ID code: '3SKI' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 21 C1' GTP A 22 beta 16 22 19 44 C1' G A 23 beta 39 45 42 67 C1' C A 24 beta 62 68 65 87 C1' C A 25 beta 82 88 85 107 C1' U A 26 beta 102 108 105 127 C1' U A 27 beta 122 128 125 147 C1' A A 28 beta 142 148 145 169 C1' U A 29 beta 164 170 167 189 C1' A A 30 beta 184 190 187 211 C1' C A 31 beta 206 212 209 231 C1' A A 32 beta 226 232 229 253 C1' G A 33 beta 248 254 251 276 C1' G A 34 beta 271 277 274 299 C1' G A 35 beta 294 300 297 322 C1' U A 36 beta 317 323 320 342 C1' A A 37 beta 337 343 340 364 C1' G A 38 beta 359 365 362 387 C1' C A 39 beta 382 388 385 407 C1' A A 40 beta 402 408 405 429 C1' U A 41 beta 424 430 427 449 C1' A A 42 beta 444 450 447 471 C1' A A 43 beta 466 472 469 493 C1' U A 44 beta 488 494 491 513 C1' G A 45 beta 508 514 511 536 C1' G A 46 beta 531 537 534 559 C1' G A 47 beta 554 560 557 582 C1' C A 48 beta 577 583 580 602 C1' U A 49 beta 597 603 600 622 C1' A A 50 beta 617 623 620 644 C1' C A 51 beta 639 645 642 664 C1' U A 52 beta 659 665 662 684 C1' G A 53 beta 679 685 682 707 C1' A A 54 beta 702 708 705 729 C1' C A 55 beta 724 730 727 749 C1' C A 56 beta 744 750 747 769 C1' C A 57 beta 764 770 767 789 C1' C A 58 beta 784 790 787 809 C1' G A 59 beta 804 810 807 832 C1' C A 60 beta 827 833 830 852 C1' C A 61 beta 847 853 850 872 C1' U A 62 beta 867 873 870 892 C1' U A 63 beta 887 893 890 912 C1' C A 64 beta 907 913 910 932 C1' A A 65 beta 927 933 930 954 C1' A A 66 beta 949 955 952 976 C1' A A 67 beta 971 977 974 998 C1' C A 68 beta 993 999 996 1018 C1' C A 69 beta 1013 1019 1016 1038 C1' U A 70 beta 1033 1039 1036 1058 C1' A A 71 beta 1053 1059 1056 1080 C1' U A 72 beta 1075 1081 1078 1100 C1' U A 73 beta 1095 1101 1098 1120 C1' U A 74 beta 1115 1121 1118 1140 C1' G A 75 beta 1135 1141 1138 1163 C1' G A 76 beta 1158 1164 1161 1186 C1' A A 77 beta 1181 1187 1184 1208 C1' G A 78 beta 1203 1209 1206 1231 C1' A A 79 beta 1226 1232 1229 1253 C1' C A 80 beta 1248 1254 1251 1273 C1' U A 81 beta 1268 1274 1271 1293 C1' A A 82 beta 1288 1294 1291 1315 C1' U A 83 beta 1310 1316 1313 1335 C1' A A 84 beta 1330 1336 1333 1357 C1' A A 85 beta 1352 1358 1355 1379 C1' G A 86 beta 1374 1380 1377 1402 C1' G A 87 beta 1397 1403 1400 1425 C1' U A 88 beta 1420 1426 1423 1448 C1' CCC A 89 beta 1443 1449 1446 1469 C1' G B 22 beta 1464 1470 1467 1492 C1' G B 23 beta 1487 1493 1490 1515 C1' C B 24 beta 1510 1516 1513 1535 C1' C B 25 beta 1530 1536 1533 1555 C1' U B 26 beta 1550 1556 1553 1575 C1' U B 27 beta 1570 1576 1573 1595 C1' A B 28 beta 1590 1596 1593 1617 C1' U B 29 beta 1612 1618 1615 1637 C1' A B 30 beta 1632 1638 1635 1659 C1' C B 31 beta 1654 1660 1657 1679 C1' A B 32 beta 1674 1680 1677 