ID code: '3W3S' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 4377 C1' G B 1 beta 4372 4378 4375 4400 C1' G B 2 beta 4395 4401 4398 4423 C1' G B 3 beta 4418 4424 4421 4446 C1' A B 4 beta 4441 4447 4444 4468 C1' G B 5 beta 4463 4469 4466 4491 C1' A B 5 beta 4486 4492 4489 4513 C1' G B 6 beta 4508 4514 4511 4536 C1' G B 7 beta 4531 4537 4534 4559 C1' U B 8 beta 4554 4560 4557 4579 C1' U B 9 beta 4574 4580 4577 4599 C1' G B 10 beta 4594 4600 4597 4622 C1' G B 11 beta 4617 4623 4620 4645 C1' C B 11 beta 4640 4646 4643 4665 C1' C B 12 beta 4660 4666 4663 4685 C1' G B 13 beta 4680 4686 4683 4708 C1' G B 14 beta 4703 4709 4706 4731 C1' C B 15 beta 4726 4732 4729 4751 C1' U B 16 beta 4746 4752 4749 4771 C1' G B 18 beta 4766 4772 4769 4794 C1' G B 19 beta 4789 4795 4792 4817 C1' U B 20 beta 4812 4818 4815 4837 C1' G B 20 beta 4832 4838 4835 4860 C1' C B 21 beta 4855 4861 4858 4880 C1' C B 22 beta 4875 4881 4878 4900 C1' G B 23 beta 4895 4901 4898 4923 C1' C B 24 beta 4918 4924 4921 4943 C1' C B 25 beta 4938 4944 4941 4963 C1' C B 26 beta 4958 4964 4961 4983 C1' C B 27 beta 4978 4984 4981 5003 C1' G B 28 beta 4998 5004 5001 5026 C1' G B 29 beta 5021 5027 5024 5049 C1' G B 30 beta 5044 5050 5047 5072 C1' A B 31 beta 5067 5073 5070 5094 C1' C B 32 beta 5089 5095 5092 5114 C1' U B 33 beta 5109 5115 5112 5134 C1' U B 34 beta 5129 5135 5132 5154 C1' C B 35 beta 5149 5155 5152 5174 C1' A B 36 beta 5169 5175 5172 5196 C1' A B 37 beta 5191 5197 5194 5218 C1' A B 38 beta 5213 5219 5216 5240 C1' U B 39 beta 5235 5241 5238 5260 C1' C B 40 beta 5255 5261 5258 5280 C1' C B 41 beta 5275 5281 5278 5300 C1' C B 42 beta 5295 5301 5298 5320 C1' G B 43 beta 5315 5321 5318 5343 C1' U B 43 beta 5338 5344 5341 5363 C1' G B 44 beta 5358 5364 5361 5386 C1' G B 45 beta 5381 5387 5384 5409 C1' G B 46 beta 5404 5410 5407 5432 C1' A B 47 beta 5427 5433 5430 5454 C1' G B 47 beta 5449 5455 5452 5477 C1' G B 47 beta 5472 5478 5475 5500 C1' U B 47 beta 5495 5501 5498 5520 C1' C B 47 beta 5515 5521 5518 5540 C1' C B 47 beta 5535 5541 5538 5560 C1' C B 47 beta 5555 5561 5558 5580 C1' G B 47 beta 5575 5581 5578 5603 C1' C B 47 beta 5598 5604 5601 5623 C1' A B 47 beta 5618 5624 5621 5645 C1' A B 47 beta 5640 5646 5643 5667 C1' G B 47 beta 5662 5668 5665 5690 C1' G B 47 beta 5685 5691 5688 5713 C1' G B 47 beta 5708 5714 5711 5736 C1' A B 47 beta 5731 5737 5734 5758 C1' G B 47 beta 5753 5759 5756 5781 C1' C B 47 beta 5776 5782 5779 5801 C1' U B 47 beta 5796 5802 5799 5821 C1' C B 47 beta 5816 5822 5819 5841 C1' C B 47 beta 5836 5842 5839 5861 C1' G B 48 beta 5856 5862 5859 5884 C1' G B 49 beta 5879 5885 5882 5907 C1' A B 50 beta 5902 5908 5905 5929 C1' G B 51 beta 5924 5930 5927 5952 C1' G B 52 beta 5947 