ID code: '3SUX' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 12 C1' G X 1 beta 7 13 10 35 C1' G X 2 beta 30 36 33 58 C1' A X 3 beta 53 59 56 80 C1' C X 4 beta 75 81 78 100 C1' A X 5 beta 95 101 98 122 C1' G X 6 beta 117 123 120 145 C1' A X 7 beta 140 146 143 167 C1' G X 8 beta 162 168 165 190 C1' U X 9 beta 185 191 188 210 C1' A X 10 beta 205 211 208 232 C1' G X 11 beta 227 233 230 255 C1' G X 12 beta 250 256 253 278 C1' U X 13 beta 273 279 276 298 C1' A X 14 beta 293 299 296 320 C1' A X 15 beta 315 321 318 342 C1' A X 16 beta 337 343 340 364 C1' C X 17 beta 359 365 362 384 C1' G X 18 beta 379 385 382 407 C1' U X 19 beta 402 408 405 427 C1' G X 20 beta 422 428 425 450 C1' C X 21 beta 445 451 448 470 C1' G X 22 beta 465 471 468 493 C1' U X 23 beta 488 494 491 513 C1' A X 24 beta 508 514 511 535 C1' A X 25 beta 530 536 533 557 C1' A X 26 beta 552 558 555 579 C1' G X 27 beta 574 580 577 602 C1' U X 28 beta 597 603 600 622 C1' G X 29 beta 617 623 620 645 C1' C X 30 beta 640 646 643 665 C1' C X 31 beta 660 666 663 685 C1' U X 32 beta 680 686 683 705 C1' G X 33 beta 700 706 703 728 C1' A X 34 beta 723 729 726 750 C1' G X 35 beta 745 751 748 773 C1' G X 36 beta 768 774 771 796 C1' G X 37 beta 791 797 794 819 C1' A X 38 beta 814 820 817 841 C1' C X 39 beta 836 842 839 861 C1' G X 40 beta 856 862 859 884 C1' G X 41 beta 879 885 882 907 C1' G X 42 beta 902 908 905 930 C1' G X 43 beta 925 931 928 953 C1' A X 44 beta 948 954 951 975 C1' G X 45 beta 970 976 973 998 C1' U X 46 beta 993 999 996 1018 C1' U X 47 beta 1013 1019 1016 1038 C1' G X 48 beta 1033 1039 1036 1061 C1' U X 49 beta 1056 1062 1059 1081 C1' C X 50 beta 1076 1082 1079 1101 C1' C X 51 beta 1096 1102 1099 1121 C1' U X 52 beta 1116 1122 1119 1141 C1' C X 53 beta 1136 1142 1139 1161 C1' A X 54 beta 1156 1162 1159 1183 C1' G X 55 beta 1178 1184 1181 1206 C1' G X 56 beta 1201 1207 1204 1229 C1' A X 57 beta 1224 1230 1227 1251 C1' C X 58 beta 1246 1252 1249 1271 C1' G X 59 beta 1266 1272 1269 1294 C1' A X 60 beta 1289 1295 1292 1316 C1' A X 61 beta 1311 1317 1314 1338 C1' C X 62 beta 1333 1339 1336 1358 C1' A X 63 beta 1353 1359 1356 1380 C1' C X 64 beta 1375 1381 1378 1400 C1' C X 65 beta 1395 1401 1398 1420 C1' G X 66 beta 1415 1421 1418 1443 C1' A X 67 beta 1438 1444 1441 1465 C1' A X 68 beta 1460 1466 1463 1487 C1' A X 69 beta 1482 1488 1485 1509 C1' G X 70 beta 1504 1510 1507 1532 C1' G X 71 beta 1527 1533 1530 1555 C1' U X 72 beta 1550 1556 1553 1575 C1' G X 73 beta 1570 1576 1573 1598 C1' G X 74 beta 1593 1599 1596 1621 C1' C X 75 beta 1616 1622 1619 1641 C1' G X 76 beta 1636 1642 1639 1664 C1' G X 77 beta 1659 1665 1662 1687 C1' U X 78 