1701 C1' G B 33 beta 1696 1702 1699 1724 C1' G B 34 beta 1719 1725 1722 1747 C1' G B 35 beta 1742 1748 1745 1770 C1' U B 36 beta 1765 1771 1768 1790 C1' A B 37 beta 1785 1791 1788 1812 C1' G B 38 beta 1807 1813 1810 1835 C1' C B 39 beta 1830 1836 1833 1855 C1' A B 40 beta 1850 1856 1853 1877 C1' U B 41 beta 1872 1878 1875 1897 C1' A B 42 beta 1892 1898 1895 1919 C1' A B 43 beta 1914 1920 1917 1941 C1' U B 44 beta 1936 1942 1939 1961 C1' G B 45 beta 1956 1962 1959 1984 C1' G B 46 beta 1979 1985 1982 2007 C1' G B 47 beta 2002 2008 2005 2030 C1' C B 48 beta 2025 2031 2028 2050 C1' U B 49 beta 2045 2051 2048 2070 C1' A B 50 beta 2065 2071 2068 2092 C1' C B 51 beta 2087 2093 2090 2112 C1' U B 52 beta 2107 2113 2110 2132 C1' G B 53 beta 2127 2133 2130 2155 C1' A B 54 beta 2150 2156 2153 2177 C1' C B 55 beta 2172 2178 2175 2197 C1' C B 56 beta 2192 2198 2195 2217 C1' C B 57 beta 2212 2218 2215 2237 C1' C B 58 beta 2232 2238 2235 2257 C1' G B 59 beta 2252 2258 2255 2280 C1' C B 60 beta 2275 2281 2278 2300 C1' C B 61 beta 2295 2301 2298 2320 C1' U B 62 beta 2315 2321 2318 2340 C1' U B 63 beta 2335 2341 2338 2360 C1' C B 64 beta 2355 2361 2358 2380 C1' A B 65 beta 2375 2381 2378 2402 C1' A B 66 beta 2397 2403 2400 2424 C1' A B 67 beta 2419 2425 2422 2446 C1' C B 68 beta 2441 2447 2444 2466 C1' C B 69 beta 2461 2467 2464 2486 C1' U B 70 beta 2481 2487 2484 2506 C1' A B 71 beta 2501 2507 2504 2528 C1' U B 72 beta 2523 2529 2526 2548 C1' U B 73 beta 2543 2549 2546 2568 C1' U B 74 beta 2563 2569 2566 2588 C1' G B 75 beta 2583 2589 2586 2611 C1' G B 76 beta 2606 2612 2609 2634 C1' A B 77 beta 2629 2635 2632 2656 C1' G B 78 beta 2651 2657 2654 2679 C1' A B 79 beta 2674 2680 2677 2701 C1' C B 80 beta 2696 2702 2699 2721 C1' U B 81 beta 2716 2722 2719 2741 C1' A B 82 beta 2736 2742 2739 2763 C1' U B 83 beta 2758 2764 2761 2783 C1' A B 84 beta 2778 2784 2781 2805 C1' A B 85 beta 2800 2806 2803 2827 C1' G B 86 beta 2822 2828 2825 2850 C1' G B 87 beta 2845 2851 2848 2873 C1' U B 88 beta 2868 2874 2871 2896 C1' CCC B 89 beta 2891 2897 2894 2910 C1' GNG A 120 beta 2909 2911 2922 2965 C1' GNG B 120 beta 2964 2966 2977 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 19 C2' GTP A 22 OK 21 17 20 42 C2' G A 23 OK 44 40 43 65 C2' C A 24 OK 67 63 66 85 C2' C A 25 OK 87 83 86 105 C2' U A 26 OK 107 103 106 125 C2' U A 27 OK 127 123 126 145 C2' A A 28 OK 147 143 146 167 C2' U A 29 OK 169 165 168 187 C2' A A 30 OK 189 185 188 209 C2' C A 31 OK 211 207 210 229 C2' A A 32 OK 231 227 230 251 C2' G A 33 OK 253 249 252 274 C2' G A 34 OK 276 272 275 297 C2' G A 35 OK 299 295 298 320 C2' U A 36 OK 322 318 321 340 C2' A A 37 OK 342 338 341 362 C2' G A 38 OK 364 360 363 385 C2' C A 39 OK 387 383 386 405 