ID code: '3UCZ' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 764 C1' GTP R 8 beta 759 765 762 787 C1' G R 9 beta 782 788 785 810 C1' U R 10 beta 805 811 808 830 C1' C R 11 beta 825 831 828 850 C1' A R 12 beta 845 851 848 872 C1' C R 13 beta 867 873 870 892 C1' G R 14 beta 887 893 890 915 C1' C R 15 beta 910 916 913 935 C1' A R 16 beta 930 936 933 957 C1' C R 17 beta 952 958 955 977 C1' A R 18 beta 972 978 975 999 C1' G R 19 beta 994 1000 997 1022 C1' G R 20 beta 1017 1023 1020 1045 C1' G R 21 beta 1040 1046 1043 1068 C1' C R 22 beta 1063 1069 1066 1088 C1' A R 23 beta 1083 1089 1086 1110 C1' A R 24 beta 1105 1111 1108 1132 C1' A R 25 beta 1127 1133 1130 1154 C1' C R 26 beta 1149 1155 1152 1174 C1' C R 27 beta 1169 1175 1172 1194 C1' A R 28 beta 1189 1195 1192 1216 C1' U R 29 beta 1211 1217 1214 1236 C1' U R 30 beta 1231 1237 1234 1256 C1' C R 31 beta 1251 1257 1254 1276 C1' G R 32 beta 1271 1277 1274 1299 C1' A R 33 beta 1294 1300 1297 1321 C1' A R 34 beta 1316 1322 1319 1343 C1' A R 35 beta 1338 1344 1341 1365 C1' G R 36 beta 1360 1366 1363 1388 C1' A R 37 beta 1383 1389 1386 1410 C1' G R 38 beta 1405 1411 1408 1433 C1' U R 39 beta 1428 1434 1431 1453 C1' G R 40 beta 1448 1454 1451 1476 C1' G R 41 beta 1471 1477 1474 1499 C1' G R 42 beta 1494 1500 1497 1522 C1' A R 43 beta 1517 1523 1520 1544 C1' C R 44 beta 1539 1545 1542 1564 C1' G R 45 beta 1559 1565 1562 1587 C1' C R 46 beta 1582 1588 1585 1607 C1' A R 47 beta 1602 1608 1605 1629 C1' A R 48 beta 1624 1630 1627 1651 C1' A R 49 beta 1646 1652 1649 1673 C1' G R 50 beta 1668 1674 1671 1696 C1' C R 51 beta 1691 1697 1694 1716 C1' C R 52 beta 1711 1717 1714 1736 C1' U R 53 beta 1731 1737 1734 1756 C1' C R 54 beta 1751 1757 1754 1776 C1' C R 55 beta 1771 1777 1774 1796 C1' G R 56 beta 1791 1797 1794 1819 C1' G R 57 beta 1814 1820 1817 1842 C1' C R 58 beta 1837 1843 1840 1862 C1' C R 59 beta 1857 1863 1860 1882 C1' U R 60 beta 1877 1883 1880 1902 C1' A R 61 beta 1897 1903 1900 1924 C1' A R 62 beta 1919 1925 1922 1946 C1' A R 63 beta 1941 1947 1944 1968 C1' C R 64 beta 1963 1969 1966 1988 C1' C R 65 beta 1983 1989 1986 2008 C1' A R 660 beta 2003 2009 2006 2030 C1' U R 661 beta 2025 2031 2028 2050 C1' U R 662 beta 2045 2051 2048 2070 C1' G R 663 beta 2065 2071 2068 2093 C1' C R 664 beta 2088 2094 2091 2113 C1' A R 665 beta 2108 2114 2111 2135 C1' C R 666 beta 2130 2136 2133 2155 C1' U R 667 beta 2150 2156 2153 2175 C1' C R 668 beta 2170 2176 2173 2195 C1' C R 669 beta 2190 2196 2193 2215 C1' G R 75 beta 2210 2216 2213 2238 C1' G