ID code: '3SLQ' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 21 C1' GTP A 22 beta 16 22 19 44 C1' G A 23 beta 39 45 42 67 C1' C A 24 beta 62 68 65 87 C1' C A 25 beta 82 88 85 107 C1' U A 26 beta 102 108 105 127 C1' U A 27 beta 122 128 125 147 C1' A A 28 beta 142 148 145 169 C1' U A 29 beta 164 170 167 189 C1' A A 30 beta 184 190 187 211 C1' C A 31 beta 206 212 209 231 C1' A A 32 beta 226 232 229 253 C1' G A 33 beta 248 254 251 276 C1' G A 34 beta 271 277 274 299 C1' G A 35 beta 294 300 297 322 C1' U A 36 beta 317 323 320 342 C1' A A 37 beta 337 343 340 364 C1' G A 38 beta 359 365 362 387 C1' C A 39 beta 382 388 385 407 C1' A A 40 beta 402 408 405 429 C1' U A 41 beta 424 430 427 449 C1' A A 42 beta 444 450 447 471 C1' A A 43 beta 466 472 469 493 C1' U A 44 beta 488 494 491 513 C1' G A 45 beta 508 514 511 536 C1' G A 46 beta 531 537 534 559 C1' G A 47 beta 554 560 557 582 C1' C A 48 beta 577 583 580 602 C1' U A 49 beta 597 603 600 622 C1' A A 50 beta 617 623 620 644 C1' C A 51 beta 639 645 642 664 C1' U A 52 beta 659 665 662 684 C1' G A 53 beta 679 685 682 707 C1' A A 54 beta 702 708 705 729 C1' C A 55 beta 724 730 727 749 C1' C A 56 beta 744 750 747 769 C1' C A 57 beta 764 770 767 789 C1' C A 58 beta 784 790 787 809 C1' G A 59 beta 804 810 807 832 C1' C A 60 beta 827 833 830 852 C1' C A 61 beta 847 853 850 872 C1' U A 62 beta 867 873 870 892 C1' U A 63 beta 887 893 890 912 C1' C A 64 beta 907 913 910 932 C1' A A 65 beta 927 933 930 954 C1' A A 66 beta 949 955 952 976 C1' A A 67 beta 971 977 974 998 C1' C A 68 beta 993 999 996 1018 C1' C A 69 beta 1013 1019 1016 1038 C1' U A 70 beta 1033 1039 1036 1058 C1' A A 71 beta 1053 1059 1056 1080 C1' U A 72 beta 1075 1081 1078 1100 C1' U A 73 beta 1095 1101 1098 1120 C1' U A 74 beta 1115 1121 1118 1140 C1' G A 75 beta 1135 1141 1138 1163 C1' G A 76 beta 1158 1164 1161 1186 C1' A A 77 beta 1181 1187 1184 1208 C1' G A 78 beta 1203 1209 1206 1231 C1' A A 79 beta 1226 1232 1229 1253 C1' C A 80 beta 1248 1254 1251 1273 C1' U A 81 beta 1268 1274 1271 1293 C1' A A 82 beta 1288 1294 1291 1315 C1' U A 83 beta 1310 1316 1313 1335 C1' A A 84 beta 1330 1336 1333 1357 C1' A A 85 beta 1352 1358 1355 1379 C1' G A 86 beta 1374 1380 1377 1402 C1' G A 87 beta 1397 1403 1400 1425 C1' U A 88 beta 1420 1426 1423 1448 C1' CCC A 89 beta 1443 1449 1446 1478 C1' GTP B 22 beta 1473 1479 1476 1501 C1' G B 23 beta 1496 1502 1499 1524 C1' C B 24 beta 1519 1525 1522 1544 C1' C B 25 beta 1539 1545 1542 1564 C1' U B 26 beta 1559 1565 1562 1584 C1' U B 27 beta 1579 1585 1582 1604 C1' A B 28 beta 1599 1605 1602 1626 C1' U B 29 beta 1621 1627 1624 1646 C1' A B 30 beta 1641 1647 1644 1668 C1' C B 31 beta 1663 1669 1666 1688 C1' A B 32 beta 1683 1689 1686 1710 C1' G B 33 beta 1705 1711 1708 1733 C1' G B 34 beta 1728 1734 1731 1756 C1' G B 35 beta 1751 1757 1754 1779 C1' U B 36 beta 1774 1780 1777 1799 C1' A B 37 beta 1794 1800 1797 1821 C1' G B 38 beta 1816 1822 1819 1844 C1' C B 39 beta 1839 1845 1842 1864 C1' A B 40 beta 1859 1865 1862 1886 C1' U B 41 beta 1881 1887 1884 1906 C1' A B 42 beta 1901 1907 1904 1928 C1' A B 43 beta 1923 1929 1926 1950 C1' U B 44 beta 1945 1951 1948 1970 C1' G B 45 beta 1965 1971 1968 1993 C1' G B 46 beta 1988 1994 1991 2016 C1' G B 47 beta 2011 2017 2014 2039 C1' C B 48 beta 2034 2040 2037 2059 C1' U B 49 beta 2054 2060 2057 2079 C1' A B 50 beta 2074 2080 2077 2101 C1' C B 51 beta 2096 2102 2099 2121 C1' U B 52 beta 2116 2122 2119 2141 C1' G B 53 beta 2136 2142 2139 2188 C1' C B 57 beta 2183 2189 2186 2208 C1' C B 58 beta 2203 2209 2206 2228 C1' G B 59 beta 2223 2229 2226 2251 C1' C B 60 beta 2246 2252 2249 2271 