ID code: '3UD4' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 734 C1' GTP R 8 beta 729 735 732 757 C1' G R 9 beta 752 758 755 780 C1' U R 10 beta 775 781 778 800 C1' C R 11 beta 795 801 798 820 C1' A R 12 beta 815 821 818 842 C1' C R 13 beta 837 843 840 862 C1' G R 14 beta 857 863 860 885 C1' C R 15 beta 880 886 883 905 C1' A R 16 beta 900 906 903 927 C1' C R 17 beta 922 928 925 947 C1' A R 18 beta 942 948 945 969 C1' G R 19 beta 964 970 967 992 C1' G R 20 beta 987 993 990 1015 C1' G R 21 beta 1010 1016 1013 1038 C1' C R 22 beta 1033 1039 1036 1058 C1' A R 23 beta 1053 1059 1056 1080 C1' A R 24 beta 1075 1081 1078 1102 C1' A R 25 beta 1097 1103 1100 1124 C1' C R 26 beta 1119 1125 1122 1144 C1' C R 27 beta 1139 1145 1142 1164 C1' A R 28 beta 1159 1165 1162 1186 C1' U R 29 beta 1181 1187 1184 1206 C1' U R 30 beta 1201 1207 1204 1226 C1' C R 31 beta 1221 1227 1224 1246 C1' G R 32 beta 1241 1247 1244 1269 C1' A R 33 beta 1264 1270 1267 1291 C1' A R 34 beta 1286 1292 1289 1313 C1' A R 35 beta 1308 1314 1311 1335 C1' G R 36 beta 1330 1336 1333 1358 C1' A R 37 beta 1353 1359 1356 1380 C1' G R 38 beta 1375 1381 1378 1403 C1' U R 39 beta 1398 1404 1401 1423 C1' G R 40 beta 1418 1424 1421 1446 C1' G R 41 beta 1441 1447 1444 1469 C1' G R 42 beta 1464 1470 1467 1492 C1' A R 43 beta 1487 1493 1490 1514 C1' C R 44 beta 1509 1515 1512 1534 C1' G R 45 beta 1529 1535 1532 1557 C1' C R 46 beta 1552 1558 1555 1577 C1' A R 47 beta 1572 1578 1575 1599 C1' A R 48 beta 1594 1600 1597 1621 C1' A R 49 beta 1616 1622 1619 1643 C1' G R 50 beta 1638 1644 1641 1666 C1' C R 51 beta 1661 1667 1664 1686 C1' C R 52 beta 1681 1687 1684 1706 C1' U R 53 beta 1701 1707 1704 1726 C1' C R 54 beta 1721 1727 1724 1746 C1' C R 55 beta 1741 1747 1744 1766 C1' G R 56 beta 1761 1767 1764 1789 C1' G R 57 beta 1784 1790 1787 1812 C1' C R 58 beta 1807 1813 1810 1832 C1' C R 59 beta 1827 1833 1830 1852 C1' U R 60 beta 1847 1853 1850 1872 C1' A R 61 beta 1867 1873 1870 1894 C1' A R 62 beta 1889 1895 1892 1916 C1' A R 63 beta 1911 1917 1914 1938 C1' C R 64 beta 1933 1939 1936 1958 C1' C R 65 beta 1953 1959 1956 1978 C1' A R 660 beta 1973 1979 1976 2000 C1' U R 661 beta 1995 2001 1998 2020 C1' U R 662 beta 2015 2021 2018 2040 C1' G R 663 beta 2035 2041 2038 2063 C1' C R 664 beta 2058 2064 2061 2083 C1' A R 665 beta 2078 2084 2081 2105 C1' C R 666 beta 2100 2106 2103 2125 C1' U R 667 beta 2120 2126 2123 2145 C1' C R 668 beta 2140 2146 2143 2165 C1' C R 669 beta 2160 2166 2163 2185 C1' G R 75 beta 2180 2186 2183 2208 C1' G R 76 beta 2203 2209 2206 2231 C1' U R 77 beta 