beta 1682 1688 1685 1707 C1' A X 79 beta 1702 1708 1705 1729 C1' C X 80 beta 1724 1730 1727 1749 C1' G X 81 beta 1744 1750 1747 1772 C1' U X 82 beta 1767 1773 1770 1792 C1' U X 83 beta 1787 1793 1790 1812 C1' U X 84 beta 1807 1813 1810 1832 C1' A X 85 beta 1827 1833 1830 1854 C1' C X 86 beta 1849 1855 1852 1874 C1' C X 87 beta 1869 1875 1872 1894 C1' G X 88 beta 1889 1895 1892 1917 C1' C X 89 beta 1912 1918 1915 1937 C1' A X 90 beta 1932 1938 1935 1959 C1' U X 91 beta 1954 1960 1957 1979 C1' C X 92 beta 1974 1980 1977 1999 C1' U X 93 beta 1994 2000 1997 2019 C1' C X 94 beta 2014 2020 2017 2039 C1' G X 95 beta 2034 2040 2037 2062 C1' C X 96 beta 2057 2063 2060 2082 C1' U X 97 beta 2077 2083 2080 2102 C1' G X 98 beta 2097 2103 2100 2125 C1' U X 99 beta 2120 2126 2123 2145 C1' U X 100 beta 2140 2146 2143 2168 C1' CCC X 101 beta 2163 2169 2166 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 10 C2' G X 1 OK 12 8 11 33 C2' G X 2 OK 35 31 34 56 C2' A X 3 OK 58 54 57 78 C2' C X 4 OK 80 76 79 98 C2' A X 5 OK 100 96 99 120 C2' G X 6 OK 122 118 121 143 C2' A X 7 OK 145 141 144 165 C2' G X 8 OK 167 163 166 188 C2' U X 9 OK 190 186 189 208 C2' A X 10 OK 210 206 209 230 C2' G X 11 OK 232 228 231 253 C2' G X 12 OK 255 251 254 276 C2' U X 13 OK 278 274 277 296 C2' A X 14 OK 298 294 297 318 C2' A X 15 OK 320 316 319 340 C2' A X 16 OK 342 338 341 362 C2' C X 17 OK 364 360 363 382 C2' G X 18 OK 384 380 383 405 C2' U X 19 OK 407 403 406 425 C2' G X 20 OK 427 423 426 448 C2' C X 21 OK 450 446 449 468 C2' G X 22 OK 470 466 469 491 C2' U X 23 OK 493 489 492 511 C2' A X 24 OK 513 509 512 533 C2' A X 25 OK 535 531 534 555 C2' A X 26 OK 557 553 556 577 C2' G X 27 OK 579 575 578 600 C2' U X 28 OK 602 598 601 620 C2' G X 29 OK 622 618 621 643 C2' C X 30 OK 645 641 644 663 C2' C X 31 OK 665 661 664 683 C2' U X 32 OK 685 681 684 703 C2' G X 33 OK 705 701 704 726 C2' A X 34 OK 728 724 727 748 C2' G X 35 OK 750 746 749 771 C2' G X 36 OK 773 769 772 794 C2' G X 37 OK 796 792 795 817 C2' A X 38 OK 819 815 818 839 C2' C X 39 OK 841 837 840 859 C2' G X 40 OK 861 857 860 882 C2' G X 41 OK 884 880 883 905 C2' G X 42 OK 907 903 906 928 C2' G X 43 OK 930 926 929 951 C2' A X 44 OK 953 949 952 973 C2' G X 45 OK 975 971 974 996 C2' U X 46 OK 998 994 997 1016 C2' U X 47 OK 1018 1014 1017 1036 C2' G X 48 OK 1038 1034 1037 1059 C2' U X 49 OK 1061 1057 1060 1079 C2' C X 50 OK 1081 1077 1080 1099 C2' C X 51 OK 1101 1097 1100 1119 C2' U X 52 OK 1121 1117 1120 1139 C2' C X 53 OK 1141 1137 1140 1159 C2' A X 54 OK 1161 1157 1160 1181 C2' G X 55 OK 1183 1179 1182 1204 C2' G X 56 OK 1206 1202 1205 1227 C2' A X 57 OK 1229 1225 1228 1249 C2' C X 58 