C2' A A 40 OK 407 403 406 427 C2' U A 41 OK 429 425 428 447 C2' A A 42 OK 449 445 448 469 C2' A A 43 OK 471 467 470 491 C2' U A 44 OK 493 489 492 511 C2' G A 45 OK 513 509 512 534 C2' G A 46 OK 536 532 535 557 C2' G A 47 OK 559 555 558 580 C2' C A 48 OK 582 578 581 600 C2' U A 49 OK 602 598 601 620 C2' A A 50 OK 622 618 621 642 C2' C A 51 OK 644 640 643 662 C2' U A 52 OK 664 660 663 682 C2' G A 53 OK 684 680 683 705 C2' A A 54 OK 707 703 706 727 C2' C A 55 OK 729 725 728 747 C2' C A 56 OK 749 745 748 767 C2' C A 57 OK 769 765 768 787 C2' C A 58 OK 789 785 788 807 C2' G A 59 OK 809 805 808 830 C2' C A 60 OK 832 828 831 850 C2' C A 61 OK 852 848 851 870 C2' U A 62 OK 872 868 871 890 C2' U A 63 OK 892 888 891 910 C2' C A 64 OK 912 908 911 930 C2' A A 65 OK 932 928 931 952 C2' A A 66 OK 954 950 953 974 C2' A A 67 OK 976 972 975 996 C2' C A 68 OK 998 994 997 1016 C2' C A 69 OK 1018 1014 1017 1036 C2' U A 70 OK 1038 1034 1037 1056 C2' A A 71 OK 1058 1054 1057 1078 C2' U A 72 OK 1080 1076 1079 1098 C2' U A 73 OK 1100 1096 1099 1118 C2' U A 74 OK 1120 1116 1119 1138 C2' G A 75 OK 1140 1136 1139 1161 C2' G A 76 OK 1163 1159 1162 1184 C2' A A 77 OK 1186 1182 1185 1206 C2' G A 78 OK 1208 1204 1207 1229 C2' A A 79 OK 1231 1227 1230 1251 C2' C A 80 OK 1253 1249 1252 1271 C2' U A 81 OK 1273 1269 1272 1291 C2' A A 82 OK 1293 1289 1292 1313 C2' U A 83 OK 1315 1311 1314 1333 C2' A A 84 OK 1335 1331 1334 1355 C2' A A 85 OK 1357 1353 1356 1377 C2' G A 86 OK 1379 1375 1378 1400 C2' G A 87 OK 1402 1398 1401 1423 C2' U A 88 OK 1425 1421 1424 1446 C2' CCC A 89 OK 1448 1444 1447 1467 C2' G B 22 OK 1469 1465 1468 1490 C2' G B 23 OK 1492 1488 1491 1513 C2' C B 24 OK 1515 1511 1514 1533 C2' C B 25 OK 1535 1531 1534 1553 C2' U B 26 OK 1555 1551 1554 1573 C2' U B 27 OK 1575 1571 1574 1593 C2' A B 28 OK 1595 1591 1594 1615 C2' U B 29 OK 1617 1613 1616 1635 C2' A B 30 OK 1637 1633 1636 1657 C2' C B 31 OK 1659 1655 1658 1677 C2' A B 32 OK 1679 1675 1678 1699 C2' G B 33 OK 1701 1697 1700 1722 C2' G B 34 OK 1724 1720 1723 1745 C2' G B 35 OK 1747 1743 1746 1768 C2' U B 36 OK 1770 1766 1769 1788 C2' A B 37 OK 1790 1786 1789 1810 C2' G B 38 OK 1812 1808 1811 1833 C2' C B 39 OK 1835 1831 1834 1853 C2' A B 40 OK 1855 1851 1854 1875 C2' U B 41 OK 1877 1873 1876 1895 C2' A B 42 OK 1897 1893 1896 1917 C2' A B 43 OK 1919 1915 1918 1939 C2' U B 44 OK 1941 1937 1940 1959 C2' G B 45 OK 1961 1957 1960 1982 C2' G B 46 OK 1984 1980 1983 2005 C2' G B 47 OK 2007 2003 2006 2028 C2' C B 48 OK 2030 2026 2029 2048 C2' U B 49 OK 2050 2046 2049 2068 C2' A B 50 OK 2070 2066 2069 2090 C2' C B 51 OK 2092 2088 2091 2110 C2' U B 52 OK 2112 2108 2111 2130 C2' G B 53 OK 2132 2128 2131 2153 C2' A B 54 OK 2155 2151 2154 2175 C2' C B 