2226 2232 2229 2251 C1' A R 78 beta 2246 2252 2249 2273 C1' G R 79 beta 2268 2274 2271 2296 C1' G R 80 beta 2291 2297 2294 2319 C1' U R 81 beta 2314 2320 2317 2339 C1' A R 82 beta 2334 2340 2337 2361 C1' G R 83 beta 2356 2362 2359 2384 C1' C R 84 beta 2379 2385 2382 2404 C1' G R 85 beta 2399 2405 2402 2427 C1' G R 86 beta 2422 2428 2425 2450 C1' G R 87 beta 2445 2451 2448 2473 C1' G R 88 beta 2468 2474 2471 2496 C1' U R 89 beta 2491 2497 2494 2516 C1' U R 90 beta 2511 2517 2514 2536 C1' A R 91 beta 2531 2537 2534 2558 C1' U R 92 beta 2553 2559 2556 2578 C1' C R 93 beta 2573 2579 2576 2598 C1' G R 94 beta 2593 2599 2596 2621 C1' A R 95 beta 2616 2622 2619 2643 C1' U R 96 beta 2638 2644 2641 2663 C1' G R 97 beta 2658 2664 2661 2686 C1' G R 98 beta 2681 2687 2684 2707 C1' G B 1 beta 2702 2708 2705 2730 C1' A B 2 beta 2725 2731 2728 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 732 C2' GTP R 8 OK 734 730 733 755 C2' G R 9 OK 757 753 756 778 C2' U R 10 OK 780 776 779 798 C2' C R 11 OK 800 796 799 818 C2' A R 12 OK 820 816 819 840 C2' C R 13 OK 842 838 841 860 C2' G R 14 OK 862 858 861 883 C2' C R 15 OK 885 881 884 903 C2' A R 16 OK 905 901 904 925 C2' C R 17 OK 927 923 926 945 C2' A R 18 OK 947 943 946 967 C2' G R 19 OK 969 965 968 990 C2' G R 20 OK 992 988 991 1013 C2' G R 21 OK 1015 1011 1014 1036 C2' C R 22 OK 1038 1034 1037 1056 C2' A R 23 OK 1058 1054 1057 1078 C2' A R 24 OK 1080 1076 1079 1100 C2' A R 25 OK 1102 1098 1101 1122 C2' C R 26 OK 1124 1120 1123 1142 C2' C R 27 OK 1144 1140 1143 1162 C2' A R 28 OK 1164 1160 1163 1184 C2' U R 29 OK 1186 1182 1185 1204 C2' U R 30 OK 1206 1202 1205 1224 C2' C R 31 OK 1226 1222 1225 1244 C2' G R 32 OK 1246 1242 1245 1267 C2' A R 33 OK 1269 1265 1268 1289 C2' A R 34 OK 1291 1287 1290 1311 C2' A R 35 OK 1313 1309 1312 1333 C2' G R 36 OK 1335 1331 1334 1356 C2' A R 37 OK 1358 1354 1357 1378 C2' G R 38 OK 1380 1376 1379 1401 C2' U R 39 OK 1403 1399 1402 1421 C2' G R 40 OK 1423 1419 1422 1444 C2' G R 41 OK 1446 1442 1445 1467 C2' G R 42 OK 1469 1465 1468 1490 C2' A R 43 OK 1492 1488 1491 1512 C2' C R 44 OK 1514 1510 1513 1532 C2' G R 45 OK 1534 1530 1533 1555 C2' C R 46 OK 1557 1553 1556 1575 C2' A R 47 OK 1577 1573 1576 1597 C2' A R 48 OK 1599 1595 1598 1619 C2' A R 49 OK 1621 1617 1620 1641 C2' G R 50 OK 1643 1639 1642 1664 C2' C R 51 OK 1666 1662 1665 1684 C2' C R 52 OK 1686 1682 1685 1704 C2' U R 53 OK 1706 1702 1705 1724 C2' C R 54 OK 1726 1722 1725 1744 C2' C R 55 OK 1746 1742 1745 1764 C2' G R 56 OK 1766 1762 1765 1787 C2' G R 57 OK 1789 1785 1788 1810 C2' C R 58 OK 1812 