ID code: '3ZN8' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 4487 C1' U G 8 beta 4482 4488 4485 4507 C1' G G 9 beta 4502 4508 4505 4530 C1' G G 10 beta 4525 4531 4528 4553 C1' U G 11 beta 4548 4554 4551 4573 C1' G G 12 beta 4568 4574 4571 4596 C1' C G 13 beta 4591 4597 4594 4616 C1' A G 14 beta 4611 4617 4614 4638 C1' G G 15 beta 4633 4639 4636 4661 C1' C G 16 beta 4656 4662 4659 4681 C1' G G 17 beta 4676 4682 4679 4704 C1' C G 18 beta 4699 4705 4702 4724 C1' A G 19 beta 4719 4725 4722 4746 C1' G G 20 beta 4741 4747 4744 4769 C1' C G 21 beta 4764 4770 4767 4789 C1' G G 22 beta 4784 4790 4787 4812 C1' C G 23 beta 4807 4813 4810 4832 C1' G G 24 beta 4827 4833 4830 4855 C1' G G 25 beta 4850 4856 4853 4878 C1' A G 26 beta 4873 4879 4876 4900 C1' C G 27 beta 4895 4901 4898 4920 C1' G G 28 beta 4915 4921 4918 4943 C1' C G 29 beta 4938 4944 4941 4963 C1' C G 30 beta 4958 4964 4961 4983 C1' C G 31 beta 4978 4984 4981 5003 C1' G G 32 beta 4998 5004 5001 5026 C1' A G 33 beta 5021 5027 5024 5048 C1' A G 34 beta 5043 5049 5046 5070 C1' C G 35 beta 5065 5071 5068 5090 C1' C G 36 beta 5085 5091 5088 5110 C1' U G 37 beta 5105 5111 5108 5130 C1' G G 38 beta 5125 5131 5128 5153 C1' G G 39 beta 5148 5154 5151 5176 C1' U G 40 beta 5171 5177 5174 5196 C1' C G 41 beta 5191 5197 5194 5216 C1' A G 42 beta 5211 5217 5214 5238 C1' G G 43 beta 5233 5239 5236 5261 C1' A G 44 beta 5256 5262 5259 5283 C1' G G 45 beta 5278 5284 5281 5306 C1' C G 46 beta 5301 5307 5304 5326 C1' C G 47 beta 5321 5327 5324 5346 C1' G G 48 beta 5341 5347 5344 5369 C1' G G 49 beta 5364 5370 5367 5392 C1' A G 50 beta 5387 5393 5390 5414 C1' A G 51 beta 5409 5415 5412 5436 C1' G G 52 beta 5431 5437 5434 5459 C1' G G 53 beta 5454 5460 5457 5482 C1' C G 54 beta 5477 5483 5480 5502 C1' A G 55 beta 5497 5503 5500 5524 C1' G G 56 beta 5519 5525 5522 5547 C1' C G 57 beta 5542 5548 5545 5567 C1' A G 58 beta 5562 5568 5565 5589 C1' G G 59 beta 5584 5590 5587 5612 C1' C G 60 beta 5607 5613 5610 5632 C1' C G 61 beta 5627 5633 5630 5652 C1' A G 62 beta 5647 5653 5650 5674 C1' U G 63 beta 5669 5675 5672 5694 C1' A G 64 beta 5689 5695 5692 5716 C1' A G 65 beta 5711 5717 5714 5738 C1' G G 66 beta 5733 5739 5736 5761 C1' G G 67 beta 5756 5762 5759 5784 C1' G G 68 beta 5779 5785 5782 5807 C1' A G 69 beta 5802 5808 5805 5829 C1' U G 70 beta 5824 5830 5827 5849 C1' G G 71 beta 5844 5850 5847 5872 C1' C G 72 beta 5867 5873 5870 5892 C1' U G 73 beta 5887 5893 5890 5912 C1' U G 74 beta 5907 5913 5910 5932 C1' U G 75 beta 5927 5933 5930 5952 C1' G G 76 beta 5947 5953 5950 5975 C1' C G 77 beta 5970 5976 5973 5995 C1' G G 78 beta 5990 5996 5993 6018 C1' G G 79 beta 6013 6019 6016 6041 C1' G G 80 beta 6036 6042 6039 6064 C1' U G 81 beta 6059 6065 6062 6084 C1' G G 82 beta 6079 6085 6082 6107 C1' C G 83 beta 6102 