ID code: '3TRZ' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 5979 C1' GMP U 1 beta 5974 5980 5977 6002 C1' G U 2 beta 5997 6003 6000 6025 C1' G U 3 beta 6020 6026 6023 6048 C1' C U 4 beta 6043 6049 6046 6068 C1' A U 5 beta 6063 6069 6066 6090 C1' G U 6 beta 6085 6091 6088 6113 C1' G U 7 beta 6108 6114 6111 6136 C1' G U 8 beta 6131 6137 6134 6159 C1' A U 9 beta 6154 6160 6157 6181 C1' U U 10 beta 6176 6182 6179 6201 C1' U U 11 beta 6196 6202 6199 6221 C1' U U 12 beta 6216 6222 6219 6241 C1' U U 13 beta 6236 6242 6239 6261 C1' G U 14 beta 6256 6262 6259 6284 C1' C U 15 beta 6279 6285 6282 6304 C1' C U 16 beta 6299 6305 6302 6324 C1' C U 17 beta 6319 6325 6322 6344 C1' G U 18 beta 6339 6345 6342 6367 C1' G U 19 beta 6362 6368 6365 6390 C1' A U 20 beta 6385 6391 6388 6412 C1' G U 21 beta 6407 6413 6410 6433 C1' GMP V 1 beta 6428 6434 6431 6456 C1' G V 2 beta 6451 6457 6454 6479 C1' G V 3 beta 6474 6480 6477 6502 C1' C V 4 beta 6497 6503 6500 6522 C1' A V 5 beta 6517 6523 6520 6544 C1' G V 6 beta 6539 6545 6542 6567 C1' G V 7 beta 6562 6568 6565 6590 C1' G V 8 beta 6585 6591 6588 6613 C1' A V 9 beta 6608 6614 6611 6635 C1' U V 10 beta 6630 6636 6633 6655 C1' U V 11 beta 6650 6656 6653 6675 C1' U V 12 beta 6670 6676 6673 6695 C1' U V 13 beta 6690 6696 6693 6715 C1' G V 14 beta 6710 6716 6713 6738 C1' C V 15 beta 6733 6739 6736 6758 C1' C V 16 beta 6753 6759 6756 6778 C1' C V 17 beta 6773 6779 6776 6798 C1' G V 18 beta 6793 6799 6796 6821 C1' G V 19 beta 6816 6822 6819 6844 C1' A V 20 beta 6839 6845 6842 6866 C1' G V 21 beta 6861 6867 6864 6887 C1' GMP W 1 beta 6882 6888 6885 6910 C1' G W 2 beta 6905 6911 6908 6933 C1' G W 3 beta 6928 6934 6931 6956 C1' C W 4 beta 6951 6957 6954 6976 C1' A W 5 beta 6971 6977 6974 6998 C1' G W 6 beta 6993 6999 6996 7021 C1' G W 7 beta 7016 7022 7019 7044 C1' G W 8 beta 7039 7045 7042 7067 C1' A W 9 beta 7062 7068 7065 7089 C1' U W 10 beta 7084 7090 7087 7109 C1' U W 11 beta 7104 7110 7107 7129 C1' U W 12 beta 7124 7130 7127 7149 C1' U W 13 beta 7144 7150 7147 7169 C1' G W 14 beta 7164 7170 7167 7192 C1' C W 15 beta 7187 7193 7190 7212 C1' C W 16 beta 7207 7213 7210 7232 C1' C W 17 beta 7227 7233 7230 7252 C1' G W 18 beta 7247 7253 7250 7275 C1' G W 19 beta 7270 7276 7273 7298 C1' A W 20 beta 7293 7299 7296 7320 C1' G W 21 beta 7315 7321 7318 7341 C1' GMP X 1 beta 7336 7342 7339 7364 C1' G X 2 beta 7359 7365 7362 7387 C1' G X 3 beta 7382 7388 7385 7410 C1' C X 4 beta 7405 7411 7408 7430 C1' A X 5 beta 7425 7431 7428 7452 C1' G X 6 beta 7447 7453 7450 7475 C1' G X 7 beta 7470 7476 7473 7498 C1' G X 8 beta 7493 7499 7496 7521 C1' A X 9 beta 7516 7522 7519 7543 C1' U X 10 beta 7538 7544 7541 7563 C1' U X 11 beta 7558 7564 7561 7583 C1' U X 12 beta 7578 7584 7581 7603 C1' U X 13 beta 7598 7604 7601 7623 C1' G X 14 beta 7618 7624 7621 7646 C1' C X 15 beta 7641 7647 7644 7666 C1' C X 16 beta 7661 7667 7664 7686 C1' C X 17 beta 7681 7687 7684 7706 C1' G X 18 beta 7701 7707 7704 7729 C1' G X 19 beta 7724 7730 7727 7752 C1' A X 20 beta 7747 7753 7750 7774 C1' G X 21 beta 7769 7775 7772 7795 C1' GMP Y 1 beta 7790 7796 7793 7818 C1' G Y 2 beta 7813 7819 7816 7841 C1' G Y 3 beta 7836 7842 7839 7864 C1' C Y 4 beta 7859 7865 7862 7884 C1' A Y 5 beta 7879 7885 7882 7906 C1' G Y 6 beta 7901 7907 7904 7929 C1' G Y 7 beta 7924 7930 7927 7952 C1' G Y 8 beta 7947 7953 7950 7975 C1' A Y 9 beta 7970 7976 7973 7997 C1' U Y 10 beta 7992 7998 