1808 1811 1830 C2' C R 59 OK 1832 1828 1831 1850 C2' U R 60 OK 1852 1848 1851 1870 C2' A R 61 OK 1872 1868 1871 1892 C2' A R 62 OK 1894 1890 1893 1914 C2' A R 63 OK 1916 1912 1915 1936 C2' C R 64 OK 1938 1934 1937 1956 C2' C R 65 OK 1958 1954 1957 1976 C2' A R 660 OK 1978 1974 1977 1998 C2' U R 661 OK 2000 1996 1999 2018 C2' U R 662 OK 2020 2016 2019 2038 C2' G R 663 OK 2040 2036 2039 2061 C2' C R 664 OK 2063 2059 2062 2081 C2' A R 665 OK 2083 2079 2082 2103 C2' C R 666 OK 2105 2101 2104 2123 C2' U R 667 OK 2125 2121 2124 2143 C2' C R 668 OK 2145 2141 2144 2163 C2' C R 669 OK 2165 2161 2164 2183 C2' G R 75 OK 2185 2181 2184 2206 C2' G R 76 OK 2208 2204 2207 2229 C2' U R 77 OK 2231 2227 2230 2249 C2' A R 78 OK 2251 2247 2250 2271 C2' G R 79 OK 2273 2269 2272 2294 C2' G R 80 OK 2296 2292 2295 2317 C2' U R 81 OK 2319 2315 2318 2337 C2' A R 82 OK 2339 2335 2338 2359 C2' G R 83 OK 2361 2357 2360 2382 C2' C R 84 OK 2384 2380 2383 2402 C2' G R 85 OK 2404 2400 2403 2425 C2' G R 86 OK 2427 2423 2426 2448 C2' G R 87 OK 2450 2446 2449 2471 C2' G R 88 OK 2473 2469 2472 2494 C2' U R 89 OK 2496 2492 2495 2514 C2' U R 90 OK 2516 2512 2515 2534 C2' A R 91 OK 2536 2532 2535 2556 C2' U R 92 OK 2558 2554 2557 2576 C2' C R 93 OK 2578 2574 2577 2596 C2' G R 94 OK 2598 2594 2597 2619 C2' A R 95 OK 2621 2617 2620 2641 C2' U R 96 OK 2643 2639 2642 2661 C2' G R 97 OK 2663 2659 2662 2684 C2' G R 98 OK 2686 2682 2685 2705 C2' G B 1 OK 2707 2703 2706 2728 C2' A B 2 OK 2730 2726 2729 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 730 C3' GTP R 8 OK 728 731 732 753 C3' G R 9 OK 751 754 755 776 C3' U R 10 OK 774 777 778 796 C3' C R 11 OK 794 797 798 816 C3' A R 12 OK 814 817 818 838 C3' C R 13 OK 836 839 840 858 C3' G R 14 OK 856 859 860 881 C3' C R 15 OK 879 882 883 901 C3' A R 16 OK 899 902 903 923 C3' C R 17 OK 921 924 925 943 C3' A R 18 OK 941 944 945 965 C3' G R 19 OK 963 966 967 988 C3' G R 20 OK 986 989 990 1011 C3' G R 21 OK 1009 1012 1013 1034 C3' C R 22 OK 1032 1035 1036 1054 C3' A R 23 OK 1052 1055 1056 1076 C3' A R 24 OK 1074 1077 1078 1098 C3' A R 25 OK 1096 1099 1100 1120 C3' C R 26 OK 1118 1121 1122 1140 C3' C R 27 OK 1138 1141 1142 1160 C3' A R 28 OK 1158 1161 1162 1182 C3' U R 29 OK 1180 1183 1184 1202 C3' U R 30 OK 1200 1203 1204 1222 C3' C R 31 OK 1220 1223 1224 1242 C3' G R 32 OK 1240 1243 1244 1265 C3' A R 33 OK 1263 1266 1267 1287 C3' A R 34 OK 1285 1288 1289 1309 C3' A R 35 OK 1307 1310 1311 1331 C3' G R 36 OK 1329 1332 1333 1354 C3' A R 37 OK 1352 1355 1356 1376 C3' G R 38 OK 1374 1377 1378 1399 C3' U R 39 OK 1397 1400 1401 