ID code: '4KQY' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 9 C1' G A 0 beta 4 10 7 32 C1' U A 1 beta 27 33 30 52 C1' U A 2 beta 47 53 50 72 C1' C A 3 beta 67 73 70 92 C1' U A 4 beta 87 93 90 112 C1' U A 5 beta 107 113 110 132 C1' A A 6 beta 127 133 130 154 C1' U A 7 beta 149 155 152 174 C1' C A 8 beta 169 175 172 194 C1' A A 9 beta 189 195 192 216 C1' A A 10 beta 211 217 214 238 C1' G A 11 beta 233 239 236 261 C1' A A 12 beta 256 262 259 283 C1' G A 13 beta 278 284 281 306 C1' A A 14 beta 301 307 304 328 C1' A A 15 beta 323 329 326 350 C1' G A 16 beta 345 351 348 373 C1' C A 17 beta 368 374 371 393 C1' A A 18 beta 388 394 391 415 C1' G A 19 beta 410 416 413 438 C1' A A 20 beta 433 439 436 460 C1' G A 21 beta 455 461 458 483 C1' G A 22 beta 478 484 481 506 C1' G A 23 beta 501 507 504 529 C1' A A 24 beta 524 530 527 551 C1' C A 25 beta 546 552 549 571 C1' U A 26 beta 566 572 569 591 C1' G A 27 beta 586 592 589 614 C1' G A 28 beta 609 615 612 637 C1' C A 29 beta 632 638 635 657 C1' C A 30 beta 652 658 655 677 C1' C A 31 beta 672 678 675 697 C1' G A 32 beta 692 698 695 720 C1' A A 33 beta 715 721 718 742 C1' C A 34 beta 737 743 740 762 C1' G A 35 beta 757 763 760 785 C1' A A 36 beta 780 786 783 807 C1' A A 37 beta 802 808 805 829 C1' G A 38 beta 824 830 827 852 C1' C A 39 beta 847 853 850 872 C1' U A 40 beta 867 873 870 892 C1' U A 41 beta 887 893 890 912 C1' C A 42 beta 907 913 910 932 C1' A A 43 beta 927 933 930 954 C1' G A 44 beta 949 955 952 977 C1' C A 45 beta 972 978 975 997 C1' A A 46 beta 992 998 995 1019 C1' A A 47 beta 1014 1020 1017 1041 C1' C A 48 beta 1036 1042 1039 1061 C1' C A 49 beta 1056 1062 1059 1081 C1' G A 50 beta 1076 1082 1079 1104 C1' G A 51 beta 1099 1105 1102 1127 C1' U A 52 beta 1122 1128 1125 1147 C1' G A 53 beta 1142 1148 1145 1170 C1' U A 54 beta 1165 1171 1168 1190 C1' A A 55 beta 1185 1191 1188 1212 C1' A A 56 beta 1207 1213 1210 1234 C1' U A 57 beta 1229 1235 1232 1254 C1' G A 58 beta 1249 1255 1252 1277 C1' G A 59 beta 1272 1278 1275 1300 C1' C A 60 beta 1295 1301 1298 1320 C1' G A 61 beta 1315 1321 1318 1343 C1' A A 62 beta 1338 1344 1341 1365 C1' A A 63 beta 1360 1366 1363 1387 C1' A A 64 beta 1382 1388 1385 1409 C1' G A 65 beta 1404 1410 1407 1432 C1' C A 66 beta 1427 1433 1430 1452 C1' C A 67 beta 1447 1453 1450 1472 C1' A A 68 beta 1467 1473 1470 1494 C1' U A 69 beta 1489 1495 1492 1514 C1' G A 70 beta 1509 1515 1512 1537 C1' A A 71 beta 1532 1538 1535 1559 C1' C A 72 beta 1554 1560 1557 1579 C1' C A 73 beta 1574 1580 1577 1599 C1' A A 74 beta 1594 1600 1597 1621 C1' A A 75 beta 1616 1622 1619 1643 C1' G A 76 beta 1638 1644 1641 1666 C1' G A 77 beta 1661 1667 1664 1689 C1' U A 78 beta 1684 1690 1687 1709 C1' G A 79 beta 1704 1710 1707 1732 C1' C A 80 beta 1727 1733 1730 1752 C1' U A 81 beta 1747 1753 1750 1772 C1' A A 82 beta 1767 1773 1770 1794 C1' A A 83 beta 1789 1795 1792 1816 C1' A A 84 beta 1811 1817 1814 1838 C1' U A 85 beta 1833 1839 1836 1858 C1' C A 86 beta 1853 1859 1856 1878 C1' C A 87 beta 1873 1879 1876 1898 C1' A A 88 beta 1893 1899 1896 1920 C1' G A 89 beta 1915 1921 1918 1943 C1' C A 90 beta 1938 1944 1941 1963 C1' A A 91 beta 1958 1964 