ID code: '4FRN' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 12 C1' G A 1 beta 7 13 10 35 C1' G A 2 beta 30 36 33 58 C1' G A 3 beta 53 59 56 81 C1' C A 4 beta 76 82 79 101 C1' U A 5 beta 96 102 99 121 C1' A A 6 beta 116 122 119 143 C1' A A 7 beta 138 144 141 165 C1' A A 8 beta 160 166 163 187 C1' A A 9 beta 182 188 185 209 C1' G A 10 beta 204 210 207 232 C1' C A 11 beta 227 233 230 252 C1' A A 12 beta 247 253 250 274 C1' U A 13 beta 269 275 272 294 C1' G A 14 beta 289 295 292 317 C1' G A 15 beta 312 318 315 340 C1' U A 16 beta 335 341 338 360 C1' G A 17 beta 355 361 358 383 C1' G A 18 beta 378 384 381 406 C1' G A 19 beta 401 407 404 429 C1' A A 20 beta 424 430 427 451 C1' A A 21 beta 446 452 449 473 C1' A A 22 beta 468 474 471 495 C1' G A 23 beta 490 496 493 518 C1' U A 24 beta 513 519 516 538 C1' G A 25 beta 533 539 536 561 C1' A A 26 beta 556 562 559 583 C1' C A 27 beta 578 584 581 603 C1' G A 28 beta 598 604 601 626 C1' U A 29 beta 621 627 624 646 C1' G A 30 beta 641 647 644 669 C1' U A 31 beta 664 670 667 689 C1' A A 32 beta 684 690 687 711 C1' A A 33 beta 706 712 709 733 C1' U A 34 beta 728 734 731 753 C1' U A 35 beta 748 754 751 773 C1' C A 36 beta 768 774 771 793 C1' G A 37 beta 788 794 791 816 C1' U A 38 beta 811 817 814 836 C1' C A 39 beta 831 837 834 856 C1' C A 40 beta 851 857 854 876 C1' A A 41 beta 871 877 874 898 C1' C A 42 beta 893 899 896 918 C1' A A 43 beta 913 919 916 940 C1' U A 44 beta 935 941 938 960 C1' U A 45 beta 955 961 958 980 C1' A A 46 beta 975 981 978 1002 C1' C A 47 beta 997 1003 1000 1022 C1' U A 48 beta 1017 1023 1020 1042 C1' U A 49 beta 1037 1043 1040 1062 C1' G A 50 beta 1057 1063 1060 1085 C1' A A 51 beta 1080 1086 1083 1107 C1' U A 52 beta 1102 1108 1105 1127 C1' A A 53 beta 1122 1128 1125 1149 C1' C A 54 beta 1144 1150 1147 1169 C1' G A 55 beta 1164 1170 1167 1192 C1' G A 56 beta 1187 1193 1190 1215 C1' U A 57 beta 1210 1216 1213 1235 C1' U A 58 beta 1230 1236 1233 1255 C1' A A 59 beta 1250 1256 1253 1277 C1' U A 60 beta 1272 1278 1275 1297 C1' A A 61 beta 1292 1298 1295 1319 C1' C A 62 beta 1314 1320 1317 1339 C1' U A 63 beta 1334 1340 1337 1359 C1' C A 64 beta 1354 1360 1357 1379 C1' C A 65 beta 1374 1380 1377 1399 C1' G A 66 beta 1394 1400 1397 1422 C1' A A 67 beta 1417 1423 1420 1444 C1' A A 68 beta 1439 1445 1442 1466 C1' U A 69 beta 1461 1467 1464 1486 C1' G A 70 beta 1481 1487 1484 1509 C1' C A 71 beta 1504 1510 1507 1529 C1' C A 72 beta 1524 1530 1527 1549 C1' A A 73 beta 1544 1550 1547 1571 C1' C A 74 beta 1566 1572 1569 1591 C1' C A 75 beta 1586 1592 1589 1611 C1' U A 76 beta 1606 1612 1609 1631 C1' A A 77 beta 1626 1632 1629 1653 C1' G A 78 beta 1648 1654 1651 1676 C1' C A 79 beta 1671 1677 1674 1696 C1' C A 80 beta 1691 1697 1694 1716 C1' C A 81 beta 1711 1717 1714 1736 C1' A A 82 beta 1731 1737 1734 1758 C1' A A 83 beta 1753 1759 1756 1780 C1' A A 84 beta 1775 1781 1778 1802 C1' G A 85 beta 1797 1803 1800 1825 C1' U A 86 beta 1820 1826 1823 1845 C1' A A 87 beta 1840 1846 1843 1867 C1' G A 88 beta 1862 1868 1865 1890 C1' A A 89 beta 1885 1891 1888 1912 C1' G A 90 beta 1907 1913 1910 1935 C1' C A 91 beta 1930 1936 1933 1955 C1' A A 92 beta 1950 1956 1953 1977 C1' A A 93 beta 1972 1978 1975 1999 C1' G A 94 beta 1994 2000 1997 2022 C1' G A 95 beta 2017 2023 2020 2045 C1' A A 96 beta 2040 2046 2043 2067 C1' G A 97 beta 2062 2068 2065 2090 C1' A A 98 beta 2085 2091 2088 2112 C1' C A 99 beta 2107 2113 2110 2132 C1' U A 100 beta 2127 2133 2130 2152 C1' C A 101 beta 2147 2153 2150 2172 C1' A A 102 beta 2167 2173 2170 2195 C1' G B 1 beta 2190 2196 2193 2218 C1' G B 2 beta 2213 2219 2216 2241 C1' G B 3 beta 2236 2242 2239 2264 C1' C B 4 beta 2259 2265 2262 2284 C1' U B 5 beta 2279 2285 2282 2304 C1' A B 6 beta 2299 2305 2302 2326 C1' A B 7 beta 2321 2327 2324 2348 C1' A B 8 beta 2343 2349 2346 2370 C1' A B 9 beta 2365 2371 2368 2392 C1' G B 10 beta 2387 2393 2390 2415 C1' C B 11 beta 2410 2416 2413 2435 C1' A B 12 beta 2430 2436 2433 2457 C1' U B 13 beta 2452 2458 2455 2477 C1' G B 14 beta 2472 2478 2475 2500 C1' G B 15 beta 2495 2501 2498 2523 C1' U B 16 beta 2518 2524 2521 2543 C1' G B 17 beta 2538 2544 2541 2566 C1' G B 18 beta 2561 2567 2564 2589 C1' G B 19 beta 2584 2590 2587 2612 C1' A B 20 beta 2607 2613 2610 2634 C1' A B 21 beta 2629 2635 2632 2656 C1' A B 22 beta 2651 2657 2654 2678 C1' G B 23 beta 2673 2679 2676 2701 C1' U B 24 beta 2696 2702 2699 2721 C1' G B 25 beta 2716 2722 2719 2744 C1' A B 26 beta 2739 2745 2742 2766 C1' C B 27 beta 2761 2767 2764 2786 C1' G B 28 beta 2781 2787 2784 2809 C1' U B 29 beta 2804 2810 2807 2829 C1' G B 30 beta 2824 2830 2827 2852 C1' U B 31 beta 2847 2853 2850 2872 C1' A B 32 beta 2867 2873 2870 2894 C1' A B 33 beta 2889 2895 2892 2916 C1' U B 34 beta 2911 2917 2914 2936 C1' U B 35 beta 2931 2937 2934 2956 C1' C B 36 beta 2951 2957 2954 2976 C1' G B 37 beta 2971 2977 2974 2999 C1' U B 38 beta 2994 3000 2997 3019 C1' C B 39 beta 3014 3020 3017 3039 C1' C B 40 beta 3034 3040 3037 3059 C1' A B 41 beta 3054 3060 3057 3081 C1' C B 42 beta 3076 3082 3079 3101 C1' A B 43 beta 3096 3102 3099 3123 C1' U B 44 beta 3118 3124 3121 3143 C1' U B 45 beta 3138 3144 3141 3163 C1' A B 46 beta 3158 3164 3161 3185 C1' C B 47 beta 3180 3186 3183 3205 C1' U B 48 beta 3200 3206 3203 3225 C1' U B 49 beta 3220 3226 3223 3245 C1' G B 50 beta 3240 3246 3243 3268 C1' A B 51 beta 3263 3269 3266 3290 C1' U B 52 beta 3285 3291 3288 3310 C1' A B 53 beta 3305 3311 3308 3332 C1' C B 54 beta 