C1' C B 61 beta 2266 2272 2269 2291 C1' U B 62 beta 2286 2292 2289 2311 C1' U B 63 beta 2306 2312 2309 2331 C1' C B 64 beta 2326 2332 2329 2351 C1' A B 65 beta 2346 2352 2349 2373 C1' A B 66 beta 2368 2374 2371 2395 C1' A B 67 beta 2390 2396 2393 2417 C1' C B 68 beta 2412 2418 2415 2437 C1' C B 69 beta 2432 2438 2435 2457 C1' U B 70 beta 2452 2458 2455 2477 C1' A B 71 beta 2472 2478 2475 2499 C1' U B 72 beta 2494 2500 2497 2519 C1' U B 73 beta 2514 2520 2517 2539 C1' U B 74 beta 2534 2540 2537 2559 C1' G B 75 beta 2554 2560 2557 2582 C1' G B 76 beta 2577 2583 2580 2605 C1' A B 77 beta 2600 2606 2603 2627 C1' G B 78 beta 2622 2628 2625 2650 C1' A B 79 beta 2645 2651 2648 2672 C1' C B 80 beta 2667 2673 2670 2692 C1' U B 81 beta 2687 2693 2690 2712 C1' A B 82 beta 2707 2713 2710 2734 C1' U B 83 beta 2729 2735 2732 2754 C1' A B 84 beta 2749 2755 2752 2776 C1' A B 85 beta 2771 2777 2774 2798 C1' G B 86 beta 2793 2799 2796 2821 C1' G B 87 beta 2816 2822 2819 2844 C1' U B 88 beta 2839 2845 2842 2867 C1' CCC B 89 beta 2862 2868 2865 2889 C1' 5GP A 120 beta 2884 2890 2887 2913 C1' 5GP B 120 beta 2908 2914 2911 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 19 C2' GTP A 22 OK 21 17 20 42 C2' G A 23 OK 44 40 43 65 C2' C A 24 OK 67 63 66 85 C2' C A 25 OK 87 83 86 105 C2' U A 26 OK 107 103 106 125 C2' U A 27 OK 127 123 126 145 C2' A A 28 OK 147 143 146 167 C2' U A 29 OK 169 165 168 187 C2' A A 30 OK 189 185 188 209 C2' C A 31 OK 211 207 210 229 C2' A A 32 OK 231 227 230 251 C2' G A 33 OK 253 249 252 274 C2' G A 34 OK 276 272 275 297 C2' G A 35 OK 299 295 298 320 C2' U A 36 OK 322 318 321 340 C2' A A 37 OK 342 338 341 362 C2' G A 38 OK 364 360 363 385 C2' C A 39 OK 387 383 386 405 C2' A A 40 OK 407 403 406 427 C2' U A 41 OK 429 425 428 447 C2' A A 42 OK 449 445 448 469 C2' A A 43 OK 471 467 470 491 C2' U A 44 OK 493 489 492 511 C2' G A 45 OK 513 509 512 534 C2' G A 46 OK 536 532 535 557 C2' G A 47 OK 559 555 558 580 C2' C A 48 OK 582 578 581 600 C2' U A 49 OK 602 598 601 620 C2' A A 50 OK 622 618 621 642 C2' C A 51 OK 644 640 643 662 C2' U A 52 OK 664 660 663 682 C2' G A 53 OK 684 680 683 705 C2' A A 54 OK 707 703 706 727 C2' C A 55 OK 729 725 728 747 C2' C A 56 OK 749 745 748 767 C2' C A 57 OK 769 765 768 787 C2' C A 58 OK 789 785 788 807 C2' G A 59 OK 809 805 808 830 C2' C A 60 OK 832 828 831 850 C2' C A 61 OK 852 848 851 870 C2' U A 62 OK 872 868 871 890 C2' U A 63 OK 892 888 891 910 C2' C A 64 OK 912 908 911 930 C2' A A 65 OK 932 928 931 952 C2' A A 66 OK 954 950 953 974 C2' A A 67 OK 976 972 975 996 C2' C A 68 OK 998 994 997 1016 C2' C A 69 OK 1018 1014 1017 1036 C2' U A 70 OK 1038 1034 1037 1056 C2' A A 71 OK 1058 1054 1057 1078 C2' U A 72 OK 1080 1076 1079 1098 C2' U A 73 OK 1100 1096 1099 1118 C2' U A 74 OK 1120 1116 1119 1138 C2' G A 75 OK 1140 1136 1139 1161 C2' G A 76 OK 1163 1159 1162 1184 C2' A A 77 OK 1186 1182 1185 1206 C2' G A 78 OK 1208 1204 1207 1229 C2' A A 79 OK 1231 1227 1230 1251 C2' C A 80 OK 1253 1249 1252 1271 C2' U A 81 OK 1273 1269 1272 1291 C2' A A 82 OK 1293 1289 1292 1313 C2' U A 83 OK 1315 1311 1314 1333 C2' A A 84 OK 1335 1331 1334 1355 C2' A A 85 OK 1357 1353 1356 1377 C2' G A 86 OK 1379 1375 1378 1400 C2' G A 87 OK 1402 1398 1401 1423 C2' U A 88 OK 1425 1421 1424 1446 C2' CCC A 89 OK 1448 1444 1447 1476 C2' GTP B 22 OK 1478 1474 1477 1499 C2' G B 23 OK 1501 1497 1500 1522 C2' C B 24 OK 1524 1520 1523 1542 C2' C B 25 OK 1544 1540 1543 1562 C2' U B 26 OK 1564 1560 1563 1582 C2' U B 27 OK 1584 1580 1583 1602 C2' A B 28 OK 1604 1600 1603 1624 C2' U B 29 OK 1626 1622 1625 1644 C2' A B 30 OK 1646 1642 1645 1666 C2' C B 31 OK 1668 1664 