6108 6105 6127 C1' C G 84 beta 6122 6128 6125 6147 C1' G G 85 beta 6142 6148 6145 6170 C1' U G 86 beta 6165 6171 6168 6190 C1' U G 87 beta 6185 6191 6188 6210 C1' G G 88 beta 6205 6211 6208 6233 C1' C G 89 beta 6228 6234 6231 6253 C1' C G 90 beta 6248 6254 6251 6273 C1' U G 91 beta 6268 6274 6271 6293 C1' U G 92 beta 6288 6294 6291 6313 C1' C G 93 beta 6308 6314 6311 6333 C1' C G 94 beta 6328 6334 6331 6353 C1' G G 95 beta 6348 6354 6351 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 4485 C2' U G 8 OK 4487 4483 4486 4505 C2' G G 9 OK 4507 4503 4506 4528 C2' G G 10 OK 4530 4526 4529 4551 C2' U G 11 OK 4553 4549 4552 4571 C2' G G 12 OK 4573 4569 4572 4594 C2' C G 13 OK 4596 4592 4595 4614 C2' A G 14 OK 4616 4612 4615 4636 C2' G G 15 OK 4638 4634 4637 4659 C2' C G 16 OK 4661 4657 4660 4679 C2' G G 17 OK 4681 4677 4680 4702 C2' C G 18 OK 4704 4700 4703 4722 C2' A G 19 OK 4724 4720 4723 4744 C2' G G 20 OK 4746 4742 4745 4767 C2' C G 21 OK 4769 4765 4768 4787 C2' G G 22 OK 4789 4785 4788 4810 C2' C G 23 OK 4812 4808 4811 4830 C2' G G 24 OK 4832 4828 4831 4853 C2' G G 25 OK 4855 4851 4854 4876 C2' A G 26 OK 4878 4874 4877 4898 C2' C G 27 OK 4900 4896 4899 4918 C2' G G 28 OK 4920 4916 4919 4941 C2' C G 29 OK 4943 4939 4942 4961 C2' C G 30 OK 4963 4959 4962 4981 C2' C G 31 OK 4983 4979 4982 5001 C2' G G 32 OK 5003 4999 5002 5024 C2' A G 33 OK 5026 5022 5025 5046 C2' A G 34 OK 5048 5044 5047 5068 C2' C G 35 OK 5070 5066 5069 5088 C2' C G 36 OK 5090 5086 5089 5108 C2' U G 37 OK 5110 5106 5109 5128 C2' G G 38 OK 5130 5126 5129 5151 C2' G G 39 OK 5153 5149 5152 5174 C2' U G 40 OK 5176 5172 5175 5194 C2' C G 41 OK 5196 5192 5195 5214 C2' A G 42 OK 5216 5212 5215 5236 C2' G G 43 OK 5238 5234 5237 5259 C2' A G 44 OK 5261 5257 5260 5281 C2' G G 45 OK 5283 5279 5282 5304 C2' C G 46 OK 5306 5302 5305 5324 C2' C G 47 OK 5326 5322 5325 5344 C2' G G 48 OK 5346 5342 5345 5367 C2' G G 49 OK 5369 5365 5368 5390 C2' A G 50 OK 5392 5388 5391 5412 C2' A G 51 OK 5414 5410 5413 5434 C2' G G 52 OK 5436 5432 5435 5457 C2' G G 53 OK 5459 5455 5458 5480 C2' C G 54 OK 5482 5478 5481 5500 C2' A G 55 OK 5502 5498 5501 5522 C2' G G 56 OK 5524 5520 5523 5545 C2' C G 57 OK 5547 5543 5546 5565 C2' A G 58 OK 5567 5563 5566 5587 C2' G G 59 OK 5589 5585 5588 5610 C2' C G 60 OK 5612 5608 5611 5630 C2' C G 61 OK 5632 5628 5631 5650 C2' A G 62 OK 5652 5648 5651 5672 C2' U G 63 OK 5674 5670 5673 5692 C2' A G 64 OK 5694 5690 5693 5714 C2' A G 65 OK 5716 5712 5715 5736 C2' G G 66 OK 5738 5734 5737 5759 C2' G G 67 OK 5761 5757 5760 5782 C2' G G 68 OK 5784 5780 5783 5805 C2' A G 69 OK 5807 5803 5806 5827 C2' U G 70 OK 5829 5825 5828 5847 C2' G G 71 OK 5849 5845 5848 5870 C2' C G 72 OK 5872 5868 5871 5890 C2' U G 73 OK 5892 5888 5891 5910 C2' U G 74 OK 5912 5908 5911 5930 C2' U G 75 OK 