1961 1985 C1' A A 92 beta 1980 1986 1983 2007 C1' G A 93 beta 2002 2008 2005 2030 C1' C A 94 beta 2025 2031 2028 2050 C1' U A 95 beta 2045 2051 2048 2070 C1' C A 96 beta 2065 2071 2068 2090 C1' G A 97 beta 2085 2091 2088 2113 C1' A A 98 beta 2108 2114 2111 2135 C1' A A 99 beta 2130 2136 2133 2157 C1' C A 100 beta 2152 2158 2155 2177 C1' A A 101 beta 2172 2178 2175 2199 C1' G A 102 beta 2194 2200 2197 2222 C1' C A 103 beta 2217 2223 2220 2242 C1' U A 104 beta 2237 2243 2240 2262 C1' U A 105 beta 2257 2263 2260 2282 C1' G A 106 beta 2277 2283 2280 2305 C1' G A 107 beta 2300 2306 2303 2328 C1' A A 108 beta 2323 2329 2326 2350 C1' A A 109 beta 2345 2351 2348 2372 C1' G A 110 beta 2367 2373 2370 2395 C1' A A 111 beta 2390 2396 2393 2417 C1' U A 112 beta 2412 2418 2415 2437 C1' A A 113 beta 2432 2438 2435 2459 C1' A A 114 beta 2454 2460 2457 2481 C1' G A 115 beta 2476 2482 2479 2504 C1' A A 116 beta 2499 2505 2502 2526 C1' A A 117 beta 2521 2527 2524 2548 C1' C A 118 beta 2543 2549 2546 2574 C1' SAM A 201 beta 2569 2575 2572 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 7 C2' G A 0 OK 9 5 8 30 C2' U A 1 OK 32 28 31 50 C2' U A 2 OK 52 48 51 70 C2' C A 3 OK 72 68 71 90 C2' U A 4 OK 92 88 91 110 C2' U A 5 OK 112 108 111 130 C2' A A 6 OK 132 128 131 152 C2' U A 7 OK 154 150 153 172 C2' C A 8 OK 174 170 173 192 C2' A A 9 OK 194 190 193 214 C2' A A 10 OK 216 212 215 236 C2' G A 11 OK 238 234 237 259 C2' A A 12 OK 261 257 260 281 C2' G A 13 OK 283 279 282 304 C2' A A 14 OK 306 302 305 326 C2' A A 15 OK 328 324 327 348 C2' G A 16 OK 350 346 349 371 C2' C A 17 OK 373 369 372 391 C2' A A 18 OK 393 389 392 413 C2' G A 19 OK 415 411 414 436 C2' A A 20 OK 438 434 437 458 C2' G A 21 OK 460 456 459 481 C2' G A 22 OK 483 479 482 504 C2' G A 23 OK 506 502 505 527 C2' A A 24 OK 529 525 528 549 C2' C A 25 OK 551 547 550 569 C2' U A 26 OK 571 567 570 589 C2' G A 27 OK 591 587 590 612 C2' G A 28 OK 614 610 613 635 C2' C A 29 OK 637 633 636 655 C2' C A 30 OK 657 653 656 675 C2' C A 31 OK 677 673 676 695 C2' G A 32 OK 697 693 696 718 C2' A A 33 OK 720 716 719 740 C2' C A 34 OK 742 738 741 760 C2' G A 35 OK 762 758 761 783 C2' A A 36 OK 785 781 784 805 C2' A A 37 OK 807 803 806 827 C2' G A 38 OK 829 825 828 850 C2' C A 39 OK 852 848 851 870 C2' U A 40 OK 872 868 871 890 C2' U A 41 OK 892 888 891 910 C2' C A 42 OK 912 908 911 930 C2' A A 43 OK 932 928 931 952 C2' G A 44 OK 954 950 953 975 C2' C A 45 OK 977 973 976 995 C2' A A 46 OK 997 993 996 1017 C2' A A 47 OK 1019 1015 1018 1039 C2' C A 48 OK 1041 1037 1040 1059 C2' C A 49 OK 1061 1057 1060 1079 C2' G A 50 OK 1081 1077 1080 1102 C2' G A 51 OK 1104 1100 1103 1125 C2' U A 52 OK 1127 1123 1126 1145 C2' G A 53 OK 1147 1143 1146 1168 C2' U A 54 OK 1170 1166 1169 1188 C2' A A 55 OK 1190 1186 1189 1210 C2' A A 56 OK 1212 1208 1211 1232 C2' U A 57 OK 1234 1230 1233 1252 C2' G A 58 OK 1254 1250 1253 1275 C2' G A 59 OK 1277 1273 1276 1298 C2' C A 60 OK 1300 1296 1299 1318 C2' G A 61 OK 1320 1316 1319 1341 C2' A A 62 OK 1343 1339 1342 1363 C2' A A 63 OK 1365 1361 1364 1385 C2' A A 64 OK 1387 1383 1386 1407 C2' G A 65 OK 1409 1405 1408 1430 C2' C A 66 OK 1432 1428 1431 1450 C2' C A 