5953 5950 5975 C1' G B 53 beta 5970 5976 5973 5998 C1' U B 54 beta 5993 5999 5996 6018 C1' U B 55 beta 6013 6019 6016 6038 C1' C B 56 beta 6033 6039 6036 6058 C1' G B 57 beta 6053 6059 6056 6081 C1' A B 58 beta 6076 6082 6079 6103 C1' U B 59 beta 6098 6104 6101 6123 C1' U B 60 beta 6118 6124 6121 6143 C1' C B 61 beta 6138 6144 6141 6163 C1' C B 62 beta 6158 6164 6161 6183 C1' C B 63 beta 6178 6184 6181 6203 C1' U B 64 beta 6198 6204 6201 6223 C1' C B 65 beta 6218 6224 6221 6243 C1' C B 66 beta 6238 6244 6241 6263 C1' C B 67 beta 6258 6264 6261 6283 C1' U B 67 beta 6278 6284 6281 6303 C1' C B 68 beta 6298 6304 6301 6323 C1' U B 69 beta 6318 6324 6321 6343 C1' C B 70 beta 6338 6344 6341 6363 C1' C B 71 beta 6358 6364 6361 6383 C1' C B 72 beta 6378 6384 6381 6403 C1' G B 73 beta 6398 6404 6401 6426 C1' C B 74 beta 6421 6427 6424 6446 C1' C B 75 beta 6441 6447 6444 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 4375 C2' G B 1 OK 4377 4373 4376 4398 C2' G B 2 OK 4400 4396 4399 4421 C2' G B 3 OK 4423 4419 4422 4444 C2' A B 4 OK 4446 4442 4445 4466 C2' G B 5 OK 4468 4464 4467 4489 C2' A B 5 OK 4491 4487 4490 4511 C2' G B 6 OK 4513 4509 4512 4534 C2' G B 7 OK 4536 4532 4535 4557 C2' U B 8 OK 4559 4555 4558 4577 C2' U B 9 OK 4579 4575 4578 4597 C2' G B 10 OK 4599 4595 4598 4620 C2' G B 11 OK 4622 4618 4621 4643 C2' C B 11 OK 4645 4641 4644 4663 C2' C B 12 OK 4665 4661 4664 4683 C2' G B 13 OK 4685 4681 4684 4706 C2' G B 14 OK 4708 4704 4707 4729 C2' C B 15 OK 4731 4727 4730 4749 C2' U B 16 OK 4751 4747 4750 4769 C2' G B 18 OK 4771 4767 4770 4792 C2' G B 19 OK 4794 4790 4793 4815 C2' U B 20 OK 4817 4813 4816 4835 C2' G B 20 OK 4837 4833 4836 4858 C2' C B 21 OK 4860 4856 4859 4878 C2' C B 22 OK 4880 4876 4879 4898 C2' G B 23 OK 4900 4896 4899 4921 C2' C B 24 OK 4923 4919 4922 4941 C2' C B 25 OK 4943 4939 4942 4961 C2' C B 26 OK 4963 4959 4962 4981 C2' C B 27 OK 4983 4979 4982 5001 C2' G B 28 OK 5003 4999 5002 5024 C2' G B 29 OK 5026 5022 5025 5047 C2' G B 30 OK 5049 5045 5048 5070 C2' A B 31 OK 5072 5068 5071 5092 C2' C B 32 OK 5094 5090 5093 5112 C2' U B 33 OK 5114 5110 5113 5132 C2' U B 34 OK 5134 5130 5133 5152 C2' C B 35 OK 5154 5150 5153 5172 C2' A B 36 OK 5174 5170 5173 5194 C2' A B 37 OK 5196 5192 5195 5216 C2' A B 38 OK 5218 5214 5217 5238 C2' U B 39 OK 5240 5236 5239 5258 C2' C B 40 OK 5260 5256 5259 5278 C2' C B 41 OK 5280 5276 5279 5298 C2' C B 42 OK 5300 5296 5299 5318 C2' G B 43 OK 5320 5316 5319 5341 C2' U B 43 OK 5343 5339 5342 5361 C2' G B 44 OK 5363 5359 5362 5384 C2' G B 45 OK 5386 5382 5385 5407 C2' G B 46 OK 5409 5405 5408 5430 C2' A B 47 OK 5432 5428 5431 5452 C2' G B 47 OK 5454 5450 5453 5475 C2' G B 47 OK 5477 5473 5476 5498 C2' U B 47 OK 5500 5496 