1667 1686 C2' A B 32 OK 1688 1684 1687 1708 C2' G B 33 OK 1710 1706 1709 1731 C2' G B 34 OK 1733 1729 1732 1754 C2' G B 35 OK 1756 1752 1755 1777 C2' U B 36 OK 1779 1775 1778 1797 C2' A B 37 OK 1799 1795 1798 1819 C2' G B 38 OK 1821 1817 1820 1842 C2' C B 39 OK 1844 1840 1843 1862 C2' A B 40 OK 1864 1860 1863 1884 C2' U B 41 OK 1886 1882 1885 1904 C2' A B 42 OK 1906 1902 1905 1926 C2' A B 43 OK 1928 1924 1927 1948 C2' U B 44 OK 1950 1946 1949 1968 C2' G B 45 OK 1970 1966 1969 1991 C2' G B 46 OK 1993 1989 1992 2014 C2' G B 47 OK 2016 2012 2015 2037 C2' C B 48 OK 2039 2035 2038 2057 C2' U B 49 OK 2059 2055 2058 2077 C2' A B 50 OK 2079 2075 2078 2099 C2' C B 51 OK 2101 2097 2100 2119 C2' U B 52 OK 2121 2117 2120 2139 C2' G B 53 OK 2141 2137 2140 2186 C2' C B 57 OK 2188 2184 2187 2206 C2' C B 58 OK 2208 2204 2207 2226 C2' G B 59 OK 2228 2224 2227 2249 C2' C B 60 OK 2251 2247 2250 2269 C2' C B 61 OK 2271 2267 2270 2289 C2' U B 62 OK 2291 2287 2290 2309 C2' U B 63 OK 2311 2307 2310 2329 C2' C B 64 OK 2331 2327 2330 2349 C2' A B 65 OK 2351 2347 2350 2371 C2' A B 66 OK 2373 2369 2372 2393 C2' A B 67 OK 2395 2391 2394 2415 C2' C B 68 OK 2417 2413 2416 2435 C2' C B 69 OK 2437 2433 2436 2455 C2' U B 70 OK 2457 2453 2456 2475 C2' A B 71 OK 2477 2473 2476 2497 C2' U B 72 OK 2499 2495 2498 2517 C2' U B 73 OK 2519 2515 2518 2537 C2' U B 74 OK 2539 2535 2538 2557 C2' G B 75 OK 2559 2555 2558 2580 C2' G B 76 OK 2582 2578 2581 2603 C2' A B 77 OK 2605 2601 2604 2625 C2' G B 78 OK 2627 2623 2626 2648 C2' A B 79 OK 2650 2646 2649 2670 C2' C B 80 OK 2672 2668 2671 2690 C2' U B 81 OK 2692 2688 2691 2710 C2' A B 82 OK 2712 2708 2711 2732 C2' U B 83 OK 2734 2730 2733 2752 C2' A B 84 OK 2754 2750 2753 2774 C2' A B 85 OK 2776 2772 2775 2796 C2' G B 86 OK 2798 2794 2797 2819 C2' G B 87 OK 2821 2817 2820 2842 C2' U B 88 OK 2844 2840 2843 2865 C2' CCC B 89 OK 2867 2863 2866 2887 C2' 5GP A 120 OK 2889 2885 2888 2911 C2' 5GP B 120 OK 2913 2909 2912 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 17 C3' GTP A 22 OK 15 18 19 40 C3' G A 23 OK 38 41 42 63 C3' C A 24 OK 61 64 65 83 C3' C A 25 OK 81 84 85 103 C3' U A 26 OK 101 104 105 123 C3' U A 27 OK 121 124 125 143 C3' A A 28 OK 141 144 145 165 C3' U A 29 OK 163 166 167 185 C3' A A 30 OK 183 186 187 207 C3' C A 31 OK 205 208 209 227 C3' A A 32 OK 225 228 229 249 C3' G A 33 OK 247 250 251 272 C3' G A 34 OK 270 273 274 295 C3' G A 35 OK 293 296 297 318 C3' U A 36 OK 316 319 320 338 C3' A A 37 OK 336 339 340 360 C3' G A 38 OK 358 361 362 383 C3' C A 39 OK 381 384 385 403 C3' A A 40 OK 401 404 405 425 C3' U A 41 OK 423 426 427 445 C3' A A 42 OK 443 446 447 467 C3' A A 43 OK 465 468 469 489 C3' U A 44 OK 487 490 491 509 C3' G A 45 OK 507 510 511 532 C3' G A 46 OK 530 533 534 555 C3' G A 47 OK 553 556 557 578 C3' C A 48 OK 576 579 580 598 C3' U A 49 OK 596 599 600 618 C3' A A 50 OK 616 619 620 640 C3' C A 51 OK 638 641 642 660 C3' U A 52 OK 658 661 662 680 C3' G A 53 OK 678 681 682 703 C3' A A 54 OK 701 704 705 725 C3' C A 55 OK 723 726 727 745 C3' C A 56 OK 743 746 747 765 C3' C A 57 OK 763 766 767 785 C3' C A 58 OK 783 786 787 805 C3' G A 59 OK 803 806 807 828 C3' C A 60 OK 826 829 830 848 C3' C A 61 OK 846 849 850 868 C3' U A 62 OK 866 869 870 888 C3' U A 63 OK 886 889 890 908 C3' C A 64 OK 906 909 910 928 C3' A A 65 OK 926 929 930 950 C3' A A 66 OK 948 951 952 972 C3' A A 67 OK 970 973 974 994 C3' C A 68 OK 992 995 996 1014 C3' C A 69 OK 1012 1015 1016 1034 C3' U A 70 OK 1032 1035 1036 1054 C3' A A 71 OK 1052 1055 1056 1076 C3' U A 72 OK 1074 1077 1078 1096 C3' U A 73 OK 1094 1097 1098 1116 C3' U A 74 OK 1114 1117 1118 1136 C3' G A 