3327 3333 3330 3352 C1' G B 55 beta 3347 3353 3350 3375 C1' G B 56 beta 3370 3376 3373 3398 C1' U B 57 beta 3393 3399 3396 3418 C1' U B 58 beta 3413 3419 3416 3438 C1' A B 59 beta 3433 3439 3436 3460 C1' U B 60 beta 3455 3461 3458 3480 C1' A B 61 beta 3475 3481 3478 3502 C1' C B 62 beta 3497 3503 3500 3522 C1' U B 63 beta 3517 3523 3520 3542 C1' C B 64 beta 3537 3543 3540 3562 C1' C B 65 beta 3557 3563 3560 3582 C1' G B 66 beta 3577 3583 3580 3605 C1' A B 67 beta 3600 3606 3603 3627 C1' A B 68 beta 3622 3628 3625 3649 C1' U B 69 beta 3644 3650 3647 3669 C1' G B 70 beta 3664 3670 3667 3692 C1' C B 71 beta 3687 3693 3690 3712 C1' C B 72 beta 3707 3713 3710 3732 C1' A B 73 beta 3727 3733 3730 3754 C1' C B 74 beta 3749 3755 3752 3774 C1' C B 75 beta 3769 3775 3772 3794 C1' U B 76 beta 3789 3795 3792 3814 C1' A B 77 beta 3809 3815 3812 3836 C1' G B 78 beta 3831 3837 3834 3859 C1' C B 79 beta 3854 3860 3857 3879 C1' C B 80 beta 3874 3880 3877 3899 C1' C B 81 beta 3894 3900 3897 3919 C1' A B 82 beta 3914 3920 3917 3941 C1' A B 83 beta 3936 3942 3939 3963 C1' A B 84 beta 3958 3964 3961 3985 C1' G B 85 beta 3980 3986 3983 4008 C1' U B 86 beta 4003 4009 4006 4028 C1' A B 87 beta 4023 4029 4026 4050 C1' G B 88 beta 4045 4051 4048 4073 C1' A B 89 beta 4068 4074 4071 4095 C1' G B 90 beta 4090 4096 4093 4118 C1' C B 91 beta 4113 4119 4116 4138 C1' A B 92 beta 4133 4139 4136 4160 C1' A B 93 beta 4155 4161 4158 4182 C1' G B 94 beta 4177 4183 4180 4205 C1' G B 95 beta 4200 4206 4203 4228 C1' A B 96 beta 4223 4229 4226 4250 C1' G B 97 beta 4245 4251 4248 4273 C1' A B 98 beta 4268 4274 4271 4295 C1' C B 99 beta 4290 4296 4293 4315 C1' U B 100 beta 4310 4316 4313 4335 C1' C B 101 beta 4330 4336 4333 4355 C1' A B 102 beta 4350 4356 4353 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 10 C2' G A 1 OK 12 8 11 33 C2' G A 2 OK 35 31 34 56 C2' G A 3 OK 58 54 57 79 C2' C A 4 OK 81 77 80 99 C2' U A 5 OK 101 97 100 119 C2' A A 6 OK 121 117 120 141 C2' A A 7 OK 143 139 142 163 C2' A A 8 OK 165 161 164 185 C2' A A 9 OK 187 183 186 207 C2' G A 10 OK 209 205 208 230 C2' C A 11 OK 232 228 231 250 C2' A A 12 OK 252 248 251 272 C2' U A 13 OK 274 270 273 292 C2' G A 14 OK 294 290 293 315 C2' G A 15 OK 317 313 316 338 C2' U A 16 OK 340 336 339 358 C2' G A 17 OK 360 356 359 381 C2' G A 18 OK 383 379 382 404 C2' G A 19 OK 406 402 405 427 C2' A A 20 OK 429 425 428 449 C2' A A 21 OK 451 447 450 471 C2' A A 22 OK 473 469 472 493 C2' G A 23 OK 495 491 494 516 C2' U A 24 OK 518 514 517 536 C2' G A 25 OK 538 534 537 559 C2' A A 26 OK 561 557 560 581 C2' C A 27 OK 583 579 582 601 C2' G A 28 OK 603 599 602 624 C2' U A 29 OK 626 622 625 644 C2' G A 30 OK 646 642 645 667 C2' U A 31 OK 669 665 668 687 C2' A A 32 OK 689 685 688 709 C2' A A 33 OK 711 707 710 731 C2' U A 34 OK 733 729 732 751 C2' U A 35 OK 753 749 752 771 C2' C A 36 OK 773 769 772 791 C2' G A 37 OK 793 789 792 814 C2' U A 38 OK 816 812 815 834 C2' C A 39 OK 836 832 835 854 C2' C A 40 OK 856 852 855 874 C2' A A 41 OK 876 872 875 896 C2' C A 42 OK 898 894 897 916 C2' A A 43 OK 918 914 917 938 C2' U A 44 OK 940 936 939 958 C2' U A 45 OK 960 956 959 978 C2' A A 46 OK 980 976 979 1000 C2' C A 47 OK 1002 998 1001 1020 C2' U A 48 OK 1022 1018 1021 1040 C2' U A 49 OK 1042 1038 1041 1060 C2' G A 50 OK 1062 1058 1061 1083 C2' A A 51 OK 1085 1081 1084 1105 C2' U A 52 OK 1107 1103 1106 1125 C2' A A 53 OK 1127 1123 1126 1147 C2' C A 54 OK 1149 1145 1148 1167 C2' G A 55 OK 1169 1165 1168 1190 C2' G A 56 OK 1192 1188 1191 1213 C2' U A 57 OK 1215 1211 1214 1233 C2' U A 58 OK 1235 1231 1234 1253 C2' A A 59 OK 1255 1251 1254 1275 C2' U A 60 OK 1277 1273 1276 1295 C2' A A 61 OK 1297 1293 1296 1317 C2' C A 62 OK 1319 1315 1318 1337 C2' U A 63 OK 1339 1335 1338 1357 C2' C A 64 OK 1359 1355 1358 1377 C2' C A 65 OK 1379 1375 1378 1397 C2' G A 66 OK 1399 1395 1398 1420 C2' A A 67 OK 1422 1418 1421 1442 C2' A A 68 OK 1444 1440 1443 1464 C2' U A 69 OK 1466 1462 1465 1484 C2' G A 70 OK 1486 1482 1485 1507 C2' C A 71 OK 1509 1505 1508 1527 C2' C A 72 OK 1529 1525 1528 1547 C2' A A 73 OK 1549 1545 1548 1569 C2' C A 74 OK 1571 1567 1570 1589 C2' C A 75 OK 1591 1587 1590 1609 C2' U A 76 OK 1611 1607 1610 1629 C2' A A 77 OK 1631 1627 1630 1651 C2' G A 78 OK 1653 1649 1652 1674 C2' C A 79 OK 1676 1672 1675 1694 C2' C A 80 OK 1696 1692 1695 1714 C2' C A 81 OK 1716 1712 1715 1734 C2' A A 82 OK 1736 1732 1735 1756 C2' A A 83 OK 1758 1754 1757 1778 C2' A A 84 OK 1780 1776 1779 1800 C2' G A 85 OK 1802 1798 1801 1823 C2' U A 86 OK 1825 1821 1824 1843 C2' A A 87 OK 1845 1841 1844 1865 C2' G A 88 OK 1867 1863 1866 1888 C2' A A 89 OK 1890 1886 1889 1910 C2' G A 90 OK 1912 1908 1911 1933 C2' C A 91 OK 1935 1931 1934 1953 C2' A A 92 OK 1955 1951 1954 1975 C2' A A 93 OK 1977 1973 1976 1997 C2' G A 94 OK 1999 1995 1998 2020 C2' G A 95 OK 2022 2018 2021 2043 C2' A A 96 OK 2045 2041 2044 2065 C2' G A 97 OK 2067 2063 2066 2088 C2' A A 98 OK 2090 2086 2089 2110 C2' C A 99 OK 2112 2108 2111 2130 C2' U A 100 OK 2132 2128 2131 2150 C2' C A 101 OK 2152 2148 2151 2170 C2' A A 102 OK 2172 2168 2171 2193 C2' G B 1 OK 2195 2191 2194 2216 C2' G B 2 OK 2218 2214 2217 2239 C2' G B 3 OK 2241 2237 2240 2262 C2' C B 4 OK 2264 2260 2263 2282 C2' U B 5 OK 2284 2280 2283 2302 C2' A B 6 OK 2304 2300 2303 2324 C2' A B 7 OK 2326 2322 2325 2346 C2' A B 8 OK 2348 2344 2347 2368 C2' A B 9 OK 2370 2366 2369 2390 C2' G B 10 OK 2392 2388 2391 2413 C2' C B 11 OK 2415 2411 2414 2433 C2' A B 12 OK 2435 