5499 5518 C2' C B 47 OK 5520 5516 5519 5538 C2' C B 47 OK 5540 5536 5539 5558 C2' C B 47 OK 5560 5556 5559 5578 C2' G B 47 OK 5580 5576 5579 5601 C2' C B 47 OK 5603 5599 5602 5621 C2' A B 47 OK 5623 5619 5622 5643 C2' A B 47 OK 5645 5641 5644 5665 C2' G B 47 OK 5667 5663 5666 5688 C2' G B 47 OK 5690 5686 5689 5711 C2' G B 47 OK 5713 5709 5712 5734 C2' A B 47 OK 5736 5732 5735 5756 C2' G B 47 OK 5758 5754 5757 5779 C2' C B 47 OK 5781 5777 5780 5799 C2' U B 47 OK 5801 5797 5800 5819 C2' C B 47 OK 5821 5817 5820 5839 C2' C B 47 OK 5841 5837 5840 5859 C2' G B 48 OK 5861 5857 5860 5882 C2' G B 49 OK 5884 5880 5883 5905 C2' A B 50 OK 5907 5903 5906 5927 C2' G B 51 OK 5929 5925 5928 5950 C2' G B 52 OK 5952 5948 5951 5973 C2' G B 53 OK 5975 5971 5974 5996 C2' U B 54 OK 5998 5994 5997 6016 C2' U B 55 OK 6018 6014 6017 6036 C2' C B 56 OK 6038 6034 6037 6056 C2' G B 57 OK 6058 6054 6057 6079 C2' A B 58 OK 6081 6077 6080 6101 C2' U B 59 OK 6103 6099 6102 6121 C2' U B 60 OK 6123 6119 6122 6141 C2' C B 61 OK 6143 6139 6142 6161 C2' C B 62 OK 6163 6159 6162 6181 C2' C B 63 OK 6183 6179 6182 6201 C2' U B 64 OK 6203 6199 6202 6221 C2' C B 65 OK 6223 6219 6222 6241 C2' C B 66 OK 6243 6239 6242 6261 C2' C B 67 OK 6263 6259 6262 6281 C2' U B 67 OK 6283 6279 6282 6301 C2' C B 68 OK 6303 6299 6302 6321 C2' U B 69 OK 6323 6319 6322 6341 C2' C B 70 OK 6343 6339 6342 6361 C2' C B 71 OK 6363 6359 6362 6381 C2' C B 72 OK 6383 6379 6382 6401 C2' G B 73 OK 6403 6399 6402 6424 C2' C B 74 OK 6426 6422 6425 6444 C2' C B 75 OK 6446 6442 6445 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 4373 C3' G B 1 OK 4371 4374 4375 4396 C3' G B 2 OK 4394 4397 4398 4419 C3' G B 3 OK 4417 4420 4421 4442 C3' A B 4 OK 4440 4443 4444 4464 C3' G B 5 OK 4462 4465 4466 4487 C3' A B 5 OK 4485 4488 4489 4509 C3' G B 6 OK 4507 4510 4511 4532 C3' G B 7 OK 4530 4533 4534 4555 C3' U B 8 OK 4553 4556 4557 4575 C3' U B 9 OK 4573 4576 4577 4595 C3' G B 10 OK 4593 4596 4597 4618 C3' G B 11 OK 4616 4619 4620 4641 C3' C B 11 OK 4639 4642 4643 4661 C3' C B 12 OK 4659 4662 4663 4681 C3' G B 13 OK 4679 4682 4683 4704 C3' G B 14 OK 4702 4705 4706 4727 C3' C B 15 OK 4725 4728 4729 4747 C3' U B 16 OK 4745 4748 4749 4767 C3' G B 18 OK 4765 4768 4769 4790 C3' G B 19 OK 4788 4791 4792 4813 C3' U B 20 OK 4811 4814 4815 4833 C3' G B 20 OK 4831 4834 4835 4856 C3' C B 21 OK 4854 4857 4858 4876 C3' C B 22 OK 4874 4877 4878 4896 C3' G B 23 OK 4894 4897 4898 4919 C3' C B 24 OK 4917 4920 4921 4939 C3' C B 25 OK 4937 4940 4941 4959 C3' C B 26 OK 4957 4960 4961 4979 C3' C B 27 OK 4977 4980 4981 4999 C3' G B 28 OK 4997 5000 5001 5022 C3' G B 29 OK 5020 5023 5024 5045 C3' G B 30 OK 5043 5046 5047 5068 C3' A B 31 OK 5066 5069 5070 5090 C3' C B 32 