7995 8017 C1' U Y 11 beta 8012 8018 8015 8037 C1' U Y 12 beta 8032 8038 8035 8057 C1' U Y 13 beta 8052 8058 8055 8077 C1' G Y 14 beta 8072 8078 8075 8100 C1' C Y 15 beta 8095 8101 8098 8120 C1' C Y 16 beta 8115 8121 8118 8140 C1' C Y 17 beta 8135 8141 8138 8160 C1' G Y 18 beta 8155 8161 8158 8183 C1' G Y 19 beta 8178 8184 8181 8206 C1' A Y 20 beta 8201 8207 8204 8228 C1' G Y 21 beta 8223 8229 8226 8249 C1' GMP Z 1 beta 8244 8250 8247 8272 C1' G Z 2 beta 8267 8273 8270 8295 C1' G Z 3 beta 8290 8296 8293 8318 C1' C Z 4 beta 8313 8319 8316 8338 C1' A Z 5 beta 8333 8339 8336 8360 C1' G Z 6 beta 8355 8361 8358 8383 C1' G Z 7 beta 8378 8384 8381 8406 C1' G Z 8 beta 8401 8407 8404 8429 C1' A Z 9 beta 8424 8430 8427 8451 C1' U Z 10 beta 8446 8452 8449 8471 C1' U Z 11 beta 8466 8472 8469 8491 C1' U Z 12 beta 8486 8492 8489 8511 C1' U Z 13 beta 8506 8512 8509 8531 C1' G Z 14 beta 8526 8532 8529 8554 C1' C Z 15 beta 8549 8555 8552 8574 C1' C Z 16 beta 8569 8575 8572 8594 C1' C Z 17 beta 8589 8595 8592 8614 C1' G Z 18 beta 8609 8615 8612 8637 C1' G Z 19 beta 8632 8638 8635 8660 C1' A Z 20 beta 8655 8661 8658 8682 C1' G Z 21 beta 8677 8683 8680 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 5977 C2' GMP U 1 OK 5979 5975 5978 6000 C2' G U 2 OK 6002 5998 6001 6023 C2' G U 3 OK 6025 6021 6024 6046 C2' C U 4 OK 6048 6044 6047 6066 C2' A U 5 OK 6068 6064 6067 6088 C2' G U 6 OK 6090 6086 6089 6111 C2' G U 7 OK 6113 6109 6112 6134 C2' G U 8 OK 6136 6132 6135 6157 C2' A U 9 OK 6159 6155 6158 6179 C2' U U 10 OK 6181 6177 6180 6199 C2' U U 11 OK 6201 6197 6200 6219 C2' U U 12 OK 6221 6217 6220 6239 C2' U U 13 OK 6241 6237 6240 6259 C2' G U 14 OK 6261 6257 6260 6282 C2' C U 15 OK 6284 6280 6283 6302 C2' C U 16 OK 6304 6300 6303 6322 C2' C U 17 OK 6324 6320 6323 6342 C2' G U 18 OK 6344 6340 6343 6365 C2' G U 19 OK 6367 6363 6366 6388 C2' A U 20 OK 6390 6386 6389 6410 C2' G U 21 OK 6412 6408 6411 6431 C2' GMP V 1 OK 6433 6429 6432 6454 C2' G V 2 OK 6456 6452 6455 6477 C2' G V 3 OK 6479 6475 6478 6500 C2' C V 4 OK 6502 6498 6501 6520 C2' A V 5 OK 6522 6518 6521 6542 C2' G V 6 OK 6544 6540 6543 6565 C2' G V 7 OK 6567 6563 6566 6588 C2' G V 8 OK 6590 6586 6589 6611 C2' A V 9 OK 6613 6609 6612 6633 C2' U V 10 OK 6635 6631 6634 6653 C2' U V 11 OK 6655 6651 6654 6673 C2' U V 12 OK 6675 6671 6674 6693 C2' U V 13 OK 6695 6691 6694 6713 C2' G V 14 OK 6715 6711 6714 6736 C2' C V 15 OK 6738 6734 6737 6756 C2' C V 16 OK 6758 6754 6757 6776 C2' C V 17 OK 6778 6774 6777 6796 C2' G V 18 OK 6798 6794 6797 6819 C2' G V 19 OK 6821 6817 6820 6842 C2' A V 20 OK 6844 6840 6843 6864 C2' G V 21 OK 6866 6862 6865 6885 C2' GMP W 1 OK 6887 6883 6886 6908 C2' G W 2 OK 6910 6906 6909 6931 C2' G W 3 OK 6933 6929 6932 6954 C2' C W 4 OK 6956 6952 6955 6974 C2' A W 5 OK 6976 6972 6975 6996 C2' G W 6 OK 6998 6994 6997 7019 C2' G W 7 OK 7021 7017 7020 7042 C2' G W 8 OK 7044 7040 7043 7065 C2' A W 9 OK 7067 7063 7066 7087 C2' U W 10 OK 7089 7085 7088 7107 C2' U W 11 OK 7109 7105 7108 7127 C2' U W 12 OK 7129 7125 7128 7147 C2' U W 13 OK 7149 7145 7148 7167 C2' G W 14 OK 7169 7165 7168 7190 C2' C W 15 OK 7192 7188 7191 7210 C2' C W 16 OK 7212 7208 7211 7230 C2' C W 17 OK 7232 7228 7231 7250 C2' G W 18 OK 7252 7248 7251 7273 C2' G W 19 OK 7275 7271 7274 7296 C2' A W 20 OK 7298 7294 7297 7318 C2' G W 21 OK 7320 7316 7319 7339 C2' GMP X 1 OK 7341 7337 7340 7362 C2' G X 2 OK 7364 7360 7363 7385 C2' G X 3 OK 