OK 1251 1247 1250 1269 C2' G X 59 OK 1271 1267 1270 1292 C2' A X 60 OK 1294 1290 1293 1314 C2' A X 61 OK 1316 1312 1315 1336 C2' C X 62 OK 1338 1334 1337 1356 C2' A X 63 OK 1358 1354 1357 1378 C2' C X 64 OK 1380 1376 1379 1398 C2' C X 65 OK 1400 1396 1399 1418 C2' G X 66 OK 1420 1416 1419 1441 C2' A X 67 OK 1443 1439 1442 1463 C2' A X 68 OK 1465 1461 1464 1485 C2' A X 69 OK 1487 1483 1486 1507 C2' G X 70 OK 1509 1505 1508 1530 C2' G X 71 OK 1532 1528 1531 1553 C2' U X 72 OK 1555 1551 1554 1573 C2' G X 73 OK 1575 1571 1574 1596 C2' G X 74 OK 1598 1594 1597 1619 C2' C X 75 OK 1621 1617 1620 1639 C2' G X 76 OK 1641 1637 1640 1662 C2' G X 77 OK 1664 1660 1663 1685 C2' U X 78 OK 1687 1683 1686 1705 C2' A X 79 OK 1707 1703 1706 1727 C2' C X 80 OK 1729 1725 1728 1747 C2' G X 81 OK 1749 1745 1748 1770 C2' U X 82 OK 1772 1768 1771 1790 C2' U X 83 OK 1792 1788 1791 1810 C2' U X 84 OK 1812 1808 1811 1830 C2' A X 85 OK 1832 1828 1831 1852 C2' C X 86 OK 1854 1850 1853 1872 C2' C X 87 OK 1874 1870 1873 1892 C2' G X 88 OK 1894 1890 1893 1915 C2' C X 89 OK 1917 1913 1916 1935 C2' A X 90 OK 1937 1933 1936 1957 C2' U X 91 OK 1959 1955 1958 1977 C2' C X 92 OK 1979 1975 1978 1997 C2' U X 93 OK 1999 1995 1998 2017 C2' C X 94 OK 2019 2015 2018 2037 C2' G X 95 OK 2039 2035 2038 2060 C2' C X 96 OK 2062 2058 2061 2080 C2' U X 97 OK 2082 2078 2081 2100 C2' G X 98 OK 2102 2098 2101 2123 C2' U X 99 OK 2125 2121 2124 2143 C2' U X 100 OK 2145 2141 2144 2166 C2' CCC X 101 OK 2168 2164 2167 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 8 C3' G X 1 OK 6 9 10 31 C3' G X 2 OK 29 32 33 54 C3' A X 3 OK 52 55 56 76 C3' C X 4 OK 74 77 78 96 C3' A X 5 OK 94 97 98 118 C3' G X 6 OK 116 119 120 141 C3' A X 7 OK 139 142 143 163 C3' G X 8 OK 161 164 165 186 C3' U X 9 OK 184 187 188 206 C3' A X 10 OK 204 207 208 228 C3' G X 11 OK 226 229 230 251 C3' G X 12 OK 249 252 253 274 C3' U X 13 OK 272 275 276 294 C3' A X 14 OK 292 295 296 316 C3' A X 15 OK 314 317 318 338 C3' A X 16 OK 336 339 340 360 C3' C X 17 OK 358 361 362 380 C3' G X 18 OK 378 381 382 403 C3' U X 19 OK 401 404 405 423 C3' G X 20 OK 421 424 425 446 C3' C X 21 OK 444 447 448 466 C3' G X 22 OK 464 467 468 489 C3' U X 23 OK 487 490 491 509 C3' A X 24 OK 507 510 511 531 C3' A X 25 OK 529 532 533 553 C3' A X 26 OK 551 554 555 575 C3' G X 27 OK 573 576 577 598 C3' U X 28 OK 596 599 600 618 C3' G X 29 OK 616 619 620 641 C3' C X 30 OK 639 642 643 661 C3' C X 31 OK 659 662 663 681 C3' U X 32 OK 679 682 683 701 C3' G X 33 OK 699 702 703 724 C3' A X 34 OK 722 725 726 746 C3' G X 35 OK 744 747 748 769 C3' G X 36 OK 767 770 771 792 C3' G X 37 OK 790 793 794 815 C3' A X 38 OK 813 816 817 