OK 5088 5091 5092 5110 C3' U B 33 OK 5108 5111 5112 5130 C3' U B 34 OK 5128 5131 5132 5150 C3' C B 35 OK 5148 5151 5152 5170 C3' A B 36 OK 5168 5171 5172 5192 C3' A B 37 OK 5190 5193 5194 5214 C3' A B 38 OK 5212 5215 5216 5236 C3' U B 39 OK 5234 5237 5238 5256 C3' C B 40 OK 5254 5257 5258 5276 C3' C B 41 OK 5274 5277 5278 5296 C3' C B 42 OK 5294 5297 5298 5316 C3' G B 43 OK 5314 5317 5318 5339 C3' U B 43 OK 5337 5340 5341 5359 C3' G B 44 OK 5357 5360 5361 5382 C3' G B 45 OK 5380 5383 5384 5405 C3' G B 46 OK 5403 5406 5407 5428 C3' A B 47 OK 5426 5429 5430 5450 C3' G B 47 OK 5448 5451 5452 5473 C3' G B 47 OK 5471 5474 5475 5496 C3' U B 47 OK 5494 5497 5498 5516 C3' C B 47 OK 5514 5517 5518 5536 C3' C B 47 OK 5534 5537 5538 5556 C3' C B 47 OK 5554 5557 5558 5576 C3' G B 47 OK 5574 5577 5578 5599 C3' C B 47 OK 5597 5600 5601 5619 C3' A B 47 OK 5617 5620 5621 5641 C3' A B 47 OK 5639 5642 5643 5663 C3' G B 47 OK 5661 5664 5665 5686 C3' G B 47 OK 5684 5687 5688 5709 C3' G B 47 OK 5707 5710 5711 5732 C3' A B 47 OK 5730 5733 5734 5754 C3' G B 47 OK 5752 5755 5756 5777 C3' C B 47 OK 5775 5778 5779 5797 C3' U B 47 OK 5795 5798 5799 5817 C3' C B 47 OK 5815 5818 5819 5837 C3' C B 47 OK 5835 5838 5839 5857 C3' G B 48 OK 5855 5858 5859 5880 C3' G B 49 OK 5878 5881 5882 5903 C3' A B 50 OK 5901 5904 5905 5925 C3' G B 51 OK 5923 5926 5927 5948 C3' G B 52 OK 5946 5949 5950 5971 C3' G B 53 OK 5969 5972 5973 5994 C3' U B 54 OK 5992 5995 5996 6014 C3' U B 55 OK 6012 6015 6016 6034 C3' C B 56 OK 6032 6035 6036 6054 C3' G B 57 OK 6052 6055 6056 6077 C3' A B 58 OK 6075 6078 6079 6099 C3' U B 59 OK 6097 6100 6101 6119 C3' U B 60 OK 6117 6120 6121 6139 C3' C B 61 OK 6137 6140 6141 6159 C3' C B 62 OK 6157 6160 6161 6179 C3' C B 63 OK 6177 6180 6181 6199 C3' U B 64 OK 6197 6200 6201 6219 C3' C B 65 OK 6217 6220 6221 6239 C3' C B 66 OK 6237 6240 6241 6259 C3' C B 67 OK 6257 6260 6261 6279 C3' U B 67 OK 6277 6280 6281 6299 C3' C B 68 OK 6297 6300 6301 6319 C3' U B 69 OK 6317 6320 6321 6339 C3' C B 70 OK 6337 6340 6341 6359 C3' C B 71 OK 6357 6360 6361 6379 C3' C B 72 OK 6377 6380 6381 6399 C3' G B 73 OK 6397 6400 6401 6422 C3' C B 74 OK 6420 6423 6424 6442 C3' C B 75 OK 6440 6443 6444 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 4371 C4' G B 1 OK 4373 4370 4372 4394 C4' G B 2 OK 4396 4393 4395 4417 C4' G B 3 OK 4419 4416 4418 4440 C4' A B 4 OK 4442 4439 4441 4462 C4' G B 5 OK 4464 4461 4463 4485 C4' A B 5 OK 4487 4484 4486 4507 C4' G B 6 OK 4509 4506 4508 4530 C4' G B 7 OK 4532 4529 4531 4553 C4' U B 8 OK 4555 4552 4554 4573 C4' U B 9 OK 4575 4572 4574 4593 C4' G B 10 OK 4595 4592 4594 4616 C4' G B 11 OK 4618 4615 4617 4639 C4' C B 11 OK 4641 4638 4640 4659 C4' C B 12 OK 4661 4658 4660 