R 76 beta 2233 2239 2236 2261 C1' U R 77 beta 2256 2262 2259 2281 C1' A R 78 beta 2276 2282 2279 2303 C1' G R 79 beta 2298 2304 2301 2326 C1' G R 80 beta 2321 2327 2324 2349 C1' U R 81 beta 2344 2350 2347 2369 C1' A R 82 beta 2364 2370 2367 2391 C1' G R 83 beta 2386 2392 2389 2414 C1' C R 84 beta 2409 2415 2412 2434 C1' G R 85 beta 2429 2435 2432 2457 C1' G R 86 beta 2452 2458 2455 2480 C1' G R 87 beta 2475 2481 2478 2503 C1' G R 88 beta 2498 2504 2501 2526 C1' U R 89 beta 2521 2527 2524 2546 C1' U R 90 beta 2541 2547 2544 2566 C1' A R 91 beta 2561 2567 2564 2588 C1' C R 92 beta 2583 2589 2586 2608 C1' C R 93 beta 2603 2609 2606 2628 C1' G R 94 beta 2623 2629 2626 2651 C1' A R 95 beta 2646 2652 2649 2673 C1' U R 96 beta 2668 2674 2671 2693 C1' G R 97 beta 2688 2694 2691 2716 C1' G R 98 beta 2711 2717 2714 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 762 C2' GTP R 8 OK 764 760 763 785 C2' G R 9 OK 787 783 786 808 C2' U R 10 OK 810 806 809 828 C2' C R 11 OK 830 826 829 848 C2' A R 12 OK 850 846 849 870 C2' C R 13 OK 872 868 871 890 C2' G R 14 OK 892 888 891 913 C2' C R 15 OK 915 911 914 933 C2' A R 16 OK 935 931 934 955 C2' C R 17 OK 957 953 956 975 C2' A R 18 OK 977 973 976 997 C2' G R 19 OK 999 995 998 1020 C2' G R 20 OK 1022 1018 1021 1043 C2' G R 21 OK 1045 1041 1044 1066 C2' C R 22 OK 1068 1064 1067 1086 C2' A R 23 OK 1088 1084 1087 1108 C2' A R 24 OK 1110 1106 1109 1130 C2' A R 25 OK 1132 1128 1131 1152 C2' C R 26 OK 1154 1150 1153 1172 C2' C R 27 OK 1174 1170 1173 1192 C2' A R 28 OK 1194 1190 1193 1214 C2' U R 29 OK 1216 1212 1215 1234 C2' U R 30 OK 1236 1232 1235 1254 C2' C R 31 OK 1256 1252 1255 1274 C2' G R 32 OK 1276 1272 1275 1297 C2' A R 33 OK 1299 1295 1298 1319 C2' A R 34 OK 1321 1317 1320 1341 C2' A R 35 OK 1343 1339 1342 1363 C2' G R 36 OK 1365 1361 1364 1386 C2' A R 37 OK 1388 1384 1387 1408 C2' G R 38 OK 1410 1406 1409 1431 C2' U R 39 OK 1433 1429 1432 1451 C2' G R 40 OK 1453 1449 1452 1474 C2' G R 41 OK 1476 1472 1475 1497 C2' G R 42 OK 1499 1495 1498 1520 C2' A R 43 OK 1522 1518 1521 1542 C2' C R 44 OK 1544 1540 1543 1562 C2' G R 45 OK 1564 1560 1563 1585 C2' C R 46 OK 1587 1583 1586 1605 C2' A R 47 OK 1607 1603 1606 1627 C2' A R 48 OK 1629 1625 1628 1649 C2' A R 49 OK 1651 1647 1650 1671 C2' G R 50 OK 1673 1669 1672 1694 C2' C R 51 OK 1696 1692 1695 1714 C2' C R 52 OK 1716 1712 1715 1734 C2' U R 53 OK 1736 1732 1735 1754 C2' C R 54 OK 1756 1752 1755 1774 C2' C R 55 OK 1776 1772 1775 1794 C2' G R 56 OK 1796 1792 1795 1817 C2' G R 57 OK 1819 1815 1818 1840 