7387 7383 7386 7408 C2' C X 4 OK 7410 7406 7409 7428 C2' A X 5 OK 7430 7426 7429 7450 C2' G X 6 OK 7452 7448 7451 7473 C2' G X 7 OK 7475 7471 7474 7496 C2' G X 8 OK 7498 7494 7497 7519 C2' A X 9 OK 7521 7517 7520 7541 C2' U X 10 OK 7543 7539 7542 7561 C2' U X 11 OK 7563 7559 7562 7581 C2' U X 12 OK 7583 7579 7582 7601 C2' U X 13 OK 7603 7599 7602 7621 C2' G X 14 OK 7623 7619 7622 7644 C2' C X 15 OK 7646 7642 7645 7664 C2' C X 16 OK 7666 7662 7665 7684 C2' C X 17 OK 7686 7682 7685 7704 C2' G X 18 OK 7706 7702 7705 7727 C2' G X 19 OK 7729 7725 7728 7750 C2' A X 20 OK 7752 7748 7751 7772 C2' G X 21 OK 7774 7770 7773 7793 C2' GMP Y 1 OK 7795 7791 7794 7816 C2' G Y 2 OK 7818 7814 7817 7839 C2' G Y 3 OK 7841 7837 7840 7862 C2' C Y 4 OK 7864 7860 7863 7882 C2' A Y 5 OK 7884 7880 7883 7904 C2' G Y 6 OK 7906 7902 7905 7927 C2' G Y 7 OK 7929 7925 7928 7950 C2' G Y 8 OK 7952 7948 7951 7973 C2' A Y 9 OK 7975 7971 7974 7995 C2' U Y 10 OK 7997 7993 7996 8015 C2' U Y 11 OK 8017 8013 8016 8035 C2' U Y 12 OK 8037 8033 8036 8055 C2' U Y 13 OK 8057 8053 8056 8075 C2' G Y 14 OK 8077 8073 8076 8098 C2' C Y 15 OK 8100 8096 8099 8118 C2' C Y 16 OK 8120 8116 8119 8138 C2' C Y 17 OK 8140 8136 8139 8158 C2' G Y 18 OK 8160 8156 8159 8181 C2' G Y 19 OK 8183 8179 8182 8204 C2' A Y 20 OK 8206 8202 8205 8226 C2' G Y 21 OK 8228 8224 8227 8247 C2' GMP Z 1 OK 8249 8245 8248 8270 C2' G Z 2 OK 8272 8268 8271 8293 C2' G Z 3 OK 8295 8291 8294 8316 C2' C Z 4 OK 8318 8314 8317 8336 C2' A Z 5 OK 8338 8334 8337 8358 C2' G Z 6 OK 8360 8356 8359 8381 C2' G Z 7 OK 8383 8379 8382 8404 C2' G Z 8 OK 8406 8402 8405 8427 C2' A Z 9 OK 8429 8425 8428 8449 C2' U Z 10 OK 8451 8447 8450 8469 C2' U Z 11 OK 8471 8467 8470 8489 C2' U Z 12 OK 8491 8487 8490 8509 C2' U Z 13 OK 8511 8507 8510 8529 C2' G Z 14 OK 8531 8527 8530 8552 C2' C Z 15 OK 8554 8550 8553 8572 C2' C Z 16 OK 8574 8570 8573 8592 C2' C Z 17 OK 8594 8590 8593 8612 C2' G Z 18 OK 8614 8610 8613 8635 C2' G Z 19 OK 8637 8633 8636 8658 C2' A Z 20 OK 8660 8656 8659 8680 C2' G Z 21 OK 8682 8678 8681 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 5975 C3' GMP U 1 OK 5973 5976 5977 5998 C3' G U 2 OK 5996 5999 6000 6021 C3' G U 3 OK 6019 6022 6023 6044 C3' C U 4 OK 6042 6045 6046 6064 C3' A U 5 OK 6062 6065 6066 6086 C3' G U 6 OK 6084 6087 6088 6109 C3' G U 7 OK 6107 6110 6111 6132 C3' G U 8 OK 6130 6133 6134 6155 C3' A U 9 OK 6153 6156 6157 6177 C3' U U 10 OK 6175 6178 6179 6197 C3' U U 11 OK 6195 6198 6199 6217 C3' U U 12 OK 6215 6218 6219 6237 C3' U U 13 OK 6235 6238 6239 6257 C3' G U 14 OK 6255 6258 6259 6280 C3' C U 15 OK 6278 6281 6282 6300 C3' C U 16 OK 6298 6301 6302 6320 C3' C U 17 OK 6318 6321 6322 6340 C3' G U 18 OK 6338 6341 6342 6363 C3' G U 19 OK 6361 6364 6365 6386 C3' A U 20 OK 6384 6387 6388 6408 C3' G U 21 OK 6406 6409 6410 6429 C3' GMP V 1 OK 6427 6430 6431 6452 C3' G V 2 OK 6450 6453 6454 6475 C3' G V 3 OK 6473 6476 6477 6498 C3' C V 4 OK 6496 6499 6500 6518 C3' A V 5 OK 6516 6519 6520 6540 C3' G V 6 OK 6538 6541 6542 6563 C3' G V 7 OK 6561 6564 6565 6586 C3' G V 8 OK 6584 6587 6588 6609 C3' A V 9 OK 6607 6610 6611 6631 C3' U V 10 OK 6629 6632 6633 6651 C3' U V 11 OK 6649 6652 6653 6671 C3' U V 12 OK 6669 6672 6673 6691 C3' U V 13 OK 6689 6692 6693 6711 C3' G V 14 OK 6709 6712 6713 6734 C3' C V 15 OK 6732 6735 6736 6754 C3' C V 16 OK 6752 6755 6756 6774 C3' C V 17 OK 6772 6775 6776 6794 C3' G V 18 OK 6792 6795 6796 6817 C3' G V 19 