ID code: '3SKT' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 21 C1' GTP A 23 beta 16 22 19 44 C1' G A 24 beta 39 45 42 67 C1' C A 25 beta 62 68 65 87 C1' U A 26 beta 82 88 85 107 C1' U A 27 beta 102 108 105 127 C1' A A 28 beta 122 128 125 149 C1' U A 29 beta 144 150 147 169 C1' A A 30 beta 164 170 167 191 C1' C A 31 beta 186 192 189 211 C1' A A 32 beta 206 212 209 233 C1' G A 33 beta 228 234 231 256 C1' G A 34 beta 251 257 254 279 C1' G A 35 beta 274 280 277 302 C1' U A 36 beta 297 303 300 322 C1' A A 37 beta 317 323 320 344 C1' G A 38 beta 339 345 342 367 C1' C A 39 beta 362 368 365 387 C1' A A 40 beta 382 388 385 409 C1' U A 41 beta 404 410 407 429 C1' A A 42 beta 424 430 427 451 C1' A A 43 beta 446 452 449 473 C1' U A 44 beta 468 474 471 493 C1' G A 45 beta 488 494 491 516 C1' G A 46 beta 511 517 514 539 C1' G A 47 beta 534 540 537 562 C1' C A 48 beta 557 563 560 582 C1' U A 49 beta 577 583 580 602 C1' A A 50 beta 597 603 600 624 C1' C A 51 beta 619 625 622 644 C1' U A 52 beta 639 645 642 664 C1' G A 53 beta 659 665 662 687 C1' A A 54 beta 682 688 685 709 C1' C A 55 beta 704 710 707 729 C1' C A 56 beta 724 730 727 749 C1' C A 57 beta 744 750 747 769 C1' C A 58 beta 764 770 767 789 C1' G A 59 beta 784 790 787 812 C1' C A 60 beta 807 813 810 832 C1' C A 61 beta 827 833 830 852 C1' U A 62 beta 847 853 850 872 C1' U A 63 beta 867 873 870 892 C1' C A 64 beta 887 893 890 912 C1' A A 65 beta 907 913 910 934 C1' A A 66 beta 929 935 932 956 C1' A A 67 beta 951 957 954 978 C1' C A 68 beta 973 979 976 998 C1' C A 69 beta 993 999 996 1018 C1' U A 70 beta 1013 1019 1016 1038 C1' A A 71 beta 1033 1039 1036 1060 C1' U A 72 beta 1055 1061 1058 1080 C1' U A 73 beta 1075 1081 1078 1100 C1' U A 74 beta 1095 1101 1098 1120 C1' G A 75 beta 1115 1121 1118 1143 C1' G A 76 beta 1138 1144 1141 1166 C1' A A 77 beta 1161 1167 1164 1188 C1' G A 78 beta 1183 1189 1186 1211 C1' A A 79 beta 1206 1212 1209 1233 C1' C A 80 beta 1228 1234 1231 1253 C1' U A 81 beta 1248 1254 1251 1273 C1' A A 82 beta 1268 1274 1271 1295 C1' U A 83 beta 1290 1296 1293 1315 C1' A A 84 beta 1310 1316 1313 1337 C1' A A 85 beta 1332 1338 1335 1359 C1' G A 86 beta 1354 1360 1357 1382 C1' U A 87 beta 1377 1383 1380 1405 C1' CCC A 88 beta 1400 1406 1403 1435 C1' GTP B 23 beta 1430 1436 1433 1458 C1' G B 24 beta 1453 1459 1456 1481 C1' C B 25 beta 1476 1482 1479 1501 C1' U B 26 beta 1496 1502 1499 1521 C1' U B 27 beta 1516 1522 1519 1541 C1' A B 28 beta 1536 1542 1539 1563 C1' U B 29 beta 1558 1564 1561 1583 C1' A B 30 beta 1578 1584 1581 1605 C1' C B 31 beta 1600 1606 1603 1625 C1' A B 32 beta 1620 1626 1623 1647 C1' G B 33 beta 1642 1648 1645 1670 C1' G B 34 beta 1665 1671 1668 1693 C1' G B 35 beta 1688 1694 1691 1716 C1' U B 36 beta 1711 1717 1714 1736 C1' A B 37 beta 1731 1737 1734 1758 C1' G B 38 beta 1753 1759 1756 1781 C1' C B 39 beta 1776 1782 1779 1801 C1' A B 40 beta 1796 1802 1799 1823 C1' U B 41 beta 1818 1824 1821 1843 C1' A B 42 beta 1838 1844 1841 1865 C1' A B 43 beta 1860 1866 1863 1887 C1' U B 44 beta 1882 1888 1885 1907 C1' G B 45 beta 1902 1908 1905 1930 C1' G B 46 beta 1925 1931 1928 1953 C1' G B 47 beta 1948 1954 1951 1976 C1' C B 48 beta 1971 1977 1974 1996 C1' U B 49 beta 1991 1997 1994 2016 C1' A B 50 beta 2011 2017 2014 2038 C1' C B 51 beta 2033 2039 2036 2058 C1' U B 52 beta 2053 2059 2056 2078 C1' G B 53 beta 2073 2079 2076 2101 C1' A B 54 beta 2096 2102 2099 2123 C1' C B 55 beta 2118 2124 2121 2143 C1' C B 56 beta 2138 2144 2141 2163 C1' C B 57 beta 2158 2164 2161 2183 C1' C B 58 beta 