2431 2434 2455 C2' U B 13 OK 2457 2453 2456 2475 C2' G B 14 OK 2477 2473 2476 2498 C2' G B 15 OK 2500 2496 2499 2521 C2' U B 16 OK 2523 2519 2522 2541 C2' G B 17 OK 2543 2539 2542 2564 C2' G B 18 OK 2566 2562 2565 2587 C2' G B 19 OK 2589 2585 2588 2610 C2' A B 20 OK 2612 2608 2611 2632 C2' A B 21 OK 2634 2630 2633 2654 C2' A B 22 OK 2656 2652 2655 2676 C2' G B 23 OK 2678 2674 2677 2699 C2' U B 24 OK 2701 2697 2700 2719 C2' G B 25 OK 2721 2717 2720 2742 C2' A B 26 OK 2744 2740 2743 2764 C2' C B 27 OK 2766 2762 2765 2784 C2' G B 28 OK 2786 2782 2785 2807 C2' U B 29 OK 2809 2805 2808 2827 C2' G B 30 OK 2829 2825 2828 2850 C2' U B 31 OK 2852 2848 2851 2870 C2' A B 32 OK 2872 2868 2871 2892 C2' A B 33 OK 2894 2890 2893 2914 C2' U B 34 OK 2916 2912 2915 2934 C2' U B 35 OK 2936 2932 2935 2954 C2' C B 36 OK 2956 2952 2955 2974 C2' G B 37 OK 2976 2972 2975 2997 C2' U B 38 OK 2999 2995 2998 3017 C2' C B 39 OK 3019 3015 3018 3037 C2' C B 40 OK 3039 3035 3038 3057 C2' A B 41 OK 3059 3055 3058 3079 C2' C B 42 OK 3081 3077 3080 3099 C2' A B 43 OK 3101 3097 3100 3121 C2' U B 44 OK 3123 3119 3122 3141 C2' U B 45 OK 3143 3139 3142 3161 C2' A B 46 OK 3163 3159 3162 3183 C2' C B 47 OK 3185 3181 3184 3203 C2' U B 48 OK 3205 3201 3204 3223 C2' U B 49 OK 3225 3221 3224 3243 C2' G B 50 OK 3245 3241 3244 3266 C2' A B 51 OK 3268 3264 3267 3288 C2' U B 52 OK 3290 3286 3289 3308 C2' A B 53 OK 3310 3306 3309 3330 C2' C B 54 OK 3332 3328 3331 3350 C2' G B 55 OK 3352 3348 3351 3373 C2' G B 56 OK 3375 3371 3374 3396 C2' U B 57 OK 3398 3394 3397 3416 C2' U B 58 OK 3418 3414 3417 3436 C2' A B 59 OK 3438 3434 3437 3458 C2' U B 60 OK 3460 3456 3459 3478 C2' A B 61 OK 3480 3476 3479 3500 C2' C B 62 OK 3502 3498 3501 3520 C2' U B 63 OK 3522 3518 3521 3540 C2' C B 64 OK 3542 3538 3541 3560 C2' C B 65 OK 3562 3558 3561 3580 C2' G B 66 OK 3582 3578 3581 3603 C2' A B 67 OK 3605 3601 3604 3625 C2' A B 68 OK 3627 3623 3626 3647 C2' U B 69 OK 3649 3645 3648 3667 C2' G B 70 OK 3669 3665 3668 3690 C2' C B 71 OK 3692 3688 3691 3710 C2' C B 72 OK 3712 3708 3711 3730 C2' A B 73 OK 3732 3728 3731 3752 C2' C B 74 OK 3754 3750 3753 3772 C2' C B 75 OK 3774 3770 3773 3792 C2' U B 76 OK 3794 3790 3793 3812 C2' A B 77 OK 3814 3810 3813 3834 C2' G B 78 OK 3836 3832 3835 3857 C2' C B 79 OK 3859 3855 3858 3877 C2' C B 80 OK 3879 3875 3878 3897 C2' C B 81 OK 3899 3895 3898 3917 C2' A B 82 OK 3919 3915 3918 3939 C2' A B 83 OK 3941 3937 3940 3961 C2' A B 84 OK 3963 3959 3962 3983 C2' G B 85 OK 3985 3981 3984 4006 C2' U B 86 OK 4008 4004 4007 4026 C2' A B 87 OK 4028 4024 4027 4048 C2' G B 88 OK 4050 4046 4049 4071 C2' A B 89 OK 4073 4069 4072 4093 C2' G B 90 OK 4095 4091 4094 4116 C2' C B 91 OK 4118 4114 4117 4136 C2' A B 92 OK 4138 4134 4137 4158 C2' A B 93 OK 4160 4156 4159 4180 C2' G B 94 OK 4182 4178 4181 4203 C2' G B 95 OK 4205 4201 4204 4226 C2' A B 96 OK 4228 4224 4227 4248 C2' G B 97 OK 4250 4246 4249 4271 C2' A B 98 OK 4273 4269 4272 4293 C2' C B 99 OK 4295 4291 4294 4313 C2' U B 100 OK 4315 4311 4314 4333 C2' C B 101 OK 4335 4331 4334 4353 C2' A B 102 OK 4355 4351 4354 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 8 C3' G A 1 OK 6 9 10 31 C3' G A 2 OK 29 32 33 54 C3' G A 3 OK 52 55 56 77 C3' C A 4 OK 75 78 79 97 C3' U A 5 OK 95 98 99 117 C3' A A 6 OK 115 118 119 139 C3' A A 7 OK 137 140 141 161 C3' A A 8 OK 159 162 163 183 C3' A A 9 OK 181 184 185 205 C3' G A 10 OK 203 206 207 228 C3' C A 11 OK 226 229 230 248 C3' A A 12 OK 246 249 250 270 C3' U A 13 OK 268 271 272 290 C3' G A 14 OK 288 291 292 313 C3' G A 15 OK 311 314 315 336 C3' U A 16 OK 334 337 338 356 C3' G A 17 OK 354 357 358 379 C3' G A 18 OK 377 380 381 402 C3' G A 19 OK 400 403 404 425 C3' A A 20 OK 423 426 427 447 C3' A A 21 OK 445 448 449 469 C3' A A 22 OK 467 470 471 491 C3' G A 23 OK 489 492 493 514 C3' U A 24 OK 512 515 516 534 C3' G A 25 OK 532 535 536 557 C3' A A 26 OK 555 558 559 579 C3' C A 27 OK 577 580 581 599 C3' G A 28 OK 597 600 601 622 C3' U A 29 OK 620 623 624 642 C3' G A 30 OK 640 643 644 665 C3' U A 31 OK 663 666 667 685 C3' A A 32 OK 683 686 687 707 C3' A A 33 OK 705 708 709 729 C3' U A 34 OK 727 730 731 749 C3' U A 35 OK 747 750 751 769 C3' C A 36 OK 767 770 771 789 C3' G A 37 OK 787 790 791 812 C3' U A 38 OK 810 813 814 832 C3' C A 39 OK 830 833 834 852 C3' C A 40 OK 850 853 854 872 C3' A A 41 OK 870 873 874 894 C3' C A 42 OK 892 895 896 914 C3' A A 43 OK 912 915 916 936 C3' U A 44 OK 934 937 938 956 C3' U A 45 OK 954 957 958 976 C3' A A 46 OK 974 977 978 998 C3' C A 47 OK 996 999 1000 1018 C3' U A 48 OK 1016 1019 1020 1038 C3' U A 49 OK 1036 1039 1040 1058 C3' G A 50 OK 1056 1059 1060 1081 C3' A A 51 OK 1079 1082 1083 1103 C3' U A 52 OK 1101 1104 1105 1123 C3' A A 53 OK 1121 1124 1125 1145 C3' C A 54 OK 1143 1146 1147 1165 C3' G A 55 OK 1163 1166 1167 1188 C3' G A 56 OK 1186 1189 1190 1211 C3' U A 57 OK 1209 1212 1213 1231 C3' U A 58 OK 1229 1232 1233 1251 C3' A A 59 OK 1249 1252 1253 1273 C3' U A 60 OK 1271 1274 1275 1293 C3' A A 61 OK 1291 1294 1295 1315 C3' C A 62 OK 1313 1316 1317 1335 C3' U A 63 OK 1333 1336 1337 1355 C3' C A 64 OK 1353 1356 1357 1375 C3' C A 65 OK 1373 1376 1377 1395 C3' G A 66 OK 1393 1396 1397 1418 C3' A A 67 OK 1416 1419 1420 1440 C3' A A 68 OK 1438 1441 1442 1462 C3' U A 69 OK 1460 1463 1464 1482 C3' G A 70 OK 1480 1483 1484 1505 C3' C A 71 OK 1503 1506 1507 1525 C3' C A 72 OK 1523 1526 1527 1545 C3' A A 73 OK 1543 1546 1547 1567 C3' C A 74 OK 1565 1568 1569 1587 C3' C A 75 OK 1585 