5932 5928 5931 5950 C2' G G 76 OK 5952 5948 5951 5973 C2' C G 77 OK 5975 5971 5974 5993 C2' G G 78 OK 5995 5991 5994 6016 C2' G G 79 OK 6018 6014 6017 6039 C2' G G 80 OK 6041 6037 6040 6062 C2' U G 81 OK 6064 6060 6063 6082 C2' G G 82 OK 6084 6080 6083 6105 C2' C G 83 OK 6107 6103 6106 6125 C2' C G 84 OK 6127 6123 6126 6145 C2' G G 85 OK 6147 6143 6146 6168 C2' U G 86 OK 6170 6166 6169 6188 C2' U G 87 OK 6190 6186 6189 6208 C2' G G 88 OK 6210 6206 6209 6231 C2' C G 89 OK 6233 6229 6232 6251 C2' C G 90 OK 6253 6249 6252 6271 C2' U G 91 OK 6273 6269 6272 6291 C2' U G 92 OK 6293 6289 6292 6311 C2' C G 93 OK 6313 6309 6312 6331 C2' C G 94 OK 6333 6329 6332 6351 C2' G G 95 OK 6353 6349 6352 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 4483 C3' U G 8 OK 4481 4484 4485 4503 C3' G G 9 OK 4501 4504 4505 4526 C3' G G 10 OK 4524 4527 4528 4549 C3' U G 11 OK 4547 4550 4551 4569 C3' G G 12 OK 4567 4570 4571 4592 C3' C G 13 OK 4590 4593 4594 4612 C3' A G 14 OK 4610 4613 4614 4634 C3' G G 15 OK 4632 4635 4636 4657 C3' C G 16 OK 4655 4658 4659 4677 C3' G G 17 OK 4675 4678 4679 4700 C3' C G 18 OK 4698 4701 4702 4720 C3' A G 19 OK 4718 4721 4722 4742 C3' G G 20 OK 4740 4743 4744 4765 C3' C G 21 OK 4763 4766 4767 4785 C3' G G 22 OK 4783 4786 4787 4808 C3' C G 23 OK 4806 4809 4810 4828 C3' G G 24 OK 4826 4829 4830 4851 C3' G G 25 OK 4849 4852 4853 4874 C3' A G 26 OK 4872 4875 4876 4896 C3' C G 27 OK 4894 4897 4898 4916 C3' G G 28 OK 4914 4917 4918 4939 C3' C G 29 OK 4937 4940 4941 4959 C3' C G 30 OK 4957 4960 4961 4979 C3' C G 31 OK 4977 4980 4981 4999 C3' G G 32 OK 4997 5000 5001 5022 C3' A G 33 OK 5020 5023 5024 5044 C3' A G 34 OK 5042 5045 5046 5066 C3' C G 35 OK 5064 5067 5068 5086 C3' C G 36 OK 5084 5087 5088 5106 C3' U G 37 OK 5104 5107 5108 5126 C3' G G 38 OK 5124 5127 5128 5149 C3' G G 39 OK 5147 5150 5151 5172 C3' U G 40 OK 5170 5173 5174 5192 C3' C G 41 OK 5190 5193 5194 5212 C3' A G 42 OK 5210 5213 5214 5234 C3' G G 43 OK 5232 5235 5236 5257 C3' A G 44 OK 5255 5258 5259 5279 C3' G G 45 OK 5277 5280 5281 5302 C3' C G 46 OK 5300 5303 5304 5322 C3' C G 47 OK 5320 5323 5324 5342 C3' G G 48 OK 5340 5343 5344 5365 C3' G G 49 OK 5363 5366 5367 5388 C3' A G 50 OK 5386 5389 5390 5410 C3' A G 51 OK 5408 5411 5412 5432 C3' G G 52 OK 5430 5433 5434 5455 C3' G G 53 OK 5453 5456 5457 5478 C3' C G 54 OK 5476 5479 5480 5498 C3' A G 55 OK 5496 5499 5500 5520 C3' G G 56 OK 5518 5521 5522 5543 C3' C G 57 OK 5541 5544 5545 5563 C3' A G 58 OK 5561 5564 5565 5585 C3' G G 59 OK 5583 5586 5587 5608 C3' C G 60 OK 5606 5609 5610 5628 C3' C G 61 OK 5626 5629 5630 5648 C3' A G 62 OK 5646 5649 5650 5670 C3' U G 63 OK 5668 5671 5672 5690 C3' A G 64 OK 5688 5691 5692 5712 C3' A G 65 OK 5710 5713 5714 5734 C3' G G 66 OK 5732 5735 5736 5757 C3' G G 67 OK 5755 5758 5759 5780 