OK 6815 6818 6819 6840 C3' A V 20 OK 6838 6841 6842 6862 C3' G V 21 OK 6860 6863 6864 6883 C3' GMP W 1 OK 6881 6884 6885 6906 C3' G W 2 OK 6904 6907 6908 6929 C3' G W 3 OK 6927 6930 6931 6952 C3' C W 4 OK 6950 6953 6954 6972 C3' A W 5 OK 6970 6973 6974 6994 C3' G W 6 OK 6992 6995 6996 7017 C3' G W 7 OK 7015 7018 7019 7040 C3' G W 8 OK 7038 7041 7042 7063 C3' A W 9 OK 7061 7064 7065 7085 C3' U W 10 OK 7083 7086 7087 7105 C3' U W 11 OK 7103 7106 7107 7125 C3' U W 12 OK 7123 7126 7127 7145 C3' U W 13 OK 7143 7146 7147 7165 C3' G W 14 OK 7163 7166 7167 7188 C3' C W 15 OK 7186 7189 7190 7208 C3' C W 16 OK 7206 7209 7210 7228 C3' C W 17 OK 7226 7229 7230 7248 C3' G W 18 OK 7246 7249 7250 7271 C3' G W 19 OK 7269 7272 7273 7294 C3' A W 20 OK 7292 7295 7296 7316 C3' G W 21 OK 7314 7317 7318 7337 C3' GMP X 1 OK 7335 7338 7339 7360 C3' G X 2 OK 7358 7361 7362 7383 C3' G X 3 OK 7381 7384 7385 7406 C3' C X 4 OK 7404 7407 7408 7426 C3' A X 5 OK 7424 7427 7428 7448 C3' G X 6 OK 7446 7449 7450 7471 C3' G X 7 OK 7469 7472 7473 7494 C3' G X 8 OK 7492 7495 7496 7517 C3' A X 9 OK 7515 7518 7519 7539 C3' U X 10 OK 7537 7540 7541 7559 C3' U X 11 OK 7557 7560 7561 7579 C3' U X 12 OK 7577 7580 7581 7599 C3' U X 13 OK 7597 7600 7601 7619 C3' G X 14 OK 7617 7620 7621 7642 C3' C X 15 OK 7640 7643 7644 7662 C3' C X 16 OK 7660 7663 7664 7682 C3' C X 17 OK 7680 7683 7684 7702 C3' G X 18 OK 7700 7703 7704 7725 C3' G X 19 OK 7723 7726 7727 7748 C3' A X 20 OK 7746 7749 7750 7770 C3' G X 21 OK 7768 7771 7772 7791 C3' GMP Y 1 OK 7789 7792 7793 7814 C3' G Y 2 OK 7812 7815 7816 7837 C3' G Y 3 OK 7835 7838 7839 7860 C3' C Y 4 OK 7858 7861 7862 7880 C3' A Y 5 OK 7878 7881 7882 7902 C3' G Y 6 OK 7900 7903 7904 7925 C3' G Y 7 OK 7923 7926 7927 7948 C3' G Y 8 OK 7946 7949 7950 7971 C3' A Y 9 OK 7969 7972 7973 7993 C3' U Y 10 OK 7991 7994 7995 8013 C3' U Y 11 OK 8011 8014 8015 8033 C3' U Y 12 OK 8031 8034 8035 8053 C3' U Y 13 OK 8051 8054 8055 8073 C3' G Y 14 OK 8071 8074 8075 8096 C3' C Y 15 OK 8094 8097 8098 8116 C3' C Y 16 OK 8114 8117 8118 8136 C3' C Y 17 OK 8134 8137 8138 8156 C3' G Y 18 OK 8154 8157 8158 8179 C3' G Y 19 OK 8177 8180 8181 8202 C3' A Y 20 OK 8200 8203 8204 8224 C3' G Y 21 OK 8222 8225 8226 8245 C3' GMP Z 1 OK 8243 8246 8247 8268 C3' G Z 2 OK 8266 8269 8270 8291 C3' G Z 3 OK 8289 8292 8293 8314 C3' C Z 4 OK 8312 8315 8316 8334 C3' A Z 5 OK 8332 8335 8336 8356 C3' G Z 6 OK 8354 8357 8358 8379 C3' G Z 7 OK 8377 8380 8381 8402 C3' G Z 8 OK 8400 8403 8404 8425 C3' A Z 9 OK 8423 8426 8427 8447 C3' U Z 10 OK 8445 8448 8449 8467 C3' U Z 11 OK 8465 8468 8469 8487 C3' U Z 12 OK 8485 8488 8489 8507 C3' U Z 13 OK 8505 8508 8509 8527 C3' G Z 14 OK 8525 8528 8529 8550 C3' C Z 15 OK 8548 8551 8552 8570 C3' C Z 16 OK 8568 8571 8572 8590 C3' C Z 17 OK 8588 8591 8592 8610 C3' G Z 18 OK 8608 8611 8612 8633 C3' G Z 19 OK 8631 8634 8635 8656 C3' A Z 20 OK 8654 8657 8658 8678 C3' G Z 21 OK 8676 8679 8680 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 5973 C4' GMP U 1 OK 5975 5972 5974 5996 C4' G U 2 OK 5998 5995 5997 6019 C4' G U 3 OK 6021 6018 6020 6042 C4' C U 4 OK 6044 6041 6043 6062 C4' A U 5 OK 6064 6061 6063 6084 C4' G U 6 OK 6086 6083 6085 6107 C4' G U 7 OK 6109 6106 6108 6130 C4' G U 8 OK 6132 6129 6131 6153 C4' A U 9 OK 6155 6152 6154 6175 C4' U U 10 OK 6177 6174 6176 6195 C4' U U 11 OK 6197 6194 6196 6215 C4' U U 12 OK 6217 6214 6216 6235 C4' U U 13 OK 6237 6234 6236 6255 C4' G