1419 C3' G R 40 OK 1417 1420 1421 1442 C3' G R 41 OK 1440 1443 1444 1465 C3' G R 42 OK 1463 1466 1467 1488 C3' A R 43 OK 1486 1489 1490 1510 C3' C R 44 OK 1508 1511 1512 1530 C3' G R 45 OK 1528 1531 1532 1553 C3' C R 46 OK 1551 1554 1555 1573 C3' A R 47 OK 1571 1574 1575 1595 C3' A R 48 OK 1593 1596 1597 1617 C3' A R 49 OK 1615 1618 1619 1639 C3' G R 50 OK 1637 1640 1641 1662 C3' C R 51 OK 1660 1663 1664 1682 C3' C R 52 OK 1680 1683 1684 1702 C3' U R 53 OK 1700 1703 1704 1722 C3' C R 54 OK 1720 1723 1724 1742 C3' C R 55 OK 1740 1743 1744 1762 C3' G R 56 OK 1760 1763 1764 1785 C3' G R 57 OK 1783 1786 1787 1808 C3' C R 58 OK 1806 1809 1810 1828 C3' C R 59 OK 1826 1829 1830 1848 C3' U R 60 OK 1846 1849 1850 1868 C3' A R 61 OK 1866 1869 1870 1890 C3' A R 62 OK 1888 1891 1892 1912 C3' A R 63 OK 1910 1913 1914 1934 C3' C R 64 OK 1932 1935 1936 1954 C3' C R 65 OK 1952 1955 1956 1974 C3' A R 660 OK 1972 1975 1976 1996 C3' U R 661 OK 1994 1997 1998 2016 C3' U R 662 OK 2014 2017 2018 2036 C3' G R 663 OK 2034 2037 2038 2059 C3' C R 664 OK 2057 2060 2061 2079 C3' A R 665 OK 2077 2080 2081 2101 C3' C R 666 OK 2099 2102 2103 2121 C3' U R 667 OK 2119 2122 2123 2141 C3' C R 668 OK 2139 2142 2143 2161 C3' C R 669 OK 2159 2162 2163 2181 C3' G R 75 OK 2179 2182 2183 2204 C3' G R 76 OK 2202 2205 2206 2227 C3' U R 77 OK 2225 2228 2229 2247 C3' A R 78 OK 2245 2248 2249 2269 C3' G R 79 OK 2267 2270 2271 2292 C3' G R 80 OK 2290 2293 2294 2315 C3' U R 81 OK 2313 2316 2317 2335 C3' A R 82 OK 2333 2336 2337 2357 C3' G R 83 OK 2355 2358 2359 2380 C3' C R 84 OK 2378 2381 2382 2400 C3' G R 85 OK 2398 2401 2402 2423 C3' G R 86 OK 2421 2424 2425 2446 C3' G R 87 OK 2444 2447 2448 2469 C3' G R 88 OK 2467 2470 2471 2492 C3' U R 89 OK 2490 2493 2494 2512 C3' U R 90 OK 2510 2513 2514 2532 C3' A R 91 OK 2530 2533 2534 2554 C3' U R 92 OK 2552 2555 2556 2574 C3' C R 93 OK 2572 2575 2576 2594 C3' G R 94 OK 2592 2595 2596 2617 C3' A R 95 OK 2615 2618 2619 2639 C3' U R 96 OK 2637 2640 2641 2659 C3' G R 97 OK 2657 2660 2661 2682 C3' G R 98 OK 2680 2683 2684 2703 C3' G B 1 OK 2701 2704 2705 2726 C3' A B 2 OK 2724 2727 2728 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 728 C4' GTP R 8 OK 730 727 729 751 C4' G R 9 OK 753 750 752 774 C4' U R 10 OK 776 773 775 794 C4' C R 11 OK 796 793 795 814 C4' A R 12 OK 816 813 815 836 C4' C R 13 OK 838 835 837 856 C4' G R 14 OK 858 855 857 879 C4' C R 15 OK 881 878 880 899 C4' A R 16 OK 901 898 900 921 C4' C R 17 OK 923 920 922 941 C4' A R 18 OK 943 940 942 963 C4' G R 19 OK 965 962 964 986 C4' G R 20 OK 988 985 987 1009 