2066 2090 C1' A B 87 beta 2085 2091 2088 2112 C1' A B 88 beta 2107 2113 2110 2134 C1' C B 89 beta 2129 2135 2132 2154 C1' C B 90 beta 2149 2155 2152 2174 C1' A B 91 beta 2169 2175 2172 2196 C1' C B 92 beta 2191 2197 2194 2216 C1' A B 93 beta 2211 2217 2214 2238 C1' G B 94 beta 2233 2239 2236 2261 C1' G B 95 beta 2256 2262 2259 2284 C1' C B 96 beta 2279 2285 2282 2304 C1' G B 97 beta 2299 2305 2302 2327 C1' A B 98 beta 2322 2328 2325 2349 C1' C B 99 beta 2344 2350 2347 2369 C1' U B 100 beta 2364 2370 2367 2389 C1' G B 101 beta 2384 2390 2387 2412 C1' U B 102 beta 2407 2413 2410 2432 C1' G B 103 beta 2427 2433 2430 2455 C1' G B 104 beta 2450 2456 2453 2478 C1' C B 105 beta 2473 2479 2476 2498 C1' A B 106 beta 2493 2499 2496 2520 C1' U B 107 beta 2515 2521 2518 2540 C1' A B 108 beta 2535 2541 2538 2562 C1' G B 109 beta 2557 2563 2560 2585 C1' A B 110 beta 2580 2586 2583 2607 C1' G B 111 beta 2602 2608 2605 2630 C1' C B 112 beta 2625 2631 2628 2650 C1' A B 113 beta 2645 2651 2648 2672 C1' G B 114 beta 2667 2673 2670 2695 C1' U B 115 beta 2690 2696 2693 2715 C1' C B 116 beta 2710 2716 2713 2735 C1' C B 117 beta 2730 2736 2733 2755 C1' G B 118 beta 2750 2756 2753 2778 C1' G B 119 beta 2773 2779 2776 2801 C1' G B 120 beta 2796 2802 2799 2824 C1' C B 121 beta 2819 2825 2822 2844 C1' A B 122 beta 2839 2845 2842 2866 C1' G B 123 beta 2861 2867 2864 2889 C1' G B 124 beta 2884 2890 2887 2912 C1' A B 125 beta 2907 2913 2910 2934 C1' A B 126 beta 2929 2935 2932 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 11 C2' G A 1 OK 13 9 12 34 C2' C A 2 OK 36 32 35 54 C2' G A 3 OK 56 52 55 77 C2' C A 4 OK 79 75 78 97 C2' C A 5 OK 99 95 98 117 C2' U A 6 OK 119 115 118 129 C2' G A 7 OK 131 127 130 152 C2' G A 8 OK 154 150 153 175 C2' A A 9 OK 177 173 176 197 C2' C A 10 OK 199 195 198 217 C2' U A 11 OK 219 215 218 237 C2' U A 12 OK 239 235 238 257 C2' A A 13 OK 259 255 258 279 C2' A A 14 OK 281 277 280 301 C2' A A 15 OK 303 299 302 323 C2' G A 16 OK 325 321 324 351 C2' C B 6 OK 353 349 352 371 C2' U B 7 OK 373 369 372 391 C2' U B 8 OK 393 389 392 411 C2' U B 9 OK 413 409 412 431 C2' A B 10 OK 433 429 432 453 C2' A B 11 OK 455 451 454 475 C2' G B 12 OK 477 473 476 498 C2' U B 13 OK 500 496 499 518 C2' U B 14 OK 520 516 519 538 C2' G B 15 OK 540 536 539 561 C2' A B 16 OK 563 559 562 583 C2' C B 17 OK 585 581 584 603 C2' G B 18 OK 605 601 604 626 C2' A B 19 OK 628 624 627 648 C2' G B 20 OK 650 646 649 671 C2' G B 21 OK 673 669 672 694 C2' G B 22 OK 696 692 695 717 C2' C B 23 OK 719 715 718 737 C2' A B 24 OK 739 735 738 759 C2' G B 25 OK 761 757 760 782 C2' G B 26 OK 784 780 783 805 C2' G B 27 OK 807 803 806 828 C2' U B 28 OK 830 826 829 848 C2' U B 29 OK 850 846 849 868 C2' A B 30 OK 870 866 869 890 C2' A B 31 OK 892 888 891 912 C2' A B 32 OK 914 910 913 934 C2' C B 33 OK 936 932 935 954 C2' G B 34 OK 956 952 955 977 C2' A B 35 OK 979 975 978 999 C2' G B 36 OK 1001 997 1000 1022 C2' A B 37 OK 1024 1020 1023 1044 C2' C B 38 OK 1046 1042 1045 1064 C2' A B 39 OK 1066 1062 1065 1086 C2' U B 40 OK 1088 1084 1087 1106 C2' C B 41 OK 1108 1104 1107 1126 C2' G B 42 OK 1128 1124 1127 1149 C2' G B 43 OK 1151 1147 1150 1172 C2' C B 44 OK 1174 1170 1173 1192 C2' G B 45 OK 1194 1190 1193 1215 C2' A B 46 