C2' C R 58 OK 1842 1838 1841 1860 C2' C R 59 OK 1862 1858 1861 1880 C2' U R 60 OK 1882 1878 1881 1900 C2' A R 61 OK 1902 1898 1901 1922 C2' A R 62 OK 1924 1920 1923 1944 C2' A R 63 OK 1946 1942 1945 1966 C2' C R 64 OK 1968 1964 1967 1986 C2' C R 65 OK 1988 1984 1987 2006 C2' A R 660 OK 2008 2004 2007 2028 C2' U R 661 OK 2030 2026 2029 2048 C2' U R 662 OK 2050 2046 2049 2068 C2' G R 663 OK 2070 2066 2069 2091 C2' C R 664 OK 2093 2089 2092 2111 C2' A R 665 OK 2113 2109 2112 2133 C2' C R 666 OK 2135 2131 2134 2153 C2' U R 667 OK 2155 2151 2154 2173 C2' C R 668 OK 2175 2171 2174 2193 C2' C R 669 OK 2195 2191 2194 2213 C2' G R 75 OK 2215 2211 2214 2236 C2' G R 76 OK 2238 2234 2237 2259 C2' U R 77 OK 2261 2257 2260 2279 C2' A R 78 OK 2281 2277 2280 2301 C2' G R 79 OK 2303 2299 2302 2324 C2' G R 80 OK 2326 2322 2325 2347 C2' U R 81 OK 2349 2345 2348 2367 C2' A R 82 OK 2369 2365 2368 2389 C2' G R 83 OK 2391 2387 2390 2412 C2' C R 84 OK 2414 2410 2413 2432 C2' G R 85 OK 2434 2430 2433 2455 C2' G R 86 OK 2457 2453 2456 2478 C2' G R 87 OK 2480 2476 2479 2501 C2' G R 88 OK 2503 2499 2502 2524 C2' U R 89 OK 2526 2522 2525 2544 C2' U R 90 OK 2546 2542 2545 2564 C2' A R 91 OK 2566 2562 2565 2586 C2' C R 92 OK 2588 2584 2587 2606 C2' C R 93 OK 2608 2604 2607 2626 C2' G R 94 OK 2628 2624 2627 2649 C2' A R 95 OK 2651 2647 2650 2671 C2' U R 96 OK 2673 2669 2672 2691 C2' G R 97 OK 2693 2689 2692 2714 C2' G R 98 OK 2716 2712 2715 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 760 C3' GTP R 8 OK 758 761 762 783 C3' G R 9 OK 781 784 785 806 C3' U R 10 OK 804 807 808 826 C3' C R 11 OK 824 827 828 846 C3' A R 12 OK 844 847 848 868 C3' C R 13 OK 866 869 870 888 C3' G R 14 OK 886 889 890 911 C3' C R 15 OK 909 912 913 931 C3' A R 16 OK 929 932 933 953 C3' C R 17 OK 951 954 955 973 C3' A R 18 OK 971 974 975 995 C3' G R 19 OK 993 996 997 1018 C3' G R 20 OK 1016 1019 1020 1041 C3' G R 21 OK 1039 1042 1043 1064 C3' C R 22 OK 1062 1065 1066 1084 C3' A R 23 OK 1082 1085 1086 1106 C3' A R 24 OK 1104 1107 1108 1128 C3' A R 25 OK 1126 1129 1130 1150 C3' C R 26 OK 1148 1151 1152 1170 C3' C R 27 OK 1168 1171 1172 1190 C3' A R 28 OK 1188 1191 1192 1212 C3' U R 29 OK 1210 1213 1214 1232 C3' U R 30 OK 1230 1233 1234 1252 C3' C R 31 OK 1250 1253 1254 1272 C3' G R 32 OK 1270 1273 1274 1295 C3' A R 33 OK 1293 1296 1297 1317 C3' A R 34 OK 1315 1318 1319 1339 C3' A R 35 OK 1337 1340 1341 1361 C3' G R 36 OK 1359 1362 1363 1384 C3' A R 37 OK 1382 1385 1386 1406 C3' G R 38 OK 1404 1407 1408 1429 C3' U R 39 OK 1427 1430 1431 