837 C3' C X 39 OK 835 838 839 857 C3' G X 40 OK 855 858 859 880 C3' G X 41 OK 878 881 882 903 C3' G X 42 OK 901 904 905 926 C3' G X 43 OK 924 927 928 949 C3' A X 44 OK 947 950 951 971 C3' G X 45 OK 969 972 973 994 C3' U X 46 OK 992 995 996 1014 C3' U X 47 OK 1012 1015 1016 1034 C3' G X 48 OK 1032 1035 1036 1057 C3' U X 49 OK 1055 1058 1059 1077 C3' C X 50 OK 1075 1078 1079 1097 C3' C X 51 OK 1095 1098 1099 1117 C3' U X 52 OK 1115 1118 1119 1137 C3' C X 53 OK 1135 1138 1139 1157 C3' A X 54 OK 1155 1158 1159 1179 C3' G X 55 OK 1177 1180 1181 1202 C3' G X 56 OK 1200 1203 1204 1225 C3' A X 57 OK 1223 1226 1227 1247 C3' C X 58 OK 1245 1248 1249 1267 C3' G X 59 OK 1265 1268 1269 1290 C3' A X 60 OK 1288 1291 1292 1312 C3' A X 61 OK 1310 1313 1314 1334 C3' C X 62 OK 1332 1335 1336 1354 C3' A X 63 OK 1352 1355 1356 1376 C3' C X 64 OK 1374 1377 1378 1396 C3' C X 65 OK 1394 1397 1398 1416 C3' G X 66 OK 1414 1417 1418 1439 C3' A X 67 OK 1437 1440 1441 1461 C3' A X 68 OK 1459 1462 1463 1483 C3' A X 69 OK 1481 1484 1485 1505 C3' G X 70 OK 1503 1506 1507 1528 C3' G X 71 OK 1526 1529 1530 1551 C3' U X 72 OK 1549 1552 1553 1571 C3' G X 73 OK 1569 1572 1573 1594 C3' G X 74 OK 1592 1595 1596 1617 C3' C X 75 OK 1615 1618 1619 1637 C3' G X 76 OK 1635 1638 1639 1660 C3' G X 77 OK 1658 1661 1662 1683 C3' U X 78 OK 1681 1684 1685 1703 C3' A X 79 OK 1701 1704 1705 1725 C3' C X 80 OK 1723 1726 1727 1745 C3' G X 81 OK 1743 1746 1747 1768 C3' U X 82 OK 1766 1769 1770 1788 C3' U X 83 OK 1786 1789 1790 1808 C3' U X 84 OK 1806 1809 1810 1828 C3' A X 85 OK 1826 1829 1830 1850 C3' C X 86 OK 1848 1851 1852 1870 C3' C X 87 OK 1868 1871 1872 1890 C3' G X 88 OK 1888 1891 1892 1913 C3' C X 89 OK 1911 1914 1915 1933 C3' A X 90 OK 1931 1934 1935 1955 C3' U X 91 OK 1953 1956 1957 1975 C3' C X 92 OK 1973 1976 1977 1995 C3' U X 93 OK 1993 1996 1997 2015 C3' C X 94 OK 2013 2016 2017 2035 C3' G X 95 OK 2033 2036 2037 2058 C3' C X 96 OK 2056 2059 2060 2078 C3' U X 97 OK 2076 2079 2080 2098 C3' G X 98 OK 2096 2099 2100 2121 C3' U X 99 OK 2119 2122 2123 2141 C3' U X 100 OK 2139 2142 2143 2164 C3' CCC X 101 OK 2162 2165 2166 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 6 C4' G X 1 OK 8 5 7 29 C4' G X 2 OK 31 28 30 52 C4' A X 3 OK 54 51 53 74 C4' C X 4 OK 76 73 75 94 C4' A X 5 OK 96 93 95 116 C4' G X 6 OK 118 115 117 139 C4' A X 7 OK 141 138 140 161 C4' G X 8 OK 163 160 162 184 C4' U X 9 OK 186 183 185 204 C4' A X 10 OK 206 203 205 226 C4' G X 11 OK 228 225 227 249 C4' G X 12 OK 251 248 250 272 C4' U X 13 OK 274 271 273 292 C4' A X 14 OK 294 291 293 314 C4' A X 15 OK 316 313 315 336 C4' A X 16 OK 338 335 337 358 C4' C X 17 OK 360 357 359 