2178 2184 2181 2203 C1' G B 59 beta 2198 2204 2201 2226 C1' C B 60 beta 2221 2227 2224 2246 C1' C B 61 beta 2241 2247 2244 2266 C1' U B 62 beta 2261 2267 2264 2286 C1' U B 63 beta 2281 2287 2284 2306 C1' C B 64 beta 2301 2307 2304 2326 C1' A B 65 beta 2321 2327 2324 2348 C1' A B 66 beta 2343 2349 2346 2370 C1' A B 67 beta 2365 2371 2368 2392 C1' C B 68 beta 2387 2393 2390 2412 C1' C B 69 beta 2407 2413 2410 2432 C1' U B 70 beta 2427 2433 2430 2452 C1' A B 71 beta 2447 2453 2450 2474 C1' U B 72 beta 2469 2475 2472 2494 C1' U B 73 beta 2489 2495 2492 2514 C1' U B 74 beta 2509 2515 2512 2534 C1' G B 75 beta 2529 2535 2532 2557 C1' G B 76 beta 2552 2558 2555 2580 C1' A B 77 beta 2575 2581 2578 2602 C1' G B 78 beta 2597 2603 2600 2625 C1' A B 79 beta 2620 2626 2623 2647 C1' C B 80 beta 2642 2648 2645 2667 C1' U B 81 beta 2662 2668 2665 2687 C1' A B 82 beta 2682 2688 2685 2709 C1' U B 83 beta 2704 2710 2707 2729 C1' A B 84 beta 2724 2730 2727 2751 C1' A B 85 beta 2746 2752 2749 2773 C1' G B 86 beta 2768 2774 2771 2796 C1' U B 87 beta 2791 2797 2794 2819 C1' CCC B 88 beta 2814 2820 2817 2833 C1' GNG A 89 beta 2832 2834 2845 2860 C1' GNG B 89 beta 2859 2861 2872 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 19 C2' GTP A 23 OK 21 17 20 42 C2' G A 24 OK 44 40 43 65 C2' C A 25 OK 67 63 66 85 C2' U A 26 OK 87 83 86 105 C2' U A 27 OK 107 103 106 125 C2' A A 28 OK 127 123 126 147 C2' U A 29 OK 149 145 148 167 C2' A A 30 OK 169 165 168 189 C2' C A 31 OK 191 187 190 209 C2' A A 32 OK 211 207 210 231 C2' G A 33 OK 233 229 232 254 C2' G A 34 OK 256 252 255 277 C2' G A 35 OK 279 275 278 300 C2' U A 36 OK 302 298 301 320 C2' A A 37 OK 322 318 321 342 C2' G A 38 OK 344 340 343 365 C2' C A 39 OK 367 363 366 385 C2' A A 40 OK 387 383 386 407 C2' U A 41 OK 409 405 408 427 C2' A A 42 OK 429 425 428 449 C2' A A 43 OK 451 447 450 471 C2' U A 44 OK 473 469 472 491 C2' G A 45 OK 493 489 492 514 C2' G A 46 OK 516 512 515 537 C2' G A 47 OK 539 535 538 560 C2' C A 48 OK 562 558 561 580 C2' U A 49 OK 582 578 581 600 C2' A A 50 OK 602 598 601 622 C2' C A 51 OK 624 620 623 642 C2' U A 52 OK 644 640 643 662 C2' G A 53 OK 664 660 663 685 C2' A A 54 OK 687 683 686 707 C2' C A 55 OK 709 705 708 727 C2' C A 56 OK 729 725 728 747 C2' C A 57 OK 749 745 748 767 C2' C A 58 OK 769 765 768 787 C2' G A 59 OK 789 785 788 810 C2' C A 60 OK 812 808 811 830 C2' C A 61 OK 832 828 831 850 C2' U A 62 OK 852 848 851 870 C2' U A 63 OK 872 868 871 890 C2' C A 64 OK 892 888 891 910 C2' A A 65 OK 912 908 911 932 C2' A A 66 OK 934 930 933 954 C2' A A 67 OK 956 952 955 976 C2' C A 68 OK 978 974 977 996 C2' C A 69 OK 998 994 997 1016 C2' U A 70 OK 1018 1014 1017 1036 C2' A A 71 OK 1038 1034 1037 1058 C2' U A 72 OK 1060 1056 1059 1078 C2' U A 73 OK 1080 1076 1079 1098 C2' U A 74 OK 1100 1096 1099 1118 C2' G A 75 OK 1120 1116 1119 1141 C2' G A 76 OK 1143 1139 1142 1164 C2' A A 77 OK 1166 1162 1165 1186 C2' G A 78 OK 1188 1184 1187 1209 C2' A A 79 OK 1211 1207 1210 1231 C2' C A 80 OK 1233 1229 1232 1251 C2' U A 81 OK 1253 1249 1252 1271 C2' A A 82 OK 1273 1269 1272 1293 C2' U A 83 OK 1295 1291 1294 1313 C2' A A 84 OK 1315 1311 1314 1335 C2' A A 85 OK 1337 1333 1336 1357 C2' G A 86 OK 1359 1355 1358 1380 C2' U A 87 OK 1382 1378 1381 1403 C2' CCC A 88 OK 1405 1401 1404 1433 C2' GTP B 23 OK 1435 1431 1434 1456 C2' G B 24 OK 1458 1454 1457 1479 C2' C B 25 OK 1481 1477 1480 1499 C2' U B 26 OK 1501 1497 1500 1519 C2' U B 27 OK 1521 1517 1520 1539 C2' A B 28 OK 1541 1537 1540 1561 C2' U B 29 OK 1563 1559 1562 1581 C2' A B 30 