4679 C4' G B 13 OK 4681 4678 4680 4702 C4' G B 14 OK 4704 4701 4703 4725 C4' C B 15 OK 4727 4724 4726 4745 C4' U B 16 OK 4747 4744 4746 4765 C4' G B 18 OK 4767 4764 4766 4788 C4' G B 19 OK 4790 4787 4789 4811 C4' U B 20 OK 4813 4810 4812 4831 C4' G B 20 OK 4833 4830 4832 4854 C4' C B 21 OK 4856 4853 4855 4874 C4' C B 22 OK 4876 4873 4875 4894 C4' G B 23 OK 4896 4893 4895 4917 C4' C B 24 OK 4919 4916 4918 4937 C4' C B 25 OK 4939 4936 4938 4957 C4' C B 26 OK 4959 4956 4958 4977 C4' C B 27 OK 4979 4976 4978 4997 C4' G B 28 OK 4999 4996 4998 5020 C4' G B 29 OK 5022 5019 5021 5043 C4' G B 30 OK 5045 5042 5044 5066 C4' A B 31 OK 5068 5065 5067 5088 C4' C B 32 OK 5090 5087 5089 5108 C4' U B 33 OK 5110 5107 5109 5128 C4' U B 34 OK 5130 5127 5129 5148 C4' C B 35 OK 5150 5147 5149 5168 C4' A B 36 OK 5170 5167 5169 5190 C4' A B 37 OK 5192 5189 5191 5212 C4' A B 38 OK 5214 5211 5213 5234 C4' U B 39 OK 5236 5233 5235 5254 C4' C B 40 OK 5256 5253 5255 5274 C4' C B 41 OK 5276 5273 5275 5294 C4' C B 42 OK 5296 5293 5295 5314 C4' G B 43 OK 5316 5313 5315 5337 C4' U B 43 OK 5339 5336 5338 5357 C4' G B 44 OK 5359 5356 5358 5380 C4' G B 45 OK 5382 5379 5381 5403 C4' G B 46 OK 5405 5402 5404 5426 C4' A B 47 OK 5428 5425 5427 5448 C4' G B 47 OK 5450 5447 5449 5471 C4' G B 47 OK 5473 5470 5472 5494 C4' U B 47 OK 5496 5493 5495 5514 C4' C B 47 OK 5516 5513 5515 5534 C4' C B 47 OK 5536 5533 5535 5554 C4' C B 47 OK 5556 5553 5555 5574 C4' G B 47 OK 5576 5573 5575 5597 C4' C B 47 OK 5599 5596 5598 5617 C4' A B 47 OK 5619 5616 5618 5639 C4' A B 47 OK 5641 5638 5640 5661 C4' G B 47 OK 5663 5660 5662 5684 C4' G B 47 OK 5686 5683 5685 5707 C4' G B 47 OK 5709 5706 5708 5730 C4' A B 47 OK 5732 5729 5731 5752 C4' G B 47 OK 5754 5751 5753 5775 C4' C B 47 OK 5777 5774 5776 5795 C4' U B 47 OK 5797 5794 5796 5815 C4' C B 47 OK 5817 5814 5816 5835 C4' C B 47 OK 5837 5834 5836 5855 C4' G B 48 OK 5857 5854 5856 5878 C4' G B 49 OK 5880 5877 5879 5901 C4' A B 50 OK 5903 5900 5902 5923 C4' G B 51 OK 5925 5922 5924 5946 C4' G B 52 OK 5948 5945 5947 5969 C4' G B 53 OK 5971 5968 5970 5992 C4' U B 54 OK 5994 5991 5993 6012 C4' U B 55 OK 6014 6011 6013 6032 C4' C B 56 OK 6034 6031 6033 6052 C4' G B 57 OK 6054 6051 6053 6075 C4' A B 58 OK 6077 6074 6076 6097 C4' U B 59 OK 6099 6096 6098 6117 C4' U B 60 OK 6119 6116 6118 6137 C4' C B 61 OK 6139 6136 6138 6157 C4' C B 62 OK 6159 6156 6158 6177 C4' C B 63 OK 6179 6176 6178 6197 C4' U B 64 OK 6199 6196 6198 6217 C4' C B 65 OK 6219 6216 6218 6237 C4' C B 66 OK 6239 6236 6238 6257 C4' C B 67 OK 6259 6256 6258 6277 C4' U B 67 OK 6279 6276 6278 6297 C4' C B 68 OK 6299 6296 6298 6317 C4' U B 69 OK 6319 6316 6318 6337 C4' C B 70 OK 6339 6336 6338 6357 C4' C B 71 OK 6359 6356 