C4' G R 21 OK 1011 1008 1010 1032 C4' C R 22 OK 1034 1031 1033 1052 C4' A R 23 OK 1054 1051 1053 1074 C4' A R 24 OK 1076 1073 1075 1096 C4' A R 25 OK 1098 1095 1097 1118 C4' C R 26 OK 1120 1117 1119 1138 C4' C R 27 OK 1140 1137 1139 1158 C4' A R 28 OK 1160 1157 1159 1180 C4' U R 29 OK 1182 1179 1181 1200 C4' U R 30 OK 1202 1199 1201 1220 C4' C R 31 OK 1222 1219 1221 1240 C4' G R 32 OK 1242 1239 1241 1263 C4' A R 33 OK 1265 1262 1264 1285 C4' A R 34 OK 1287 1284 1286 1307 C4' A R 35 OK 1309 1306 1308 1329 C4' G R 36 OK 1331 1328 1330 1352 C4' A R 37 OK 1354 1351 1353 1374 C4' G R 38 OK 1376 1373 1375 1397 C4' U R 39 OK 1399 1396 1398 1417 C4' G R 40 OK 1419 1416 1418 1440 C4' G R 41 OK 1442 1439 1441 1463 C4' G R 42 OK 1465 1462 1464 1486 C4' A R 43 OK 1488 1485 1487 1508 C4' C R 44 OK 1510 1507 1509 1528 C4' G R 45 OK 1530 1527 1529 1551 C4' C R 46 OK 1553 1550 1552 1571 C4' A R 47 OK 1573 1570 1572 1593 C4' A R 48 OK 1595 1592 1594 1615 C4' A R 49 OK 1617 1614 1616 1637 C4' G R 50 OK 1639 1636 1638 1660 C4' C R 51 OK 1662 1659 1661 1680 C4' C R 52 OK 1682 1679 1681 1700 C4' U R 53 OK 1702 1699 1701 1720 C4' C R 54 OK 1722 1719 1721 1740 C4' C R 55 OK 1742 1739 1741 1760 C4' G R 56 OK 1762 1759 1761 1783 C4' G R 57 OK 1785 1782 1784 1806 C4' C R 58 OK 1808 1805 1807 1826 C4' C R 59 OK 1828 1825 1827 1846 C4' U R 60 OK 1848 1845 1847 1866 C4' A R 61 OK 1868 1865 1867 1888 C4' A R 62 OK 1890 1887 1889 1910 C4' A R 63 OK 1912 1909 1911 1932 C4' C R 64 OK 1934 1931 1933 1952 C4' C R 65 OK 1954 1951 1953 1972 C4' A R 660 OK 1974 1971 1973 1994 C4' U R 661 OK 1996 1993 1995 2014 C4' U R 662 OK 2016 2013 2015 2034 C4' G R 663 OK 2036 2033 2035 2057 C4' C R 664 OK 2059 2056 2058 2077 C4' A R 665 OK 2079 2076 2078 2099 C4' C R 666 OK 2101 2098 2100 2119 C4' U R 667 OK 2121 2118 2120 2139 C4' C R 668 OK 2141 2138 2140 2159 C4' C R 669 OK 2161 2158 2160 2179 C4' G R 75 OK 2181 2178 2180 2202 C4' G R 76 OK 2204 2201 2203 2225 C4' U R 77 OK 2227 2224 2226 2245 C4' A R 78 OK 2247 2244 2246 2267 C4' G R 79 OK 2269 2266 2268 2290 C4' G R 80 OK 2292 2289 2291 2313 C4' U R 81 OK 2315 2312 2314 2333 C4' A R 82 OK 2335 2332 2334 2355 C4' G R 83 OK 2357 2354 2356 2378 C4' C R 84 OK 2380 2377 2379 2398 C4' G R 85 OK 2400 2397 2399 2421 C4' G R 86 OK 2423 2420 2422 2444 C4' G R 87 OK 2446 2443 2445 2467 C4' G R 88 OK 2469 2466 2468 2490 C4' U R 89 OK 2492 2489 2491 2510 C4' U R 90 OK 2512 2509 2511 2530 C4' A R 91 OK 2532 2529 2531 2552 C4' U R 92 OK 2554 2551 2553 2572 C4' C R 93 OK 2574 2571 2573 2592 C4' G R 94 OK 2594 2591 2593 2615 C4' A R 95 