OK 1583 1579 1582 1603 C2' C B 31 OK 1605 1601 1604 1623 C2' A B 32 OK 1625 1621 1624 1645 C2' G B 33 OK 1647 1643 1646 1668 C2' G B 34 OK 1670 1666 1669 1691 C2' G B 35 OK 1693 1689 1692 1714 C2' U B 36 OK 1716 1712 1715 1734 C2' A B 37 OK 1736 1732 1735 1756 C2' G B 38 OK 1758 1754 1757 1779 C2' C B 39 OK 1781 1777 1780 1799 C2' A B 40 OK 1801 1797 1800 1821 C2' U B 41 OK 1823 1819 1822 1841 C2' A B 42 OK 1843 1839 1842 1863 C2' A B 43 OK 1865 1861 1864 1885 C2' U B 44 OK 1887 1883 1886 1905 C2' G B 45 OK 1907 1903 1906 1928 C2' G B 46 OK 1930 1926 1929 1951 C2' G B 47 OK 1953 1949 1952 1974 C2' C B 48 OK 1976 1972 1975 1994 C2' U B 49 OK 1996 1992 1995 2014 C2' A B 50 OK 2016 2012 2015 2036 C2' C B 51 OK 2038 2034 2037 2056 C2' U B 52 OK 2058 2054 2057 2076 C2' G B 53 OK 2078 2074 2077 2099 C2' A B 54 OK 2101 2097 2100 2121 C2' C B 55 OK 2123 2119 2122 2141 C2' C B 56 OK 2143 2139 2142 2161 C2' C B 57 OK 2163 2159 2162 2181 C2' C B 58 OK 2183 2179 2182 2201 C2' G B 59 OK 2203 2199 2202 2224 C2' C B 60 OK 2226 2222 2225 2244 C2' C B 61 OK 2246 2242 2245 2264 C2' U B 62 OK 2266 2262 2265 2284 C2' U B 63 OK 2286 2282 2285 2304 C2' C B 64 OK 2306 2302 2305 2324 C2' A B 65 OK 2326 2322 2325 2346 C2' A B 66 OK 2348 2344 2347 2368 C2' A B 67 OK 2370 2366 2369 2390 C2' C B 68 OK 2392 2388 2391 2410 C2' C B 69 OK 2412 2408 2411 2430 C2' U B 70 OK 2432 2428 2431 2450 C2' A B 71 OK 2452 2448 2451 2472 C2' U B 72 OK 2474 2470 2473 2492 C2' U B 73 OK 2494 2490 2493 2512 C2' U B 74 OK 2514 2510 2513 2532 C2' G B 75 OK 2534 2530 2533 2555 C2' G B 76 OK 2557 2553 2556 2578 C2' A B 77 OK 2580 2576 2579 2600 C2' G B 78 OK 2602 2598 2601 2623 C2' A B 79 OK 2625 2621 2624 2645 C2' C B 80 OK 2647 2643 2646 2665 C2' U B 81 OK 2667 2663 2666 2685 C2' A B 82 OK 2687 2683 2686 2707 C2' U B 83 OK 2709 2705 2708 2727 C2' A B 84 OK 2729 2725 2728 2749 C2' A B 85 OK 2751 2747 2750 2771 C2' G B 86 OK 2773 2769 2772 2794 C2' U B 87 OK 2796 2792 2795 2817 C2' CCC B 88 OK 2819 2815 2818 2845 C2' GNG A 89 2833 2846 2872 C2' GNG B 89 2860 2873 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 17 C3' GTP A 23 OK 15 18 19 40 C3' G A 24 OK 38 41 42 63 C3' C A 25 OK 61 64 65 83 C3' U A 26 OK 81 84 85 103 C3' U A 27 OK 101 104 105 123 C3' A A 28 OK 121 124 125 145 C3' U A 29 OK 143 146 147 165 C3' A A 30 OK 163 166 167 187 C3' C A 31 OK 185 188 189 207 C3' A A 32 OK 205 208 209 229 C3' G A 33 OK 227 230 231 252 C3' G A 34 OK 250 253 254 275 C3' G A 35 OK 273 276 277 298 C3' U A 36 OK 296 299 300 318 C3' A A 37 OK 316 319 320 340 C3' G A 38 OK 338 341 342 363 C3' C A 39 OK 361 364 365 383 C3' A A 40 OK 381 384 385 405 C3' U A 41 OK 403 406 407 425 C3' A A 42 OK 423 426 427 447 C3' A A 43 OK 445 448 449 469 C3' U A 44 OK 467 470 471 489 C3' G A 45 OK 487 490 491 512 C3' G A 46 OK 510 513 514 535 C3' G A 47 OK 533 536 537 558 C3' C A 48 OK 556 559 560 578 C3' U A 49 OK 576 579 580 598 C3' A A 50 OK 596 599 600 620 C3' C A 51 OK 618 621 622 640 C3' U A 52 OK 638 641 642 660 C3' G A 53 OK 658 661 662 683 C3' A A 54 OK 681 684 685 705 C3' C A 55 OK 703 706 707 725 C3' C A 56 OK 723 726 727 745 C3' C A 57 OK 743 746 747 765 C3' C A 58 OK 763 766 767 785 C3' G A 59 OK 783 786 787 808 C3' C A 60 OK 806 809 810 828 C3' C A 61 OK 826 829 830 848 C3' U A 62 OK 846 849 850 868 C3' U A 63 OK 866 869 870 888 C3' C A 64 OK 886 889 890 908 C3' A A 65 OK 906 909 910 930 C3' A A 66 OK 928 931 932 952 C3' A A 67 OK 950 953 954 974 C3' C A 68 OK 972 975 976 994 C3' C A 69 OK 992 995 996 1014 C3' U A 70 OK 1012 1015 