67 OK 1452 1448 1451 1470 C2' A A 68 OK 1472 1468 1471 1492 C2' U A 69 OK 1494 1490 1493 1512 C2' G A 70 OK 1514 1510 1513 1535 C2' A A 71 OK 1537 1533 1536 1557 C2' C A 72 OK 1559 1555 1558 1577 C2' C A 73 OK 1579 1575 1578 1597 C2' A A 74 OK 1599 1595 1598 1619 C2' A A 75 OK 1621 1617 1620 1641 C2' G A 76 OK 1643 1639 1642 1664 C2' G A 77 OK 1666 1662 1665 1687 C2' U A 78 OK 1689 1685 1688 1707 C2' G A 79 OK 1709 1705 1708 1730 C2' C A 80 OK 1732 1728 1731 1750 C2' U A 81 OK 1752 1748 1751 1770 C2' A A 82 OK 1772 1768 1771 1792 C2' A A 83 OK 1794 1790 1793 1814 C2' A A 84 OK 1816 1812 1815 1836 C2' U A 85 OK 1838 1834 1837 1856 C2' C A 86 OK 1858 1854 1857 1876 C2' C A 87 OK 1878 1874 1877 1896 C2' A A 88 OK 1898 1894 1897 1918 C2' G A 89 OK 1920 1916 1919 1941 C2' C A 90 OK 1943 1939 1942 1961 C2' A A 91 OK 1963 1959 1962 1983 C2' A A 92 OK 1985 1981 1984 2005 C2' G A 93 OK 2007 2003 2006 2028 C2' C A 94 OK 2030 2026 2029 2048 C2' U A 95 OK 2050 2046 2049 2068 C2' C A 96 OK 2070 2066 2069 2088 C2' G A 97 OK 2090 2086 2089 2111 C2' A A 98 OK 2113 2109 2112 2133 C2' A A 99 OK 2135 2131 2134 2155 C2' C A 100 OK 2157 2153 2156 2175 C2' A A 101 OK 2177 2173 2176 2197 C2' G A 102 OK 2199 2195 2198 2220 C2' C A 103 OK 2222 2218 2221 2240 C2' U A 104 OK 2242 2238 2241 2260 C2' U A 105 OK 2262 2258 2261 2280 C2' G A 106 OK 2282 2278 2281 2303 C2' G A 107 OK 2305 2301 2304 2326 C2' A A 108 OK 2328 2324 2327 2348 C2' A A 109 OK 2350 2346 2349 2370 C2' G A 110 OK 2372 2368 2371 2393 C2' A A 111 OK 2395 2391 2394 2415 C2' U A 112 OK 2417 2413 2416 2435 C2' A A 113 OK 2437 2433 2436 2457 C2' A A 114 OK 2459 2455 2458 2479 C2' G A 115 OK 2481 2477 2480 2502 C2' A A 116 OK 2504 2500 2503 2524 C2' A A 117 OK 2526 2522 2525 2546 C2' C A 118 OK 2548 2544 2547 2572 C2' SAM A 201 OK 2574 2570 2573 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 5 C3' G A 0 OK 3 6 7 28 C3' U A 1 OK 26 29 30 48 C3' U A 2 OK 46 49 50 68 C3' C A 3 OK 66 69 70 88 C3' U A 4 OK 86 89 90 108 C3' U A 5 OK 106 109 110 128 C3' A A 6 OK 126 129 130 150 C3' U A 7 OK 148 151 152 170 C3' C A 8 OK 168 171 172 190 C3' A A 9 OK 188 191 192 212 C3' A A 10 OK 210 213 214 234 C3' G A 11 OK 232 235 236 257 C3' A A 12 OK 255 258 259 279 C3' G A 13 OK 277 280 281 302 C3' A A 14 OK 300 303 304 324 C3' A A 15 OK 322 325 326 346 C3' G A 16 OK 344 347 348 369 C3' C A 17 OK 367 370 371 389 C3' A A 18 OK 387 390 391 411 C3' G A 19 OK 409 412 413 434 C3' A A 20 OK 432 435 436 456 C3' G A 21 OK 454 457 458 479 C3' G A 22 OK 477 480 481 502 C3' G A 23 OK 500 503 504 525 C3' A A 24 OK 523 526 527 547 C3' C A 25 OK 545 548 549 567 C3' U A 26 OK 565 568 569 587 C3' G A 27 OK 585 588 589 610 C3' G A 28 OK 608 611 612 633 C3' C A 29 OK 631 634 635 653 C3' C A 30 OK 651 654 655 673 C3' C A 31 OK 671 674 675 693 C3' G A 32 OK 691 694 695 716 C3' A A 33 OK 714 717 718 738 C3' C A 34 OK 736 739 740 758 C3' G A 35 OK 756 759 760 781 C3' A A 36 OK 779 782 783 803 C3' A A 37 OK 801 804 805 825 C3' G A 38 OK 823 826 827 848 C3' C A 39 OK 846 849 850 868 C3' U A 40 OK 866 869 870 888 C3' U A 41 OK 886 889 890 908 C3' C A 42 OK 906 909 910 928 C3' A A 43 OK 926 929 930 950 