55 OK 2177 2173 2176 2195 C2' C B 56 OK 2197 2193 2196 2215 C2' C B 57 OK 2217 2213 2216 2235 C2' C B 58 OK 2237 2233 2236 2255 C2' G B 59 OK 2257 2253 2256 2278 C2' C B 60 OK 2280 2276 2279 2298 C2' C B 61 OK 2300 2296 2299 2318 C2' U B 62 OK 2320 2316 2319 2338 C2' U B 63 OK 2340 2336 2339 2358 C2' C B 64 OK 2360 2356 2359 2378 C2' A B 65 OK 2380 2376 2379 2400 C2' A B 66 OK 2402 2398 2401 2422 C2' A B 67 OK 2424 2420 2423 2444 C2' C B 68 OK 2446 2442 2445 2464 C2' C B 69 OK 2466 2462 2465 2484 C2' U B 70 OK 2486 2482 2485 2504 C2' A B 71 OK 2506 2502 2505 2526 C2' U B 72 OK 2528 2524 2527 2546 C2' U B 73 OK 2548 2544 2547 2566 C2' U B 74 OK 2568 2564 2567 2586 C2' G B 75 OK 2588 2584 2587 2609 C2' G B 76 OK 2611 2607 2610 2632 C2' A B 77 OK 2634 2630 2633 2654 C2' G B 78 OK 2656 2652 2655 2677 C2' A B 79 OK 2679 2675 2678 2699 C2' C B 80 OK 2701 2697 2700 2719 C2' U B 81 OK 2721 2717 2720 2739 C2' A B 82 OK 2741 2737 2740 2761 C2' U B 83 OK 2763 2759 2762 2781 C2' A B 84 OK 2783 2779 2782 2803 C2' A B 85 OK 2805 2801 2804 2825 C2' G B 86 OK 2827 2823 2826 2848 C2' G B 87 OK 2850 2846 2849 2871 C2' U B 88 OK 2873 2869 2872 2894 C2' CCC B 89 OK 2896 2892 2895 2922 C2' GNG A 120 2910 2923 2977 C2' GNG B 120 2965 2978 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 17 C3' GTP A 22 OK 15 18 19 40 C3' G A 23 OK 38 41 42 63 C3' C A 24 OK 61 64 65 83 C3' C A 25 OK 81 84 85 103 C3' U A 26 OK 101 104 105 123 C3' U A 27 OK 121 124 125 143 C3' A A 28 OK 141 144 145 165 C3' U A 29 OK 163 166 167 185 C3' A A 30 OK 183 186 187 207 C3' C A 31 OK 205 208 209 227 C3' A A 32 OK 225 228 229 249 C3' G A 33 OK 247 250 251 272 C3' G A 34 OK 270 273 274 295 C3' G A 35 OK 293 296 297 318 C3' U A 36 OK 316 319 320 338 C3' A A 37 OK 336 339 340 360 C3' G A 38 OK 358 361 362 383 C3' C A 39 OK 381 384 385 403 C3' A A 40 OK 401 404 405 425 C3' U A 41 OK 423 426 427 445 C3' A A 42 OK 443 446 447 467 C3' A A 43 OK 465 468 469 489 C3' U A 44 OK 487 490 491 509 C3' G A 45 OK 507 510 511 532 C3' G A 46 OK 530 533 534 555 C3' G A 47 OK 553 556 557 578 C3' C A 48 OK 576 579 580 598 C3' U A 49 OK 596 599 600 618 C3' A A 50 OK 616 619 620 640 C3' C A 51 OK 638 641 642 660 C3' U A 52 OK 658 661 662 680 C3' G A 53 OK 678 681 682 703 C3' A A 54 OK 701 704 705 725 C3' C A 55 OK 723 726 727 745 C3' C A 56 OK 743 746 747 765 C3' C A 57 OK 763 766 767 785 C3' C A 58 OK 783 786 787 805 C3' G A 59 OK 803 806 807 828 C3' C A 60 OK 826 829 830 848 C3' C A 61 OK 846 849 850 868 C3' U A 62 OK 866 869 870 888 C3' U A 63 OK 886 889 890 908 C3' C A 64 OK 906 909 910 928 C3' A A 65 OK 926 929 930 950 C3' A A 66 OK 948 951 952 972 C3' A A 67 OK 970 973 974 994 C3' C A 68 OK 992 995 996 1014 C3' C A 69 OK 1012 1015 