1016 1034 C3' A A 71 OK 1032 1035 1036 1056 C3' U A 72 OK 1054 1057 1058 1076 C3' U A 73 OK 1074 1077 1078 1096 C3' U A 74 OK 1094 1097 1098 1116 C3' G A 75 OK 1114 1117 1118 1139 C3' G A 76 OK 1137 1140 1141 1162 C3' A A 77 OK 1160 1163 1164 1184 C3' G A 78 OK 1182 1185 1186 1207 C3' A A 79 OK 1205 1208 1209 1229 C3' C A 80 OK 1227 1230 1231 1249 C3' U A 81 OK 1247 1250 1251 1269 C3' A A 82 OK 1267 1270 1271 1291 C3' U A 83 OK 1289 1292 1293 1311 C3' A A 84 OK 1309 1312 1313 1333 C3' A A 85 OK 1331 1334 1335 1355 C3' G A 86 OK 1353 1356 1357 1378 C3' U A 87 OK 1376 1379 1380 1401 C3' CCC A 88 OK 1399 1402 1403 1431 C3' GTP B 23 OK 1429 1432 1433 1454 C3' G B 24 OK 1452 1455 1456 1477 C3' C B 25 OK 1475 1478 1479 1497 C3' U B 26 OK 1495 1498 1499 1517 C3' U B 27 OK 1515 1518 1519 1537 C3' A B 28 OK 1535 1538 1539 1559 C3' U B 29 OK 1557 1560 1561 1579 C3' A B 30 OK 1577 1580 1581 1601 C3' C B 31 OK 1599 1602 1603 1621 C3' A B 32 OK 1619 1622 1623 1643 C3' G B 33 OK 1641 1644 1645 1666 C3' G B 34 OK 1664 1667 1668 1689 C3' G B 35 OK 1687 1690 1691 1712 C3' U B 36 OK 1710 1713 1714 1732 C3' A B 37 OK 1730 1733 1734 1754 C3' G B 38 OK 1752 1755 1756 1777 C3' C B 39 OK 1775 1778 1779 1797 C3' A B 40 OK 1795 1798 1799 1819 C3' U B 41 OK 1817 1820 1821 1839 C3' A B 42 OK 1837 1840 1841 1861 C3' A B 43 OK 1859 1862 1863 1883 C3' U B 44 OK 1881 1884 1885 1903 C3' G B 45 OK 1901 1904 1905 1926 C3' G B 46 OK 1924 1927 1928 1949 C3' G B 47 OK 1947 1950 1951 1972 C3' C B 48 OK 1970 1973 1974 1992 C3' U B 49 OK 1990 1993 1994 2012 C3' A B 50 OK 2010 2013 2014 2034 C3' C B 51 OK 2032 2035 2036 2054 C3' U B 52 OK 2052 2055 2056 2074 C3' G B 53 OK 2072 2075 2076 2097 C3' A B 54 OK 2095 2098 2099 2119 C3' C B 55 OK 2117 2120 2121 2139 C3' C B 56 OK 2137 2140 2141 2159 C3' C B 57 OK 2157 2160 2161 2179 C3' C B 58 OK 2177 2180 2181 2199 C3' G B 59 OK 2197 2200 2201 2222 C3' C B 60 OK 2220 2223 2224 2242 C3' C B 61 OK 2240 2243 2244 2262 C3' U B 62 OK 2260 2263 2264 2282 C3' U B 63 OK 2280 2283 2284 2302 C3' C B 64 OK 2300 2303 2304 2322 C3' A B 65 OK 2320 2323 2324 2344 C3' A B 66 OK 2342 2345 2346 2366 C3' A B 67 OK 2364 2367 2368 2388 C3' C B 68 OK 2386 2389 2390 2408 C3' C B 69 OK 2406 2409 2410 2428 C3' U B 70 OK 2426 2429 2430 2448 C3' A B 71 OK 2446 2449 2450 2470 C3' U B 72 OK 2468 2471 2472 2490 C3' U B 73 OK 2488 2491 2492 2510 C3' U B 74 OK 2508 2511 2512 2530 C3' G B 75 OK 2528 2531 2532 2553 C3' G B 76 OK 2551 2554 2555 2576 C3' A B 77 OK 2574 2577 2578 2598 C3' G B 78 OK 2596 2599 2600 2621 C3' A B 79 OK 2619 2622 2623 2643 C3' C B 80 OK 2641 2644 2645 2663 C3' U B 81 OK 2661 2664 2665 2683 C3' A B 82 OK 2681 2684 2685 2705 C3' U B 83 OK 2703 2706 2707 2725 C3' A B 84 OK 2723 2726 2727 2747 C3' A B 85 OK 2745 2748 2749 2769 C3' G B 86 OK 2767 2770 2771 2792 C3' U B 87 OK 2790 2793 2794 2815 C3' CCC B 88 OK 2813 2816 2817 2846 C3' GNG A 89 OK 2831 2847 2845 2873 C3' GNG B 89 OK 2858 2874 2872 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 15 C4' GTP A 23 OK 17 14 16 38 C4' G A 24 OK 40 37 39 61 C4' C A 25 OK 63 60 62 81 C4' U A 26 OK 83 80 82 101 C4' U A 27 OK 103 100 102 121 C4' A A 28 OK 123 120 122 143 C4' U A 29 OK 145 142 144 163 C4' A A 30 OK 165 162 164 185 C4' C A 31 OK 187 184 186 205 C4' A A 32 OK 207 204 206 227 C4' G A 33 OK 229 226 228 250 C4' G A 34 OK 252 249 251 273 C4' G A 35 OK 275 272 274 296 C4' U A 36 OK 298 295 297 316 C4' A A 37 OK 318 315 317 338 C4' G A 38 OK 340 337 339 361 C4' C A 39 OK 363 360 362 381 C4' A A 40 OK 383 380 382 403 