1449 C3' G R 40 OK 1447 1450 1451 1472 C3' G R 41 OK 1470 1473 1474 1495 C3' G R 42 OK 1493 1496 1497 1518 C3' A R 43 OK 1516 1519 1520 1540 C3' C R 44 OK 1538 1541 1542 1560 C3' G R 45 OK 1558 1561 1562 1583 C3' C R 46 OK 1581 1584 1585 1603 C3' A R 47 OK 1601 1604 1605 1625 C3' A R 48 OK 1623 1626 1627 1647 C3' A R 49 OK 1645 1648 1649 1669 C3' G R 50 OK 1667 1670 1671 1692 C3' C R 51 OK 1690 1693 1694 1712 C3' C R 52 OK 1710 1713 1714 1732 C3' U R 53 OK 1730 1733 1734 1752 C3' C R 54 OK 1750 1753 1754 1772 C3' C R 55 OK 1770 1773 1774 1792 C3' G R 56 OK 1790 1793 1794 1815 C3' G R 57 OK 1813 1816 1817 1838 C3' C R 58 OK 1836 1839 1840 1858 C3' C R 59 OK 1856 1859 1860 1878 C3' U R 60 OK 1876 1879 1880 1898 C3' A R 61 OK 1896 1899 1900 1920 C3' A R 62 OK 1918 1921 1922 1942 C3' A R 63 OK 1940 1943 1944 1964 C3' C R 64 OK 1962 1965 1966 1984 C3' C R 65 OK 1982 1985 1986 2004 C3' A R 660 OK 2002 2005 2006 2026 C3' U R 661 OK 2024 2027 2028 2046 C3' U R 662 OK 2044 2047 2048 2066 C3' G R 663 OK 2064 2067 2068 2089 C3' C R 664 OK 2087 2090 2091 2109 C3' A R 665 OK 2107 2110 2111 2131 C3' C R 666 OK 2129 2132 2133 2151 C3' U R 667 OK 2149 2152 2153 2171 C3' C R 668 OK 2169 2172 2173 2191 C3' C R 669 OK 2189 2192 2193 2211 C3' G R 75 OK 2209 2212 2213 2234 C3' G R 76 OK 2232 2235 2236 2257 C3' U R 77 OK 2255 2258 2259 2277 C3' A R 78 OK 2275 2278 2279 2299 C3' G R 79 OK 2297 2300 2301 2322 C3' G R 80 OK 2320 2323 2324 2345 C3' U R 81 OK 2343 2346 2347 2365 C3' A R 82 OK 2363 2366 2367 2387 C3' G R 83 OK 2385 2388 2389 2410 C3' C R 84 OK 2408 2411 2412 2430 C3' G R 85 OK 2428 2431 2432 2453 C3' G R 86 OK 2451 2454 2455 2476 C3' G R 87 OK 2474 2477 2478 2499 C3' G R 88 OK 2497 2500 2501 2522 C3' U R 89 OK 2520 2523 2524 2542 C3' U R 90 OK 2540 2543 2544 2562 C3' A R 91 OK 2560 2563 2564 2584 C3' C R 92 OK 2582 2585 2586 2604 C3' C R 93 OK 2602 2605 2606 2624 C3' G R 94 OK 2622 2625 2626 2647 C3' A R 95 OK 2645 2648 2649 2669 C3' U R 96 OK 2667 2670 2671 2689 C3' G R 97 OK 2687 2690 2691 2712 C3' G R 98 OK 2710 2713 2714 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 758 C4' GTP R 8 OK 760 757 759 781 C4' G R 9 OK 783 780 782 804 C4' U R 10 OK 806 803 805 824 C4' C R 11 OK 826 823 825 844 C4' A R 12 OK 846 843 845 866 C4' C R 13 OK 868 865 867 886 C4' G R 14 OK 888 885 887 909 C4' C R 15 OK 911 908 910 929 C4' A R 16 OK 931 928 930 951 C4' C R 17 OK 953 950 952 971 C4' A R 18 OK 973 970 972 993 C4' G R 19 OK 995 992 994 1016 C4' G R 20 OK 1018 1015 1017 1039 C4' G R 21 OK 1041 1038 1040 