1588 1589 1607 C3' U A 76 OK 1605 1608 1609 1627 C3' A A 77 OK 1625 1628 1629 1649 C3' G A 78 OK 1647 1650 1651 1672 C3' C A 79 OK 1670 1673 1674 1692 C3' C A 80 OK 1690 1693 1694 1712 C3' C A 81 OK 1710 1713 1714 1732 C3' A A 82 OK 1730 1733 1734 1754 C3' A A 83 OK 1752 1755 1756 1776 C3' A A 84 OK 1774 1777 1778 1798 C3' G A 85 OK 1796 1799 1800 1821 C3' U A 86 OK 1819 1822 1823 1841 C3' A A 87 OK 1839 1842 1843 1863 C3' G A 88 OK 1861 1864 1865 1886 C3' A A 89 OK 1884 1887 1888 1908 C3' G A 90 OK 1906 1909 1910 1931 C3' C A 91 OK 1929 1932 1933 1951 C3' A A 92 OK 1949 1952 1953 1973 C3' A A 93 OK 1971 1974 1975 1995 C3' G A 94 OK 1993 1996 1997 2018 C3' G A 95 OK 2016 2019 2020 2041 C3' A A 96 OK 2039 2042 2043 2063 C3' G A 97 OK 2061 2064 2065 2086 C3' A A 98 OK 2084 2087 2088 2108 C3' C A 99 OK 2106 2109 2110 2128 C3' U A 100 OK 2126 2129 2130 2148 C3' C A 101 OK 2146 2149 2150 2168 C3' A A 102 OK 2166 2169 2170 2191 C3' G B 1 OK 2189 2192 2193 2214 C3' G B 2 OK 2212 2215 2216 2237 C3' G B 3 OK 2235 2238 2239 2260 C3' C B 4 OK 2258 2261 2262 2280 C3' U B 5 OK 2278 2281 2282 2300 C3' A B 6 OK 2298 2301 2302 2322 C3' A B 7 OK 2320 2323 2324 2344 C3' A B 8 OK 2342 2345 2346 2366 C3' A B 9 OK 2364 2367 2368 2388 C3' G B 10 OK 2386 2389 2390 2411 C3' C B 11 OK 2409 2412 2413 2431 C3' A B 12 OK 2429 2432 2433 2453 C3' U B 13 OK 2451 2454 2455 2473 C3' G B 14 OK 2471 2474 2475 2496 C3' G B 15 OK 2494 2497 2498 2519 C3' U B 16 OK 2517 2520 2521 2539 C3' G B 17 OK 2537 2540 2541 2562 C3' G B 18 OK 2560 2563 2564 2585 C3' G B 19 OK 2583 2586 2587 2608 C3' A B 20 OK 2606 2609 2610 2630 C3' A B 21 OK 2628 2631 2632 2652 C3' A B 22 OK 2650 2653 2654 2674 C3' G B 23 OK 2672 2675 2676 2697 C3' U B 24 OK 2695 2698 2699 2717 C3' G B 25 OK 2715 2718 2719 2740 C3' A B 26 OK 2738 2741 2742 2762 C3' C B 27 OK 2760 2763 2764 2782 C3' G B 28 OK 2780 2783 2784 2805 C3' U B 29 OK 2803 2806 2807 2825 C3' G B 30 OK 2823 2826 2827 2848 C3' U B 31 OK 2846 2849 2850 2868 C3' A B 32 OK 2866 2869 2870 2890 C3' A B 33 OK 2888 2891 2892 2912 C3' U B 34 OK 2910 2913 2914 2932 C3' U B 35 OK 2930 2933 2934 2952 C3' C B 36 OK 2950 2953 2954 2972 C3' G B 37 OK 2970 2973 2974 2995 C3' U B 38 OK 2993 2996 2997 3015 C3' C B 39 OK 3013 3016 3017 3035 C3' C B 40 OK 3033 3036 3037 3055 C3' A B 41 OK 3053 3056 3057 3077 C3' C B 42 OK 3075 3078 3079 3097 C3' A B 43 OK 3095 3098 3099 3119 C3' U B 44 OK 3117 3120 3121 3139 C3' U B 45 OK 3137 3140 3141 3159 C3' A B 46 OK 3157 3160 3161 3181 C3' C B 47 OK 3179 3182 3183 3201 C3' U B 48 OK 3199 3202 3203 3221 C3' U B 49 OK 3219 3222 3223 3241 C3' G B 50 OK 3239 3242 3243 3264 C3' A B 51 OK 3262 3265 3266 3286 C3' U B 52 OK 3284 3287 3288 3306 C3' A B 53 OK 3304 3307 3308 3328 C3' C B 54 OK 3326 3329 3330 3348 C3' G B 55 OK 3346 3349 3350 3371 C3' G B 56 OK 3369 3372 3373 3394 C3' U B 57 OK 3392 3395 3396 3414 C3' U B 58 OK 3412 3415 3416 3434 C3' A B 59 OK 3432 3435 3436 3456 C3' U B 60 OK 3454 3457 3458 3476 C3' A B 61 OK 3474 3477 3478 3498 C3' C B 62 OK 3496 3499 3500 3518 C3' U B 63 OK 3516 3519 3520 3538 C3' C B 64 OK 3536 3539 3540 3558 C3' C B 65 OK 3556 3559 3560 3578 C3' G B 66 OK 3576 3579 3580 3601 C3' A B 67 OK 3599 3602 3603 3623 C3' A B 68 OK 3621 3624 3625 3645 C3' U B 69 OK 3643 3646 3647 3665 C3' G B 70 OK 3663 3666 3667 3688 C3' C B 71 OK 3686 3689 3690 3708 C3' C B 72 OK 3706 3709 3710 3728 C3' A B 73 OK 3726 3729 3730 3750 C3' C B 74 OK 3748 3751 3752 3770 C3' C B 75 OK 3768 3771 3772 3790 C3' U B 76 OK 3788 3791 3792 3810 C3' A B 77 OK 3808 3811 3812 3832 C3' G B 78 OK 3830 3833 3834 3855 C3' C B 79 OK 3853 3856 3857 3875 C3' C B 80 OK 3873 3876 3877 3895 C3' C B 81 OK 3893 3896 3897 3915 C3' A B 82 OK 3913 3916 3917 3937 C3' A B 83 OK 3935 3938 3939 3959 C3' A B 84 OK 3957 3960 3961 3981 C3' G B 85 OK 3979 3982 3983 4004 C3' U B 86 OK 4002 4005 4006 4024 C3' A B 87 OK 4022 4025 4026 4046 C3' G B 88 OK 4044 4047 4048 4069 C3' A B 89 OK 4067 4070 4071 4091 C3' G B 90 OK 4089 4092 4093 4114 C3' C B 91 OK 4112 4115 4116 4134 C3' A B 92 OK 4132 4135 4136 4156 C3' A B 93 OK 4154 4157 4158 4178 C3' G B 94 OK 4176 4179 4180 4201 C3' G B 95 OK 4199 4202 4203 4224 C3' A B 96 OK 4222 4225 4226 4246 C3' G B 97 OK 4244 4247 4248 4269 C3' A B 98 OK 4267 4270 4271 4291 C3' C B 99 OK 4289 4292 4293 4311 C3' U B 100 OK 4309 4312 4313 4331 C3' C B 101 OK 4329 4332 4333 4351 C3' A B 102 OK 4349 4352 4353 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 6 C4' G A 1 OK 8 5 7 29 C4' G A 2 OK 31 28 30 52 C4' G A 3 OK 54 51 53 75 C4' C A 4 OK 77 74 76 95 C4' U A 5 OK 97 94 96 115 C4' A A 6 OK 117 114 116 137 C4' A A 7 OK 139 136 138 159 C4' A A 8 OK 161 158 160 181 C4' A A 9 OK 183 180 182 203 C4' G A 10 OK 205 202 204 226 C4' C A 11 OK 228 225 227 246 C4' A A 12 OK 248 245 247 268 C4' U A 13 OK 270 267 269 288 C4' G A 14 OK 290 287 289 311 C4' G A 15 OK 313 310 312 334 C4' U A 16 OK 336 333 335 354 C4' G A 17 OK 356 353 355 377 C4' G A 18 OK 379 376 378 400 C4' G A 19 OK 402 399 401 423 C4' A A 20 OK 425 422 424 445 C4' A A 21 OK 447 444 446 467 C4' A A 22 OK 469 466 468 489 C4' G A 23 OK 491 488 490 512 C4' U A 24 OK 514 511 513 532 C4' G A 25 OK 534 531 533 555 C4' A A 26 OK 557 554 556 577 C4' C A 27 OK 579 576 578 597 C4' G A 28 OK 599 596 598 620 C4' U A 29 OK 622 619 621 640 C4' G A 30 OK 642 639 641 663 C4' U A 31 OK 665 662 664 683 C4' A A 32 OK 685 682 684 705 C4' A A 33 OK 707 704 706 727 C4' U A 34 OK 729 726 728 747 C4' U A 35 