C4' U A 41 OK 405 402 404 423 C4' A A 42 OK 425 422 424 445 C4' A A 43 OK 447 444 446 467 C4' U A 44 OK 469 466 468 487 C4' G A 45 OK 489 486 488 510 C4' G A 46 OK 512 509 511 533 C4' G A 47 OK 535 532 534 556 C4' C A 48 OK 558 555 557 576 C4' U A 49 OK 578 575 577 596 C4' A A 50 OK 598 595 597 618 C4' C A 51 OK 620 617 619 638 C4' U A 52 OK 640 637 639 658 C4' G A 53 OK 660 657 659 681 C4' A A 54 OK 683 680 682 703 C4' C A 55 OK 705 702 704 723 C4' C A 56 OK 725 722 724 743 C4' C A 57 OK 745 742 744 763 C4' C A 58 OK 765 762 764 783 C4' G A 59 OK 785 782 784 806 C4' C A 60 OK 808 805 807 826 C4' C A 61 OK 828 825 827 846 C4' U A 62 OK 848 845 847 866 C4' U A 63 OK 868 865 867 886 C4' C A 64 OK 888 885 887 906 C4' A A 65 OK 908 905 907 928 C4' A A 66 OK 930 927 929 950 C4' A A 67 OK 952 949 951 972 C4' C A 68 OK 974 971 973 992 C4' C A 69 OK 994 991 993 1012 C4' U A 70 OK 1014 1011 1013 1032 C4' A A 71 OK 1034 1031 1033 1054 C4' U A 72 OK 1056 1053 1055 1074 C4' U A 73 OK 1076 1073 1075 1094 C4' U A 74 OK 1096 1093 1095 1114 C4' G A 75 OK 1116 1113 1115 1137 C4' G A 76 OK 1139 1136 1138 1160 C4' A A 77 OK 1162 1159 1161 1182 C4' G A 78 OK 1184 1181 1183 1205 C4' A A 79 OK 1207 1204 1206 1227 C4' C A 80 OK 1229 1226 1228 1247 C4' U A 81 OK 1249 1246 1248 1267 C4' A A 82 OK 1269 1266 1268 1289 C4' U A 83 OK 1291 1288 1290 1309 C4' A A 84 OK 1311 1308 1310 1331 C4' A A 85 OK 1333 1330 1332 1353 C4' G A 86 OK 1355 1352 1354 1376 C4' U A 87 OK 1378 1375 1377 1399 C4' CCC A 88 OK 1401 1398 1400 1429 C4' GTP B 23 OK 1431 1428 1430 1452 C4' G B 24 OK 1454 1451 1453 1475 C4' C B 25 OK 1477 1474 1476 1495 C4' U B 26 OK 1497 1494 1496 1515 C4' U B 27 OK 1517 1514 1516 1535 C4' A B 28 OK 1537 1534 1536 1557 C4' U B 29 OK 1559 1556 1558 1577 C4' A B 30 OK 1579 1576 1578 1599 C4' C B 31 OK 1601 1598 1600 1619 C4' A B 32 OK 1621 1618 1620 1641 C4' G B 33 OK 1643 1640 1642 1664 C4' G B 34 OK 1666 1663 1665 1687 C4' G B 35 OK 1689 1686 1688 1710 C4' U B 36 OK 1712 1709 1711 1730 C4' A B 37 OK 1732 1729 1731 1752 C4' G B 38 OK 1754 1751 1753 1775 C4' C B 39 OK 1777 1774 1776 1795 C4' A B 40 OK 1797 1794 1796 1817 C4' U B 41 OK 1819 1816 1818 1837 C4' A B 42 OK 1839 1836 1838 1859 C4' A B 43 OK 1861 1858 1860 1881 C4' U B 44 OK 1883 1880 1882 1901 C4' G B 45 OK 1903 1900 1902 1924 C4' G B 46 OK 1926 1923 1925 1947 C4' G B 47 OK 1949 1946 1948 1970 C4' C B 48 OK 1972 1969 1971 1990 C4' U B 49 OK 1992 1989 1991 2010 C4' A B 50 OK 2012 2009 2011 2032 C4' C B 51 OK 2034 2031 2033 2052 C4' U B 52 OK 2054 2051 2053 2072 C4' G B 53 OK 2074 2071 2073 2095 C4' A B 54 OK 2097 2094 2096 2117 C4' C B 55 OK 2119 2116 2118 2137 C4' C B 56 OK 2139 2136 2138 2157 C4' C B 57 OK 2159 2156 2158 2177 C4' C B 58 OK 2179 2176 2178 2197 C4' G B 59 OK 2199 2196 2198 2220 C4' C B 60 OK 2222 2219 2221 2240 C4' C B 61 OK 2242 2239 2241 2260 C4' U B 62 OK 2262 2259 2261 2280 C4' U B 63 OK 2282 2279 2281 2300 C4' C B 64 OK 2302 2299 2301 2320 C4' A B 65 OK 2322 2319 2321 2342 C4' A B 66 OK 2344 2341 2343 2364 C4' A B 67 OK 2366 2363 2365 2386 C4' C B 68 OK 2388 2385 2387 2406 C4' C B 69 OK 2408 2405 2407 2426 C4' U B 70 OK 2428 2425 2427 2446 C4' A B 71 OK 2448 2445 2447 2468 C4' U B 72 OK 2470 2467 2469 2488 C4' U B 73 OK 2490 2487 2489 2508 C4' U B 74 OK 2510 2507 2509 2528 C4' G B 75 OK 2530 2527 2529 2551 C4' G B 76 OK 2553 2550 2552 2574 C4' A B 77 OK 2576 2573 2575 2596 C4' G B 78 OK 2598 2595 2597 2619 C4' A B 79 OK 2621 2618 2620 2641 C4' C B 80 OK 2643 2640 2642 2661 C4' U B 81 OK 2663 2660 2662 2681 