U 14 OK 6257 6254 6256 6278 C4' C U 15 OK 6280 6277 6279 6298 C4' C U 16 OK 6300 6297 6299 6318 C4' C U 17 OK 6320 6317 6319 6338 C4' G U 18 OK 6340 6337 6339 6361 C4' G U 19 OK 6363 6360 6362 6384 C4' A U 20 OK 6386 6383 6385 6406 C4' G U 21 OK 6408 6405 6407 6427 C4' GMP V 1 OK 6429 6426 6428 6450 C4' G V 2 OK 6452 6449 6451 6473 C4' G V 3 OK 6475 6472 6474 6496 C4' C V 4 OK 6498 6495 6497 6516 C4' A V 5 OK 6518 6515 6517 6538 C4' G V 6 OK 6540 6537 6539 6561 C4' G V 7 OK 6563 6560 6562 6584 C4' G V 8 OK 6586 6583 6585 6607 C4' A V 9 OK 6609 6606 6608 6629 C4' U V 10 OK 6631 6628 6630 6649 C4' U V 11 OK 6651 6648 6650 6669 C4' U V 12 OK 6671 6668 6670 6689 C4' U V 13 OK 6691 6688 6690 6709 C4' G V 14 OK 6711 6708 6710 6732 C4' C V 15 OK 6734 6731 6733 6752 C4' C V 16 OK 6754 6751 6753 6772 C4' C V 17 OK 6774 6771 6773 6792 C4' G V 18 OK 6794 6791 6793 6815 C4' G V 19 OK 6817 6814 6816 6838 C4' A V 20 OK 6840 6837 6839 6860 C4' G V 21 OK 6862 6859 6861 6881 C4' GMP W 1 OK 6883 6880 6882 6904 C4' G W 2 OK 6906 6903 6905 6927 C4' G W 3 OK 6929 6926 6928 6950 C4' C W 4 OK 6952 6949 6951 6970 C4' A W 5 OK 6972 6969 6971 6992 C4' G W 6 OK 6994 6991 6993 7015 C4' G W 7 OK 7017 7014 7016 7038 C4' G W 8 OK 7040 7037 7039 7061 C4' A W 9 OK 7063 7060 7062 7083 C4' U W 10 OK 7085 7082 7084 7103 C4' U W 11 OK 7105 7102 7104 7123 C4' U W 12 OK 7125 7122 7124 7143 C4' U W 13 OK 7145 7142 7144 7163 C4' G W 14 OK 7165 7162 7164 7186 C4' C W 15 OK 7188 7185 7187 7206 C4' C W 16 OK 7208 7205 7207 7226 C4' C W 17 OK 7228 7225 7227 7246 C4' G W 18 OK 7248 7245 7247 7269 C4' G W 19 OK 7271 7268 7270 7292 C4' A W 20 OK 7294 7291 7293 7314 C4' G W 21 OK 7316 7313 7315 7335 C4' GMP X 1 OK 7337 7334 7336 7358 C4' G X 2 OK 7360 7357 7359 7381 C4' G X 3 OK 7383 7380 7382 7404 C4' C X 4 OK 7406 7403 7405 7424 C4' A X 5 OK 7426 7423 7425 7446 C4' G X 6 OK 7448 7445 7447 7469 C4' G X 7 OK 7471 7468 7470 7492 C4' G X 8 OK 7494 7491 7493 7515 C4' A X 9 OK 7517 7514 7516 7537 C4' U X 10 OK 7539 7536 7538 7557 C4' U X 11 OK 7559 7556 7558 7577 C4' U X 12 OK 7579 7576 7578 7597 C4' U X 13 OK 7599 7596 7598 7617 C4' G X 14 OK 7619 7616 7618 7640 C4' C X 15 OK 7642 7639 7641 7660 C4' C X 16 OK 7662 7659 7661 7680 C4' C X 17 OK 7682 7679 7681 7700 C4' G X 18 OK 7702 7699 7701 7723 C4' G X 19 OK 7725 7722 7724 7746 C4' A X 20 OK 7748 7745 7747 7768 C4' G X 21 OK 7770 7767 7769 7789 C4' GMP Y 1 OK 7791 7788 7790 7812 C4' G Y 2 OK 7814 7811 7813 7835 C4' G Y 3 OK 7837 7834 7836 7858 C4' C Y 4 OK 7860 7857 7859 7878 C4' A Y 5 OK 7880 7877 7879 7900 C4' G Y 6 OK 7902 7899 7901 7923 C4' G Y 7 OK 7925 7922 7924 7946 C4' G Y 8 OK 7948 7945 7947 7969 C4' A Y 9 OK 7971 7968 7970 7991 C4' U Y 10 OK 7993 7990 7992 8011 C4' U Y 11 OK 8013 8010 8012 8031 C4' U Y 12 OK 8033 8030 8032 8051 C4' U Y 13 OK 8053 8050 8052 8071 C4' G Y 14 OK 8073 8070 8072 8094 C4' C Y 15 OK 8096 8093 8095 8114 C4' C Y 16 OK 8116 8113 8115 8134 C4' C Y 17 OK 8136 8133 8135 8154 C4' G Y 18 OK 8156 8153 8155 8177 C4' G Y 19 OK 8179 8176 8178 8200 C4' A Y 20 OK 8202 8199 8201 8222 C4' G Y 21 OK 8224 8221 8223 8243 C4' GMP Z 1 OK 8245 8242 8244 8266 C4' G Z 2 OK 8268 8265 8267 8289 C4' G Z 3 OK 8291 8288 8290 8312 C4' C Z 4 OK 8314 8311 8313 8332 C4' A Z 5 OK 8334 8331 8333 8354 C4' G Z 6 OK 8356 8353 8355 8377 C4' G Z 7 OK 8379 8376 8378 8400 C4' G Z 8 OK 8402 8399 8401 8423 C4' A Z 9 OK 8425 8422 8424 8445 C4' U Z 10 OK 8447 