1016 1034 C3' U A 70 OK 1032 1035 1036 1054 C3' A A 71 OK 1052 1055 1056 1076 C3' U A 72 OK 1074 1077 1078 1096 C3' U A 73 OK 1094 1097 1098 1116 C3' U A 74 OK 1114 1117 1118 1136 C3' G A 75 OK 1134 1137 1138 1159 C3' G A 76 OK 1157 1160 1161 1182 C3' A A 77 OK 1180 1183 1184 1204 C3' G A 78 OK 1202 1205 1206 1227 C3' A A 79 OK 1225 1228 1229 1249 C3' C A 80 OK 1247 1250 1251 1269 C3' U A 81 OK 1267 1270 1271 1289 C3' A A 82 OK 1287 1290 1291 1311 C3' U A 83 OK 1309 1312 1313 1331 C3' A A 84 OK 1329 1332 1333 1353 C3' A A 85 OK 1351 1354 1355 1375 C3' G A 86 OK 1373 1376 1377 1398 C3' G A 87 OK 1396 1399 1400 1421 C3' U A 88 OK 1419 1422 1423 1444 C3' CCC A 89 OK 1442 1445 1446 1465 C3' G B 22 OK 1463 1466 1467 1488 C3' G B 23 OK 1486 1489 1490 1511 C3' C B 24 OK 1509 1512 1513 1531 C3' C B 25 OK 1529 1532 1533 1551 C3' U B 26 OK 1549 1552 1553 1571 C3' U B 27 OK 1569 1572 1573 1591 C3' A B 28 OK 1589 1592 1593 1613 C3' U B 29 OK 1611 1614 1615 1633 C3' A B 30 OK 1631 1634 1635 1655 C3' C B 31 OK 1653 1656 1657 1675 C3' A B 32 OK 1673 1676 1677 1697 C3' G B 33 OK 1695 1698 1699 1720 C3' G B 34 OK 1718 1721 1722 1743 C3' G B 35 OK 1741 1744 1745 1766 C3' U B 36 OK 1764 1767 1768 1786 C3' A B 37 OK 1784 1787 1788 1808 C3' G B 38 OK 1806 1809 1810 1831 C3' C B 39 OK 1829 1832 1833 1851 C3' A B 40 OK 1849 1852 1853 1873 C3' U B 41 OK 1871 1874 1875 1893 C3' A B 42 OK 1891 1894 1895 1915 C3' A B 43 OK 1913 1916 1917 1937 C3' U B 44 OK 1935 1938 1939 1957 C3' G B 45 OK 1955 1958 1959 1980 C3' G B 46 OK 1978 1981 1982 2003 C3' G B 47 OK 2001 2004 2005 2026 C3' C B 48 OK 2024 2027 2028 2046 C3' U B 49 OK 2044 2047 2048 2066 C3' A B 50 OK 2064 2067 2068 2088 C3' C B 51 OK 2086 2089 2090 2108 C3' U B 52 OK 2106 2109 2110 2128 C3' G B 53 OK 2126 2129 2130 2151 C3' A B 54 OK 2149 2152 2153 2173 C3' C B 55 OK 2171 2174 2175 2193 C3' C B 56 OK 2191 2194 2195 2213 C3' C B 57 OK 2211 2214 2215 2233 C3' C B 58 OK 2231 2234 2235 2253 C3' G B 59 OK 2251 2254 2255 2276 C3' C B 60 OK 2274 2277 2278 2296 C3' C B 61 OK 2294 2297 2298 2316 C3' U B 62 OK 2314 2317 2318 2336 C3' U B 63 OK 2334 2337 2338 2356 C3' C B 64 OK 2354 2357 2358 2376 C3' A B 65 OK 2374 2377 2378 2398 C3' A B 66 OK 2396 2399 2400 2420 C3' A B 67 OK 2418 2421 2422 2442 C3' C B 68 OK 2440 2443 2444 2462 C3' C B 69 OK 2460 2463 2464 2482 C3' U B 70 OK 2480 2483 2484 2502 C3' A B 71 OK 2500 2503 2504 2524 C3' U B 72 OK 2522 2525 2526 2544 C3' U B 73 OK 2542 2545 2546 2564 C3' U B 74 OK 2562 2565 2566 2584 C3' G B 75 OK 2582 2585 2586 2607 C3' G B 76 OK 2605 2608 2609 2630 C3' A B 77 OK 2628 2631 2632 2652 C3' G B 78 OK 2650 2653 2654 2675 C3' A B 79 OK 2673 2676 2677 2697 C3' C B 80 OK 2695 2698 2699 2717 C3' U B 81 OK 2715 