C4' A B 82 OK 2683 2680 2682 2703 C4' U B 83 OK 2705 2702 2704 2723 C4' A B 84 OK 2725 2722 2724 2745 C4' A B 85 OK 2747 2744 2746 2767 C4' G B 86 OK 2769 2766 2768 2790 C4' U B 87 OK 2792 2789 2791 2813 C4' CCC B 88 OK 2815 2812 2814 2831 C4' GNG A 89 OK 2846 2830 2832 2858 C4' GNG B 89 OK 2873 2857 2859 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 14 C5' GTP A 23 13 15 37 C5' G A 24 36 38 60 C5' C A 25 59 61 80 C5' U A 26 79 81 100 C5' U A 27 99 101 120 C5' A A 28 119 121 142 C5' U A 29 141 143 162 C5' A A 30 161 163 184 C5' C A 31 183 185 204 C5' A A 32 203 205 226 C5' G A 33 225 227 249 C5' G A 34 248 250 272 C5' G A 35 271 273 295 C5' U A 36 294 296 315 C5' A A 37 314 316 337 C5' G A 38 336 338 360 C5' C A 39 359 361 380 C5' A A 40 379 381 402 C5' U A 41 401 403 422 C5' A A 42 421 423 444 C5' A A 43 443 445 466 C5' U A 44 465 467 486 C5' G A 45 485 487 509 C5' G A 46 508 510 532 C5' G A 47 531 533 555 C5' C A 48 554 556 575 C5' U A 49 574 576 595 C5' A A 50 594 596 617 C5' C A 51 616 618 637 C5' U A 52 636 638 657 C5' G A 53 656 658 680 C5' A A 54 679 681 702 C5' C A 55 701 703 722 C5' C A 56 721 723 742 C5' C A 57 741 743 762 C5' C A 58 761 763 782 C5' G A 59 781 783 805 C5' C A 60 804 806 825 C5' C A 61 824 826 845 C5' U A 62 844 846 865 C5' U A 63 864 866 885 C5' C A 64 884 886 905 C5' A A 65 904 906 927 C5' A A 66 926 928 949 C5' A A 67 948 950 971 C5' C A 68 970 972 991 C5' C A 69 990 992 1011 C5' U A 70 1010 1012 1031 C5' A A 71 1030 1032 1053 C5' U A 72 1052 1054 1073 C5' U A 73 1072 1074 1093 C5' U A 74 1092 1094 1113 C5' G A 75 1112 1114 1136 C5' G A 76 1135 1137 1159 C5' A A 77 1158 1160 1181 C5' G A 78 1180 1182 1204 C5' A A 79 1203 1205 1226 C5' C A 80 1225 1227 1246 C5' U A 81 1245 1247 1266 C5' A A 82 1265 1267 1288 C5' U A 83 1287 1289 1308 C5' A A 84 1307 1309 1330 C5' A A 85 1329 1331 1352 C5' G A 86 1351 1353 1375 C5' U A 87 1374 1376 1398 C5' CCC A 88 1397 1399 1428 C5' GTP B 23 1427 1429 1451 C5' G B 24 1450 1452 1474 C5' C B 25 1473 1475 1494 C5' U B 26 1493 1495 1514 C5' U B 27 1513 1515 1534 C5' A B 28 1533 1535 1556 C5' U B 29 1555 1557 1576 C5' A B 30 1575 1577 1598 C5' C B 31 1597 1599 1618 C5' A B 32 1617 1619 1640 C5' G B 33 1639 1641 1663 C5' G B 34 1662 1664 1686 C5' G B 35 1685 1687 1709 C5' U B 36 1708 1710 1729 C5' A B 37 1728 1730 1751 C5' G B 38 1750 1752 1774 C5' C B 39 1773 1775 1794 C5' A B 40 1793 1795 1816 C5' U B 41 1815 1817 1836 C5' A B 42 1835 1837 1858 C5' A B 43 1857 1859 1880 C5' U B 44 1879 1881 1900 C5' G B 45 1899 1901 1923 C5' G B 46 1922 1924 1946 C5' G B 47 1945 1947 1969 C5' C B 48 1968 1970 1989 C5' U B 49 1988 1990 2009 C5' A B 50 2008 2010 2031 C5' C B 51 2030 2032 2051 C5' U B 52 2050 2052 2071 C5' G B 53 2070 2072 2094 C5' A B 54 2093 2095 2116 C5' C B 55 2115 2117 2136 C5' C B 56 2135 2137 2156 C5' C B 57 2155 2157 2176 C5' C B 58 2175 2177 2196 C5' G B 59 2195 2197 2219 C5' C B 60 2218 2220 2239 C5' C B 61 2238 2240 2259 C5' U B 62 2258 2260 2279 C5' U B 63 2278 2280 2299 C5' C B 64 2298 2300 2319 C5' A B 65 2318 2320 2341 C5' A B 66 2340 2342 2363 C5' A B 67 2362 2364 2385 C5' C B 68 2384 2386 2405 C5' C B 69 2404 2406 2425 C5' U B 70 2424 2426 2445 C5' A B 71 2444 2446 2467 C5' U B 72 2466 2468 2487 C5' U B 73 2486 2488 2507 C5' U B 74 2506 2508 2527 C5' G B 75 2526 2528 2550 C5' G B 76 2549 2551 2573 C5' A B 77 2572 2574 2595 C5' G B 78 2594 2596 2618 C5' A B 79 2617 2619 2640 C5' C B 80 2639 2641 2660 C5' U B 81 2659 2661 2680 C5' A B 82 2679 2681 2702 C5' U B 83 2701 2703 2722 C5' A B 