OK 749 746 748 767 C4' C A 36 OK 769 766 768 787 C4' G A 37 OK 789 786 788 810 C4' U A 38 OK 812 809 811 830 C4' C A 39 OK 832 829 831 850 C4' C A 40 OK 852 849 851 870 C4' A A 41 OK 872 869 871 892 C4' C A 42 OK 894 891 893 912 C4' A A 43 OK 914 911 913 934 C4' U A 44 OK 936 933 935 954 C4' U A 45 OK 956 953 955 974 C4' A A 46 OK 976 973 975 996 C4' C A 47 OK 998 995 997 1016 C4' U A 48 OK 1018 1015 1017 1036 C4' U A 49 OK 1038 1035 1037 1056 C4' G A 50 OK 1058 1055 1057 1079 C4' A A 51 OK 1081 1078 1080 1101 C4' U A 52 OK 1103 1100 1102 1121 C4' A A 53 OK 1123 1120 1122 1143 C4' C A 54 OK 1145 1142 1144 1163 C4' G A 55 OK 1165 1162 1164 1186 C4' G A 56 OK 1188 1185 1187 1209 C4' U A 57 OK 1211 1208 1210 1229 C4' U A 58 OK 1231 1228 1230 1249 C4' A A 59 OK 1251 1248 1250 1271 C4' U A 60 OK 1273 1270 1272 1291 C4' A A 61 OK 1293 1290 1292 1313 C4' C A 62 OK 1315 1312 1314 1333 C4' U A 63 OK 1335 1332 1334 1353 C4' C A 64 OK 1355 1352 1354 1373 C4' C A 65 OK 1375 1372 1374 1393 C4' G A 66 OK 1395 1392 1394 1416 C4' A A 67 OK 1418 1415 1417 1438 C4' A A 68 OK 1440 1437 1439 1460 C4' U A 69 OK 1462 1459 1461 1480 C4' G A 70 OK 1482 1479 1481 1503 C4' C A 71 OK 1505 1502 1504 1523 C4' C A 72 OK 1525 1522 1524 1543 C4' A A 73 OK 1545 1542 1544 1565 C4' C A 74 OK 1567 1564 1566 1585 C4' C A 75 OK 1587 1584 1586 1605 C4' U A 76 OK 1607 1604 1606 1625 C4' A A 77 OK 1627 1624 1626 1647 C4' G A 78 OK 1649 1646 1648 1670 C4' C A 79 OK 1672 1669 1671 1690 C4' C A 80 OK 1692 1689 1691 1710 C4' C A 81 OK 1712 1709 1711 1730 C4' A A 82 OK 1732 1729 1731 1752 C4' A A 83 OK 1754 1751 1753 1774 C4' A A 84 OK 1776 1773 1775 1796 C4' G A 85 OK 1798 1795 1797 1819 C4' U A 86 OK 1821 1818 1820 1839 C4' A A 87 OK 1841 1838 1840 1861 C4' G A 88 OK 1863 1860 1862 1884 C4' A A 89 OK 1886 1883 1885 1906 C4' G A 90 OK 1908 1905 1907 1929 C4' C A 91 OK 1931 1928 1930 1949 C4' A A 92 OK 1951 1948 1950 1971 C4' A A 93 OK 1973 1970 1972 1993 C4' G A 94 OK 1995 1992 1994 2016 C4' G A 95 OK 2018 2015 2017 2039 C4' A A 96 OK 2041 2038 2040 2061 C4' G A 97 OK 2063 2060 2062 2084 C4' A A 98 OK 2086 2083 2085 2106 C4' C A 99 OK 2108 2105 2107 2126 C4' U A 100 OK 2128 2125 2127 2146 C4' C A 101 OK 2148 2145 2147 2166 C4' A A 102 OK 2168 2165 2167 2189 C4' G B 1 OK 2191 2188 2190 2212 C4' G B 2 OK 2214 2211 2213 2235 C4' G B 3 OK 2237 2234 2236 2258 C4' C B 4 OK 2260 2257 2259 2278 C4' U B 5 OK 2280 2277 2279 2298 C4' A B 6 OK 2300 2297 2299 2320 C4' A B 7 OK 2322 2319 2321 2342 C4' A B 8 OK 2344 2341 2343 2364 C4' A B 9 OK 2366 2363 2365 2386 C4' G B 10 OK 2388 2385 2387 2409 C4' C B 11 OK 2411 2408 2410 2429 C4' A B 12 OK 2431 2428 2430 2451 C4' U B 13 OK 2453 2450 2452 2471 C4' G B 14 OK 2473 2470 2472 2494 C4' G B 15 OK 2496 2493 2495 2517 C4' U B 16 OK 2519 2516 2518 2537 C4' G B 17 OK 2539 2536 2538 2560 C4' G B 18 OK 2562 2559 2561 2583 C4' G B 19 OK 2585 2582 2584 2606 C4' A B 20 OK 2608 2605 2607 2628 C4' A B 21 OK 2630 2627 2629 2650 C4' A B 22 OK 2652 2649 2651 2672 C4' G B 23 OK 2674 2671 2673 2695 C4' U B 24 OK 2697 2694 2696 2715 C4' G B 25 OK 2717 2714 2716 2738 C4' A B 26 OK 2740 2737 2739 2760 C4' C B 27 OK 2762 2759 2761 2780 C4' G B 28 OK 2782 2779 2781 2803 C4' U B 29 OK 2805 2802 2804 2823 C4' G B 30 OK 2825 2822 2824 2846 C4' U B 31 OK 2848 2845 2847 2866 C4' A B 32 OK 2868 2865 2867 2888 C4' A B 33 OK 2890 2887 2889 2910 C4' U B 34 OK 2912 2909 2911 2930 C4' U B 35 OK 2932 2929 2931 2950 C4' C B 36 OK 2952 2949 2951 2970 C4' G B 37 OK 2972 2969 2971 2993 C4' U B 38 OK 2995 2992 2994 3013 C4' C B 39 OK 3015 3012 3014 3033 C4' C B 40 OK 3035 3032 3034 3053 C4' A B 41 OK 3055 3052 3054 3075 C4' C B 42 OK 3077 3074 3076 3095 C4' A B 43 OK 3097 3094 3096 3117 C4' U B 44 OK 3119 3116 3118 3137 C4' U B 45 OK 3139 3136 3138 3157 C4' A B 46 OK 3159 3156 3158 3179 C4' C B 47 OK 3181 3178 3180 3199 C4' U B 48 OK 3201 3198 3200 3219 C4' U B 49 OK 3221 3218 3220 3239 C4' G B 50 OK 3241 3238 3240 3262 C4' A B 51 OK 3264 3261 3263 3284 C4' U B 52 OK 3286 3283 3285 3304 C4' A B 53 OK 3306 3303 3305 3326 C4' C B 54 OK 3328 3325 3327 3346 C4' G B 55 OK 3348 3345 3347 3369 C4' G B 56 OK 3371 3368 3370 3392 C4' U B 57 OK 3394 3391 3393 3412 C4' U B 58 OK 3414 3411 3413 3432 C4' A B 59 OK 3434 3431 3433 3454 C4' U B 60 OK 3456 3453 3455 3474 C4' A B 61 OK 3476 3473 3475 3496 C4' C B 62 OK 3498 3495 3497 3516 C4' U B 63 OK 3518 3515 3517 3536 C4' C B 64 OK 3538 3535 3537 3556 C4' C B 65 OK 3558 3555 3557 3576 C4' G B 66 OK 3578 3575 3577 3599 C4' A B 67 OK 3601 3598 3600 3621 C4' A B 68 OK 3623 3620 3622 3643 C4' U B 69 OK 3645 3642 3644 3663 C4' G B 70 OK 3665 3662 3664 3686 C4' C B 71 OK 3688 3685 3687 3706 C4' C B 72 OK 3708 3705 3707 3726 C4' A B 73 OK 3728 3725 3727 3748 C4' C B 74 OK 3750 3747 3749 3768 C4' C B 75 OK 3770 3767 3769 3788 C4' U B 76 OK 3790 3787 3789 3808 C4' A B 77 OK 3810 3807 3809 3830 C4' G B 78 OK 3832 3829 3831 3853 C4' C B 79 OK 3855 3852 3854 3873 C4' C B 80 OK 3875 3872 3874 3893 C4' C B 81 OK 3895 3892 3894 3913 C4' A B 82 OK 3915 3912 3914 3935 C4' A B 83 OK 3937 3934 3936 3957 C4' A B 84 OK 3959 3956 3958 3979 C4' G B 85 OK 3981 3978 3980 4002 C4' U B 86 OK 4004 4001 4003 4022 C4' A B 87 OK 4024 4021 4023 4044 C4' G B 88 OK 4046 4043 4045 4067 C4' A B 89 OK 4069 4066 4068 4089 C4' G B 90 OK 4091 4088 4090 4112 C4' C B 91 OK 4114 4111 4113 4132 C4' A B 92 OK 4134 4131 4133 4154 C4' A B 93 OK 4156 4153 4155 4176 C4' G B 94 OK 4178 4175 4177 4199 C4' G B 