8444 8446 8465 C4' U Z 11 OK 8467 8464 8466 8485 C4' U Z 12 OK 8487 8484 8486 8505 C4' U Z 13 OK 8507 8504 8506 8525 C4' G Z 14 OK 8527 8524 8526 8548 C4' C Z 15 OK 8550 8547 8549 8568 C4' C Z 16 OK 8570 8567 8569 8588 C4' C Z 17 OK 8590 8587 8589 8608 C4' G Z 18 OK 8610 8607 8609 8631 C4' G Z 19 OK 8633 8630 8632 8654 C4' A Z 20 OK 8656 8653 8655 8676 C4' G Z 21 OK 8678 8675 8677 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 5972 C5' GMP U 1 5971 5973 5995 C5' G U 2 5994 5996 6018 C5' G U 3 6017 6019 6041 C5' C U 4 6040 6042 6061 C5' A U 5 6060 6062 6083 C5' G U 6 6082 6084 6106 C5' G U 7 6105 6107 6129 C5' G U 8 6128 6130 6152 C5' A U 9 6151 6153 6174 C5' U U 10 6173 6175 6194 C5' U U 11 6193 6195 6214 C5' U U 12 6213 6215 6234 C5' U U 13 6233 6235 6254 C5' G U 14 6253 6255 6277 C5' C U 15 6276 6278 6297 C5' C U 16 6296 6298 6317 C5' C U 17 6316 6318 6337 C5' G U 18 6336 6338 6360 C5' G U 19 6359 6361 6383 C5' A U 20 6382 6384 6405 C5' G U 21 6404 6406 6426 C5' GMP V 1 6425 6427 6449 C5' G V 2 6448 6450 6472 C5' G V 3 6471 6473 6495 C5' C V 4 6494 6496 6515 C5' A V 5 6514 6516 6537 C5' G V 6 6536 6538 6560 C5' G V 7 6559 6561 6583 C5' G V 8 6582 6584 6606 C5' A V 9 6605 6607 6628 C5' U V 10 6627 6629 6648 C5' U V 11 6647 6649 6668 C5' U V 12 6667 6669 6688 C5' U V 13 6687 6689 6708 C5' G V 14 6707 6709 6731 C5' C V 15 6730 6732 6751 C5' C V 16 6750 6752 6771 C5' C V 17 6770 6772 6791 C5' G V 18 6790 6792 6814 C5' G V 19 6813 6815 6837 C5' A V 20 6836 6838 6859 C5' G V 21 6858 6860 6880 C5' GMP W 1 6879 6881 6903 C5' G W 2 6902 6904 6926 C5' G W 3 6925 6927 6949 C5' C W 4 6948 6950 6969 C5' A W 5 6968 6970 6991 C5' G W 6 6990 6992 7014 C5' G W 7 7013 7015 7037 C5' G W 8 7036 7038 7060 C5' A W 9 7059 7061 7082 C5' U W 10 7081 7083 7102 C5' U W 11 7101 7103 7122 C5' U W 12 7121 7123 7142 C5' U W 13 7141 7143 7162 C5' G W 14 7161 7163 7185 C5' C W 15 7184 7186 7205 C5' C W 16 7204 7206 7225 C5' C W 17 7224 7226 7245 C5' G W 18 7244 7246 7268 C5' G W 19 7267 7269 7291 C5' A W 20 7290 7292 7313 C5' G W 21 7312 7314 7334 C5' GMP X 1 7333 7335 7357 C5' G X 2 7356 7358 7380 C5' G X 3 7379 7381 7403 C5' C X 4 7402 7404 7423 C5' A X 5 7422 7424 7445 C5' G X 6 7444 7446 7468 C5' G X 7 7467 7469 7491 C5' G X 8 7490 7492 7514 C5' A X 9 7513 7515 7536 C5' U X 10 7535 7537 7556 C5' U X 11 7555 7557 7576 C5' U X 12 7575 7577 7596 C5' U X 13 7595 7597 7616 C5' G X 14 7615 7617 7639 C5' C X 15 7638 7640 7659 C5' C X 16 7658 7660 7679 C5' C X 17 7678 7680 7699 C5' G X 18 7698 7700 7722 C5' G X 19 7721 7723 7745 C5' A X 20 7744 7746 7767 C5' G X 21 7766 7768 7788 C5' GMP Y 1 7787 7789 7811 C5' G Y 2 7810 7812 7834 C5' G Y 3 7833 7835 7857 C5' C Y 4 7856 7858 7877 C5' A Y 5 7876 7878 7899 C5' G Y 6 7898 7900 7922 C5' G Y 7 7921 7923 7945 C5' G Y 8 7944 7946 7968 C5' A Y 9 7967 7969 7990 C5' U Y 10 7989 7991 8010 C5' U Y 11 8009 8011 8030 C5' U Y 12 8029 8031 8050 C5' U Y 13 8049 8051 8070 C5' G Y 14 8069 8071 8093 C5' C Y 15 8092 8094 8113 C5' C Y 16 8112 8114 8133 C5' C Y 17 8132 8134 8153 C5' G Y 18 8152 8154 8176 C5' G Y 19 8175 8177 8199 C5' A Y 20 8198 8200 8221 C5' G Y 21 8220 8222 8242 C5' GMP Z 1 8241 8243 8265 C5' G Z 2 8264 8266 8288 C5' G Z 3 8287 8289 8311 C5' C Z 4 8310 8312 8331 C5' A Z 5 8330 8332 8353 C5' G Z 6 8352 8354 8376 C5' G Z 7 8375 8377 8399 C5' G Z 8 8398 8400 8422 C5' A Z 9 8421 8423 8444 C5' U Z 10 8443 8445 8464 C5' U Z 11 8463 8465 