378 C4' G X 18 OK 380 377 379 401 C4' U X 19 OK 403 400 402 421 C4' G X 20 OK 423 420 422 444 C4' C X 21 OK 446 443 445 464 C4' G X 22 OK 466 463 465 487 C4' U X 23 OK 489 486 488 507 C4' A X 24 OK 509 506 508 529 C4' A X 25 OK 531 528 530 551 C4' A X 26 OK 553 550 552 573 C4' G X 27 OK 575 572 574 596 C4' U X 28 OK 598 595 597 616 C4' G X 29 OK 618 615 617 639 C4' C X 30 OK 641 638 640 659 C4' C X 31 OK 661 658 660 679 C4' U X 32 OK 681 678 680 699 C4' G X 33 OK 701 698 700 722 C4' A X 34 OK 724 721 723 744 C4' G X 35 OK 746 743 745 767 C4' G X 36 OK 769 766 768 790 C4' G X 37 OK 792 789 791 813 C4' A X 38 OK 815 812 814 835 C4' C X 39 OK 837 834 836 855 C4' G X 40 OK 857 854 856 878 C4' G X 41 OK 880 877 879 901 C4' G X 42 OK 903 900 902 924 C4' G X 43 OK 926 923 925 947 C4' A X 44 OK 949 946 948 969 C4' G X 45 OK 971 968 970 992 C4' U X 46 OK 994 991 993 1012 C4' U X 47 OK 1014 1011 1013 1032 C4' G X 48 OK 1034 1031 1033 1055 C4' U X 49 OK 1057 1054 1056 1075 C4' C X 50 OK 1077 1074 1076 1095 C4' C X 51 OK 1097 1094 1096 1115 C4' U X 52 OK 1117 1114 1116 1135 C4' C X 53 OK 1137 1134 1136 1155 C4' A X 54 OK 1157 1154 1156 1177 C4' G X 55 OK 1179 1176 1178 1200 C4' G X 56 OK 1202 1199 1201 1223 C4' A X 57 OK 1225 1222 1224 1245 C4' C X 58 OK 1247 1244 1246 1265 C4' G X 59 OK 1267 1264 1266 1288 C4' A X 60 OK 1290 1287 1289 1310 C4' A X 61 OK 1312 1309 1311 1332 C4' C X 62 OK 1334 1331 1333 1352 C4' A X 63 OK 1354 1351 1353 1374 C4' C X 64 OK 1376 1373 1375 1394 C4' C X 65 OK 1396 1393 1395 1414 C4' G X 66 OK 1416 1413 1415 1437 C4' A X 67 OK 1439 1436 1438 1459 C4' A X 68 OK 1461 1458 1460 1481 C4' A X 69 OK 1483 1480 1482 1503 C4' G X 70 OK 1505 1502 1504 1526 C4' G X 71 OK 1528 1525 1527 1549 C4' U X 72 OK 1551 1548 1550 1569 C4' G X 73 OK 1571 1568 1570 1592 C4' G X 74 OK 1594 1591 1593 1615 C4' C X 75 OK 1617 1614 1616 1635 C4' G X 76 OK 1637 1634 1636 1658 C4' G X 77 OK 1660 1657 1659 1681 C4' U X 78 OK 1683 1680 1682 1701 C4' A X 79 OK 1703 1700 1702 1723 C4' C X 80 OK 1725 1722 1724 1743 C4' G X 81 OK 1745 1742 1744 1766 C4' U X 82 OK 1768 1765 1767 1786 C4' U X 83 OK 1788 1785 1787 1806 C4' U X 84 OK 1808 1805 1807 1826 C4' A X 85 OK 1828 1825 1827 1848 C4' C X 86 OK 1850 1847 1849 1868 C4' C X 87 OK 1870 1867 1869 1888 C4' G X 88 OK 1890 1887 1889 1911 C4' C X 89 OK 1913 1910 1912 1931 C4' A X 90 OK 1933 1930 1932 1953 C4' U X 91 OK 1955 1952 1954 1973 C4' C X 92 OK 1975 1972 1974 1993 C4' U X 93 OK 1995 1992 1994 2013 C4' C X 94 OK 2015 2012 2014 2033 C4' G X 95 OK 2035 2032 2034 2056 C4' C X 96 OK 2058 2055 2057 2076 C4' U X 97 OK 2078 2075 2077 2096 C4' G X 98 OK 2098 2095 2097 2119 