6358 6377 C4' C B 72 OK 6379 6376 6378 6397 C4' G B 73 OK 6399 6396 6398 6420 C4' C B 74 OK 6422 6419 6421 6440 C4' C B 75 OK 6442 6439 6441 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 4370 C5' G B 1 4369 4371 4393 C5' G B 2 4392 4394 4416 C5' G B 3 4415 4417 4439 C5' A B 4 4438 4440 4461 C5' G B 5 4460 4462 4484 C5' A B 5 4483 4485 4506 C5' G B 6 4505 4507 4529 C5' G B 7 4528 4530 4552 C5' U B 8 4551 4553 4572 C5' U B 9 4571 4573 4592 C5' G B 10 4591 4593 4615 C5' G B 11 4614 4616 4638 C5' C B 11 4637 4639 4658 C5' C B 12 4657 4659 4678 C5' G B 13 4677 4679 4701 C5' G B 14 4700 4702 4724 C5' C B 15 4723 4725 4744 C5' U B 16 4743 4745 4764 C5' G B 18 4763 4765 4787 C5' G B 19 4786 4788 4810 C5' U B 20 4809 4811 4830 C5' G B 20 4829 4831 4853 C5' C B 21 4852 4854 4873 C5' C B 22 4872 4874 4893 C5' G B 23 4892 4894 4916 C5' C B 24 4915 4917 4936 C5' C B 25 4935 4937 4956 C5' C B 26 4955 4957 4976 C5' C B 27 4975 4977 4996 C5' G B 28 4995 4997 5019 C5' G B 29 5018 5020 5042 C5' G B 30 5041 5043 5065 C5' A B 31 5064 5066 5087 C5' C B 32 5086 5088 5107 C5' U B 33 5106 5108 5127 C5' U B 34 5126 5128 5147 C5' C B 35 5146 5148 5167 C5' A B 36 5166 5168 5189 C5' A B 37 5188 5190 5211 C5' A B 38 5210 5212 5233 C5' U B 39 5232 5234 5253 C5' C B 40 5252 5254 5273 C5' C B 41 5272 5274 5293 C5' C B 42 5292 5294 5313 C5' G B 43 5312 5314 5336 C5' U B 43 5335 5337 5356 C5' G B 44 5355 5357 5379 C5' G B 45 5378 5380 5402 C5' G B 46 5401 5403 5425 C5' A B 47 5424 5426 5447 C5' G B 47 5446 5448 5470 C5' G B 47 5469 5471 5493 C5' U B 47 5492 5494 5513 C5' C B 47 5512 5514 5533 C5' C B 47 5532 5534 5553 C5' C B 47 5552 5554 5573 C5' G B 47 5572 5574 5596 C5' C B 47 5595 5597 5616 C5' A B 47 5615 5617 5638 C5' A B 47 5637 5639 5660 C5' G B 47 5659 5661 5683 C5' G B 47 5682 5684 5706 C5' G B 47 5705 5707 5729 C5' A B 47 5728 5730 5751 C5' G B 47 5750 5752 5774 C5' C B 47 5773 5775 5794 C5' U B 47 5793 5795 5814 C5' C B 47 5813 5815 5834 C5' C B 47 5833 5835 5854 C5' G B 48 5853 5855 5877 C5' G B 49 5876 5878 5900 C5' A B 50 5899 5901 5922 C5' G B 51 5921 5923 5945 C5' G B 52 5944 5946 5968 C5' G B 53 5967 5969 5991 C5' U B 54 5990 5992 6011 C5' U B 55 6010 6012 6031 C5' C B 56 6030 6032 6051 C5' G B 57 6050 6052 6074 C5' A B 58 6073 6075 6096 C5' U B 59 6095 6097 6116 C5' U B 60 6115 6117 6136 C5' C B 61 6135 6137 6156 C5' C B 62 6155 6157 6176 C5' C B 63 6175 6177 6196 C5' U B 64 6195 6197 6216 C5' C B 65 6215 6217 6236 C5' C B 66 6235 6237 6256 C5' C B 67 6255 6257 6276 C5' U B 67 6275 6277 6296 C5' C B 68 6295 6297 6316 C5' U B 69 6315 6317 6336 C5' C B 70 6335 6337 6356 C5' C B 71 6355 6357 6376 C5' C B 72 6375 6377 6396 C5' G B 73 6395 6397 6419 C5' C B 74 6418 6420 6439 C5' C