75 OK 1134 1137 1138 1159 C3' G A 76 OK 1157 1160 1161 1182 C3' A A 77 OK 1180 1183 1184 1204 C3' G A 78 OK 1202 1205 1206 1227 C3' A A 79 OK 1225 1228 1229 1249 C3' C A 80 OK 1247 1250 1251 1269 C3' U A 81 OK 1267 1270 1271 1289 C3' A A 82 OK 1287 1290 1291 1311 C3' U A 83 OK 1309 1312 1313 1331 C3' A A 84 OK 1329 1332 1333 1353 C3' A A 85 OK 1351 1354 1355 1375 C3' G A 86 OK 1373 1376 1377 1398 C3' G A 87 OK 1396 1399 1400 1421 C3' U A 88 OK 1419 1422 1423 1444 C3' CCC A 89 OK 1442 1445 1446 1474 C3' GTP B 22 OK 1472 1475 1476 1497 C3' G B 23 OK 1495 1498 1499 1520 C3' C B 24 OK 1518 1521 1522 1540 C3' C B 25 OK 1538 1541 1542 1560 C3' U B 26 OK 1558 1561 1562 1580 C3' U B 27 OK 1578 1581 1582 1600 C3' A B 28 OK 1598 1601 1602 1622 C3' U B 29 OK 1620 1623 1624 1642 C3' A B 30 OK 1640 1643 1644 1664 C3' C B 31 OK 1662 1665 1666 1684 C3' A B 32 OK 1682 1685 1686 1706 C3' G B 33 OK 1704 1707 1708 1729 C3' G B 34 OK 1727 1730 1731 1752 C3' G B 35 OK 1750 1753 1754 1775 C3' U B 36 OK 1773 1776 1777 1795 C3' A B 37 OK 1793 1796 1797 1817 C3' G B 38 OK 1815 1818 1819 1840 C3' C B 39 OK 1838 1841 1842 1860 C3' A B 40 OK 1858 1861 1862 1882 C3' U B 41 OK 1880 1883 1884 1902 C3' A B 42 OK 1900 1903 1904 1924 C3' A B 43 OK 1922 1925 1926 1946 C3' U B 44 OK 1944 1947 1948 1966 C3' G B 45 OK 1964 1967 1968 1989 C3' G B 46 OK 1987 1990 1991 2012 C3' G B 47 OK 2010 2013 2014 2035 C3' C B 48 OK 2033 2036 2037 2055 C3' U B 49 OK 2053 2056 2057 2075 C3' A B 50 OK 2073 2076 2077 2097 C3' C B 51 OK 2095 2098 2099 2117 C3' U B 52 OK 2115 2118 2119 2137 C3' G B 53 OK 2135 2138 2139 2159 C3' A B 54 2158 2160 2167 C3' C B 55 2166 2168 2175 C3' C B 56 2174 2176 2184 C3' C B 57 OK 2182 2185 2186 2204 C3' C B 58 OK 2202 2205 2206 2224 C3' G B 59 OK 2222 2225 2226 2247 C3' C B 60 OK 2245 2248 2249 2267 C3' C B 61 OK 2265 2268 2269 2287 C3' U B 62 OK 2285 2288 2289 2307 C3' U B 63 OK 2305 2308 2309 2327 C3' C B 64 OK 2325 2328 2329 2347 C3' A B 65 OK 2345 2348 2349 2369 C3' A B 66 OK 2367 2370 2371 2391 C3' A B 67 OK 2389 2392 2393 2413 C3' C B 68 OK 2411 2414 2415 2433 C3' C B 69 OK 2431 2434 2435 2453 C3' U B 70 OK 2451 2454 2455 2473 C3' A B 71 OK 2471 2474 2475 2495 C3' U B 72 OK 2493 2496 2497 2515 C3' U B 73 OK 2513 2516 2517 2535 C3' U B 74 OK 2533 2536 2537 2555 C3' G B 75 OK 2553 2556 2557 2578 C3' G B 76 OK 2576 2579 2580 2601 C3' A B 77 OK 2599 2602 2603 2623 C3' G B 78 OK 2621 2624 2625 2646 C3' A B 79 OK 2644 2647 2648 2668 C3' C B 80 OK 2666 2669 2670 2688 C3' U B 81 OK 2686 2689 2690 2708 C3' A B 82 OK 2706 2709 2710 2730 C3' U B 83 OK 2728 2731 2732 2750 C3' A B 84 OK 2748 2751 2752 2772 C3' A B 85 OK 2770 2773 2774 2794 C3' G B 86 OK 2792 2795 2796 2817 C3' G B 87 OK 2815 2818 2819 2840 C3' U B 88 OK 2838 2841 2842 2863 C3' CCC B 89 OK 2861 2864 2865 2885 C3' 5GP A 120 OK 2883 2886 2887 2909 C3' 5GP B 120 OK 2907 2910 2911 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 15 C4' GTP A 22 OK 17 14 16 38 C4' G A 23 OK 40 37 39 61 C4' C A 24 OK 63 60 62 81 C4' C A 25 OK 83 80 82 101 C4' U A 26 OK 103 100 102 121 C4' U A 27 OK 123 120 122 141 C4' A A 28 OK 143 140 142 163 C4' U A 29 OK 165 162 164 183 C4' A A 30 OK 185 182 184 205 C4' C A 31 OK 207 204 206 225 C4' A A 32 OK 227 224 226 247 C4' G A 33 OK 249 246 248 270 C4' G A 34 OK 272 269 271 293 C4' G A 35 OK 295 292 294 316 C4' U A 36 OK 318 315 317 336 C4' A A 37 OK 338 335 337 358 C4' G A 38 OK 360 357 359 381 C4' C A 39 OK 383 380 382 401 C4' A A 40 OK 403 400 402 423 C4' U A 41 OK 425 422 424 443 C4' A A 42 OK 445 442 444 465 C4' A A 43 OK 467 464 466 487 C4' U A 44 OK 489 486 488 507 C4' G A 45 OK 509 506 