C3' G A 44 OK 948 951 952 973 C3' C A 45 OK 971 974 975 993 C3' A A 46 OK 991 994 995 1015 C3' A A 47 OK 1013 1016 1017 1037 C3' C A 48 OK 1035 1038 1039 1057 C3' C A 49 OK 1055 1058 1059 1077 C3' G A 50 OK 1075 1078 1079 1100 C3' G A 51 OK 1098 1101 1102 1123 C3' U A 52 OK 1121 1124 1125 1143 C3' G A 53 OK 1141 1144 1145 1166 C3' U A 54 OK 1164 1167 1168 1186 C3' A A 55 OK 1184 1187 1188 1208 C3' A A 56 OK 1206 1209 1210 1230 C3' U A 57 OK 1228 1231 1232 1250 C3' G A 58 OK 1248 1251 1252 1273 C3' G A 59 OK 1271 1274 1275 1296 C3' C A 60 OK 1294 1297 1298 1316 C3' G A 61 OK 1314 1317 1318 1339 C3' A A 62 OK 1337 1340 1341 1361 C3' A A 63 OK 1359 1362 1363 1383 C3' A A 64 OK 1381 1384 1385 1405 C3' G A 65 OK 1403 1406 1407 1428 C3' C A 66 OK 1426 1429 1430 1448 C3' C A 67 OK 1446 1449 1450 1468 C3' A A 68 OK 1466 1469 1470 1490 C3' U A 69 OK 1488 1491 1492 1510 C3' G A 70 OK 1508 1511 1512 1533 C3' A A 71 OK 1531 1534 1535 1555 C3' C A 72 OK 1553 1556 1557 1575 C3' C A 73 OK 1573 1576 1577 1595 C3' A A 74 OK 1593 1596 1597 1617 C3' A A 75 OK 1615 1618 1619 1639 C3' G A 76 OK 1637 1640 1641 1662 C3' G A 77 OK 1660 1663 1664 1685 C3' U A 78 OK 1683 1686 1687 1705 C3' G A 79 OK 1703 1706 1707 1728 C3' C A 80 OK 1726 1729 1730 1748 C3' U A 81 OK 1746 1749 1750 1768 C3' A A 82 OK 1766 1769 1770 1790 C3' A A 83 OK 1788 1791 1792 1812 C3' A A 84 OK 1810 1813 1814 1834 C3' U A 85 OK 1832 1835 1836 1854 C3' C A 86 OK 1852 1855 1856 1874 C3' C A 87 OK 1872 1875 1876 1894 C3' A A 88 OK 1892 1895 1896 1916 C3' G A 89 OK 1914 1917 1918 1939 C3' C A 90 OK 1937 1940 1941 1959 C3' A A 91 OK 1957 1960 1961 1981 C3' A A 92 OK 1979 1982 1983 2003 C3' G A 93 OK 2001 2004 2005 2026 C3' C A 94 OK 2024 2027 2028 2046 C3' U A 95 OK 2044 2047 2048 2066 C3' C A 96 OK 2064 2067 2068 2086 C3' G A 97 OK 2084 2087 2088 2109 C3' A A 98 OK 2107 2110 2111 2131 C3' A A 99 OK 2129 2132 2133 2153 C3' C A 100 OK 2151 2154 2155 2173 C3' A A 101 OK 2171 2174 2175 2195 C3' G A 102 OK 2193 2196 2197 2218 C3' C A 103 OK 2216 2219 2220 2238 C3' U A 104 OK 2236 2239 2240 2258 C3' U A 105 OK 2256 2259 2260 2278 C3' G A 106 OK 2276 2279 2280 2301 C3' G A 107 OK 2299 2302 2303 2324 C3' A A 108 OK 2322 2325 2326 2346 C3' A A 109 OK 2344 2347 2348 2368 C3' G A 110 OK 2366 2369 2370 2391 C3' A A 111 OK 2389 2392 2393 2413 C3' U A 112 OK 2411 2414 2415 2433 C3' A A 113 OK 2431 2434 2435 2455 C3' A A 114 OK 2453 2456 2457 2477 C3' G A 115 OK 2475 2478 2479 2500 C3' A A 116 OK 2498 2501 2502 2522 C3' A A 117 OK 2520 2523 2524 2544 C3' C A 118 OK 2542 2545 2546 2570 C3' SAM A 201 OK 2568 2571 2572 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 3 C4' G A 0 OK 5 2 4 26 C4' U A 1 OK 28 25 27 46 C4' U A 2 OK 48 45 47 66 C4' C A 3 OK 68 65 67 86 C4' U A 4 OK 88 85 87 106 C4' U A 5 OK 108 105 107 126 C4' A A 6 OK 128 125 127 148 C4' U A 7 OK 150 147 149 168 C4' C A 8 OK 170 167 169 188 C4' A A 9 OK 190 187 189 210 C4' A A 10 OK 212 209 211 232 C4' G A 11 OK 234 231 233 255 C4' A A 12 OK 257 254 256 277 C4' G A 13 OK 279 276 278 300 C4' A A 14 OK 302 299 301 322 C4' A A 15 OK 324 321 323 344 C4' G A 16 OK 346 343 345 367 C4' C A 17 OK 369 366 368 387 