B 75 6438 6440 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 4366 P G B 1 distorted distorted 4367 4368 4369 4389 P G B 2 distorted distorted 4374 4390 4391 4392 4412 P G B 3 distorted distorted 4397 4413 4414 4415 4435 P A B 4 distorted distorted 4420 4436 4437 4438 4457 P G B 5 distorted distorted 4443 4458 4459 4460 4480 P A B 5 distorted distorted 4465 4481 4482 4483 4502 P G B 6 distorted distorted 4488 4503 4504 4505 4525 P G B 7 distorted distorted 4510 4526 4527 4528 4548 P U B 8 distorted distorted 4533 4549 4550 4551 4568 P U B 9 distorted distorted 4556 4569 4570 4571 4588 P G B 10 distorted distorted 4576 4589 4590 4591 4611 P G B 11 distorted distorted 4596 4612 4613 4614 4634 P C B 11 distorted distorted 4619 4635 4636 4637 4654 P C B 12 distorted distorted 4642 4655 4656 4657 4674 P G B 13 distorted distorted 4662 4675 4676 4677 4697 P G B 14 distorted distorted 4682 4698 4699 4700 4720 P C B 15 distorted distorted 4705 4721 4722 4723 4740 P U B 16 distorted distorted 4728 4741 4742 4743 4760 P G B 18 distorted distorted 4748 4761 4762 4763 4783 P G B 19 distorted distorted 4768 4784 4785 4786 4806 P U B 20 distorted distorted 4791 4807 4808 4809 4826 P G B 20 distorted distorted 4814 4827 4828 4829 4849 P C B 21 distorted distorted 4834 4850 4851 4852 4869 P C B 22 distorted distorted 4857 4870 4871 4872 4889 P G B 23 distorted distorted 4877 4890 4891 4892 4912 P C B 24 distorted distorted 4897 4913 4914 4915 4932 P C B 25 distorted distorted 4920 4933 4934 4935 4952 P C B 26 distorted distorted 4940 4953 4954 4955 4972 P C B 27 distorted distorted 4960 4973 4974 4975 4992 P G B 28 distorted distorted 4980 4993 4994 4995 5015 P G B 29 distorted distorted 5000 5016 5017 5018 5038 P G B 30 distorted distorted 5023 5039 5040 5041 5061 P A B 31 distorted distorted 5046 5062 5063 5064 5083 P C B 32 distorted distorted 5069 5084 5085 5086 5103 P U B 33 distorted distorted 5091 5104 5105 5106 5123 P U B 34 distorted distorted 5111 5124 5125 5126 5143 P C B 35 distorted distorted 5131 5144 5145 5146 5163 P A B 36 distorted distorted 5151 5164 5165 5166 5185 P A B 37 distorted distorted 5171 5186 5187 5188 5207 P A B 38 distorted distorted 5193 5208 5209 5210 5229 P U B 39 distorted distorted 5215 5230 5231 5232 5249 P C B 40 distorted distorted 5237 5250 5251 5252 5269 P C B 41 distorted distorted 5257 5270 5271 5272 5289 P C B 42 distorted distorted 5277 5290 5291 5292 5309 P G B 43 distorted distorted 5297 5310 5311 5312 5332 P U B 43 distorted distorted 5317 5333 5334 5335 5352 P G B 44 distorted distorted 5340 5353 5354 5355 5375 P G B 45 distorted distorted 5360 5376 5377 5378 5398 P G B 46 distorted distorted 5383 5399 5400 5401 5421 P A B 