508 530 C4' G A 46 OK 532 529 531 553 C4' G A 47 OK 555 552 554 576 C4' C A 48 OK 578 575 577 596 C4' U A 49 OK 598 595 597 616 C4' A A 50 OK 618 615 617 638 C4' C A 51 OK 640 637 639 658 C4' U A 52 OK 660 657 659 678 C4' G A 53 OK 680 677 679 701 C4' A A 54 OK 703 700 702 723 C4' C A 55 OK 725 722 724 743 C4' C A 56 OK 745 742 744 763 C4' C A 57 OK 765 762 764 783 C4' C A 58 OK 785 782 784 803 C4' G A 59 OK 805 802 804 826 C4' C A 60 OK 828 825 827 846 C4' C A 61 OK 848 845 847 866 C4' U A 62 OK 868 865 867 886 C4' U A 63 OK 888 885 887 906 C4' C A 64 OK 908 905 907 926 C4' A A 65 OK 928 925 927 948 C4' A A 66 OK 950 947 949 970 C4' A A 67 OK 972 969 971 992 C4' C A 68 OK 994 991 993 1012 C4' C A 69 OK 1014 1011 1013 1032 C4' U A 70 OK 1034 1031 1033 1052 C4' A A 71 OK 1054 1051 1053 1074 C4' U A 72 OK 1076 1073 1075 1094 C4' U A 73 OK 1096 1093 1095 1114 C4' U A 74 OK 1116 1113 1115 1134 C4' G A 75 OK 1136 1133 1135 1157 C4' G A 76 OK 1159 1156 1158 1180 C4' A A 77 OK 1182 1179 1181 1202 C4' G A 78 OK 1204 1201 1203 1225 C4' A A 79 OK 1227 1224 1226 1247 C4' C A 80 OK 1249 1246 1248 1267 C4' U A 81 OK 1269 1266 1268 1287 C4' A A 82 OK 1289 1286 1288 1309 C4' U A 83 OK 1311 1308 1310 1329 C4' A A 84 OK 1331 1328 1330 1351 C4' A A 85 OK 1353 1350 1352 1373 C4' G A 86 OK 1375 1372 1374 1396 C4' G A 87 OK 1398 1395 1397 1419 C4' U A 88 OK 1421 1418 1420 1442 C4' CCC A 89 OK 1444 1441 1443 1472 C4' GTP B 22 OK 1474 1471 1473 1495 C4' G B 23 OK 1497 1494 1496 1518 C4' C B 24 OK 1520 1517 1519 1538 C4' C B 25 OK 1540 1537 1539 1558 C4' U B 26 OK 1560 1557 1559 1578 C4' U B 27 OK 1580 1577 1579 1598 C4' A B 28 OK 1600 1597 1599 1620 C4' U B 29 OK 1622 1619 1621 1640 C4' A B 30 OK 1642 1639 1641 1662 C4' C B 31 OK 1664 1661 1663 1682 C4' A B 32 OK 1684 1681 1683 1704 C4' G B 33 OK 1706 1703 1705 1727 C4' G B 34 OK 1729 1726 1728 1750 C4' G B 35 OK 1752 1749 1751 1773 C4' U B 36 OK 1775 1772 1774 1793 C4' A B 37 OK 1795 1792 1794 1815 C4' G B 38 OK 1817 1814 1816 1838 C4' C B 39 OK 1840 1837 1839 1858 C4' A B 40 OK 1860 1857 1859 1880 C4' U B 41 OK 1882 1879 1881 1900 C4' A B 42 OK 1902 1899 1901 1922 C4' A B 43 OK 1924 1921 1923 1944 C4' U B 44 OK 1946 1943 1945 1964 C4' G B 45 OK 1966 1963 1965 1987 C4' G B 46 OK 1989 1986 1988 2010 C4' G B 47 OK 2012 2009 2011 2033 C4' C B 48 OK 2035 2032 2034 2053 C4' U B 49 OK 2055 2052 2054 2073 C4' A B 50 OK 2075 2072 2074 2095 C4' C B 51 OK 2097 2094 2096 2115 C4' U B 52 OK 2117 2114 2116 2135 C4' G B 53 OK 2137 2134 2136 2158 C4' A B 54 2159 2157 2166 C4' C B 55 2167 2165 2174 C4' C B 56 2175 2173 2182 C4' C B 57 OK 2184 2181 2183 2202 C4' C B 58 OK 2204 2201 2203 2222 C4' G B 59 OK 2224 2221 2223 2245 C4' C B 60 OK 2247 2244 2246 2265 C4' C B 61 OK 2267 2264 2266 2285 C4' U B 62 OK 2287 2284 2286 2305 C4' U B 63 OK 2307 2304 2306 2325 C4' C B 64 OK 2327 2324 2326 2345 C4' A B 65 OK 2347 2344 2346 2367 C4' A B 66 OK 2369 2366 2368 2389 C4' A B 67 OK 2391 2388 2390 2411 C4' C B 68 OK 2413 2410 2412 2431 C4' C B 69 OK 2433 2430 2432 2451 C4' U B 70 OK 2453 2450 2452 2471 C4' A B 71 OK 2473 2470 2472 2493 C4' U B 72 OK 2495 2492 2494 2513 C4' U B 73 OK 2515 2512 2514 2533 C4' U B 74 OK 2535 2532 2534 2553 C4' G B 75 OK 2555 2552 2554 2576 C4' G B 76 OK 2578 2575 2577 2599 C4' A B 77 OK 2601 2598 2600 2621 C4' G B 78 OK 2623 2620 2622 2644 C4' A B 79 OK 2646 2643 2645 2666 C4' C B 80 OK 2668 2665 2667 2686 C4' U B 81 OK 2688 2685 2687 2706 C4' A B 82 OK 2708 2705 2707 2728 C4' U B 83 OK 2730 2727 2729 2748 C4' A B 84 OK 2750 2747 2749 2770 C4' A B 85 OK 2772 2769 2771 2792 C4' G B 86 OK 2794 2791 2793 2815 C4' G B 87 OK 