2718 2719 2737 C3' A B 82 OK 2735 2738 2739 2759 C3' U B 83 OK 2757 2760 2761 2779 C3' A B 84 OK 2777 2780 2781 2801 C3' A B 85 OK 2799 2802 2803 2823 C3' G B 86 OK 2821 2824 2825 2846 C3' G B 87 OK 2844 2847 2848 2869 C3' U B 88 OK 2867 2870 2871 2892 C3' CCC B 89 OK 2890 2893 2894 2923 C3' GNG A 120 OK 2908 2924 2922 2978 C3' GNG B 120 OK 2963 2979 2977 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 15 C4' GTP A 22 OK 17 14 16 38 C4' G A 23 OK 40 37 39 61 C4' C A 24 OK 63 60 62 81 C4' C A 25 OK 83 80 82 101 C4' U A 26 OK 103 100 102 121 C4' U A 27 OK 123 120 122 141 C4' A A 28 OK 143 140 142 163 C4' U A 29 OK 165 162 164 183 C4' A A 30 OK 185 182 184 205 C4' C A 31 OK 207 204 206 225 C4' A A 32 OK 227 224 226 247 C4' G A 33 OK 249 246 248 270 C4' G A 34 OK 272 269 271 293 C4' G A 35 OK 295 292 294 316 C4' U A 36 OK 318 315 317 336 C4' A A 37 OK 338 335 337 358 C4' G A 38 OK 360 357 359 381 C4' C A 39 OK 383 380 382 401 C4' A A 40 OK 403 400 402 423 C4' U A 41 OK 425 422 424 443 C4' A A 42 OK 445 442 444 465 C4' A A 43 OK 467 464 466 487 C4' U A 44 OK 489 486 488 507 C4' G A 45 OK 509 506 508 530 C4' G A 46 OK 532 529 531 553 C4' G A 47 OK 555 552 554 576 C4' C A 48 OK 578 575 577 596 C4' U A 49 OK 598 595 597 616 C4' A A 50 OK 618 615 617 638 C4' C A 51 OK 640 637 639 658 C4' U A 52 OK 660 657 659 678 C4' G A 53 OK 680 677 679 701 C4' A A 54 OK 703 700 702 723 C4' C A 55 OK 725 722 724 743 C4' C A 56 OK 745 742 744 763 C4' C A 57 OK 765 762 764 783 C4' C A 58 OK 785 782 784 803 C4' G A 59 OK 805 802 804 826 C4' C A 60 OK 828 825 827 846 C4' C A 61 OK 848 845 847 866 C4' U A 62 OK 868 865 867 886 C4' U A 63 OK 888 885 887 906 C4' C A 64 OK 908 905 907 926 C4' A A 65 OK 928 925 927 948 C4' A A 66 OK 950 947 949 970 C4' A A 67 OK 972 969 971 992 C4' C A 68 OK 994 991 993 1012 C4' C A 69 OK 1014 1011 1013 1032 C4' U A 70 OK 1034 1031 1033 1052 C4' A A 71 OK 1054 1051 1053 1074 C4' U A 72 OK 1076 1073 1075 1094 C4' U A 73 OK 1096 1093 1095 1114 C4' U A 74 OK 1116 1113 1115 1134 C4' G A 75 OK 1136 1133 1135 1157 C4' G A 76 OK 1159 1156 1158 1180 C4' A A 77 OK 1182 1179 1181 1202 C4' G A 78 OK 1204 1201 1203 1225 C4' A A 79 OK 1227 1224 1226 1247 C4' C A 80 OK 1249 1246 1248 1267 C4' U A 81 OK 1269 1266 1268 1287 C4' A A 82 OK 1289 1286 1288 1309 C4' U A 83 OK 1311 1308 1310 1329 C4' A A 84 OK 1331 1328 1330 1351 C4' A A 85 OK 1353 1350 1352 1373 C4' G A 86 OK 1375 1372 1374 1396 C4' G A 87 OK 1398 1395 1397 1419 C4' U A 88 OK 1421 1418 1420 1442 C4' CCC A 89 OK 1444 1441 1443 1463 C4' G B 22 OK 1465 1462 1464 1486 C4' G B 23 OK 1488 1485 1487 1509 C4' C B 24 OK 1511 1508 1510 1529 C4' C B 25 OK 1531 1528 1530 1549 C4' U B 26 OK 1551 1548 1550 1569 C4' U B 27 OK 