C4' A A 18 OK 389 386 388 409 C4' G A 19 OK 411 408 410 432 C4' A A 20 OK 434 431 433 454 C4' G A 21 OK 456 453 455 477 C4' G A 22 OK 479 476 478 500 C4' G A 23 OK 502 499 501 523 C4' A A 24 OK 525 522 524 545 C4' C A 25 OK 547 544 546 565 C4' U A 26 OK 567 564 566 585 C4' G A 27 OK 587 584 586 608 C4' G A 28 OK 610 607 609 631 C4' C A 29 OK 633 630 632 651 C4' C A 30 OK 653 650 652 671 C4' C A 31 OK 673 670 672 691 C4' G A 32 OK 693 690 692 714 C4' A A 33 OK 716 713 715 736 C4' C A 34 OK 738 735 737 756 C4' G A 35 OK 758 755 757 779 C4' A A 36 OK 781 778 780 801 C4' A A 37 OK 803 800 802 823 C4' G A 38 OK 825 822 824 846 C4' C A 39 OK 848 845 847 866 C4' U A 40 OK 868 865 867 886 C4' U A 41 OK 888 885 887 906 C4' C A 42 OK 908 905 907 926 C4' A A 43 OK 928 925 927 948 C4' G A 44 OK 950 947 949 971 C4' C A 45 OK 973 970 972 991 C4' A A 46 OK 993 990 992 1013 C4' A A 47 OK 1015 1012 1014 1035 C4' C A 48 OK 1037 1034 1036 1055 C4' C A 49 OK 1057 1054 1056 1075 C4' G A 50 OK 1077 1074 1076 1098 C4' G A 51 OK 1100 1097 1099 1121 C4' U A 52 OK 1123 1120 1122 1141 C4' G A 53 OK 1143 1140 1142 1164 C4' U A 54 OK 1166 1163 1165 1184 C4' A A 55 OK 1186 1183 1185 1206 C4' A A 56 OK 1208 1205 1207 1228 C4' U A 57 OK 1230 1227 1229 1248 C4' G A 58 OK 1250 1247 1249 1271 C4' G A 59 OK 1273 1270 1272 1294 C4' C A 60 OK 1296 1293 1295 1314 C4' G A 61 OK 1316 1313 1315 1337 C4' A A 62 OK 1339 1336 1338 1359 C4' A A 63 OK 1361 1358 1360 1381 C4' A A 64 OK 1383 1380 1382 1403 C4' G A 65 OK 1405 1402 1404 1426 C4' C A 66 OK 1428 1425 1427 1446 C4' C A 67 OK 1448 1445 1447 1466 C4' A A 68 OK 1468 1465 1467 1488 C4' U A 69 OK 1490 1487 1489 1508 C4' G A 70 OK 1510 1507 1509 1531 C4' A A 71 OK 1533 1530 1532 1553 C4' C A 72 OK 1555 1552 1554 1573 C4' C A 73 OK 1575 1572 1574 1593 C4' A A 74 OK 1595 1592 1594 1615 C4' A A 75 OK 1617 1614 1616 1637 C4' G A 76 OK 1639 1636 1638 1660 C4' G A 77 OK 1662 1659 1661 1683 C4' U A 78 OK 1685 1682 1684 1703 C4' G A 79 OK 1705 1702 1704 1726 C4' C A 80 OK 1728 1725 1727 1746 C4' U A 81 OK 1748 1745 1747 1766 C4' A A 82 OK 1768 1765 1767 1788 C4' A A 83 OK 1790 1787 1789 1810 C4' A A 84 OK 1812 1809 1811 1832 C4' U A 85 OK 1834 1831 1833 1852 C4' C A 86 OK 1854 1851 1853 1872 C4' C A 87 OK 1874 1871 1873 1892 C4' A A 88 OK 1894 1891 1893 1914 C4' G A 89 OK 1916 1913 1915 1937 C4' C A 90 OK 1939 1936 1938 1957 C4' A A 91 OK 1959 1956 1958 1979 C4' A A 92 OK 1981 1978 1980 2001 C4' G A 93 OK 2003 2000 2002 2024 C4' C A 94 OK 2026 2023 2025 2044 C4' U A 95 OK 2046 2043 2045 2064 C4' C A 96 OK 2066 2063 2065 2084 C4' G A 97 OK 2086 2083 2085 2107 C4' A A 98 OK 2109 2106 2108 2129 C4' A A 99 OK 2131 2128 2130 2151 C4' C A 100 OK 2153 2150 2152 2171 C4' A A 101 OK 2173 2170 2172 2193 C4' G A 102 OK 2195 2192 2194 2216 C4' C A 103 OK 2218 2215 2217 2236 C4' U A 104 OK 2238 2235 2237 2256 C4' U A 105 OK 2258 2255 2257 2276 C4' G A 106 OK 2278 2275 2277 2299 C4' G A 107 OK 2301 2298 2300 2322 C4' A A 108 OK 2324 2321 2323 2344 C4' A A 109 OK 2346 2343 2345 2366 C4' G A 110 OK 2368 2365 2367 2389 C4' A A 111 OK 2391 2388 2390 2411 C4' U A 112 OK 2413 2410 2412 2431 C4' A A 113 OK 2433 2430 2432 