C3' G G 68 OK 5778 5781 5782 5803 C3' A G 69 OK 5801 5804 5805 5825 C3' U G 70 OK 5823 5826 5827 5845 C3' G G 71 OK 5843 5846 5847 5868 C3' C G 72 OK 5866 5869 5870 5888 C3' U G 73 OK 5886 5889 5890 5908 C3' U G 74 OK 5906 5909 5910 5928 C3' U G 75 OK 5926 5929 5930 5948 C3' G G 76 OK 5946 5949 5950 5971 C3' C G 77 OK 5969 5972 5973 5991 C3' G G 78 OK 5989 5992 5993 6014 C3' G G 79 OK 6012 6015 6016 6037 C3' G G 80 OK 6035 6038 6039 6060 C3' U G 81 OK 6058 6061 6062 6080 C3' G G 82 OK 6078 6081 6082 6103 C3' C G 83 OK 6101 6104 6105 6123 C3' C G 84 OK 6121 6124 6125 6143 C3' G G 85 OK 6141 6144 6145 6166 C3' U G 86 OK 6164 6167 6168 6186 C3' U G 87 OK 6184 6187 6188 6206 C3' G G 88 OK 6204 6207 6208 6229 C3' C G 89 OK 6227 6230 6231 6249 C3' C G 90 OK 6247 6250 6251 6269 C3' U G 91 OK 6267 6270 6271 6289 C3' U G 92 OK 6287 6290 6291 6309 C3' C G 93 OK 6307 6310 6311 6329 C3' C G 94 OK 6327 6330 6331 6349 C3' G G 95 OK 6347 6350 6351 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 4481 C4' U G 8 OK 4483 4480 4482 4501 C4' G G 9 OK 4503 4500 4502 4524 C4' G G 10 OK 4526 4523 4525 4547 C4' U G 11 OK 4549 4546 4548 4567 C4' G G 12 OK 4569 4566 4568 4590 C4' C G 13 OK 4592 4589 4591 4610 C4' A G 14 OK 4612 4609 4611 4632 C4' G G 15 OK 4634 4631 4633 4655 C4' C G 16 OK 4657 4654 4656 4675 C4' G G 17 OK 4677 4674 4676 4698 C4' C G 18 OK 4700 4697 4699 4718 C4' A G 19 OK 4720 4717 4719 4740 C4' G G 20 OK 4742 4739 4741 4763 C4' C G 21 OK 4765 4762 4764 4783 C4' G G 22 OK 4785 4782 4784 4806 C4' C G 23 OK 4808 4805 4807 4826 C4' G G 24 OK 4828 4825 4827 4849 C4' G G 25 OK 4851 4848 4850 4872 C4' A G 26 OK 4874 4871 4873 4894 C4' C G 27 OK 4896 4893 4895 4914 C4' G G 28 OK 4916 4913 4915 4937 C4' C G 29 OK 4939 4936 4938 4957 C4' C G 30 OK 4959 4956 4958 4977 C4' C G 31 OK 4979 4976 4978 4997 C4' G G 32 OK 4999 4996 4998 5020 C4' A G 33 OK 5022 5019 5021 5042 C4' A G 34 OK 5044 5041 5043 5064 C4' C G 35 OK 5066 5063 5065 5084 C4' C G 36 OK 5086 5083 5085 5104 C4' U G 37 OK 5106 5103 5105 5124 C4' G G 38 OK 5126 5123 5125 5147 C4' G G 39 OK 5149 5146 5148 5170 C4' U G 40 OK 5172 5169 5171 5190 C4' C G 41 OK 5192 5189 5191 5210 C4' A G 42 OK 5212 5209 5211 5232 C4' G G 43 OK 5234 5231 5233 5255 C4' A G 44 OK 5257 5254 5256 5277 C4' G G 45 OK 5279 5276 5278 5300 C4' C G 46 OK 5302 5299 5301 5320 C4' C G 47 OK 5322 5319 5321 5340 C4' G G 48 OK 5342 5339 5341 5363 C4' G G 49 OK 5365 5362 5364 5386 C4' A G 50 OK 5388 5385 5387 5408 C4' A G 51 OK 5410 5407 5409 5430 C4' G G 52 OK 5432 5429 5431 5453 C4' G G 53 OK 5455 5452 5454 5476 C4' C G 54 OK 5478 5475 5477 5496 C4' A G 55 OK 5498 5495 5497 5518 C4' G G 56 OK 5520 5517 5519 5541 C4' C G 57 OK 5543 5540 5542 5561 C4' A G 58 OK 5563 5560 5562 5583 C4' G G 59 OK 5585 5582 5584 5606 C4' C G 60 OK 5608 