95 OK 4201 4198 4200 4222 C4' A B 96 OK 4224 4221 4223 4244 C4' G B 97 OK 4246 4243 4245 4267 C4' A B 98 OK 4269 4266 4268 4289 C4' C B 99 OK 4291 4288 4290 4309 C4' U B 100 OK 4311 4308 4310 4329 C4' C B 101 OK 4331 4328 4330 4349 C4' A B 102 OK 4351 4348 4350 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 5 C5' G A 1 4 6 28 C5' G A 2 27 29 51 C5' G A 3 50 52 74 C5' C A 4 73 75 94 C5' U A 5 93 95 114 C5' A A 6 113 115 136 C5' A A 7 135 137 158 C5' A A 8 157 159 180 C5' A A 9 179 181 202 C5' G A 10 201 203 225 C5' C A 11 224 226 245 C5' A A 12 244 246 267 C5' U A 13 266 268 287 C5' G A 14 286 288 310 C5' G A 15 309 311 333 C5' U A 16 332 334 353 C5' G A 17 352 354 376 C5' G A 18 375 377 399 C5' G A 19 398 400 422 C5' A A 20 421 423 444 C5' A A 21 443 445 466 C5' A A 22 465 467 488 C5' G A 23 487 489 511 C5' U A 24 510 512 531 C5' G A 25 530 532 554 C5' A A 26 553 555 576 C5' C A 27 575 577 596 C5' G A 28 595 597 619 C5' U A 29 618 620 639 C5' G A 30 638 640 662 C5' U A 31 661 663 682 C5' A A 32 681 683 704 C5' A A 33 703 705 726 C5' U A 34 725 727 746 C5' U A 35 745 747 766 C5' C A 36 765 767 786 C5' G A 37 785 787 809 C5' U A 38 808 810 829 C5' C A 39 828 830 849 C5' C A 40 848 850 869 C5' A A 41 868 870 891 C5' C A 42 890 892 911 C5' A A 43 910 912 933 C5' U A 44 932 934 953 C5' U A 45 952 954 973 C5' A A 46 972 974 995 C5' C A 47 994 996 1015 C5' U A 48 1014 1016 1035 C5' U A 49 1034 1036 1055 C5' G A 50 1054 1056 1078 C5' A A 51 1077 1079 1100 C5' U A 52 1099 1101 1120 C5' A A 53 1119 1121 1142 C5' C A 54 1141 1143 1162 C5' G A 55 1161 1163 1185 C5' G A 56 1184 1186 1208 C5' U A 57 1207 1209 1228 C5' U A 58 1227 1229 1248 C5' A A 59 1247 1249 1270 C5' U A 60 1269 1271 1290 C5' A A 61 1289 1291 1312 C5' C A 62 1311 1313 1332 C5' U A 63 1331 1333 1352 C5' C A 64 1351 1353 1372 C5' C A 65 1371 1373 1392 C5' G A 66 1391 1393 1415 C5' A A 67 1414 1416 1437 C5' A A 68 1436 1438 1459 C5' U A 69 1458 1460 1479 C5' G A 70 1478 1480 1502 C5' C A 71 1501 1503 1522 C5' C A 72 1521 1523 1542 C5' A A 73 1541 1543 1564 C5' C A 74 1563 1565 1584 C5' C A 75 1583 1585 1604 C5' U A 76 1603 1605 1624 C5' A A 77 1623 1625 1646 C5' G A 78 1645 1647 1669 C5' C A 79 1668 1670 1689 C5' C A 80 1688 1690 1709 C5' C A 81 1708 1710 1729 C5' A A 82 1728 1730 1751 C5' A A 83 1750 1752 1773 C5' A A 84 1772 1774 1795 C5' G A 85 1794 1796 1818 C5' U A 86 1817 1819 1838 C5' A A 87 1837 1839 1860 C5' G A 88 1859 1861 1883 C5' A A 89 1882 1884 1905 C5' G A 90 1904 1906 1928 C5' C A 91 1927 1929 1948 C5' A A 92 1947 1949 1970 C5' A A 93 1969 1971 1992 C5' G A 94 1991 1993 2015 C5' G A 95 2014 2016 2038 C5' A A 96 2037 2039 2060 C5' G A 97 2059 2061 2083 C5' A A 98 2082 2084 2105 C5' C A 99 2104 2106 2125 C5' U A 100 2124 2126 2145 C5' C A 101 2144 2146 2165 C5' A A 102 2164 2166 2188 C5' G B 1 2187 2189 2211 C5' G B 2 2210 2212 2234 C5' G B 3 2233 2235 2257 C5' C B 4 2256 2258 2277 C5' U B 5 2276 2278 2297 C5' A B 6 2296 2298 2319 C5' A B 7 2318 2320 2341 C5' A B 8 2340 2342 2363 C5' A B 9 2362 2364 2385 C5' G B 10 2384 2386 2408 C5' C B 11 2407 2409 2428 C5' A B 12 2427 2429 2450 C5' U B 13 2449 2451 2470 C5' G B 14 2469 2471 2493 C5' G B 15 2492 2494 2516 C5' U B 16 2515 2517 2536 C5' G B 17 2535 2537 2559 C5' G B 18 2558 2560 2582 C5' G B 19 2581 2583 2605 C5' A B 20 2604 2606 2627 C5' A B 21 2626 2628 2649 C5' A B 22 2648 2650 2671 C5' G B 23 2670 2672 2694 C5' U B 24 2693 2695 2714 C5' G B 25 2713 2715 2737 C5' A B 26 2736 2738 2759 C5' C B 27 2758 2760 2779 C5' G B 28 2778 2780 2802 C5' U B 29 2801 2803 2822 C5' G B 30 2821 2823 2845 C5' U B 31 2844 2846 2865 C5' A B 32 2864 2866 2887 C5' A B 33 2886 2888 2909 C5' U B 34 2908 2910 2929 C5' U B 35 2928 2930 2949 C5' C B 36 2948 2950 2969 C5' G B 37 2968 2970 2992 C5' U B 38 2991 2993 3012 C5' C B 39 3011 3013 3032 C5' C B 40 3031 3033 3052 C5' A B 41 3051 3053 3074 C5' C B 42 3073 3075 3094 C5' A B 43 3093 3095 3116 C5' U B 44 3115 3117 3136 C5' U B 45 3135 3137 3156 C5' A B 46 3155 3157 3178 C5' C B 47 3177 3179 3198 C5' U B 48 3197 3199 3218 C5' U B 49 3217 3219 3238 C5' G B 50 3237 3239 3261 C5' A B 51 3260 3262 3283 C5' U B 52 3282 3284 3303 C5' A B 53 3302 3304 3325 C5' C B 54 3324 3326 3345 C5' G B 55 3344 3346 3368 C5' G B 56 3367 3369 3391 C5' U B 57 3390 3392 3411 C5' U B 58 3410 3412 3431 C5' A B 59 3430 3432 3453 C5' U B 60 3452 3454 3473 C5' A B 61 3472 3474 3495 C5' C B 62 3494 3496 3515 C5' U B 63 3514 3516 3535 C5' C B 64 3534 3536 3555 C5' C B 65 3554 3556 3575 C5' G B 66 3574 3576 3598 C5' A B 67 3597 3599 3620 C5' A B 68 3619 3621 3642 C5' U B 69 3641 3643 3662 C5' G B 70 3661 3663 3685 C5' C B 71 3684 3686 3705 C5' C B 72 3704 3706 3725 C5' A B 73 3724 3726 3747 C5' C B 74 3746 3748 3767 C5' C B 75 3766 3768 3787 C5' U B 76 3786 3788 3807 C5' A B 77 3806 3808 3829 C5' G B 78 3828 3830 3852 C5' C B 79 3851 3853 3872 C5' C B 80 3871 3873 3892 C5' C B 81 3891 3893 3912 C5' A B 82 3911 3913 3934 C5' A B 83 3933 3935 3956 C5' A B 84 3955 3957 3978 C5' G B 85 3977 3979 4001 C5' U B 86 4000 4002 4021 C5' A B 87 4020 4022 4043 C5' G B 88 4042 4044 4066 C5' A B 89 4065 4067 4088 C5' G B 90 4087 4089 4111 C5' C B 91 4110 4112 4131 C5' A B 92 4130 4132 4153 C5' A B 93 4152 4154 4175 C5' G B 94 4174 4176 4198 C5' G B 95 4197 4199 4221 C5' A B 96 4220 4222 4243 C5' G B 97 4242 4244 4266 C5' A B 98 4265 4267 4288 C5' C B 99 4287 4289 4308 C5' U B 100 4307 4309 4328 C5' C B 101 4327 4329 4348 C5' A B 102 4347 4349 