1062 C4' C R 22 OK 1064 1061 1063 1082 C4' A R 23 OK 1084 1081 1083 1104 C4' A R 24 OK 1106 1103 1105 1126 C4' A R 25 OK 1128 1125 1127 1148 C4' C R 26 OK 1150 1147 1149 1168 C4' C R 27 OK 1170 1167 1169 1188 C4' A R 28 OK 1190 1187 1189 1210 C4' U R 29 OK 1212 1209 1211 1230 C4' U R 30 OK 1232 1229 1231 1250 C4' C R 31 OK 1252 1249 1251 1270 C4' G R 32 OK 1272 1269 1271 1293 C4' A R 33 OK 1295 1292 1294 1315 C4' A R 34 OK 1317 1314 1316 1337 C4' A R 35 OK 1339 1336 1338 1359 C4' G R 36 OK 1361 1358 1360 1382 C4' A R 37 OK 1384 1381 1383 1404 C4' G R 38 OK 1406 1403 1405 1427 C4' U R 39 OK 1429 1426 1428 1447 C4' G R 40 OK 1449 1446 1448 1470 C4' G R 41 OK 1472 1469 1471 1493 C4' G R 42 OK 1495 1492 1494 1516 C4' A R 43 OK 1518 1515 1517 1538 C4' C R 44 OK 1540 1537 1539 1558 C4' G R 45 OK 1560 1557 1559 1581 C4' C R 46 OK 1583 1580 1582 1601 C4' A R 47 OK 1603 1600 1602 1623 C4' A R 48 OK 1625 1622 1624 1645 C4' A R 49 OK 1647 1644 1646 1667 C4' G R 50 OK 1669 1666 1668 1690 C4' C R 51 OK 1692 1689 1691 1710 C4' C R 52 OK 1712 1709 1711 1730 C4' U R 53 OK 1732 1729 1731 1750 C4' C R 54 OK 1752 1749 1751 1770 C4' C R 55 OK 1772 1769 1771 1790 C4' G R 56 OK 1792 1789 1791 1813 C4' G R 57 OK 1815 1812 1814 1836 C4' C R 58 OK 1838 1835 1837 1856 C4' C R 59 OK 1858 1855 1857 1876 C4' U R 60 OK 1878 1875 1877 1896 C4' A R 61 OK 1898 1895 1897 1918 C4' A R 62 OK 1920 1917 1919 1940 C4' A R 63 OK 1942 1939 1941 1962 C4' C R 64 OK 1964 1961 1963 1982 C4' C R 65 OK 1984 1981 1983 2002 C4' A R 660 OK 2004 2001 2003 2024 C4' U R 661 OK 2026 2023 2025 2044 C4' U R 662 OK 2046 2043 2045 2064 C4' G R 663 OK 2066 2063 2065 2087 C4' C R 664 OK 2089 2086 2088 2107 C4' A R 665 OK 2109 2106 2108 2129 C4' C R 666 OK 2131 2128 2130 2149 C4' U R 667 OK 2151 2148 2150 2169 C4' C R 668 OK 2171 2168 2170 2189 C4' C R 669 OK 2191 2188 2190 2209 C4' G R 75 OK 2211 2208 2210 2232 C4' G R 76 OK 2234 2231 2233 2255 C4' U R 77 OK 2257 2254 2256 2275 C4' A R 78 OK 2277 2274 2276 2297 C4' G R 79 OK 2299 2296 2298 2320 C4' G R 80 OK 2322 2319 2321 2343 C4' U R 81 OK 2345 2342 2344 2363 C4' A R 82 OK 2365 2362 2364 2385 C4' G R 83 OK 2387 2384 2386 2408 C4' C R 84 OK 2410 2407 2409 2428 C4' G R 85 OK 2430 2427 2429 2451 C4' G R 86 OK 2453 2450 2452 2474 C4' G R 87 OK 2476 2473 2475 2497 C4' G R 88 OK 2499 2496 2498 2520 C4' U R 89 OK 2522 2519 2521 2540 C4' U R 90 OK 2542 2539 2541 2560 C4' A R 91 OK 2562 2559 2561 2582 C4' C R 92 OK 2584 2581 2583 2602 C4' C R 93 OK 2604 2601 2603 2622 C4' G R 94 OK 2624 2621 2623 