8484 C5' U Z 12 8483 8485 8504 C5' U Z 13 8503 8505 8524 C5' G Z 14 8523 8525 8547 C5' C Z 15 8546 8548 8567 C5' C Z 16 8566 8568 8587 C5' C Z 17 8586 8588 8607 C5' G Z 18 8606 8608 8630 C5' G Z 19 8629 8631 8653 C5' A Z 20 8652 8654 8675 C5' G Z 21 8674 8676 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 5991 P G U 2 distorted distorted 5976 5992 5993 5994 6014 P G U 3 distorted distorted 5999 6015 6016 6017 6037 P C U 4 distorted distorted 6022 6038 6039 6040 6057 P A U 5 distorted distorted 6045 6058 6059 6060 6079 P G U 6 distorted distorted 6065 6080 6081 6082 6102 P G U 7 distorted distorted 6087 6103 6104 6105 6125 P G U 8 distorted distorted 6110 6126 6127 6128 6148 P A U 9 distorted distorted 6133 6149 6150 6151 6170 P U U 10 distorted distorted 6156 6171 6172 6173 6190 P U U 11 distorted distorted 6178 6191 6192 6193 6210 P U U 12 distorted distorted 6198 6211 6212 6213 6230 P U U 13 distorted distorted 6218 6231 6232 6233 6250 P G U 14 distorted distorted 6238 6251 6252 6253 6273 P C U 15 distorted distorted 6258 6274 6275 6276 6293 P C U 16 distorted distorted 6281 6294 6295 6296 6313 P C U 17 distorted distorted 6301 6314 6315 6316 6333 P G U 18 distorted distorted 6321 6334 6335 6336 6356 P G U 19 distorted distorted 6341 6357 6358 6359 6379 P A U 20 distorted distorted 6364 6380 6381 6382 6401 P G U 21 distorted distorted 6387 6402 6403 6404 6445 P G V 2 distorted distorted 6430 6446 6447 6448 6468 P G V 3 distorted distorted 6453 6469 6470 6471 6491 P C V 4 distorted distorted 6476 6492 6493 6494 6511 P A V 5 distorted distorted 6499 6512 6513 6514 6533 P G V 6 distorted distorted 6519 6534 6535 6536 6556 P G V 7 distorted distorted 6541 6557 6558 6559 6579 P G V 8 distorted distorted 6564 6580 6581 6582 6602 P A V 9 distorted distorted 6587 6603 6604 6605 6624 P U V 10 distorted distorted 6610 6625 6626 6627 6644 P U V 11 distorted distorted 6632 6645 6646 6647 6664 P U V 12 distorted distorted 6652 6665 6666 6667 6684 P U V 13 distorted distorted 6672 6685 6686 6687 6704 P G V 14 distorted distorted 6692 6705 6706 6707 6727 P C V 15 distorted distorted 6712 6728 6729 6730 6747 P C V 16 distorted distorted 6735 6748 6749 6750 6767 P C V 17 distorted distorted 6755 6768 6769 6770 6787 P G V 18 distorted distorted 6775 6788 6789 6790 6810 P G V 19 distorted distorted 6795 6811 6812 6813 6833 P A V 20 distorted distorted 6818 6834 6835 6836 6855 P G V 21 distorted distorted 6841 6856 6857 6858 6899 P G W 2 distorted distorted 6884 6900 6901 6902 6922 P G W 3 distorted distorted 6907 6923 6924 6925 6945 P C W 4 distorted distorted 6930 6946 6947 6948 6965 P A W 5 distorted distorted 6953 6966 6967 6968 6987 P G W 6 distorted distorted 6973 6988 6989 6990 7010 P G W 7 distorted distorted 6995 7011 7012 7013 7033 P G W 8 distorted distorted 7018 7034 7035 7036 7056 P A W 9 distorted distorted 7041 7057 7058 7059 7078 P U W 10 distorted distorted 7064 7079 7080 7081 7098 P U W 11 distorted distorted 7086 7099 7100 7101 7118 P U W 12 distorted distorted 7106 7119 7120 7121 7138 P U W 13 distorted distorted 7126 7139 7140 7141 7158 P G W 14 distorted distorted 7146 7159 7160 7161 7181 P C W 15 distorted distorted 7166 7182 7183 7184 7201 P C W 16 distorted distorted 7189 7202 7203 7204 7221 P C W 17 distorted distorted 7209 7222 7223 7224 7241 P G W 18 distorted distorted 7229 7242 7243 7244 7264 P G W 19 distorted distorted 7249 7265 