C4' U X 99 OK 2121 2118 2120 2139 C4' U X 100 OK 2141 2138 2140 2162 C4' CCC X 101 OK 2164 2161 2163 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 5 C5' G X 1 4 6 28 C5' G X 2 27 29 51 C5' A X 3 50 52 73 C5' C X 4 72 74 93 C5' A X 5 92 94 115 C5' G X 6 114 116 138 C5' A X 7 137 139 160 C5' G X 8 159 161 183 C5' U X 9 182 184 203 C5' A X 10 202 204 225 C5' G X 11 224 226 248 C5' G X 12 247 249 271 C5' U X 13 270 272 291 C5' A X 14 290 292 313 C5' A X 15 312 314 335 C5' A X 16 334 336 357 C5' C X 17 356 358 377 C5' G X 18 376 378 400 C5' U X 19 399 401 420 C5' G X 20 419 421 443 C5' C X 21 442 444 463 C5' G X 22 462 464 486 C5' U X 23 485 487 506 C5' A X 24 505 507 528 C5' A X 25 527 529 550 C5' A X 26 549 551 572 C5' G X 27 571 573 595 C5' U X 28 594 596 615 C5' G X 29 614 616 638 C5' C X 30 637 639 658 C5' C X 31 657 659 678 C5' U X 32 677 679 698 C5' G X 33 697 699 721 C5' A X 34 720 722 743 C5' G X 35 742 744 766 C5' G X 36 765 767 789 C5' G X 37 788 790 812 C5' A X 38 811 813 834 C5' C X 39 833 835 854 C5' G X 40 853 855 877 C5' G X 41 876 878 900 C5' G X 42 899 901 923 C5' G X 43 922 924 946 C5' A X 44 945 947 968 C5' G X 45 967 969 991 C5' U X 46 990 992 1011 C5' U X 47 1010 1012 1031 C5' G X 48 1030 1032 1054 C5' U X 49 1053 1055 1074 C5' C X 50 1073 1075 1094 C5' C X 51 1093 1095 1114 C5' U X 52 1113 1115 1134 C5' C X 53 1133 1135 1154 C5' A X 54 1153 1155 1176 C5' G X 55 1175 1177 1199 C5' G X 56 1198 1200 1222 C5' A X 57 1221 1223 1244 C5' C X 58 1243 1245 1264 C5' G X 59 1263 1265 1287 C5' A X 60 1286 1288 1309 C5' A X 61 1308 1310 1331 C5' C X 62 1330 1332 1351 C5' A X 63 1350 1352 1373 C5' C X 64 1372 1374 1393 C5' C X 65 1392 1394 1413 C5' G X 66 1412 1414 1436 C5' A X 67 1435 1437 1458 C5' A X 68 1457 1459 1480 C5' A X 69 1479 1481 1502 C5' G X 70 1501 1503 1525 C5' G X 71 1524 1526 1548 C5' U X 72 1547 1549 1568 C5' G X 73 1567 1569 1591 C5' G X 74 1590 1592 1614 C5' C X 75 1613 1615 1634 C5' G X 76 1633 1635 1657 C5' G X 77 1656 1658 1680 C5' U X 78 1679 1681 1700 C5' A X 79 1699 1701 1722 C5' C X 80 1721 1723 1742 C5' G X 81 1741 1743 1765 C5' U X 82 1764 1766 1785 C5' U X 83 1784 1786 1805 C5' U X 84 1804 1806 1825 C5' A X 85 1824 1826 1847 C5' C X 86 1846 1848 1867 C5' C X 87 1866 1868 1887 C5' G X 88 1886 1888 1910 C5' C X 89 1909 1911 1930 C5' A X 90 1929 1931 1952 C5' U X 91 1951 1953 1972 C5' C X 92 1971 1973 1992 C5' U X 93 1991 1993 2012 C5' C X 94 2011 2013 2032 C5' G X 95 2031 2033 2055 C5' C X 96 2054 2056 2075 C5' U X 97 2074 2076 2095 C5' G X 98 2094 2096 2118 C5' U X 99 2117 2119 2138 C5' U X 100 2137 2139 2161 C5' CCC X 101 2160 2162 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 