5605 5607 5626 C4' C G 61 OK 5628 5625 5627 5646 C4' A G 62 OK 5648 5645 5647 5668 C4' U G 63 OK 5670 5667 5669 5688 C4' A G 64 OK 5690 5687 5689 5710 C4' A G 65 OK 5712 5709 5711 5732 C4' G G 66 OK 5734 5731 5733 5755 C4' G G 67 OK 5757 5754 5756 5778 C4' G G 68 OK 5780 5777 5779 5801 C4' A G 69 OK 5803 5800 5802 5823 C4' U G 70 OK 5825 5822 5824 5843 C4' G G 71 OK 5845 5842 5844 5866 C4' C G 72 OK 5868 5865 5867 5886 C4' U G 73 OK 5888 5885 5887 5906 C4' U G 74 OK 5908 5905 5907 5926 C4' U G 75 OK 5928 5925 5927 5946 C4' G G 76 OK 5948 5945 5947 5969 C4' C G 77 OK 5971 5968 5970 5989 C4' G G 78 OK 5991 5988 5990 6012 C4' G G 79 OK 6014 6011 6013 6035 C4' G G 80 OK 6037 6034 6036 6058 C4' U G 81 OK 6060 6057 6059 6078 C4' G G 82 OK 6080 6077 6079 6101 C4' C G 83 OK 6103 6100 6102 6121 C4' C G 84 OK 6123 6120 6122 6141 C4' G G 85 OK 6143 6140 6142 6164 C4' U G 86 OK 6166 6163 6165 6184 C4' U G 87 OK 6186 6183 6185 6204 C4' G G 88 OK 6206 6203 6205 6227 C4' C G 89 OK 6229 6226 6228 6247 C4' C G 90 OK 6249 6246 6248 6267 C4' U G 91 OK 6269 6266 6268 6287 C4' U G 92 OK 6289 6286 6288 6307 C4' C G 93 OK 6309 6306 6308 6327 C4' C G 94 OK 6329 6326 6328 6347 C4' G G 95 OK 6349 6346 6348 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 4480 C5' U G 8 4479 4481 4500 C5' G G 9 4499 4501 4523 C5' G G 10 4522 4524 4546 C5' U G 11 4545 4547 4566 C5' G G 12 4565 4567 4589 C5' C G 13 4588 4590 4609 C5' A G 14 4608 4610 4631 C5' G G 15 4630 4632 4654 C5' C G 16 4653 4655 4674 C5' G G 17 4673 4675 4697 C5' C G 18 4696 4698 4717 C5' A G 19 4716 4718 4739 C5' G G 20 4738 4740 4762 C5' C G 21 4761 4763 4782 C5' G G 22 4781 4783 4805 C5' C G 23 4804 4806 4825 C5' G G 24 4824 4826 4848 C5' G G 25 4847 4849 4871 C5' A G 26 4870 4872 4893 C5' C G 27 4892 4894 4913 C5' G G 28 4912 4914 4936 C5' C G 29 4935 4937 4956 C5' C G 30 4955 4957 4976 C5' C G 31 4975 4977 4996 C5' G G 32 4995 4997 5019 C5' A G 33 5018 5020 5041 C5' A G 34 5040 5042 5063 C5' C G 35 5062 5064 5083 C5' C G 36 5082 5084 5103 C5' U G 37 5102 5104 5123 C5' G G 38 5122 5124 5146 C5' G G 39 5145 5147 5169 C5' U G 40 5168 5170 5189 C5' C G 41 5188 5190 5209 C5' A G 42 5208 5210 5231 C5' G G 43 5230 5232 5254 C5' A G 44 5253 5255 5276 C5' G G 45 5275 5277 5299 C5' C G 46 5298 5300 5319 C5' C G 47 5318 5320 5339 C5' G G 48 5338 5340 5362 C5' G G 49 5361 5363 5385 C5' A G 50 5384 5386 5407 C5' A G 51 5406 5408 5429 C5' G G 52 5428 5430 5452 C5' G G 53 5451 5453 5475 C5' C G 54 5474 5476 5495 C5' A G 55 5494 5496 5517 C5' G G 56 5516 5518 5540 C5' C G 57 5539 5541 5560 C5' A G 58 5559 5561 5582 C5' G G 59 5581 5583 5605 C5' C G 60 5604 5606 5625 C5' C G 61 5624 5626 5645 C5' A G 62 5644 5646 5667 C5' U G 63 5666 5668 5687 C5' A G 64 5686 5688 5709 C5' A G 65 5708 5710 5731 C5' G G 66 5730 5732 5754 