2453 C4' A A 114 OK 2455 2452 2454 2475 C4' G A 115 OK 2477 2474 2476 2498 C4' A A 116 OK 2500 2497 2499 2520 C4' A A 117 OK 2522 2519 2521 2542 C4' C A 118 OK 2544 2541 2543 2568 C4' SAM A 201 OK 2570 2567 2569 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 2 C5' G A 0 1 3 25 C5' U A 1 24 26 45 C5' U A 2 44 46 65 C5' C A 3 64 66 85 C5' U A 4 84 86 105 C5' U A 5 104 106 125 C5' A A 6 124 126 147 C5' U A 7 146 148 167 C5' C A 8 166 168 187 C5' A A 9 186 188 209 C5' A A 10 208 210 231 C5' G A 11 230 232 254 C5' A A 12 253 255 276 C5' G A 13 275 277 299 C5' A A 14 298 300 321 C5' A A 15 320 322 343 C5' G A 16 342 344 366 C5' C A 17 365 367 386 C5' A A 18 385 387 408 C5' G A 19 407 409 431 C5' A A 20 430 432 453 C5' G A 21 452 454 476 C5' G A 22 475 477 499 C5' G A 23 498 500 522 C5' A A 24 521 523 544 C5' C A 25 543 545 564 C5' U A 26 563 565 584 C5' G A 27 583 585 607 C5' G A 28 606 608 630 C5' C A 29 629 631 650 C5' C A 30 649 651 670 C5' C A 31 669 671 690 C5' G A 32 689 691 713 C5' A A 33 712 714 735 C5' C A 34 734 736 755 C5' G A 35 754 756 778 C5' A A 36 777 779 800 C5' A A 37 799 801 822 C5' G A 38 821 823 845 C5' C A 39 844 846 865 C5' U A 40 864 866 885 C5' U A 41 884 886 905 C5' C A 42 904 906 925 C5' A A 43 924 926 947 C5' G A 44 946 948 970 C5' C A 45 969 971 990 C5' A A 46 989 991 1012 C5' A A 47 1011 1013 1034 C5' C A 48 1033 1035 1054 C5' C A 49 1053 1055 1074 C5' G A 50 1073 1075 1097 C5' G A 51 1096 1098 1120 C5' U A 52 1119 1121 1140 C5' G A 53 1139 1141 1163 C5' U A 54 1162 1164 1183 C5' A A 55 1182 1184 1205 C5' A A 56 1204 1206 1227 C5' U A 57 1226 1228 1247 C5' G A 58 1246 1248 1270 C5' G A 59 1269 1271 1293 C5' C A 60 1292 1294 1313 C5' G A 61 1312 1314 1336 C5' A A 62 1335 1337 1358 C5' A A 63 1357 1359 1380 C5' A A 64 1379 1381 1402 C5' G A 65 1401 1403 1425 C5' C A 66 1424 1426 1445 C5' C A 67 1444 1446 1465 C5' A A 68 1464 1466 1487 C5' U A 69 1486 1488 1507 C5' G A 70 1506 1508 1530 C5' A A 71 1529 1531 1552 C5' C A 72 1551 1553 1572 C5' C A 73 1571 1573 1592 C5' A A 74 1591 1593 1614 C5' A A 75 1613 1615 1636 C5' G A 76 1635 1637 1659 C5' G A 77 1658 1660 1682 C5' U A 78 1681 1683 1702 C5' G A 79 1701 1703 1725 C5' C A 80 1724 1726 1745 C5' U A 81 1744 1746 1765 C5' A A 82 1764 1766 1787 C5' A A 83 1786 1788 1809 C5' A A 84 1808 1810 1831 C5' U A 85 1830 1832 1851 C5' C A 86 1850 1852 1871 C5' C A 87 1870 1872 1891 C5' A A 88 1890 1892 1913 C5' G A 89 1912 1914 1936 C5' C A 90 1935 1937 1956 C5' A A 91 1955 1957 1978 C5' A A 92 1977 1979 2000 C5' G A 93 1999 2001 2023 C5' C A 94 2022 2024 2043 C5' U A 95 2042 2044 2063 C5' C A 96 2062 2064 2083 C5' G A 97 2082 2084 2106 C5' A A 98 2105 2107 2128 C5' A A 99 2127 2129 2150 C5' C A 100 2149 2151 2170 C5' A A 101 2169 2171 2192 C5' G A 102 2191 2193 2215 C5' C A 103 2214 2216 2235 C5' U A 104 2234 2236 2255 C5' U A 105 2254 2256 2275 C5' G A 106 2274 2276 2298 C5' G A 107 2297 2299 2321 C5' A A 108 2320 2322 2343 C5' A A 109 2342 2344 2365 C5' G A 110 2364 2366 2388 C5' A A 111 2387 2389 2410 C5' U A 112 2409 2411 2430 C5' A A 113 2429 2431 2452 C5' A A 114 2451 2453 2474 C5' G A 115 2473 2475 2497 C5' A A 116 2496 2498 