OK 2617 2614 2616 2637 C4' U R 96 OK 2639 2636 2638 2657 C4' G R 97 OK 2659 2656 2658 2680 C4' G R 98 OK 2682 2679 2681 2701 C4' G B 1 OK 2703 2700 2702 2724 C4' A B 2 OK 2726 2723 2725 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 727 C5' GTP R 8 726 728 750 C5' G R 9 749 751 773 C5' U R 10 772 774 793 C5' C R 11 792 794 813 C5' A R 12 812 814 835 C5' C R 13 834 836 855 C5' G R 14 854 856 878 C5' C R 15 877 879 898 C5' A R 16 897 899 920 C5' C R 17 919 921 940 C5' A R 18 939 941 962 C5' G R 19 961 963 985 C5' G R 20 984 986 1008 C5' G R 21 1007 1009 1031 C5' C R 22 1030 1032 1051 C5' A R 23 1050 1052 1073 C5' A R 24 1072 1074 1095 C5' A R 25 1094 1096 1117 C5' C R 26 1116 1118 1137 C5' C R 27 1136 1138 1157 C5' A R 28 1156 1158 1179 C5' U R 29 1178 1180 1199 C5' U R 30 1198 1200 1219 C5' C R 31 1218 1220 1239 C5' G R 32 1238 1240 1262 C5' A R 33 1261 1263 1284 C5' A R 34 1283 1285 1306 C5' A R 35 1305 1307 1328 C5' G R 36 1327 1329 1351 C5' A R 37 1350 1352 1373 C5' G R 38 1372 1374 1396 C5' U R 39 1395 1397 1416 C5' G R 40 1415 1417 1439 C5' G R 41 1438 1440 1462 C5' G R 42 1461 1463 1485 C5' A R 43 1484 1486 1507 C5' C R 44 1506 1508 1527 C5' G R 45 1526 1528 1550 C5' C R 46 1549 1551 1570 C5' A R 47 1569 1571 1592 C5' A R 48 1591 1593 1614 C5' A R 49 1613 1615 1636 C5' G R 50 1635 1637 1659 C5' C R 51 1658 1660 1679 C5' C R 52 1678 1680 1699 C5' U R 53 1698 1700 1719 C5' C R 54 1718 1720 1739 C5' C R 55 1738 1740 1759 C5' G R 56 1758 1760 1782 C5' G R 57 1781 1783 1805 C5' C R 58 1804 1806 1825 C5' C R 59 1824 1826 1845 C5' U R 60 1844 1846 1865 C5' A R 61 1864 1866 1887 C5' A R 62 1886 1888 1909 C5' A R 63 1908 1910 1931 C5' C R 64 1930 1932 1951 C5' C R 65 1950 1952 1971 C5' A R 660 1970 1972 1993 C5' U R 661 1992 1994 2013 C5' U R 662 2012 2014 2033 C5' G R 663 2032 2034 2056 C5' C R 664 2055 2057 2076 C5' A R 665 2075 2077 2098 C5' C R 666 2097 2099 2118 C5' U R 667 2117 2119 2138 C5' C R 668 2137 2139 2158 C5' C R 669 2157 2159 2178 C5' G R 75 2177 2179 2201 C5' G R 76 2200 2202 2224 C5' U R 77 2223 2225 2244 C5' A R 78 2243 2245 2266 C5' G R 79 2265 2267 2289 C5' G R 80 2288 2290 2312 C5' U R 81 2311 2313 2332 C5' A R 82 2331 2333 2354 C5' G R 83 2353 2355 2377 C5' C R 84 2376 2378 2397 C5' G R 85 2396 2398 2420 C5' G R 86 2419 2421 2443 C5' G R 87 2442 2444 2466 C5' G R 88 2465 2467 2489 C5' U R 89 2488 2490 2509 C5' U R 90 2508 2510 2529 C5' A R 91 2528 2530 2551 C5' U R 92 2550 2552 2571 C5' C R 93 2570 2572 2591 C5' G R 94 2590 2592 2614 C5' A R 95 2613 2615 2636 C5' U R 96 2635 2637 2656 C5' G R 97 