C5' G G 67 5753 5755 5777 C5' G G 68 5776 5778 5800 C5' A G 69 5799 5801 5822 C5' U G 70 5821 5823 5842 C5' G G 71 5841 5843 5865 C5' C G 72 5864 5866 5885 C5' U G 73 5884 5886 5905 C5' U G 74 5904 5906 5925 C5' U G 75 5924 5926 5945 C5' G G 76 5944 5946 5968 C5' C G 77 5967 5969 5988 C5' G G 78 5987 5989 6011 C5' G G 79 6010 6012 6034 C5' G G 80 6033 6035 6057 C5' U G 81 6056 6058 6077 C5' G G 82 6076 6078 6100 C5' C G 83 6099 6101 6120 C5' C G 84 6119 6121 6140 C5' G G 85 6139 6141 6163 C5' U G 86 6162 6164 6183 C5' U G 87 6182 6184 6203 C5' G G 88 6202 6204 6226 C5' C G 89 6225 6227 6246 C5' C G 90 6245 6247 6266 C5' U G 91 6265 6267 6286 C5' U G 92 6285 6287 6306 C5' C G 93 6305 6307 6326 C5' C G 94 6325 6327 6346 C5' G G 95 6345 6347 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 4496 P G G 9 distorted distorted 4484 4497 4498 4499 4519 P G G 10 distorted distorted 4504 4520 4521 4522 4542 P U G 11 distorted distorted 4527 4543 4544 4545 4562 P G G 12 distorted distorted 4550 4563 4564 4565 4585 P C G 13 distorted distorted 4570 4586 4587 4588 4605 P A G 14 distorted distorted 4593 4606 4607 4608 4627 P G G 15 distorted distorted 4613 4628 4629 4630 4650 P C G 16 distorted distorted 4635 4651 4652 4653 4670 P G G 17 distorted distorted 4658 4671 4672 4673 4693 P C G 18 distorted distorted 4678 4694 4695 4696 4713 P A G 19 distorted distorted 4701 4714 4715 4716 4735 P G G 20 distorted distorted 4721 4736 4737 4738 4758 P C G 21 distorted distorted 4743 4759 4760 4761 4778 P G G 22 distorted distorted 4766 4779 4780 4781 4801 P C G 23 distorted distorted 4786 4802 4803 4804 4821 P G G 24 distorted distorted 4809 4822 4823 4824 4844 P G G 25 distorted distorted 4829 4845 4846 4847 4867 P A G 26 distorted distorted 4852 4868 4869 4870 4889 P C G 27 distorted distorted 4875 4890 4891 4892 4909 P G G 28 distorted distorted 4897 4910 4911 4912 4932 P C G 29 distorted distorted 4917 4933 4934 4935 4952 P C G 30 distorted distorted 4940 4953 4954 4955 4972 P C G 31 distorted distorted 4960 4973 4974 4975 4992 P G G 32 distorted distorted 4980 4993 4994 4995 5015 P A G 33 distorted distorted 5000 5016 5017 5018 5037 P A G 34 distorted distorted 5023 5038 5039 5040 5059 P C G 35 distorted distorted 5045 5060 5061 5062 5079 P C G 36 distorted distorted 5067 5080 5081 5082 5099 P U G 37 distorted distorted 5087 5100 5101 5102 5119 P G G 38 distorted distorted 5107 5120 5121 5122 5142 P G G 39 distorted distorted 5127 5143 5144 5145 5165 P U G 40 distorted distorted 5150 5166 5167 5168 5185 P C G 41 distorted distorted 5173 5186 5187 5188 5205 P A G 42 distorted distorted 5193 5206 5207 5208 5227 P G G 43 distorted distorted 5213 5228 5229 5230 5250 P A G 44 distorted distorted 5235 5251 5252 5253 5272 P G G 45 distorted distorted 5258 5273 