2519 C5' A A 117 2518 2520 2541 C5' C A 118 2540 2542 2567 C5' SAM A 201 2568 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 21 P U A 1 distorted distorted 6 22 23 24 41 P U A 2 distorted distorted 29 42 43 44 61 P C A 3 distorted distorted 49 62 63 64 81 P U A 4 distorted distorted 69 82 83 84 101 P U A 5 distorted distorted 89 102 103 104 121 P A A 6 distorted distorted 109 122 123 124 143 P U A 7 distorted distorted 129 144 145 146 163 P C A 8 distorted distorted 151 164 165 166 183 P A A 9 distorted distorted 171 184 185 186 205 P A A 10 distorted distorted 191 206 207 208 227 P G A 11 distorted distorted 213 228 229 230 250 P A A 12 distorted distorted 235 251 252 253 272 P G A 13 distorted distorted 258 273 274 275 295 P A A 14 distorted distorted 280 296 297 298 317 P A A 15 distorted distorted 303 318 319 320 339 P G A 16 distorted distorted 325 340 341 342 362 P C A 17 distorted distorted 347 363 364 365 382 P A A 18 distorted distorted 370 383 384 385 404 P G A 19 distorted distorted 390 405 406 407 427 P A A 20 distorted distorted 412 428 429 430 449 P G A 21 distorted distorted 435 450 451 452 472 P G A 22 distorted distorted 457 473 474 475 495 P G A 23 distorted distorted 480 496 497 498 518 P A A 24 distorted distorted 503 519 520 521 540 P C A 25 distorted distorted 526 541 542 543 560 P U A 26 distorted distorted 548 561 562 563 580 P G A 27 distorted distorted 568 581 582 583 603 P G A 28 distorted distorted 588 604 605 606 626 P C A 29 distorted distorted 611 627 628 629 646 P C A 30 distorted distorted 634 647 648 649 666 P C A 31 distorted distorted 654 667 668 669 686 P G A 32 distorted distorted 674 687 688 689 709 P A A 33 distorted distorted 694 710 711 712 731 P C A 34 distorted distorted 717 732 733 734 751 P G A 35 distorted distorted 739 752 753 754 774 P A A 36 distorted distorted 759 775 776 777 796 P A A 37 distorted distorted 782 797 798 799 818 P G A 38 distorted distorted 804 819 820 821 841 P C A 39 distorted distorted 826 842 843 844 861 P U A 40 distorted distorted 849 862 863 864 881 P U A 41 distorted distorted 869 882 883 884 901 P C A 42 distorted distorted 889 902 903 904 921 P A A 43 distorted distorted 909 922 923 924 943 P G A 44 distorted distorted 929 944 945 946 966 P C A 45 distorted distorted 951 967 968 969 986 P A A 46 distorted distorted 974 987 988 989 1008 P A A 47 distorted distorted 994 1009 1010 1011 1030 P C A 48 distorted distorted 1016 1031 1032 1033 1050 P C A 49 distorted distorted 1038 1051 1052 1053 1070 P G A 50 distorted distorted 1058 1071 1072 1073 1093 P G A 51 distorted distorted 1078 1094 1095 1096 1116 P U A 52 distorted distorted 1101 1117 1118 1119 1136 P G A 53 distorted distorted 1124 1137 1138 1139 1159 P U A 54 distorted distorted 1144 1160 1161 1162 1179 P A A 55 distorted distorted 1167 1180 1181 1182 1201 P A A 56 distorted distorted 1187 1202 1203 1204 1223 P U A 57 distorted distorted 1209 1224 1225 1226 1243 P G A 58 distorted distorted 1231 1244 1245 1246 1266 P G A 59 distorted distorted 1251 1267 1268 1269 1289 P C A 60 distorted distorted 1274 1290 1291 1292 1309 P G A 61 distorted distorted 1297 1310 1311 