OK 1217 1213 1216 1237 C2' G B 47 OK 1239 1235 1238 1260 C2' U B 48 OK 1262 1258 1261 1280 C2' G B 49 OK 1282 1278 1281 1303 C2' C B 50 OK 1305 1301 1304 1323 C2' C B 51 OK 1325 1321 1324 1343 C2' C B 52 OK 1345 1341 1344 1363 C2' U B 53 OK 1365 1361 1364 1383 C2' G B 54 OK 1385 1381 1384 1406 C2' C B 55 OK 1408 1404 1407 1426 C2' G B 56 OK 1428 1424 1427 1449 C2' G B 57 OK 1451 1447 1450 1472 C2' U B 58 OK 1474 1470 1473 1492 C2' C B 59 OK 1494 1490 1493 1512 C2' U B 60 OK 1514 1510 1513 1532 C2' U B 61 OK 1534 1530 1533 1552 C2' C B 62 OK 1554 1550 1553 1572 C2' C B 63 OK 1574 1570 1573 1592 C2' U B 64 OK 1594 1590 1593 1612 C2' G B 65 OK 1614 1610 1613 1635 C2' C B 66 OK 1637 1633 1636 1655 C2' G B 67 OK 1657 1653 1656 1678 C2' A B 68 OK 1680 1676 1679 1700 C2' C B 69 OK 1702 1698 1701 1720 C2' C B 70 OK 1722 1718 1721 1740 C2' G B 71 OK 1742 1738 1741 1763 C2' U B 72 OK 1765 1761 1764 1783 C2' U B 73 OK 1785 1781 1784 1803 C2' A B 74 OK 1805 1801 1804 1825 C2' G B 75 OK 1827 1823 1826 1848 C2' A B 76 OK 1850 1846 1849 1870 C2' G B 77 OK 1872 1868 1871 1893 C2' G B 78 OK 1895 1891 1894 1916 C2' A B 79 OK 1918 1914 1917 1938 C2' C B 80 OK 1940 1936 1939 1958 C2' U B 81 OK 1960 1956 1959 1978 C2' G B 82 OK 1980 1976 1979 2001 C2' G B 83 OK 2003 1999 2002 2024 C2' U B 84 OK 2026 2022 2025 2044 C2' A B 85 OK 2046 2042 2045 2066 C2' A B 86 OK 2068 2064 2067 2088 C2' A B 87 OK 2090 2086 2089 2110 C2' A B 88 OK 2112 2108 2111 2132 C2' C B 89 OK 2134 2130 2133 2152 C2' C B 90 OK 2154 2150 2153 2172 C2' A B 91 OK 2174 2170 2173 2194 C2' C B 92 OK 2196 2192 2195 2214 C2' A B 93 OK 2216 2212 2215 2236 C2' G B 94 OK 2238 2234 2237 2259 C2' G B 95 OK 2261 2257 2260 2282 C2' C B 96 OK 2284 2280 2283 2302 C2' G B 97 OK 2304 2300 2303 2325 C2' A B 98 OK 2327 2323 2326 2347 C2' C B 99 OK 2349 2345 2348 2367 C2' U B 100 OK 2369 2365 2368 2387 C2' G B 101 OK 2389 2385 2388 2410 C2' U B 102 OK 2412 2408 2411 2430 C2' G B 103 OK 2432 2428 2431 2453 C2' G B 104 OK 2455 2451 2454 2476 C2' C B 105 OK 2478 2474 2477 2496 C2' A B 106 OK 2498 2494 2497 2518 C2' U B 107 OK 2520 2516 2519 2538 C2' A B 108 OK 2540 2536 2539 2560 C2' G B 109 OK 2562 2558 2561 2583 C2' A B 110 OK 2585 2581 2584 2605 C2' G B 111 OK 2607 2603 2606 2628 C2' C B 112 OK 2630 2626 2629 2648 C2' A B 113 OK 2650 2646 2649 2670 C2' G B 114 OK 2672 2668 2671 2693 C2' U B 115 OK 2695 2691 2694 2713 C2' C B 116 OK 2715 2711 2714 2733 C2' C B 117 OK 2735 2731 2734 2753 C2' G B 118 OK 2755 2751 2754 2776 C2' G B 119 OK 2778 2774 2777 2799 C2' G B 120 OK 2801 2797 2800 2822 C2' C B 121 OK 2824 2820 2823 2842 C2' A B 122 OK 2844 2840 2843 2864 C2' G B 123 OK 2866 2862 2865 2887 C2' G B 124 OK 2889 2885 2888 2910 C2' A B 125 OK 2912 2908 2911 2932 C2' A B 126 OK 2934 2930 2933 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 9 C3' G A 1 OK 7 10 11 32 C3' C A 2 OK 30 33 34 52 C3' G A 3 OK 50 53 54 75 C3' C A 4 OK 73 76 77 95 C3' C A 5 OK 93 96 97 115 C3' U A 6 OK 113 116 117 127 C3' G A 7 OK 125 128 129 150 C3' G A 8 OK 148 151 152 173 C3' A A 9 OK 171 174 175 195 C3' C A 10 OK 193 196 197 215 C3' U A 11 OK 213 216 217 235 C3' U A 12 OK 233 236 237 255 C3' A A 13 OK 253 256 257 277 C3' A A 14 OK 275 278 279 299 C3' A A 15 OK 297 