2655 2657 2679 C5' G R 98 2678 2680 2700 C5' G B 1 2699 2701 2723 C5' A B 2 2722 2724 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 746 P G R 9 distorted distorted 731 747 748 749 769 P U R 10 distorted distorted 754 770 771 772 789 P C R 11 distorted distorted 777 790 791 792 809 P A R 12 distorted distorted 797 810 811 812 831 P C R 13 distorted distorted 817 832 833 834 851 P G R 14 distorted distorted 839 852 853 854 874 P C R 15 distorted distorted 859 875 876 877 894 P A R 16 distorted distorted 882 895 896 897 916 P C R 17 distorted distorted 902 917 918 919 936 P A R 18 distorted distorted 924 937 938 939 958 P G R 19 distorted distorted 944 959 960 961 981 P G R 20 distorted distorted 966 982 983 984 1004 P G R 21 distorted distorted 989 1005 1006 1007 1027 P C R 22 distorted distorted 1012 1028 1029 1030 1047 P A R 23 distorted distorted 1035 1048 1049 1050 1069 P A R 24 distorted distorted 1055 1070 1071 1072 1091 P A R 25 distorted distorted 1077 1092 1093 1094 1113 P C R 26 distorted distorted 1099 1114 1115 1116 1133 P C R 27 distorted distorted 1121 1134 1135 1136 1153 P A R 28 distorted distorted 1141 1154 1155 1156 1175 P U R 29 distorted distorted 1161 1176 1177 1178 1195 P U R 30 distorted distorted 1183 1196 1197 1198 1215 P C R 31 distorted distorted 1203 1216 1217 1218 1235 P G R 32 distorted distorted 1223 1236 1237 1238 1258 P A R 33 distorted distorted 1243 1259 1260 1261 1280 P A R 34 distorted distorted 1266 1281 1282 1283 1302 P A R 35 distorted distorted 1288 1303 1304 1305 1324 P G R 36 distorted distorted 1310 1325 1326 1327 1347 P A R 37 distorted distorted 1332 1348 1349 1350 1369 P G R 38 distorted distorted 1355 1370 1371 1372 1392 P U R 39 distorted distorted 1377 1393 1394 1395 1412 P G R 40 distorted distorted 1400 1413 1414 1415 1435 P G R 41 distorted distorted 1420 1436 1437 1438 1458 P G R 42 distorted distorted 1443 1459 1460 1461 1481 P A R 43 distorted distorted 1466 1482 1483 1484 1503 P C R 44 distorted distorted 1489 1504 1505 1506 1523 P G R 45 distorted distorted 1511 1524 1525 1526 1546 P C R 46 distorted distorted 1531 1547 1548 1549 1566 P A R 47 distorted distorted 1554 1567 1568 1569 1588 P A R 48 distorted distorted 1574 1589 1590 1591 1610 P A R 49 distorted distorted 1596 1611 1612 1613 1632 P G R 50 distorted distorted 1618 1633 1634 1635 1655 P C R 51 distorted distorted 1640 1656 1657 1658 1675 P C R 52 distorted distorted 1663 1676 1677 1678 1695 P U R 53 distorted distorted 1683 1696 1697 1698 1715 P C R 54 distorted distorted 1703 1716 1717 1718 1735 