5274 5275 5295 P C G 46 distorted distorted 5280 5296 5297 5298 5315 P C G 47 distorted distorted 5303 5316 5317 5318 5335 P G G 48 distorted distorted 5323 5336 5337 5338 5358 P G G 49 distorted distorted 5343 5359 5360 5361 5381 P A G 50 distorted distorted 5366 5382 5383 5384 5403 P A G 51 distorted distorted 5389 5404 5405 5406 5425 P G G 52 distorted distorted 5411 5426 5427 5428 5448 P G G 53 distorted distorted 5433 5449 5450 5451 5471 P C G 54 distorted distorted 5456 5472 5473 5474 5491 P A G 55 distorted distorted 5479 5492 5493 5494 5513 P G G 56 distorted distorted 5499 5514 5515 5516 5536 P C G 57 distorted distorted 5521 5537 5538 5539 5556 P A G 58 distorted distorted 5544 5557 5558 5559 5578 P G G 59 distorted distorted 5564 5579 5580 5581 5601 P C G 60 distorted distorted 5586 5602 5603 5604 5621 P C G 61 distorted distorted 5609 5622 5623 5624 5641 P A G 62 distorted distorted 5629 5642 5643 5644 5663 P U G 63 distorted distorted 5649 5664 5665 5666 5683 P A G 64 distorted distorted 5671 5684 5685 5686 5705 P A G 65 distorted distorted 5691 5706 5707 5708 5727 P G G 66 distorted distorted 5713 5728 5729 5730 5750 P G G 67 distorted distorted 5735 5751 5752 5753 5773 P G G 68 distorted distorted 5758 5774 5775 5776 5796 P A G 69 distorted distorted 5781 5797 5798 5799 5818 P U G 70 distorted distorted 5804 5819 5820 5821 5838 P G G 71 distorted distorted 5826 5839 5840 5841 5861 P C G 72 distorted distorted 5846 5862 5863 5864 5881 P U G 73 distorted distorted 5869 5882 5883 5884 5901 P U G 74 distorted distorted 5889 5902 5903 5904 5921 P U G 75 distorted distorted 5909 5922 5923 5924 5941 P G G 76 distorted distorted 5929 5942 5943 5944 5964 P C G 77 distorted distorted 5949 5965 5966 5967 5984 P G G 78 distorted distorted 5972 5985 5986 5987 6007 P G G 79 distorted distorted 5992 6008 6009 6010 6030 P G G 80 distorted distorted 6015 6031 6032 6033 6053 P U G 81 distorted distorted 6038 6054 6055 6056 6073 P G G 82 distorted distorted 6061 6074 6075 6076 6096 P C G 83 distorted distorted 6081 6097 6098 6099 6116 P C G 84 distorted distorted 6104 6117 6118 6119 6136 P G G 85 distorted distorted 6124 6137 6138 6139 6159 P U G 86 distorted distorted 6144 6160 6161 6162 6179 P U G 87 distorted distorted 6167 6180 6181 6182 6199 P G G 88 distorted distorted 6187 6200 6201 6202 6222 P C G 89 distorted distorted 6207 6223 6224 6225 6242 P C G 90 distorted distorted 6230 6243 6244 6245 6262 P U G 91 distorted distorted 6250 6263 6264 6265 6282 P U G 92 distorted distorted 6270 6283 6284 6285 6302 P C G 93 distorted distorted 6290 6303 6304 6305 6322 P C G 94 distorted distorted 6310 6323 6324 6325 6342 P G G 95 distorted distorted 6330 6343 6344 6345 ---------------------------------------------------------------------------------