300 301 321 C3' G A 16 OK 319 322 323 349 C3' C B 6 OK 347 350 351 369 C3' U B 7 OK 367 370 371 389 C3' U B 8 OK 387 390 391 409 C3' U B 9 OK 407 410 411 429 C3' A B 10 OK 427 430 431 451 C3' A B 11 OK 449 452 453 473 C3' G B 12 OK 471 474 475 496 C3' U B 13 OK 494 497 498 516 C3' U B 14 OK 514 517 518 536 C3' G B 15 OK 534 537 538 559 C3' A B 16 OK 557 560 561 581 C3' C B 17 OK 579 582 583 601 C3' G B 18 OK 599 602 603 624 C3' A B 19 OK 622 625 626 646 C3' G B 20 OK 644 647 648 669 C3' G B 21 OK 667 670 671 692 C3' G B 22 OK 690 693 694 715 C3' C B 23 OK 713 716 717 735 C3' A B 24 OK 733 736 737 757 C3' G B 25 OK 755 758 759 780 C3' G B 26 OK 778 781 782 803 C3' G B 27 OK 801 804 805 826 C3' U B 28 OK 824 827 828 846 C3' U B 29 OK 844 847 848 866 C3' A B 30 OK 864 867 868 888 C3' A B 31 OK 886 889 890 910 C3' A B 32 OK 908 911 912 932 C3' C B 33 OK 930 933 934 952 C3' G B 34 OK 950 953 954 975 C3' A B 35 OK 973 976 977 997 C3' G B 36 OK 995 998 999 1020 C3' A B 37 OK 1018 1021 1022 1042 C3' C B 38 OK 1040 1043 1044 1062 C3' A B 39 OK 1060 1063 1064 1084 C3' U B 40 OK 1082 1085 1086 1104 C3' C B 41 OK 1102 1105 1106 1124 C3' G B 42 OK 1122 1125 1126 1147 C3' G B 43 OK 1145 1148 1149 1170 C3' C B 44 OK 1168 1171 1172 1190 C3' G B 45 OK 1188 1191 1192 1213 C3' A B 46 OK 1211 1214 1215 1235 C3' G B 47 OK 1233 1236 1237 1258 C3' U B 48 OK 1256 1259 1260 1278 C3' G B 49 OK 1276 1279 1280 1301 C3' C B 50 OK 1299 1302 1303 1321 C3' C B 51 OK 1319 1322 1323 1341 C3' C B 52 OK 1339 1342 1343 1361 C3' U B 53 OK 1359 1362 1363 1381 C3' G B 54 OK 1379 1382 1383 1404 C3' C B 55 OK 1402 1405 1406 1424 C3' G B 56 OK 1422 1425 1426 1447 C3' G B 57 OK 1445 1448 1449 1470 C3' U B 58 OK 1468 1471 1472 1490 C3' C B 59 OK 1488 1491 1492 1510 C3' U B 60 OK 1508 1511 1512 1530 C3' U B 61 OK 1528 1531 1532 1550 C3' C B 62 OK 1548 1551 1552 1570 C3' C B 63 OK 1568 1571 1572 1590 C3' U B 64 OK 1588 1591 1592 1610 C3' G B 65 OK 1608 1611 1612 1633 C3' C B 66 OK 1631 1634 1635 1653 C3' G B 67 OK 1651 1654 1655 1676 C3' A B 68 OK 1674 1677 1678 1698 C3' C B 69 OK 1696 1699 1700 1718 C3' C B 70 OK 1716 1719 1720 1738 C3' G B 71 OK 1736 1739 1740 1761 C3' U B 72 OK 1759 1762 1763 1781 C3' U B 73 OK 1779 1782 1783 1801 C3' A B 74 OK 1799 1802 1803 1823 C3' G B 75 OK 1821 1824 1825 1846 C3' A B 76 OK 1844 1847 1848 1868 C3' G B 77 OK 1866 1869 1870 1891 C3' G B 78 OK 1889 1892 1893 1914 C3' A B 79 OK 1912 1915 1916 1936 C3' C B 80 OK 1934 1937 1938 1956 C3' U B 81 OK 1954 1957 1958 1976 C3' G B 82 OK 1974 1977 1978 1999 C3' G B 83 OK 1997 2000 2001 2022 C3' U B 84 OK 2020 2023 2024 2042 C3' A B 85 OK 2040 2043 2044 2064 C3' A B 86 OK 2062 2065 2066 2086 C3' A B 87 OK 2084 2087 2088 2108 C3' A B 88 OK 2106 2109 2110 2130 C3' C B 89 OK 2128 2131 2132 2150 C3' C B 90 OK 2148 2151 2152 2170 C3' A B 91 OK 2168 2171 2172 2192 C3' C B 92 OK 2190 2193 2194 2212 C3' A B 93 OK 2210 2213 2214 2234 C3' G B 94 OK 2232 2235 2236 2257 C3' G B 95 OK 2255 2258 2259 2280 C3' C B 96 OK 2278 2281 2282 2300 C3' G B 97 OK 2298 2301 2302 2323 C3' A B 98 OK 2321 2324 2325 2345 C3' C B 99 OK 2343 2346 2347 2365 C3' U B 100 OK 2363 2366 2367 2385 C3' G B 101 OK 2383 2386 2387 2408 C3' U B 102 OK 2406 2409 2410 2428 C3' G B 