P C R 55 distorted distorted 1723 1736 1737 1738 1755 P G R 56 distorted distorted 1743 1756 1757 1758 1778 P G R 57 distorted distorted 1763 1779 1780 1781 1801 P C R 58 distorted distorted 1786 1802 1803 1804 1821 P C R 59 distorted distorted 1809 1822 1823 1824 1841 P U R 60 distorted distorted 1829 1842 1843 1844 1861 P A R 61 distorted distorted 1849 1862 1863 1864 1883 P A R 62 distorted distorted 1869 1884 1885 1886 1905 P A R 63 distorted distorted 1891 1906 1907 1908 1927 P C R 64 distorted distorted 1913 1928 1929 1930 1947 P C R 65 distorted distorted 1935 1948 1949 1950 1967 P A R 660 distorted distorted 1955 1968 1969 1970 1989 P U R 661 distorted distorted 1975 1990 1991 1992 2009 P U R 662 distorted distorted 1997 2010 2011 2012 2029 P G R 663 distorted distorted 2017 2030 2031 2032 2052 P C R 664 distorted distorted 2037 2053 2054 2055 2072 P A R 665 distorted distorted 2060 2073 2074 2075 2094 P C R 666 distorted distorted 2080 2095 2096 2097 2114 P U R 667 distorted distorted 2102 2115 2116 2117 2134 P C R 668 distorted distorted 2122 2135 2136 2137 2154 P C R 669 distorted distorted 2142 2155 2156 2157 2174 P G R 75 distorted distorted 2162 2175 2176 2177 2197 P G R 76 distorted distorted 2182 2198 2199 2200 2220 P U R 77 distorted distorted 2205 2221 2222 2223 2240 P A R 78 distorted distorted 2228 2241 2242 2243 2262 P G R 79 distorted distorted 2248 2263 2264 2265 2285 P G R 80 distorted distorted 2270 2286 2287 2288 2308 P U R 81 distorted distorted 2293 2309 2310 2311 2328 P A R 82 distorted distorted 2316 2329 2330 2331 2350 P G R 83 distorted distorted 2336 2351 2352 2353 2373 P C R 84 distorted distorted 2358 2374 2375 2376 2393 P G R 85 distorted distorted 2381 2394 2395 2396 2416 P G R 86 distorted distorted 2401 2417 2418 2419 2439 P G R 87 distorted distorted 2424 2440 2441 2442 2462 P G R 88 distorted distorted 2447 2463 2464 2465 2485 P U R 89 distorted distorted 2470 2486 2487 2488 2505 P U R 90 distorted distorted 2493 2506 2507 2508 2525 P A R 91 distorted distorted 2513 2526 2527 2528 2547 P U R 92 distorted distorted 2533 2548 2549 2550 2567 P C R 93 distorted distorted 2555 2568 2569 2570 2587 P G R 94 distorted distorted 2575 2588 2589 2590 2610 P A R 95 distorted distorted 2595 2611 2612 2613 2632 P U R 96 distorted distorted 2618 2633 2634 2635 2652 P G R 97 distorted distorted 2640 2653 2654 2655 2675 P G R 98 distorted distorted 2660 2676 2677 2678 2719 P A B 2 distorted distorted 2704 2720 2721 2722 ---------------------------------------------------------------------------------