2645 C4' A R 95 OK 2647 2644 2646 2667 C4' U R 96 OK 2669 2666 2668 2687 C4' G R 97 OK 2689 2686 2688 2710 C4' G R 98 OK 2712 2709 2711 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 757 C5' GTP R 8 756 758 780 C5' G R 9 779 781 803 C5' U R 10 802 804 823 C5' C R 11 822 824 843 C5' A R 12 842 844 865 C5' C R 13 864 866 885 C5' G R 14 884 886 908 C5' C R 15 907 909 928 C5' A R 16 927 929 950 C5' C R 17 949 951 970 C5' A R 18 969 971 992 C5' G R 19 991 993 1015 C5' G R 20 1014 1016 1038 C5' G R 21 1037 1039 1061 C5' C R 22 1060 1062 1081 C5' A R 23 1080 1082 1103 C5' A R 24 1102 1104 1125 C5' A R 25 1124 1126 1147 C5' C R 26 1146 1148 1167 C5' C R 27 1166 1168 1187 C5' A R 28 1186 1188 1209 C5' U R 29 1208 1210 1229 C5' U R 30 1228 1230 1249 C5' C R 31 1248 1250 1269 C5' G R 32 1268 1270 1292 C5' A R 33 1291 1293 1314 C5' A R 34 1313 1315 1336 C5' A R 35 1335 1337 1358 C5' G R 36 1357 1359 1381 C5' A R 37 1380 1382 1403 C5' G R 38 1402 1404 1426 C5' U R 39 1425 1427 1446 C5' G R 40 1445 1447 1469 C5' G R 41 1468 1470 1492 C5' G R 42 1491 1493 1515 C5' A R 43 1514 1516 1537 C5' C R 44 1536 1538 1557 C5' G R 45 1556 1558 1580 C5' C R 46 1579 1581 1600 C5' A R 47 1599 1601 1622 C5' A R 48 1621 1623 1644 C5' A R 49 1643 1645 1666 C5' G R 50 1665 1667 1689 C5' C R 51 1688 1690 1709 C5' C R 52 1708 1710 1729 C5' U R 53 1728 1730 1749 C5' C R 54 1748 1750 1769 C5' C R 55 1768 1770 1789 C5' G R 56 1788 1790 1812 C5' G R 57 1811 1813 1835 C5' C R 58 1834 1836 1855 C5' C R 59 1854 1856 1875 C5' U R 60 1874 1876 1895 C5' A R 61 1894 1896 1917 C5' A R 62 1916 1918 1939 C5' A R 63 1938 1940 1961 C5' C R 64 1960 1962 1981 C5' C R 65 1980 1982 2001 C5' A R 660 2000 2002 2023 C5' U R 661 2022 2024 2043 C5' U R 662 2042 2044 2063 C5' G R 663 2062 2064 2086 C5' C R 664 2085 2087 2106 C5' A R 665 2105 2107 2128 C5' C R 666 2127 2129 2148 C5' U R 667 2147 2149 2168 C5' C R 668 2167 2169 2188 C5' C R 669 2187 2189 2208 C5' G R 75 2207 2209 2231 C5' G R 76 2230 2232 2254 C5' U R 77 2253 2255 2274 C5' A R 78 2273 2275 2296 C5' G R 79 2295 2297 2319 C5' G R 80 2318 2320 2342 C5' U R 81 2341 2343 2362 C5' A R 82 2361 2363 2384 C5' G R 83 2383 2385 2407 C5' C R 84 2406 2408 2427 C5' G R 85 2426 2428 2450 C5' G R 86 2449 2451 2473 C5' G R 87 2472 2474 2496 C5' G R 88 2495 2497 2519 C5' U R 89 2518 2520 2539 C5' U R 90 2538 2540 2559 C5' A R 91 2558 2560 2581 C5' C R 92 2580 2582 2601 C5' C R 93 2600 2602 2621 C5' G R 94 2620 2622 2644 C5' A R 95 2643 2645 2666 C5' U R 96 2665 2667 2686 C5' G R 97 2685 2687 