103 OK 2426 2429 2430 2451 C3' G B 104 OK 2449 2452 2453 2474 C3' C B 105 OK 2472 2475 2476 2494 C3' A B 106 OK 2492 2495 2496 2516 C3' U B 107 OK 2514 2517 2518 2536 C3' A B 108 OK 2534 2537 2538 2558 C3' G B 109 OK 2556 2559 2560 2581 C3' A B 110 OK 2579 2582 2583 2603 C3' G B 111 OK 2601 2604 2605 2626 C3' C B 112 OK 2624 2627 2628 2646 C3' A B 113 OK 2644 2647 2648 2668 C3' G B 114 OK 2666 2669 2670 2691 C3' U B 115 OK 2689 2692 2693 2711 C3' C B 116 OK 2709 2712 2713 2731 C3' C B 117 OK 2729 2732 2733 2751 C3' G B 118 OK 2749 2752 2753 2774 C3' G B 119 OK 2772 2775 2776 2797 C3' G B 120 OK 2795 2798 2799 2820 C3' C B 121 OK 2818 2821 2822 2840 C3' A B 122 OK 2838 2841 2842 2862 C3' G B 123 OK 2860 2863 2864 2885 C3' G B 124 OK 2883 2886 2887 2908 C3' A B 125 OK 2906 2909 2910 2930 C3' A B 126 OK 2928 2931 2932 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 7 C4' G A 1 OK 9 6 8 30 C4' C A 2 OK 32 29 31 50 C4' G A 3 OK 52 49 51 73 C4' C A 4 OK 75 72 74 93 C4' C A 5 OK 95 92 94 113 C4' U A 6 OK 115 112 114 125 C4' G A 7 OK 127 124 126 148 C4' G A 8 OK 150 147 149 171 C4' A A 9 OK 173 170 172 193 C4' C A 10 OK 195 192 194 213 C4' U A 11 OK 215 212 214 233 C4' U A 12 OK 235 232 234 253 C4' A A 13 OK 255 252 254 275 C4' A A 14 OK 277 274 276 297 C4' A A 15 OK 299 296 298 319 C4' G A 16 OK 321 318 320 347 C4' C B 6 OK 349 346 348 367 C4' U B 7 OK 369 366 368 387 C4' U B 8 OK 389 386 388 407 C4' U B 9 OK 409 406 408 427 C4' A B 10 OK 429 426 428 449 C4' A B 11 OK 451 448 450 471 C4' G B 12 OK 473 470 472 494 C4' U B 13 OK 496 493 495 514 C4' U B 14 OK 516 513 515 534 C4' G B 15 OK 536 533 535 557 C4' A B 16 OK 559 556 558 579 C4' C B 17 OK 581 578 580 599 C4' G B 18 OK 601 598 600 622 C4' A B 19 OK 624 621 623 644 C4' G B 20 OK 646 643 645 667 C4' G B 21 OK 669 666 668 690 C4' G B 22 OK 692 689 691 713 C4' C B 23 OK 715 712 714 733 C4' A B 24 OK 735 732 734 755 C4' G B 25 OK 757 754 756 778 C4' G B 26 OK 780 777 779 801 C4' G B 27 OK 803 800 802 824 C4' U B 28 OK 826 823 825 844 C4' U B 29 OK 846 843 845 864 C4' A B 30 OK 866 863 865 886 C4' A B 31 OK 888 885 887 908 C4' A B 32 OK 910 907 909 930 C4' C B 33 OK 932 929 931 950 C4' G B 34 OK 952 949 951 973 C4' A B 35 OK 975 972 974 995 C4' G B 36 OK 997 994 996 1018 C4' A B 37 OK 1020 1017 1019 1040 C4' C B 38 OK 1042 1039 1041 1060 C4' A B 39 OK 1062 1059 1061 1082 C4' U B 40 OK 1084 1081 1083 1102 C4' C B 41 OK 1104 1101 1103 1122 C4' G B 42 OK 1124 1121 1123 1145 C4' G B 43 OK 1147 1144 1146 1168 C4' C B 44 OK 1170 1167 1169 1188 C4' G B 45 OK 1190 1187 1189 1211 C4' A B 46 OK 1213 1210 1212 1233 C4' G B 47 OK 1235 1232 1234 1256 C4' U B 48 OK 1258 1255 1257 1276 C4' G B 49 OK 1278 1275 1277 1299 C4' C B 50 OK 1301 1298 1300 1319 C4' C B 51 OK 1321 1318 1320 1339 C4' C B 52 OK 1341 1338 1340 1359 C4' U B 53 OK 1361 1358 1360 1379 C4' G B 54 OK 1381 1378 1380 1402 C4' C B 55 OK 1404 1401 1403 1422 C4' G B 56 OK 1424 1421 1423 1445 C4' G B 57 OK 1447 1444 1446 1468 C4' U B 58 OK 1470 1467 1469 1488 C4' C B 59 OK 1490 1487 1489 1508 C4' U B 60 OK 1510 1507 1509 1528 C4' U B 61 OK 1530 1527 1529 1548 C4' C B 62 OK 1550 1547 1549 1568 C4' C B 63 OK 1570 1567 1569 1588 C4' U B 64 OK 1590 1587 1589 1608 C4' G B 65 OK 1610 