84 2721 2723 2744 C5' A B 85 2743 2745 2766 C5' G B 86 2765 2767 2789 C5' U B 87 2788 2790 2812 C5' CCC B 88 2811 2813 2830 C5' GNG A 89 2829 2831 2857 C5' GNG B 89 2856 2858 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 33 P G A 24 distorted distorted 18 34 35 36 56 P C A 25 distorted distorted 41 57 58 59 76 P U A 26 distorted distorted 64 77 78 79 96 P U A 27 distorted distorted 84 97 98 99 116 P A A 28 distorted distorted 104 117 118 119 138 P U A 29 distorted distorted 124 139 140 141 158 P A A 30 distorted distorted 146 159 160 161 180 P C A 31 distorted distorted 166 181 182 183 200 P A A 32 distorted distorted 188 201 202 203 222 P G A 33 distorted distorted 208 223 224 225 245 P G A 34 distorted distorted 230 246 247 248 268 P G A 35 distorted distorted 253 269 270 271 291 P U A 36 distorted distorted 276 292 293 294 311 P A A 37 distorted distorted 299 312 313 314 333 P G A 38 distorted distorted 319 334 335 336 356 P C A 39 distorted distorted 341 357 358 359 376 P A A 40 distorted distorted 364 377 378 379 398 P U A 41 distorted distorted 384 399 400 401 418 P A A 42 distorted distorted 406 419 420 421 440 P A A 43 distorted distorted 426 441 442 443 462 P U A 44 distorted distorted 448 463 464 465 482 P G A 45 distorted distorted 470 483 484 485 505 P G A 46 distorted distorted 490 506 507 508 528 P G A 47 distorted distorted 513 529 530 531 551 P C A 48 distorted distorted 536 552 553 554 571 P U A 49 distorted distorted 559 572 573 574 591 P A A 50 distorted distorted 579 592 593 594 613 P C A 51 distorted distorted 599 614 615 616 633 P U A 52 distorted distorted 621 634 635 636 653 P G A 53 distorted distorted 641 654 655 656 676 P A A 54 distorted distorted 661 677 678 679 698 P C A 55 distorted distorted 684 699 700 701 718 P C A 56 distorted distorted 706 719 720 721 738 P C A 57 distorted distorted 726 739 740 741 758 P C A 58 distorted distorted 746 759 760 761 778 P G A 59 distorted distorted 766 779 780 781 801 P C A 60 distorted distorted 786 802 803 804 821 P C A 61 distorted distorted 809 822 823 824 841 P U A 62 distorted distorted 829 842 843 844 861 P U A 63 distorted distorted 849 862 863 864 881 P C A 64 distorted distorted 869 882 883 884 901 P A A 65 distorted distorted 889 902 903 904 923 P A A 66 distorted distorted 909 924 925 926 945 P A A 67 distorted distorted 931 946 947 948 967 P C A 68 distorted distorted 953 968 969 970 987 P C A 69 distorted distorted 975 988 989 990 1007 P U A 70 distorted distorted 995 1008 1009 1010 1027 P A A 71 distorted distorted 1015 1028 1029 1030 1049 P U A 72 distorted distorted 1035 1050 1051 1052 1069 P U A 73 distorted distorted 1057 1070 1071 1072 1089 P U A 74 distorted distorted 1077 1090 1091 1092 1109 P G A 75 distorted distorted 1097 1110 1111 1112 1132 P G A 76 distorted distorted 1117 1133 1134 1135 1155 P A A 77 distorted distorted 1140 1156 1157 1158 1177 P G A 78 distorted distorted 1163 1178 1179 1180 1200 P A A 79 distorted distorted 1185 1201 1202 1203 1222 P C A 80 distorted distorted 1208 1223 1224 1225 1242 P U A 81 distorted distorted 1230 1243 1244 1245 1262 P A A 82 distorted distorted 1250 1263 1264 1265 1284 P U A 83 distorted distorted 1270 1285 1286 1287 1304 P A A 84 distorted distorted 1292 1305 1306 1307 1326 P A A 85 distorted distorted 1312 1327 1328 1329 1348 P G A 86 distorted distorted 1334 1349 1350 1351 1371 P U A 87 distorted distorted 1356 1372 1373 1374 1394 P CCC A 88 distorted distorted 1379 1395 1396 1397 1447 P G B 24 distorted distorted 1432 