2817 2814 2816 2838 C4' U B 88 OK 2840 2837 2839 2861 C4' CCC B 89 OK 2863 2860 2862 2883 C4' 5GP A 120 OK 2885 2882 2884 2907 C4' 5GP B 120 OK 2909 2906 2908 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 14 C5' GTP A 22 13 15 37 C5' G A 23 36 38 60 C5' C A 24 59 61 80 C5' C A 25 79 81 100 C5' U A 26 99 101 120 C5' U A 27 119 121 140 C5' A A 28 139 141 162 C5' U A 29 161 163 182 C5' A A 30 181 183 204 C5' C A 31 203 205 224 C5' A A 32 223 225 246 C5' G A 33 245 247 269 C5' G A 34 268 270 292 C5' G A 35 291 293 315 C5' U A 36 314 316 335 C5' A A 37 334 336 357 C5' G A 38 356 358 380 C5' C A 39 379 381 400 C5' A A 40 399 401 422 C5' U A 41 421 423 442 C5' A A 42 441 443 464 C5' A A 43 463 465 486 C5' U A 44 485 487 506 C5' G A 45 505 507 529 C5' G A 46 528 530 552 C5' G A 47 551 553 575 C5' C A 48 574 576 595 C5' U A 49 594 596 615 C5' A A 50 614 616 637 C5' C A 51 636 638 657 C5' U A 52 656 658 677 C5' G A 53 676 678 700 C5' A A 54 699 701 722 C5' C A 55 721 723 742 C5' C A 56 741 743 762 C5' C A 57 761 763 782 C5' C A 58 781 783 802 C5' G A 59 801 803 825 C5' C A 60 824 826 845 C5' C A 61 844 846 865 C5' U A 62 864 866 885 C5' U A 63 884 886 905 C5' C A 64 904 906 925 C5' A A 65 924 926 947 C5' A A 66 946 948 969 C5' A A 67 968 970 991 C5' C A 68 990 992 1011 C5' C A 69 1010 1012 1031 C5' U A 70 1030 1032 1051 C5' A A 71 1050 1052 1073 C5' U A 72 1072 1074 1093 C5' U A 73 1092 1094 1113 C5' U A 74 1112 1114 1133 C5' G A 75 1132 1134 1156 C5' G A 76 1155 1157 1179 C5' A A 77 1178 1180 1201 C5' G A 78 1200 1202 1224 C5' A A 79 1223 1225 1246 C5' C A 80 1245 1247 1266 C5' U A 81 1265 1267 1286 C5' A A 82 1285 1287 1308 C5' U A 83 1307 1309 1328 C5' A A 84 1327 1329 1350 C5' A A 85 1349 1351 1372 C5' G A 86 1371 1373 1395 C5' G A 87 1394 1396 1418 C5' U A 88 1417 1419 1441 C5' CCC A 89 1440 1442 1471 C5' GTP B 22 1470 1472 1494 C5' G B 23 1493 1495 1517 C5' C B 24 1516 1518 1537 C5' C B 25 1536 1538 1557 C5' U B 26 1556 1558 1577 C5' U B 27 1576 1578 1597 C5' A B 28 1596 1598 1619 C5' U B 29 1618 1620 1639 C5' A B 30 1638 1640 1661 C5' C B 31 1660 1662 1681 C5' A B 32 1680 1682 1703 C5' G B 33 1702 1704 1726 C5' G B 34 1725 1727 1749 C5' G B 35 1748 1750 1772 C5' U B 36 1771 1773 1792 C5' A B 37 1791 1793 1814 C5' G B 38 1813 1815 1837 C5' C B 39 1836 1838 1857 C5' A B 40 1856 1858 1879 C5' U B 41 1878 1880 1899 C5' A B 42 1898 1900 1921 C5' A B 43 1920 1922 1943 C5' U B 44 1942 1944 1963 C5' G B 45 1962 1964 1986 C5' G B 46 1985 1987 2009 C5' G B 47 2008 2010 2032 C5' C B 48 2031 2033 2052 C5' U B 49 2051 2053 2072 C5' A B 50 2071 2073 2094 C5' C B 51 2093 2095 2114 C5' U B 52 2113 2115 2134 C5' G B 53 2133 2135 2157 C5' A B 54 2156 2158 2165 C5' C B 55 2164 2166 2173 C5' C B 56 2172 2174 2181 C5' C B 57 2180 2182 2201 C5' C B 58 2200 2202 2221 C5' G B 59 2220 2222 2244 C5' C B 60 2243 2245 2264 C5' C B 61 2263 2265 2284 C5' U B 62 2283 2285 2304 C5' U B 63 2303 2305 2324 C5' C B 64 2323 2325 2344 C5' A B 65 2343 2345 2366 C5' A B 66 2365 2367 2388 C5' A B 67 2387 2389 2410 C5' C B 68 2409 2411 2430 C5' C B 69 2429 2431 2450 C5' U B 70 2449 2451 2470 C5' A B 71 2469 2471 2492 C5' U B 72 2491 2493 2512 C5' U B 73 2511 2513 2532 C5' U B 74 2531 2533 2552 C5' G B 75 2551 2553 2575 C5' G B 76 2574 2576 2598 C5' A B 77 2597 2599 2620 C5' G B 78 2619 2621 2643 C5' A B 79 2642 2644 2665 C5' C B 80 2664 2666 2685 C5' U B 81 2684 2686 2705 C5' A B 82 2704 2706 2727 C5' U B 83 2726 2728 2747 C5' A B 84 2746 2748 2769 C5' A B 85 2768 2770 2791 C5' G B 86 2790 2792 2814 C5' G B 87 2813 2815 2837 C5' U B 88 2836 2838 2860 C5' CCC B 89 2859 2861 2882 C5' 5GP A 120 