1607 1609 1631 C4' C B 66 OK 1633 1630 1632 1651 C4' G B 67 OK 1653 1650 1652 1674 C4' A B 68 OK 1676 1673 1675 1696 C4' C B 69 OK 1698 1695 1697 1716 C4' C B 70 OK 1718 1715 1717 1736 C4' G B 71 OK 1738 1735 1737 1759 C4' U B 72 OK 1761 1758 1760 1779 C4' U B 73 OK 1781 1778 1780 1799 C4' A B 74 OK 1801 1798 1800 1821 C4' G B 75 OK 1823 1820 1822 1844 C4' A B 76 OK 1846 1843 1845 1866 C4' G B 77 OK 1868 1865 1867 1889 C4' G B 78 OK 1891 1888 1890 1912 C4' A B 79 OK 1914 1911 1913 1934 C4' C B 80 OK 1936 1933 1935 1954 C4' U B 81 OK 1956 1953 1955 1974 C4' G B 82 OK 1976 1973 1975 1997 C4' G B 83 OK 1999 1996 1998 2020 C4' U B 84 OK 2022 2019 2021 2040 C4' A B 85 OK 2042 2039 2041 2062 C4' A B 86 OK 2064 2061 2063 2084 C4' A B 87 OK 2086 2083 2085 2106 C4' A B 88 OK 2108 2105 2107 2128 C4' C B 89 OK 2130 2127 2129 2148 C4' C B 90 OK 2150 2147 2149 2168 C4' A B 91 OK 2170 2167 2169 2190 C4' C B 92 OK 2192 2189 2191 2210 C4' A B 93 OK 2212 2209 2211 2232 C4' G B 94 OK 2234 2231 2233 2255 C4' G B 95 OK 2257 2254 2256 2278 C4' C B 96 OK 2280 2277 2279 2298 C4' G B 97 OK 2300 2297 2299 2321 C4' A B 98 OK 2323 2320 2322 2343 C4' C B 99 OK 2345 2342 2344 2363 C4' U B 100 OK 2365 2362 2364 2383 C4' G B 101 OK 2385 2382 2384 2406 C4' U B 102 OK 2408 2405 2407 2426 C4' G B 103 OK 2428 2425 2427 2449 C4' G B 104 OK 2451 2448 2450 2472 C4' C B 105 OK 2474 2471 2473 2492 C4' A B 106 OK 2494 2491 2493 2514 C4' U B 107 OK 2516 2513 2515 2534 C4' A B 108 OK 2536 2533 2535 2556 C4' G B 109 OK 2558 2555 2557 2579 C4' A B 110 OK 2581 2578 2580 2601 C4' G B 111 OK 2603 2600 2602 2624 C4' C B 112 OK 2626 2623 2625 2644 C4' A B 113 OK 2646 2643 2645 2666 C4' G B 114 OK 2668 2665 2667 2689 C4' U B 115 OK 2691 2688 2690 2709 C4' C B 116 OK 2711 2708 2710 2729 C4' C B 117 OK 2731 2728 2730 2749 C4' G B 118 OK 2751 2748 2750 2772 C4' G B 119 OK 2774 2771 2773 2795 C4' G B 120 OK 2797 2794 2796 2818 C4' C B 121 OK 2820 2817 2819 2838 C4' A B 122 OK 2840 2837 2839 2860 C4' G B 123 OK 2862 2859 2861 2883 C4' G B 124 OK 2885 2882 2884 2906 C4' A B 125 OK 2908 2905 2907 2928 C4' A B 126 OK 2930 2927 2929 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 6 C5' G A 1 5 7 29 C5' C A 2 28 30 49 C5' G A 3 48 50 72 C5' C A 4 71 73 92 C5' C A 5 91 93 112 C5' U A 6 111 113 124 C5' G A 7 123 125 147 C5' G A 8 146 148 170 C5' A A 9 169 171 192 C5' C A 10 191 193 212 C5' U A 11 211 213 232 C5' U A 12 231 233 252 C5' A A 13 251 253 274 C5' A A 14 273 275 296 C5' A A 15 295 297 318 C5' G A 16 317 319 346 C5' C B 6 345 347 366 C5' U B 7 365 367 386 C5' U B 8 385 387 406 C5' U B 9 405 407 426 C5' A B 10 425 427 448 C5' A B 11 447 449 470 C5' G B 12 469 471 493 C5' U B 13 492 494 513 C5' U B 14 512 514 533 C5' G B 15 532 534 556 C5' A B 16 555 557 578 C5' C B 17 577 579 598 C5' G B 18 597 599 621 C5' A B 19 620 622 643 C5' G B 20 642 644 666 C5' G B 21 665 667 689 C5' G B 22 688 690 712 C5' C B 23 711 713 732 C5' A B 24 731 733 754 C5' G B 25 753 755 777 C5' G B 26 776 778 800 C5' G B 27 799 801 823 C5' U B 28 822 824 843 C5' U B 29 842 844 863 C5' A B 30 862 864 885 C5' A B 31 884 886 907 C5' A B 32 906 908 929 C5' C B 33 928 930 949 C5' G B 34 948 950 972 C5' A B 35 971 973 994 C5' G B 36 993 995 1017 C5' A