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 1 P G A 1 distorted distorted 2 3 4 24 P G A 2 distorted distorted 9 25 26 27 47 P G A 3 distorted distorted 32 48 49 50 70 P C A 4 distorted distorted 55 71 72 73 90 P U A 5 distorted distorted 78 91 92 93 110 P A A 6 distorted distorted 98 111 112 113 132 P A A 7 distorted distorted 118 133 134 135 154 P A A 8 distorted distorted 140 155 156 157 176 P A A 9 distorted distorted 162 177 178 179 198 P G A 10 distorted distorted 184 199 200 201 221 P C A 11 distorted distorted 206 222 223 224 241 P A A 12 distorted distorted 229 242 243 244 263 P U A 13 distorted distorted 249 264 265 266 283 P G A 14 distorted distorted 271 284 285 286 306 P G A 15 distorted distorted 291 307 308 309 329 P U A 16 distorted distorted 314 330 331 332 349 P G A 17 distorted distorted 337 350 351 352 372 P G A 18 distorted distorted 357 373 374 375 395 P G A 19 distorted distorted 380 396 397 398 418 P A A 20 distorted distorted 403 419 420 421 440 P A A 21 distorted distorted 426 441 442 443 462 P A A 22 distorted distorted 448 463 464 465 484 P G A 23 distorted distorted 470 485 486 487 507 P U A 24 distorted distorted 492 508 509 510 527 P G A 25 distorted distorted 515 528 529 530 550 P A A 26 distorted distorted 535 551 552 553 572 P C A 27 distorted distorted 558 573 574 575 592 P G A 28 distorted distorted 580 593 594 595 615 P U A 29 distorted distorted 600 616 617 618 635 P G A 30 distorted distorted 623 636 637 638 658 P U A 31 distorted distorted 643 659 660 661 678 P A A 32 distorted distorted 666 679 680 681 700 P A A 33 distorted distorted 686 701 702 703 722 P U A 34 distorted distorted 708 723 724 725 742 P U A 35 distorted distorted 730 743 744 745 762 P C A 36 distorted distorted 750 763 764 765 782 P G A 37 distorted distorted 770 783 784 785 805 P U A 38 distorted distorted 790 806 807 808 825 P C A 39 distorted distorted 813 826 827 828 845 P C A 40 distorted distorted 833 846 847 848 865 P A A 41 distorted distorted 853 866 867 868 887 P C A 42 distorted distorted 873 888 889 890 907 P A A 43 distorted distorted 895 908 909 910 929 P U A 44 distorted distorted 915 930 931 932 949 P U A 45 distorted distorted 937 950 951 952 969 P A A 46 distorted distorted 957 970 971 972 991 P C A 47 distorted distorted 977 992 993 994 1011 P U A 48 distorted distorted 999 1012 1013 1014 1031 P U A 49 distorted distorted 1019 1032 1033 1034 1051 P G A 50 distorted distorted 1039 1052 1053 1054 1074 P A A 51 distorted distorted 1059 1075 1076 1077 1096 P U A 52 distorted distorted 1082 1097 1098 1099 1116 P A A 53 distorted distorted 1104 1117 1118 1119 1138 P C A 54 distorted distorted 1124 1139 1140 1141 1158 P G A 55 distorted distorted 1146 1159 1160 1161 1181 P G A 56 distorted distorted 1166 1182 1183 1184 1204 P U A 57 distorted distorted 1189 1205 1206 1207 1224 P U A 58 distorted distorted 1212 1225 1226 1227 1244 P A A 59 distorted distorted 1232 1245 1246 1247 1266 P U A 60 distorted distorted 1252 1267 1268 1269 1286 P A A 61 distorted distorted 1274 1287 1288 1289 1308 P C A 62 distorted distorted 1294 1309 1310 1311 1328 P U A 63 distorted distorted 1316 1329 1330 1331 1348 P C A 64 distorted distorted 1336 1349 1350 1351 1368 P C A 65 distorted distorted 1356 1369 1370 1371 1388 P G A 66 distorted distorted 1376 1389 1390 1391 1411 P A A 67 distorted distorted 1396 1412 1413 1414 1433 P A A 68 distorted distorted 1419 1434 1435 1436 1455 P U A 69 distorted distorted 1441 1456 1457 1458 1475 P G A 70 distorted distorted 1463 1476 1477 1478 1498 P C A 71 distorted distorted 1483 1499 1500 1501 1518 P C A 72 distorted distorted 1506 1519 1520 1521 1538 P A A 73 distorted distorted 1526 1539 1540 1541 1560 P C A 74 distorted distorted 1546 1561 1562 1563 1580 P C A 75 distorted distorted 1568 1581 1582 1583 1600 P U A 76 distorted distorted 1588 1601 1602 1603 1620 P A A 77 distorted distorted 1608 1621 1622 1623 1642 P G A 78 distorted distorted 1628 1643 1644 1645 1665 P C A 79 distorted distorted 1650 1666 1667 1668 1685 P C A 80 distorted distorted 1673 1686 1687 1688 1705 P C A 81 distorted distorted 1693 1706 1707 1708 1725 P A A 82 distorted distorted 1713 1726 1727 1728 1747 P A A 83 distorted distorted 1733 1748 1749 1750 1769 P A A 84 distorted distorted 1755 1770 1771 1772 1791 P G A 85 distorted distorted 1777 1792 1793 1794 1814 P U A 86 distorted distorted 1799 1815 1816 1817 1834 P A A 87 distorted distorted 1822 1835 1836 1837 1856 P G A 88 distorted distorted 1842 1857 1858 1859 1879 P A A 89 distorted distorted 1864 1880 1881 1882 1901 P G A 90 distorted distorted 1887 1902 1903 1904 1924 P C A 91 distorted distorted 1909 1925 1926 1927 1944 P A A 92 distorted distorted 1932 1945 1946 1947 1966 P A A 93 distorted distorted 1952 1967 1968 1969 1988 P G A 94 distorted distorted 1974 1989 1990 1991 2011 P G A 95 distorted distorted 1996 2012 2013 2014 2034 P A A 96 distorted distorted 2019 2035 2036 2037 2056 P G A 97 distorted distorted 2042 2057 2058 2059 2079 P A A 98 distorted distorted 2064 2080 2081 2082 2101 P C A 99 distorted distorted 2087 2102 2103 2104 2121 P U A 100 distorted distorted 2109 2122 2123 2124 2141 P C A 101 distorted distorted 2129 2142 2143 2144 2161 P A A 102 distorted distorted 2149 2162 2163 2164 2184 P G B 1 distorted distorted 2185 2186 2187 2207 P G B 2 distorted distorted 2192 2208 2209 2210 2230 P G B 3 distorted distorted 2215 2231 2232 2233 2253 P C