1571 1568 1570 1589 C4' A B 28 OK 1591 1588 1590 1611 C4' U B 29 OK 1613 1610 1612 1631 C4' A B 30 OK 1633 1630 1632 1653 C4' C B 31 OK 1655 1652 1654 1673 C4' A B 32 OK 1675 1672 1674 1695 C4' G B 33 OK 1697 1694 1696 1718 C4' G B 34 OK 1720 1717 1719 1741 C4' G B 35 OK 1743 1740 1742 1764 C4' U B 36 OK 1766 1763 1765 1784 C4' A B 37 OK 1786 1783 1785 1806 C4' G B 38 OK 1808 1805 1807 1829 C4' C B 39 OK 1831 1828 1830 1849 C4' A B 40 OK 1851 1848 1850 1871 C4' U B 41 OK 1873 1870 1872 1891 C4' A B 42 OK 1893 1890 1892 1913 C4' A B 43 OK 1915 1912 1914 1935 C4' U B 44 OK 1937 1934 1936 1955 C4' G B 45 OK 1957 1954 1956 1978 C4' G B 46 OK 1980 1977 1979 2001 C4' G B 47 OK 2003 2000 2002 2024 C4' C B 48 OK 2026 2023 2025 2044 C4' U B 49 OK 2046 2043 2045 2064 C4' A B 50 OK 2066 2063 2065 2086 C4' C B 51 OK 2088 2085 2087 2106 C4' U B 52 OK 2108 2105 2107 2126 C4' G B 53 OK 2128 2125 2127 2149 C4' A B 54 OK 2151 2148 2150 2171 C4' C B 55 OK 2173 2170 2172 2191 C4' C B 56 OK 2193 2190 2192 2211 C4' C B 57 OK 2213 2210 2212 2231 C4' C B 58 OK 2233 2230 2232 2251 C4' G B 59 OK 2253 2250 2252 2274 C4' C B 60 OK 2276 2273 2275 2294 C4' C B 61 OK 2296 2293 2295 2314 C4' U B 62 OK 2316 2313 2315 2334 C4' U B 63 OK 2336 2333 2335 2354 C4' C B 64 OK 2356 2353 2355 2374 C4' A B 65 OK 2376 2373 2375 2396 C4' A B 66 OK 2398 2395 2397 2418 C4' A B 67 OK 2420 2417 2419 2440 C4' C B 68 OK 2442 2439 2441 2460 C4' C B 69 OK 2462 2459 2461 2480 C4' U B 70 OK 2482 2479 2481 2500 C4' A B 71 OK 2502 2499 2501 2522 C4' U B 72 OK 2524 2521 2523 2542 C4' U B 73 OK 2544 2541 2543 2562 C4' U B 74 OK 2564 2561 2563 2582 C4' G B 75 OK 2584 2581 2583 2605 C4' G B 76 OK 2607 2604 2606 2628 C4' A B 77 OK 2630 2627 2629 2650 C4' G B 78 OK 2652 2649 2651 2673 C4' A B 79 OK 2675 2672 2674 2695 C4' C B 80 OK 2697 2694 2696 2715 C4' U B 81 OK 2717 2714 2716 2735 C4' A B 82 OK 2737 2734 2736 2757 C4' U B 83 OK 2759 2756 2758 2777 C4' A B 84 OK 2779 2776 2778 2799 C4' A B 85 OK 2801 2798 2800 2821 C4' G B 86 OK 2823 2820 2822 2844 C4' G B 87 OK 2846 2843 2845 2867 C4' U B 88 OK 2869 2866 2868 2890 C4' CCC B 89 OK 2892 2889 2891 2908 C4' GNG A 120 OK 2923 2907 2909 2963 C4' GNG B 120 OK 2978 2962 2964 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 14 C5' GTP A 22 13 15 37 C5' G A 23 36 38 60 C5' C A 24 59 61 80 C5' C A 25 79 81 100 C5' U A 26 99 101 120 C5' U A 27 119 121 140 C5' A A 28 139 141 162 C5' U A 29 161 163 182 C5' A A 30 181 183 204 C5' C A 31 203 205 224 C5' A A 32 223 225 246 C5' G A 33 245 247 269 C5' G A 34 268 270 292 C5' G A 35 291 293 315 C5' U A 36 314 316 335 C5' A A 37 334 336 357 C5' G A 38 356 358 380 C5' C A 39 379 381 400 C5' A A 40 399 401 422 C5' U A 41 421 423 442 C5' A A 42 