B 37 1016 1018 1039 C5' C B 38 1038 1040 1059 C5' A B 39 1058 1060 1081 C5' U B 40 1080 1082 1101 C5' C B 41 1100 1102 1121 C5' G B 42 1120 1122 1144 C5' G B 43 1143 1145 1167 C5' C B 44 1166 1168 1187 C5' G B 45 1186 1188 1210 C5' A B 46 1209 1211 1232 C5' G B 47 1231 1233 1255 C5' U B 48 1254 1256 1275 C5' G B 49 1274 1276 1298 C5' C B 50 1297 1299 1318 C5' C B 51 1317 1319 1338 C5' C B 52 1337 1339 1358 C5' U B 53 1357 1359 1378 C5' G B 54 1377 1379 1401 C5' C B 55 1400 1402 1421 C5' G B 56 1420 1422 1444 C5' G B 57 1443 1445 1467 C5' U B 58 1466 1468 1487 C5' C B 59 1486 1488 1507 C5' U B 60 1506 1508 1527 C5' U B 61 1526 1528 1547 C5' C B 62 1546 1548 1567 C5' C B 63 1566 1568 1587 C5' U B 64 1586 1588 1607 C5' G B 65 1606 1608 1630 C5' C B 66 1629 1631 1650 C5' G B 67 1649 1651 1673 C5' A B 68 1672 1674 1695 C5' C B 69 1694 1696 1715 C5' C B 70 1714 1716 1735 C5' G B 71 1734 1736 1758 C5' U B 72 1757 1759 1778 C5' U B 73 1777 1779 1798 C5' A B 74 1797 1799 1820 C5' G B 75 1819 1821 1843 C5' A B 76 1842 1844 1865 C5' G B 77 1864 1866 1888 C5' G B 78 1887 1889 1911 C5' A B 79 1910 1912 1933 C5' C B 80 1932 1934 1953 C5' U B 81 1952 1954 1973 C5' G B 82 1972 1974 1996 C5' G B 83 1995 1997 2019 C5' U B 84 2018 2020 2039 C5' A B 85 2038 2040 2061 C5' A B 86 2060 2062 2083 C5' A B 87 2082 2084 2105 C5' A B 88 2104 2106 2127 C5' C B 89 2126 2128 2147 C5' C B 90 2146 2148 2167 C5' A B 91 2166 2168 2189 C5' C B 92 2188 2190 2209 C5' A B 93 2208 2210 2231 C5' G B 94 2230 2232 2254 C5' G B 95 2253 2255 2277 C5' C B 96 2276 2278 2297 C5' G B 97 2296 2298 2320 C5' A B 98 2319 2321 2342 C5' C B 99 2341 2343 2362 C5' U B 100 2361 2363 2382 C5' G B 101 2381 2383 2405 C5' U B 102 2404 2406 2425 C5' G B 103 2424 2426 2448 C5' G B 104 2447 2449 2471 C5' C B 105 2470 2472 2491 C5' A B 106 2490 2492 2513 C5' U B 107 2512 2514 2533 C5' A B 108 2532 2534 2555 C5' G B 109 2554 2556 2578 C5' A B 110 2577 2579 2600 C5' G B 111 2599 2601 2623 C5' C B 112 2622 2624 2643 C5' A B 113 2642 2644 2665 C5' G B 114 2664 2666 2688 C5' U B 115 2687 2689 2708 C5' C B 116 2707 2709 2728 C5' C B 117 2727 2729 2748 C5' G B 118 2747 2749 2771 C5' G B 119 2770 2772 2794 C5' G B 120 2793 2795 2817 C5' C B 121 2816 2818 2837 C5' A B 122 2836 2838 2859 C5' G B 123 2858 2860 2882 C5' G B 124 2881 2883 2905 C5' A B 125 2904 2906 2927 C5' A B 126 2926 2928 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 2 P G A 1 distorted distorted 1 3 4 5 25 P C A 2 distorted distorted 10 26 27 28 45 P G A 3 distorted distorted 33 46 47 48 68 P C A 4 distorted distorted 53 69 70 71 88 P C A 5 distorted distorted 76 89 90 91 108 P U A 6 distorted distorted 96 109 110 111 120 P G A 7 distorted distorted 116 121 122 123 143 P G A 8 distorted distorted 128 144 145 146 166 P A A 9 distorted distorted 151 167 168 169 188 P C A 10 distorted distorted 174 189 190 191 208 P U A 11 distorted distorted 196 209 210 211 228 P U A 12 distorted distorted 216 229 230 231 248 P A A 13 distorted distorted 236 249 250 251 270 P A A 14 distorted distorted 256 271 272 273 292 P A A 15 distorted distorted 278 293 294 295 314 P G A 16 distorted distorted 300 315 316 317 337 P C A 17 distorted distorted 322 338 339 340 342 P C B 6 distorted