2709 C5' G R 98 2708 2710 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 776 P G R 9 distorted distorted 761 777 778 779 799 P U R 10 distorted distorted 784 800 801 802 819 P C R 11 distorted distorted 807 820 821 822 839 P A R 12 distorted distorted 827 840 841 842 861 P C R 13 distorted distorted 847 862 863 864 881 P G R 14 distorted distorted 869 882 883 884 904 P C R 15 distorted distorted 889 905 906 907 924 P A R 16 distorted distorted 912 925 926 927 946 P C R 17 distorted distorted 932 947 948 949 966 P A R 18 distorted distorted 954 967 968 969 988 P G R 19 distorted distorted 974 989 990 991 1011 P G R 20 distorted distorted 996 1012 1013 1014 1034 P G R 21 distorted distorted 1019 1035 1036 1037 1057 P C R 22 distorted distorted 1042 1058 1059 1060 1077 P A R 23 distorted distorted 1065 1078 1079 1080 1099 P A R 24 distorted distorted 1085 1100 1101 1102 1121 P A R 25 distorted distorted 1107 1122 1123 1124 1143 P C R 26 distorted distorted 1129 1144 1145 1146 1163 P C R 27 distorted distorted 1151 1164 1165 1166 1183 P A R 28 distorted distorted 1171 1184 1185 1186 1205 P U R 29 distorted distorted 1191 1206 1207 1208 1225 P U R 30 distorted distorted 1213 1226 1227 1228 1245 P C R 31 distorted distorted 1233 1246 1247 1248 1265 P G R 32 distorted distorted 1253 1266 1267 1268 1288 P A R 33 distorted distorted 1273 1289 1290 1291 1310 P A R 34 distorted distorted 1296 1311 1312 1313 1332 P A R 35 distorted distorted 1318 1333 1334 1335 1354 P G R 36 distorted distorted 1340 1355 1356 1357 1377 P A R 37 distorted distorted 1362 1378 1379 1380 1399 P G R 38 distorted distorted 1385 1400 1401 1402 1422 P U R 39 distorted distorted 1407 1423 1424 1425 1442 P G R 40 distorted distorted 1430 1443 1444 1445 1465 P G R 41 distorted distorted 1450 1466 1467 1468 1488 P G R 42 distorted distorted 1473 1489 1490 1491 1511 P A R 43 distorted distorted 1496 1512 1513 1514 1533 P C R 44 distorted distorted 1519 1534 1535 1536 1553 P G R 45 distorted distorted 1541 1554 1555 1556 1576 P C R 46 distorted distorted 1561 1577 1578 1579 1596 P A R 47 distorted distorted 1584 1597 1598 1599 1618 P A R 48 distorted distorted 1604 1619 1620 1621 1640 P A R 49 distorted distorted 1626 1641 1642 1643 1662 P G R 50 distorted distorted 1648 1663 1664 1665 1685 P C R 51 distorted distorted 1670 1686 1687 1688 1705 P C R 52 distorted distorted 1693 1706 1707 1708 1725 P U R 53 distorted distorted 1713 1726 1727 1728 1745 P C R 54 distorted distorted 1733 1746 1747 1748 1765 P C R 55 