47 distorted distorted 5406 5422 5423 5424 5443 P G B 47 distorted distorted 5429 5444 5445 5446 5466 P G B 47 distorted distorted 5451 5467 5468 5469 5489 P U B 47 distorted distorted 5474 5490 5491 5492 5509 P C B 47 distorted distorted 5497 5510 5511 5512 5529 P C B 47 distorted distorted 5517 5530 5531 5532 5549 P C B 47 distorted distorted 5537 5550 5551 5552 5569 P G B 47 distorted distorted 5557 5570 5571 5572 5592 P C B 47 distorted distorted 5577 5593 5594 5595 5612 P A B 47 distorted distorted 5600 5613 5614 5615 5634 P A B 47 distorted distorted 5620 5635 5636 5637 5656 P G B 47 distorted distorted 5642 5657 5658 5659 5679 P G B 47 distorted distorted 5664 5680 5681 5682 5702 P G B 47 distorted distorted 5687 5703 5704 5705 5725 P A B 47 distorted distorted 5710 5726 5727 5728 5747 P G B 47 distorted distorted 5733 5748 5749 5750 5770 P C B 47 distorted distorted 5755 5771 5772 5773 5790 P U B 47 distorted distorted 5778 5791 5792 5793 5810 P C B 47 distorted distorted 5798 5811 5812 5813 5830 P C B 47 distorted distorted 5818 5831 5832 5833 5850 P G B 48 distorted distorted 5838 5851 5852 5853 5873 P G B 49 distorted distorted 5858 5874 5875 5876 5896 P A B 50 distorted distorted 5881 5897 5898 5899 5918 P G B 51 distorted distorted 5904 5919 5920 5921 5941 P G B 52 distorted distorted 5926 5942 5943 5944 5964 P G B 53 distorted distorted 5949 5965 5966 5967 5987 P U B 54 distorted distorted 5972 5988 5989 5990 6007 P U B 55 distorted distorted 5995 6008 6009 6010 6027 P C B 56 distorted distorted 6015 6028 6029 6030 6047 P G B 57 distorted distorted 6035 6048 6049 6050 6070 P A B 58 distorted distorted 6055 6071 6072 6073 6092 P U B 59 distorted distorted 6078 6093 6094 6095 6112 P U B 60 distorted distorted 6100 6113 6114 6115 6132 P C B 61 distorted distorted 6120 6133 6134 6135 6152 P C B 62 distorted distorted 6140 6153 6154 6155 6172 P C B 63 distorted distorted 6160 6173 6174 6175 6192 P U B 64 distorted distorted 6180 6193 6194 6195 6212 P C B 65 distorted distorted 6200 6213 6214 6215 6232 P C B 66 distorted distorted 6220 6233 6234 6235 6252 P C B 67 distorted distorted 6240 6253 6254 6255 6272 P U B 67 distorted distorted 6260 6273 6274 6275 6292 P C B 68 distorted distorted 6280 6293 6294 6295 6312 P U B 69 distorted distorted 6300 6313 6314 6315 6332 P C B 70 distorted distorted 6320 6333 6334 6335 6352 P C B 71 distorted distorted 6340 6353 6354 6355 6372 P C B 72 distorted distorted 6360 6373 6374 6375 6392 P G B 73 distorted distorted 6380 6393 6394 6395 6415 P C B 74 distorted distorted 6400 6416 6417 6418 6435 P C B 75 distorted distorted 6423 6436 6437 6438 ---------------------------------------------------------------------------------