distorted 343 344 345 362 P U B 7 distorted distorted 350 363 364 365 382 P U B 8 distorted distorted 370 383 384 385 402 P U B 9 distorted distorted 390 403 404 405 422 P A B 10 distorted distorted 410 423 424 425 444 P A B 11 distorted distorted 430 445 446 447 466 P G B 12 distorted distorted 452 467 468 469 489 P U B 13 distorted distorted 474 490 491 492 509 P U B 14 distorted distorted 497 510 511 512 529 P G B 15 distorted distorted 517 530 531 532 552 P A B 16 distorted distorted 537 553 554 555 574 P C B 17 distorted distorted 560 575 576 577 594 P G B 18 distorted distorted 582 595 596 597 617 P A B 19 distorted distorted 602 618 619 620 639 P G B 20 distorted distorted 625 640 641 642 662 P G B 21 distorted distorted 647 663 664 665 685 P G B 22 distorted distorted 670 686 687 688 708 P C B 23 distorted distorted 693 709 710 711 728 P A B 24 distorted distorted 716 729 730 731 750 P G B 25 distorted distorted 736 751 752 753 773 P G B 26 distorted distorted 758 774 775 776 796 P G B 27 distorted distorted 781 797 798 799 819 P U B 28 distorted distorted 804 820 821 822 839 P U B 29 distorted distorted 827 840 841 842 859 P A B 30 distorted distorted 847 860 861 862 881 P A B 31 distorted distorted 867 882 883 884 903 P A B 32 distorted distorted 889 904 905 906 925 P C B 33 distorted distorted 911 926 927 928 945 P G B 34 distorted distorted 933 946 947 948 968 P A B 35 distorted distorted 953 969 970 971 990 P G B 36 distorted distorted 976 991 992 993 1013 P A B 37 distorted distorted 998 1014 1015 1016 1035 P C B 38 distorted distorted 1021 1036 1037 1038 1055 P A B 39 distorted distorted 1043 1056 1057 1058 1077 P U B 40 distorted distorted 1063 1078 1079 1080 1097 P C B 41 distorted distorted 1085 1098 1099 1100 1117 P G B 42 distorted distorted 1105 1118 1119 1120 1140 P G B 43 distorted distorted 1125 1141 1142 1143 1163 P C B 44 distorted distorted 1148 1164 1165 1166 1183 P G B 45 distorted distorted 1171 1184 1185 1186 1206 P A B 46 distorted distorted 1191 1207 1208 1209 1228 P G B 47 distorted distorted 1214 1229 1230 1231 1251 P U B 48 distorted distorted 1236 1252 1253 1254 1271 P G B 49 distorted distorted 1259 1272 1273 1274 1294 P C B 50 distorted distorted 1279 1295 1296 1297 1314 P C B 51 distorted distorted 1302 1315 1316 1317 1334 P C B 52 distorted distorted 1322 1335 1336 1337 1354 P U B 53 distorted distorted 1342 1355 1356 1357 1374 P G B 54 distorted distorted 1362 1375 1376 1377 1397 P C B 55 distorted distorted 1382 1398 1399 1400 1417 P G B 56 distorted distorted 1405 1418 1419 1420 1440 P G B 57 distorted distorted 1425 1441 1442 1443 1463 P U B 58 distorted distorted 1448 1464 1465 1466 1483 P C B 59 distorted distorted 1471 1484 1485 1486 1503 P U B 60 distorted distorted 1491 1504 1505 1506 1523 P U B 61 distorted distorted 1511 1524 1525 1526 1543 P C B 62 distorted distorted 1531 1544 1545 1546 1563 P C B 63 distorted distorted 1551 1564 1565 1566 1583 P U B 64 distorted distorted 1571 1584 1585 1586 1603 P G B 65 distorted distorted 1591 1604 1605 1606 1626 P C B 66 distorted distorted 1611 1627 1628 1629 1646 P G B 67 distorted distorted 1634 1647 1648 1649 1669 P A B 68 distorted distorted 1654 1670 1671 1672 1691 P C B 69 