1448 1449 1450 1470 P C B 25 distorted distorted 1455 1471 1472 1473 1490 P U B 26 distorted distorted 1478 1491 1492 1493 1510 P U B 27 distorted distorted 1498 1511 1512 1513 1530 P A B 28 distorted distorted 1518 1531 1532 1533 1552 P U B 29 distorted distorted 1538 1553 1554 1555 1572 P A B 30 distorted distorted 1560 1573 1574 1575 1594 P C B 31 distorted distorted 1580 1595 1596 1597 1614 P A B 32 distorted distorted 1602 1615 1616 1617 1636 P G B 33 distorted distorted 1622 1637 1638 1639 1659 P G B 34 distorted distorted 1644 1660 1661 1662 1682 P G B 35 distorted distorted 1667 1683 1684 1685 1705 P U B 36 distorted distorted 1690 1706 1707 1708 1725 P A B 37 distorted distorted 1713 1726 1727 1728 1747 P G B 38 distorted distorted 1733 1748 1749 1750 1770 P C B 39 distorted distorted 1755 1771 1772 1773 1790 P A B 40 distorted distorted 1778 1791 1792 1793 1812 P U B 41 distorted distorted 1798 1813 1814 1815 1832 P A B 42 distorted distorted 1820 1833 1834 1835 1854 P A B 43 distorted distorted 1840 1855 1856 1857 1876 P U B 44 distorted distorted 1862 1877 1878 1879 1896 P G B 45 distorted distorted 1884 1897 1898 1899 1919 P G B 46 distorted distorted 1904 1920 1921 1922 1942 P G B 47 distorted distorted 1927 1943 1944 1945 1965 P C B 48 distorted distorted 1950 1966 1967 1968 1985 P U B 49 distorted distorted 1973 1986 1987 1988 2005 P A B 50 distorted distorted 1993 2006 2007 2008 2027 P C B 51 distorted distorted 2013 2028 2029 2030 2047 P U B 52 distorted distorted 2035 2048 2049 2050 2067 P G B 53 distorted distorted 2055 2068 2069 2070 2090 P A B 54 distorted distorted 2075 2091 2092 2093 2112 P C B 55 distorted distorted 2098 2113 2114 2115 2132 P C B 56 distorted distorted 2120 2133 2134 2135 2152 P C B 57 distorted distorted 2140 2153 2154 2155 2172 P C B 58 distorted distorted 2160 2173 2174 2175 2192 P G B 59 distorted distorted 2180 2193 2194 2195 2215 P C B 60 distorted distorted 2200 2216 2217 2218 2235 P C B 61 distorted distorted 2223 2236 2237 2238 2255 P U B 62 distorted distorted 2243 2256 2257 2258 2275 P U B 63 distorted distorted 2263 2276 2277 2278 2295 P C B 64 distorted distorted 2283 2296 2297 2298 2315 P A B 65 distorted distorted 2303 2316 2317 2318 2337 P A B 66 distorted distorted 2323 2338 2339 2340 2359 P A B 67 distorted distorted 2345 2360 2361 2362 2381 P C B 68 distorted distorted 2367 2382 2383 2384 2401 P C B 69 distorted distorted 2389 2402 2403 2404 2421 P U B 70 distorted distorted 2409 2422 2423 2424 2441 P A B 71 distorted distorted 2429 2442 2443 2444 2463 P U B 72 distorted distorted 2449 2464 2465 2466 2483 P U B 73 distorted distorted 2471 2484 2485 2486 2503 P U B 74 distorted distorted 2491 2504 2505 2506 2523 P G B 75 distorted distorted 2511 2524 2525 2526 2546 P G B 76 distorted distorted 2531 2547 2548 2549 2569 P A B 77 distorted distorted 2554 2570 2571 2572 2591 P G B 78 distorted distorted 2577 2592 2593 2594 2614 P A B 79 distorted distorted 2599 2615 2616 2617 2636 P C B 80 distorted distorted 2622 2637 2638 2639 2656 P U B 81 distorted distorted 2644 2657 2658 2659 2676 P A B 82 distorted distorted 2664 2677 2678 2679 2698 P U B 83 distorted distorted 2684 2699 2700 2701 2718 P A B 84 distorted distorted 2706 2719 2720 2721 2740 P A B 85 distorted distorted 2726 2741 2742 2743 2762 P G B 86 distorted distorted 2748 2763 2764 2765 2785 P U B 87 distorted distorted 2770 2786 2787 2788 2808 P CCC B 88 distorted distorted 2793 2809 2810 2811 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