1 P G X 1 distorted distorted 2 3 4 24 P G X 2 distorted distorted 9 25 26 27 47 P A X 3 distorted distorted 32 48 49 50 69 P C X 4 distorted distorted 55 70 71 72 89 P A X 5 distorted distorted 77 90 91 92 111 P G X 6 distorted distorted 97 112 113 114 134 P A X 7 distorted distorted 119 135 136 137 156 P G X 8 distorted distorted 142 157 158 159 179 P U X 9 distorted distorted 164 180 181 182 199 P A X 10 distorted distorted 187 200 201 202 221 P G X 11 distorted distorted 207 222 223 224 244 P G X 12 distorted distorted 229 245 246 247 267 P U X 13 distorted distorted 252 268 269 270 287 P A X 14 distorted distorted 275 288 289 290 309 P A X 15 distorted distorted 295 310 311 312 331 P A X 16 distorted distorted 317 332 333 334 353 P C X 17 distorted distorted 339 354 355 356 373 P G X 18 distorted distorted 361 374 375 376 396 P U X 19 distorted distorted 381 397 398 399 416 P G X 20 distorted distorted 404 417 418 419 439 P C X 21 distorted distorted 424 440 441 442 459 P G X 22 distorted distorted 447 460 461 462 482 P U X 23 distorted distorted 467 483 484 485 502 P A X 24 distorted distorted 490 503 504 505 524 P A X 25 distorted distorted 510 525 526 527 546 P A X 26 distorted distorted 532 547 548 549 568 P G X 27 distorted distorted 554 569 570 571 591 P U X 28 distorted distorted 576 592 593 594 611 P G X 29 distorted distorted 599 612 613 614 634 P C X 30 distorted distorted 619 635 636 637 654 P C X 31 distorted distorted 642 655 656 657 674 P U X 32 distorted distorted 662 675 676 677 694 P G X 33 distorted distorted 682 695 696 697 717 P A X 34 distorted distorted 702 718 719 720 739 P G X 35 distorted distorted 725 740 741 742 762 P G X 36 distorted distorted 747 763 764 765 785 P G X 37 distorted distorted 770 786 787 788 808 P A X 38 distorted distorted 793 809 810 811 830 P C X 39 distorted distorted 816 831 832 833 850 P G X 40 distorted distorted 838 851 852 853 873 P G X 41 distorted distorted 858 874 875 876 896 P G X 42 distorted distorted 881 897 898 899 919 P G X 43 distorted distorted 904 920 921 922 942 P A X 44 distorted distorted 927 943 944 945 964 P G X 45 distorted distorted 950 965 966 967 987 P U X 46 distorted distorted 972 988 989 990 1007 P U X 47 distorted distorted 995 1008 1009 1010 1027 P G X 48 distorted distorted 1015 1028 1029 1030 1050 P U X 49 distorted distorted 1035 1051 1052 1053 1070 P C X 50 distorted distorted 1058 1071 1072 1073 1090 P C X 51 distorted distorted 1078 1091 1092 1093 1110 P U X 52 distorted distorted 1098 1111 1112 1113 1130 P C X 53 distorted distorted 1118 1131 1132 1133 1150 P A X 54 distorted distorted 