2881 2883 2906 C5' 5GP B 120 2905 2907 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 33 P G A 23 distorted distorted 18 34 35 36 56 P C A 24 distorted distorted 41 57 58 59 76 P C A 25 distorted distorted 64 77 78 79 96 P U A 26 distorted distorted 84 97 98 99 116 P U A 27 distorted distorted 104 117 118 119 136 P A A 28 distorted distorted 124 137 138 139 158 P U A 29 distorted distorted 144 159 160 161 178 P A A 30 distorted distorted 166 179 180 181 200 P C A 31 distorted distorted 186 201 202 203 220 P A A 32 distorted distorted 208 221 222 223 242 P G A 33 distorted distorted 228 243 244 245 265 P G A 34 distorted distorted 250 266 267 268 288 P G A 35 distorted distorted 273 289 290 291 311 P U A 36 distorted distorted 296 312 313 314 331 P A A 37 distorted distorted 319 332 333 334 353 P G A 38 distorted distorted 339 354 355 356 376 P C A 39 distorted distorted 361 377 378 379 396 P A A 40 distorted distorted 384 397 398 399 418 P U A 41 distorted distorted 404 419 420 421 438 P A A 42 distorted distorted 426 439 440 441 460 P A A 43 distorted distorted 446 461 462 463 482 P U A 44 distorted distorted 468 483 484 485 502 P G A 45 distorted distorted 490 503 504 505 525 P G A 46 distorted distorted 510 526 527 528 548 P G A 47 distorted distorted 533 549 550 551 571 P C A 48 distorted distorted 556 572 573 574 591 P U A 49 distorted distorted 579 592 593 594 611 P A A 50 distorted distorted 599 612 613 614 633 P C A 51 distorted distorted 619 634 635 636 653 P U A 52 distorted distorted 641 654 655 656 673 P G A 53 distorted distorted 661 674 675 676 696 P A A 54 distorted distorted 681 697 698 699 718 P C A 55 distorted distorted 704 719 720 721 738 P C A 56 distorted distorted 726 739 740 741 758 P C A 57 distorted distorted 746 759 760 761 778 P C A 58 distorted distorted 766 779 780 781 798 P G A 59 distorted distorted 786 799 800 801 821 P C A 60 distorted distorted 806 822 823 824 841 P C A 61 distorted distorted 829 842 843 844 861 P U A 62 distorted distorted 849 862 863 864 881 P U A 63 distorted distorted 869 882 883 884 901 P C A 64 distorted distorted 889 902 903 904 921 P A A 65 distorted distorted 909 922 923 924 943 P A A 66 distorted distorted 929 944 945 946 965 P A A 67 distorted distorted 951 966 967 968 987 P C A 68 distorted distorted 973 988 989 990 1007 P C A 69 distorted distorted 995 1008 1009 1010 1027 P U A 70 distorted distorted 1015 1028 1029 1030 1047 P A A 71 distorted distorted 1035 1048 1049 1050 1069 P U A 72 distorted distorted 1055 1070 1071 1072 1089 P U A 73 distorted distorted 1077 1090 1091 1092 1109 P U A 74 distorted distorted 1097 1110 1111 1112 1129 P G A 75 distorted distorted 1117 1130 1131 1132 1152 P G A 76 distorted distorted 1137 1153 1154 1155 1175 P A A 77 distorted distorted 1160 1176 1177 1178 1197 P G A 78 distorted distorted 1183 1198 1199 1200 1220 P A A 79 distorted distorted 1205 1221 1222 1223 1242 P C A 80 distorted distorted 1228 1243 1244 1245 1262 P U A 81 distorted distorted 1250 1263 1264 1265 1282 P A A 82 distorted distorted 1270 1283 1284 1285 1304 P U A 83 distorted distorted 1290 1305 1306 1307 1324 P A A 84 distorted distorted 1312 1325 1326 1327 1346 P A A 85 distorted distorted 1332 1347 1348 1349 1368 P G A 86 distorted distorted 1354 1369 1370 1371 1391 P G A 87 distorted distorted 1376 1392 1393 1394 1414 P U A 88 distorted distorted 1399 1415 1416 1417 1437 P CCC A 89 distorted distorted 1422 1438 1439 1440 1490 P G B 23 distorted distorted 1475 1491 1492 1493 1513 P C B 24 distorted distorted 1498 1514 1515 1516 1533 P C B 25 distorted distorted 1521 1534 1535 