distorted distorted 1753 1766 1767 1768 1785 P G R 56 distorted distorted 1773 1786 1787 1788 1808 P G R 57 distorted distorted 1793 1809 1810 1811 1831 P C R 58 distorted distorted 1816 1832 1833 1834 1851 P C R 59 distorted distorted 1839 1852 1853 1854 1871 P U R 60 distorted distorted 1859 1872 1873 1874 1891 P A R 61 distorted distorted 1879 1892 1893 1894 1913 P A R 62 distorted distorted 1899 1914 1915 1916 1935 P A R 63 distorted distorted 1921 1936 1937 1938 1957 P C R 64 distorted distorted 1943 1958 1959 1960 1977 P C R 65 distorted distorted 1965 1978 1979 1980 1997 P A R 660 distorted distorted 1985 1998 1999 2000 2019 P U R 661 distorted distorted 2005 2020 2021 2022 2039 P U R 662 distorted distorted 2027 2040 2041 2042 2059 P G R 663 distorted distorted 2047 2060 2061 2062 2082 P C R 664 distorted distorted 2067 2083 2084 2085 2102 P A R 665 distorted distorted 2090 2103 2104 2105 2124 P C R 666 distorted distorted 2110 2125 2126 2127 2144 P U R 667 distorted distorted 2132 2145 2146 2147 2164 P C R 668 distorted distorted 2152 2165 2166 2167 2184 P C R 669 distorted distorted 2172 2185 2186 2187 2204 P G R 75 distorted distorted 2192 2205 2206 2207 2227 P G R 76 distorted distorted 2212 2228 2229 2230 2250 P U R 77 distorted distorted 2235 2251 2252 2253 2270 P A R 78 distorted distorted 2258 2271 2272 2273 2292 P G R 79 distorted distorted 2278 2293 2294 2295 2315 P G R 80 distorted distorted 2300 2316 2317 2318 2338 P U R 81 distorted distorted 2323 2339 2340 2341 2358 P A R 82 distorted distorted 2346 2359 2360 2361 2380 P G R 83 distorted distorted 2366 2381 2382 2383 2403 P C R 84 distorted distorted 2388 2404 2405 2406 2423 P G R 85 distorted distorted 2411 2424 2425 2426 2446 P G R 86 distorted distorted 2431 2447 2448 2449 2469 P G R 87 distorted distorted 2454 2470 2471 2472 2492 P G R 88 distorted distorted 2477 2493 2494 2495 2515 P U R 89 distorted distorted 2500 2516 2517 2518 2535 P U R 90 distorted distorted 2523 2536 2537 2538 2555 P A R 91 distorted distorted 2543 2556 2557 2558 2577 P C R 92 distorted distorted 2563 2578 2579 2580 2597 P C R 93 distorted distorted 2585 2598 2599 2600 2617 P G R 94 distorted distorted 2605 2618 2619 2620 2640 P A R 95 distorted distorted 2625 2641 2642 2643 2662 P U R 96 distorted distorted 2648 2663 2664 2665 2682 P G R 97 distorted distorted 2670 2683 2684 2685 2705 P G R 98 distorted distorted 2690 2706 2707 2708 2769 P G D 2 2770 P G D 2 ---------------------------------------------------------------------------------