1138 1151 1152 1153 1172 P G X 55 distorted distorted 1158 1173 1174 1175 1195 P G X 56 distorted distorted 1180 1196 1197 1198 1218 P A X 57 distorted distorted 1203 1219 1220 1221 1240 P C X 58 distorted distorted 1226 1241 1242 1243 1260 P G X 59 distorted distorted 1248 1261 1262 1263 1283 P A X 60 distorted distorted 1268 1284 1285 1286 1305 P A X 61 distorted distorted 1291 1306 1307 1308 1327 P C X 62 distorted distorted 1313 1328 1329 1330 1347 P A X 63 distorted distorted 1335 1348 1349 1350 1369 P C X 64 distorted distorted 1355 1370 1371 1372 1389 P C X 65 distorted distorted 1377 1390 1391 1392 1409 P G X 66 distorted distorted 1397 1410 1411 1412 1432 P A X 67 distorted distorted 1417 1433 1434 1435 1454 P A X 68 distorted distorted 1440 1455 1456 1457 1476 P A X 69 distorted distorted 1462 1477 1478 1479 1498 P G X 70 distorted distorted 1484 1499 1500 1501 1521 P G X 71 distorted distorted 1506 1522 1523 1524 1544 P U X 72 distorted distorted 1529 1545 1546 1547 1564 P G X 73 distorted distorted 1552 1565 1566 1567 1587 P G X 74 distorted distorted 1572 1588 1589 1590 1610 P C X 75 distorted distorted 1595 1611 1612 1613 1630 P G X 76 distorted distorted 1618 1631 1632 1633 1653 P G X 77 distorted distorted 1638 1654 1655 1656 1676 P U X 78 distorted distorted 1661 1677 1678 1679 1696 P A X 79 distorted distorted 1684 1697 1698 1699 1718 P C X 80 distorted distorted 1704 1719 1720 1721 1738 P G X 81 distorted distorted 1726 1739 1740 1741 1761 P U X 82 distorted distorted 1746 1762 1763 1764 1781 P U X 83 distorted distorted 1769 1782 1783 1784 1801 P U X 84 distorted distorted 1789 1802 1803 1804 1821 P A X 85 distorted distorted 1809 1822 1823 1824 1843 P C X 86 distorted distorted 1829 1844 1845 1846 1863 P C X 87 distorted distorted 1851 1864 1865 1866 1883 P G X 88 distorted distorted 1871 1884 1885 1886 1906 P C X 89 distorted distorted 1891 1907 1908 1909 1926 P A X 90 distorted distorted 1914 1927 1928 1929 1948 P U X 91 distorted distorted 1934 1949 1950 1951 1968 P C X 92 distorted distorted 1956 1969 1970 1971 1988 P U X 93 distorted distorted 1976 1989 1990 1991 2008 P C X 94 distorted distorted 1996 2009 2010 2011 2028 P G X 95 distorted distorted 2016 2029 2030 2031 2051 P C X 96 distorted distorted 2036 2052 2053 2054 2071 P U X 97 distorted distorted 2059 2072 2073 2074 2091 P G X 98 distorted distorted 2079 2092 2093 2094 2114 P U X 99 distorted distorted 2099 2115 2116 2117 2134 P U X 100 distorted distorted 2122 2135 2136 2137 2157 P CCC X 101 distorted distorted 2142 2158 2159 2160 ---------------------------------------------------------------------------------