1536 1553 P U B 26 distorted distorted 1541 1554 1555 1556 1573 P U B 27 distorted distorted 1561 1574 1575 1576 1593 P A B 28 distorted distorted 1581 1594 1595 1596 1615 P U B 29 distorted distorted 1601 1616 1617 1618 1635 P A B 30 distorted distorted 1623 1636 1637 1638 1657 P C B 31 distorted distorted 1643 1658 1659 1660 1677 P A B 32 distorted distorted 1665 1678 1679 1680 1699 P G B 33 distorted distorted 1685 1700 1701 1702 1722 P G B 34 distorted distorted 1707 1723 1724 1725 1745 P G B 35 distorted distorted 1730 1746 1747 1748 1768 P U B 36 distorted distorted 1753 1769 1770 1771 1788 P A B 37 distorted distorted 1776 1789 1790 1791 1810 P G B 38 distorted distorted 1796 1811 1812 1813 1833 P C B 39 distorted distorted 1818 1834 1835 1836 1853 P A B 40 distorted distorted 1841 1854 1855 1856 1875 P U B 41 distorted distorted 1861 1876 1877 1878 1895 P A B 42 distorted distorted 1883 1896 1897 1898 1917 P A B 43 distorted distorted 1903 1918 1919 1920 1939 P U B 44 distorted distorted 1925 1940 1941 1942 1959 P G B 45 distorted distorted 1947 1960 1961 1962 1982 P G B 46 distorted distorted 1967 1983 1984 1985 2005 P G B 47 distorted distorted 1990 2006 2007 2008 2028 P C B 48 distorted distorted 2013 2029 2030 2031 2048 P U B 49 distorted distorted 2036 2049 2050 2051 2068 P A B 50 distorted distorted 2056 2069 2070 2071 2090 P C B 51 distorted distorted 2076 2091 2092 2093 2110 P U B 52 distorted distorted 2098 2111 2112 2113 2130 P G B 53 distorted distorted 2118 2131 2132 2133 2153 P A B 54 distorted distorted 2138 2154 2155 2156 2161 P C B 55 distorted distorted 2160 2162 2163 2164 2169 P C B 56 distorted distorted 2168 2170 2171 2172 2177 P C B 57 distorted distorted 2176 2178 2179 2180 2197 P C B 58 distorted distorted 2185 2198 2199 2200 2217 P G B 59 distorted distorted 2205 2218 2219 2220 2240 P C B 60 distorted distorted 2225 2241 2242 2243 2260 P C B 61 distorted distorted 2248 2261 2262 2263 2280 P U B 62 distorted distorted 2268 2281 2282 2283 2300 P U B 63 distorted distorted 2288 2301 2302 2303 2320 P C B 64 distorted distorted 2308 2321 2322 2323 2340 P A B 65 distorted distorted 2328 2341 2342 2343 2362 P A B 66 distorted distorted 2348 2363 2364 2365 2384 P A B 67 distorted distorted 2370 2385 2386 2387 2406 P C B 68 distorted distorted 2392 2407 2408 2409 2426 P C B 69 distorted distorted 2414 2427 2428 2429 2446 P U B 70 distorted distorted 2434 2447 2448 2449 2466 P A B 71 distorted distorted 2454 2467 2468 2469 2488 P U B 72 distorted distorted 2474 2489 2490 2491 2508 P U B 73 distorted distorted 2496 2509 2510 2511 2528 P U B 74 distorted distorted 2516 2529 2530 2531 2548 P G B 75 distorted distorted 2536 2549 2550 2551 2571 P G B 76 distorted distorted 2556 2572 2573 2574 2594 P A B 77 distorted distorted 2579 2595 2596 2597 2616 P G B 78 distorted distorted 2602 2617 2618 2619 2639 P A B 79 distorted distorted 2624 2640 2641 2642 2661 P C B 80 distorted distorted 2647 2662 2663 2664 2681 P U B 81 distorted distorted 2669 2682 2683 2684 2701 P A B 82 distorted distorted 2689 2702 2703 2704 2723 P U B 83 distorted distorted 2709 2724 2725 2726 2743 P A B 84 distorted distorted 2731 2744 2745 2746 2765 P A B 85 distorted distorted 2751 2766 2767 2768 2787 P G B 86 distorted distorted 2773 2788 2789 2790 2810 P G B 87 distorted distorted 2795 2811 2812 2813 2833 P U B 88 distorted distorted 2818 2834 2835 2836 2856 P CCC B 89 distorted distorted 2841 2857 2858 2859 2877 P 5GP A 120 OK OK 2878 2879 2881 2901 P 5GP B 120 OK OK 2902 2903 2905 ---------------------------------------------------------------------------------