7266 7267 7287 P A W 20 distorted distorted 7272 7288 7289 7290 7309 P G W 21 distorted distorted 7295 7310 7311 7312 7353 P G X 2 distorted distorted 7338 7354 7355 7356 7376 P G X 3 distorted distorted 7361 7377 7378 7379 7399 P C X 4 distorted distorted 7384 7400 7401 7402 7419 P A X 5 distorted distorted 7407 7420 7421 7422 7441 P G X 6 distorted distorted 7427 7442 7443 7444 7464 P G X 7 distorted distorted 7449 7465 7466 7467 7487 P G X 8 distorted distorted 7472 7488 7489 7490 7510 P A X 9 distorted distorted 7495 7511 7512 7513 7532 P U X 10 distorted distorted 7518 7533 7534 7535 7552 P U X 11 distorted distorted 7540 7553 7554 7555 7572 P U X 12 distorted distorted 7560 7573 7574 7575 7592 P U X 13 distorted distorted 7580 7593 7594 7595 7612 P G X 14 distorted distorted 7600 7613 7614 7615 7635 P C X 15 distorted distorted 7620 7636 7637 7638 7655 P C X 16 distorted distorted 7643 7656 7657 7658 7675 P C X 17 distorted distorted 7663 7676 7677 7678 7695 P G X 18 distorted distorted 7683 7696 7697 7698 7718 P G X 19 distorted distorted 7703 7719 7720 7721 7741 P A X 20 distorted distorted 7726 7742 7743 7744 7763 P G X 21 distorted distorted 7749 7764 7765 7766 7807 P G Y 2 distorted distorted 7792 7808 7809 7810 7830 P G Y 3 distorted distorted 7815 7831 7832 7833 7853 P C Y 4 distorted distorted 7838 7854 7855 7856 7873 P A Y 5 distorted distorted 7861 7874 7875 7876 7895 P G Y 6 distorted distorted 7881 7896 7897 7898 7918 P G Y 7 distorted distorted 7903 7919 7920 7921 7941 P G Y 8 distorted distorted 7926 7942 7943 7944 7964 P A Y 9 distorted distorted 7949 7965 7966 7967 7986 P U Y 10 distorted distorted 7972 7987 7988 7989 8006 P U Y 11 distorted distorted 7994 8007 8008 8009 8026 P U Y 12 distorted distorted 8014 8027 8028 8029 8046 P U Y 13 distorted distorted 8034 8047 8048 8049 8066 P G Y 14 distorted distorted 8054 8067 8068 8069 8089 P C Y 15 distorted distorted 8074 8090 8091 8092 8109 P C Y 16 distorted distorted 8097 8110 8111 8112 8129 P C Y 17 distorted distorted 8117 8130 8131 8132 8149 P G Y 18 distorted distorted 8137 8150 8151 8152 8172 P G Y 19 distorted distorted 8157 8173 8174 8175 8195 P A Y 20 distorted distorted 8180 8196 8197 8198 8217 P G Y 21 distorted distorted 8203 8218 8219 8220 8261 P G Z 2 distorted distorted 8246 8262 8263 8264 8284 P G Z 3 distorted distorted 8269 8285 8286 8287 8307 P C Z 4 distorted distorted 8292 8308 8309 8310 8327 P A Z 5 distorted distorted 8315 8328 8329 8330 8349 P G Z 6 distorted distorted 8335 8350 8351 8352 8372 P G Z 7 distorted distorted 8357 8373 8374 8375 8395 P G Z 8 distorted distorted 8380 8396 8397 8398 8418 P A Z 9 distorted distorted 8403 8419 8420 8421 8440 P U Z 10 distorted distorted 8426 8441 8442 8443 8460 P U Z 11 distorted distorted 8448 8461 8462 8463 8480 P U Z 12 distorted distorted 8468 8481 8482 8483 8500 P U Z 13 distorted distorted 8488 8501 8502 8503 8520 P G Z 14 distorted distorted 8508 8521 8522 8523 8543 P C Z 15 distorted distorted 8528 8544 8545 8546 8563 P C Z 16 distorted distorted 8551 8564 8565 8566 8583 P C Z 17 distorted distorted 8571 8584 8585 8586 8603 P G Z 18 distorted distorted 8591 8604 8605 8606 8626 P G Z 19 distorted distorted 8611 8627 8628 8629 8649 P A Z 20 distorted distorted 8634 8650 8651 8652 8671 P G Z 21 distorted distorted 8657 8672 8673 8674 ---------------------------------------------------------------------------------