B 4 distorted distorted 2238 2254 2255 2256 2273 P U B 5 distorted distorted 2261 2274 2275 2276 2293 P A B 6 distorted distorted 2281 2294 2295 2296 2315 P A B 7 distorted distorted 2301 2316 2317 2318 2337 P A B 8 distorted distorted 2323 2338 2339 2340 2359 P A B 9 distorted distorted 2345 2360 2361 2362 2381 P G B 10 distorted distorted 2367 2382 2383 2384 2404 P C B 11 distorted distorted 2389 2405 2406 2407 2424 P A B 12 distorted distorted 2412 2425 2426 2427 2446 P U B 13 distorted distorted 2432 2447 2448 2449 2466 P G B 14 distorted distorted 2454 2467 2468 2469 2489 P G B 15 distorted distorted 2474 2490 2491 2492 2512 P U B 16 distorted distorted 2497 2513 2514 2515 2532 P G B 17 distorted distorted 2520 2533 2534 2535 2555 P G B 18 distorted distorted 2540 2556 2557 2558 2578 P G B 19 distorted distorted 2563 2579 2580 2581 2601 P A B 20 distorted distorted 2586 2602 2603 2604 2623 P A B 21 distorted distorted 2609 2624 2625 2626 2645 P A B 22 distorted distorted 2631 2646 2647 2648 2667 P G B 23 distorted distorted 2653 2668 2669 2670 2690 P U B 24 distorted distorted 2675 2691 2692 2693 2710 P G B 25 distorted distorted 2698 2711 2712 2713 2733 P A B 26 distorted distorted 2718 2734 2735 2736 2755 P C B 27 distorted distorted 2741 2756 2757 2758 2775 P G B 28 distorted distorted 2763 2776 2777 2778 2798 P U B 29 distorted distorted 2783 2799 2800 2801 2818 P G B 30 distorted distorted 2806 2819 2820 2821 2841 P U B 31 distorted distorted 2826 2842 2843 2844 2861 P A B 32 distorted distorted 2849 2862 2863 2864 2883 P A B 33 distorted distorted 2869 2884 2885 2886 2905 P U B 34 distorted distorted 2891 2906 2907 2908 2925 P U B 35 distorted distorted 2913 2926 2927 2928 2945 P C B 36 distorted distorted 2933 2946 2947 2948 2965 P G B 37 distorted distorted 2953 2966 2967 2968 2988 P U B 38 distorted distorted 2973 2989 2990 2991 3008 P C B 39 distorted distorted 2996 3009 3010 3011 3028 P C B 40 distorted distorted 3016 3029 3030 3031 3048 P A B 41 distorted distorted 3036 3049 3050 3051 3070 P C B 42 distorted distorted 3056 3071 3072 3073 3090 P A B 43 distorted distorted 3078 3091 3092 3093 3112 P U B 44 distorted distorted 3098 3113 3114 3115 3132 P U B 45 distorted distorted 3120 3133 3134 3135 3152 P A B 46 distorted distorted 3140 3153 3154 3155 3174 P C B 47 distorted distorted 3160 3175 3176 3177 3194 P U B 48 distorted distorted 3182 3195 3196 3197 3214 P U B 49 distorted distorted 3202 3215 3216 3217 3234 P G B 50 distorted distorted 3222 3235 3236 3237 3257 P A B 51 distorted distorted 3242 3258 3259 3260 3279 P U B 52 distorted distorted 3265 3280 3281 3282 3299 P A B 53 distorted distorted 3287 3300 3301 3302 3321 P C B 54 distorted distorted 3307 3322 3323 3324 3341 P G B 55 distorted distorted 3329 3342 3343 3344 3364 P G B 56 distorted distorted 3349 3365 3366 3367 3387 P U B 57 distorted distorted 3372 3388 3389 3390 3407 P U B 58 distorted distorted 3395 3408 3409 3410 3427 P A B 59 distorted distorted 3415 3428 3429 3430 3449 P U B 60 distorted distorted 3435 3450 3451 3452 3469 P A B 61 distorted distorted 3457 3470 3471 3472 3491 P C B 62 distorted distorted 3477 3492 3493 3494 3511 P U B 63 distorted distorted 3499 3512 3513 3514 3531 P C B 64 distorted distorted 3519 3532 3533 3534 3551 P C B 65 distorted distorted 3539 3552 3553 3554 3571 P G B 66 distorted distorted 3559 3572 3573 3574 3594 P A B 67 distorted distorted 3579 3595 3596 3597 3616 P A B 68 distorted distorted 3602 3617 3618 3619 3638 P U B 69 distorted distorted 3624 3639 3640 3641 3658 P G B 70 distorted distorted 3646 3659 3660 3661 3681 P C B 71 distorted distorted 3666 3682 3683 3684 3701 P C B 72 distorted distorted 3689 3702 3703 3704 3721 P A B 73 distorted distorted 3709 3722 3723 3724 3743 P C B 74 distorted distorted 3729 3744 3745 3746 3763 P C B 75 distorted distorted 3751 3764 3765 3766 3783 P U B 76 distorted distorted 3771 3784 3785 3786 3803 P A B 77 distorted distorted 3791 3804 3805 3806 3825 P G B 78 distorted distorted 3811 3826 3827 3828 3848 P C B 79 distorted distorted 3833 3849 3850 3851 3868 P C B 80 distorted distorted 3856 3869 3870 3871 3888 P C B 81 distorted distorted 3876 3889 3890 3891 3908 P A B 82 distorted distorted 3896 3909 3910 3911 3930 P A B 83 distorted distorted 3916 3931 3932 3933 3952 P A B 84 distorted distorted 3938 3953 3954 3955 3974 P G B 85 distorted distorted 3960 3975 3976 3977 3997 P U B 86 distorted distorted 3982 3998 3999 4000 4017 P A B 87 distorted distorted 4005 4018 4019 4020 4039 P G B 88 distorted distorted 4025 4040 4041 4042 4062 P A B 89 distorted distorted 4047 4063 4064 4065 4084 P G B 90 distorted distorted 4070 4085 4086 4087 4107 P C B 91 distorted distorted 4092 4108 4109 4110 4127 P A B 92 distorted distorted 4115 4128 4129 4130 4149 P A B 93 distorted distorted 4135 4150 4151 4152 4171 P G B 94 distorted distorted 4157 4172 4173 4174 4194 P G B 95 distorted distorted 4179 4195 4196 4197 4217 P A B 96 distorted distorted 4202 4218 4219 4220 4239 P G B 97 distorted distorted 4225 4240 4241 4242 4262 P A B 98 distorted distorted 4247 4263 4264 4265 4284 P C B 99 distorted distorted 4270 4285 4286 4287 4304 P U B 100 distorted distorted 4292 4305 4306 4307 4324 P C B 101 distorted distorted 4312 4325 4326 4327 4344 P A B 102 distorted distorted 4332 4345 4346 4347 4404 P I2A A 201 4502 P I2A B 201 ---------------------------------------------------------------------------------