1312 1332 P A A 62 distorted distorted 1317 1333 1334 1335 1354 P A A 63 distorted distorted 1340 1355 1356 1357 1376 P A A 64 distorted distorted 1362 1377 1378 1379 1398 P G A 65 distorted distorted 1384 1399 1400 1401 1421 P C A 66 distorted distorted 1406 1422 1423 1424 1441 P C A 67 distorted distorted 1429 1442 1443 1444 1461 P A A 68 distorted distorted 1449 1462 1463 1464 1483 P U A 69 distorted distorted 1469 1484 1485 1486 1503 P G A 70 distorted distorted 1491 1504 1505 1506 1526 P A A 71 distorted distorted 1511 1527 1528 1529 1548 P C A 72 distorted distorted 1534 1549 1550 1551 1568 P C A 73 distorted distorted 1556 1569 1570 1571 1588 P A A 74 distorted distorted 1576 1589 1590 1591 1610 P A A 75 distorted distorted 1596 1611 1612 1613 1632 P G A 76 distorted distorted 1618 1633 1634 1635 1655 P G A 77 distorted distorted 1640 1656 1657 1658 1678 P U A 78 distorted distorted 1663 1679 1680 1681 1698 P G A 79 distorted distorted 1686 1699 1700 1701 1721 P C A 80 distorted distorted 1706 1722 1723 1724 1741 P U A 81 distorted distorted 1729 1742 1743 1744 1761 P A A 82 distorted distorted 1749 1762 1763 1764 1783 P A A 83 distorted distorted 1769 1784 1785 1786 1805 P A A 84 distorted distorted 1791 1806 1807 1808 1827 P U A 85 distorted distorted 1813 1828 1829 1830 1847 P C A 86 distorted distorted 1835 1848 1849 1850 1867 P C A 87 distorted distorted 1855 1868 1869 1870 1887 P A A 88 distorted distorted 1875 1888 1889 1890 1909 P G A 89 distorted distorted 1895 1910 1911 1912 1932 P C A 90 distorted distorted 1917 1933 1934 1935 1952 P A A 91 distorted distorted 1940 1953 1954 1955 1974 P A A 92 distorted distorted 1960 1975 1976 1977 1996 P G A 93 distorted distorted 1982 1997 1998 1999 2019 P C A 94 distorted distorted 2004 2020 2021 2022 2039 P U A 95 distorted distorted 2027 2040 2041 2042 2059 P C A 96 distorted distorted 2047 2060 2061 2062 2079 P G A 97 distorted distorted 2067 2080 2081 2082 2102 P A A 98 distorted distorted 2087 2103 2104 2105 2124 P A A 99 distorted distorted 2110 2125 2126 2127 2146 P C A 100 distorted distorted 2132 2147 2148 2149 2166 P A A 101 distorted distorted 2154 2167 2168 2169 2188 P G A 102 distorted distorted 2174 2189 2190 2191 2211 P C A 103 distorted distorted 2196 2212 2213 2214 2231 P U A 104 distorted distorted 2219 2232 2233 2234 2251 P U A 105 distorted distorted 2239 2252 2253 2254 2271 P G A 106 distorted distorted 2259 2272 2273 2274 2294 P G A 107 distorted distorted 2279 2295 2296 2297 2317 P A A 108 distorted distorted 2302 2318 2319 2320 2339 P A A 109 distorted distorted 2325 2340 2341 2342 2361 P G A 110 distorted distorted 2347 2362 2363 2364 2384 P A A 111 distorted distorted 2369 2385 2386 2387 2406 P U A 112 distorted distorted 2392 2407 2408 2409 2426 P A A 113 distorted distorted 2414 2427 2428 2429 2448 P A A 114 distorted distorted 2434 2449 2450 2451 2470 P G A 115 distorted distorted 2456 2471 2472 2473 2493 P A A 116 distorted distorted 2478 2494 2495 2496 2515 P A A 117 distorted distorted 2501 2516 2517 2518 2537 P C A 118 distorted distorted 2523 2538 2539 2540 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