distorted distorted 1677 1692 1693 1694 1711 P C B 70 distorted distorted 1699 1712 1713 1714 1731 P G B 71 distorted distorted 1719 1732 1733 1734 1754 P U B 72 distorted distorted 1739 1755 1756 1757 1774 P U B 73 distorted distorted 1762 1775 1776 1777 1794 P A B 74 distorted distorted 1782 1795 1796 1797 1816 P G B 75 distorted distorted 1802 1817 1818 1819 1839 P A B 76 distorted distorted 1824 1840 1841 1842 1861 P G B 77 distorted distorted 1847 1862 1863 1864 1884 P G B 78 distorted distorted 1869 1885 1886 1887 1907 P A B 79 distorted distorted 1892 1908 1909 1910 1929 P C B 80 distorted distorted 1915 1930 1931 1932 1949 P U B 81 distorted distorted 1937 1950 1951 1952 1969 P G B 82 distorted distorted 1957 1970 1971 1972 1992 P G B 83 distorted distorted 1977 1993 1994 1995 2015 P U B 84 distorted distorted 2000 2016 2017 2018 2035 P A B 85 distorted distorted 2023 2036 2037 2038 2057 P A B 86 distorted distorted 2043 2058 2059 2060 2079 P A B 87 distorted distorted 2065 2080 2081 2082 2101 P A B 88 distorted distorted 2087 2102 2103 2104 2123 P C B 89 distorted distorted 2109 2124 2125 2126 2143 P C B 90 distorted distorted 2131 2144 2145 2146 2163 P A B 91 distorted distorted 2151 2164 2165 2166 2185 P C B 92 distorted distorted 2171 2186 2187 2188 2205 P A B 93 distorted distorted 2193 2206 2207 2208 2227 P G B 94 distorted distorted 2213 2228 2229 2230 2250 P G B 95 distorted distorted 2235 2251 2252 2253 2273 P C B 96 distorted distorted 2258 2274 2275 2276 2293 P G B 97 distorted distorted 2281 2294 2295 2296 2316 P A B 98 distorted distorted 2301 2317 2318 2319 2338 P C B 99 distorted distorted 2324 2339 2340 2341 2358 P U B 100 distorted distorted 2346 2359 2360 2361 2378 P G B 101 distorted distorted 2366 2379 2380 2381 2401 P U B 102 distorted distorted 2386 2402 2403 2404 2421 P G B 103 distorted distorted 2409 2422 2423 2424 2444 P G B 104 distorted distorted 2429 2445 2446 2447 2467 P C B 105 distorted distorted 2452 2468 2469 2470 2487 P A B 106 distorted distorted 2475 2488 2489 2490 2509 P U B 107 distorted distorted 2495 2510 2511 2512 2529 P A B 108 distorted distorted 2517 2530 2531 2532 2551 P G B 109 distorted distorted 2537 2552 2553 2554 2574 P A B 110 distorted distorted 2559 2575 2576 2577 2596 P G B 111 distorted distorted 2582 2597 2598 2599 2619 P C B 112 distorted distorted 2604 2620 2621 2622 2639 P A B 113 distorted distorted 2627 2640 2641 2642 2661 P G B 114 distorted distorted 2647 2662 2663 2664 2684 P U B 115 distorted distorted 2669 2685 2686 2687 2704 P C B 116 distorted distorted 2692 2705 2706 2707 2724 P C B 117 distorted distorted 2712 2725 2726 2727 2744 P G B 118 distorted distorted 2732 2745 2746 2747 2767 P G B 119 distorted distorted 2752 2768 2769 2770 2790 P G B 120 distorted distorted 2775 2791 2792 2793 2813 P C B 121 distorted distorted 2798 2814 2815 2816 2833 P A B 122 distorted distorted 2821 2834 2835 2836 2855 P G B 123 distorted distorted 2841 2856 2857 2858 2878 P G B 124 distorted distorted 2863 2879 2880 2881 2901 P A B 125 distorted distorted 2886 2902 2903 2904 2923 P A B 126 distorted distorted 2909 2924 2925 2926 ---------------------------------------------------------------------------------