441 443 464 C5' A A 43 463 465 486 C5' U A 44 485 487 506 C5' G A 45 505 507 529 C5' G A 46 528 530 552 C5' G A 47 551 553 575 C5' C A 48 574 576 595 C5' U A 49 594 596 615 C5' A A 50 614 616 637 C5' C A 51 636 638 657 C5' U A 52 656 658 677 C5' G A 53 676 678 700 C5' A A 54 699 701 722 C5' C A 55 721 723 742 C5' C A 56 741 743 762 C5' C A 57 761 763 782 C5' C A 58 781 783 802 C5' G A 59 801 803 825 C5' C A 60 824 826 845 C5' C A 61 844 846 865 C5' U A 62 864 866 885 C5' U A 63 884 886 905 C5' C A 64 904 906 925 C5' A A 65 924 926 947 C5' A A 66 946 948 969 C5' A A 67 968 970 991 C5' C A 68 990 992 1011 C5' C A 69 1010 1012 1031 C5' U A 70 1030 1032 1051 C5' A A 71 1050 1052 1073 C5' U A 72 1072 1074 1093 C5' U A 73 1092 1094 1113 C5' U A 74 1112 1114 1133 C5' G A 75 1132 1134 1156 C5' G A 76 1155 1157 1179 C5' A A 77 1178 1180 1201 C5' G A 78 1200 1202 1224 C5' A A 79 1223 1225 1246 C5' C A 80 1245 1247 1266 C5' U A 81 1265 1267 1286 C5' A A 82 1285 1287 1308 C5' U A 83 1307 1309 1328 C5' A A 84 1327 1329 1350 C5' A A 85 1349 1351 1372 C5' G A 86 1371 1373 1395 C5' G A 87 1394 1396 1418 C5' U A 88 1417 1419 1441 C5' CCC A 89 1440 1442 1462 C5' G B 22 1461 1463 1485 C5' G B 23 1484 1486 1508 C5' C B 24 1507 1509 1528 C5' C B 25 1527 1529 1548 C5' U B 26 1547 1549 1568 C5' U B 27 1567 1569 1588 C5' A B 28 1587 1589 1610 C5' U B 29 1609 1611 1630 C5' A B 30 1629 1631 1652 C5' C B 31 1651 1653 1672 C5' A B 32 1671 1673 1694 C5' G B 33 1693 1695 1717 C5' G B 34 1716 1718 1740 C5' G B 35 1739 1741 1763 C5' U B 36 1762 1764 1783 C5' A B 37 1782 1784 1805 C5' G B 38 1804 1806 1828 C5' C B 39 1827 1829 1848 C5' A B 40 1847 1849 1870 C5' U B 41 1869 1871 1890 C5' A B 42 1889 1891 1912 C5' A B 43 1911 1913 1934 C5' U B 44 1933 1935 1954 C5' G B 45 1953 1955 1977 C5' G B 46 1976 1978 2000 C5' G B 47 1999 2001 2023 C5' C B 48 2022 2024 2043 C5' U B 49 2042 2044 2063 C5' A B 50 2062 2064 2085 C5' C B 51 2084 2086 2105 C5' U B 52 2104 2106 2125 C5' G B 53 2124 2126 2148 C5' A B 54 2147 2149 2170 C5' C B 55 2169 2171 2190 C5' C B 56 2189 2191 2210 C5' C B 57 2209 2211 2230 C5' C B 58 2229 2231 2250 C5' G B 59 2249 2251 2273 C5' C B 60 2272 2274 2293 C5' C B 61 2292 2294 2313 C5' U B 62 2312 2314 2333 C5' U B 63 2332 2334 2353 C5' C B 64 2352 2354 2373 C5' A B 65 2372 2374 2395 C5' A B 66 2394 2396 2417 C5' A B 67 2416 2418 2439 C5' C B 68 2438 2440 2459 C5' C B 69 2458 2460 2479 C5' U B 70 2478 2480 2499 C5' A B 71 2498 2500 2521 C5' U B 72 2520 2522 2541 C5' U B 73 2540 2542 2561 C5' U B 74 2560 2562 2581 C5' G B 75 2580 2582 2604 C5' G B 76 2603 2605 2627 C5' A B 77 2626 2628 2649 C5' G B 78 2648 2650 2672 C5' A B 79 2671 2673 2694 C5' C B 80 2693 2695 2714 C5' U B 81 2713 2715 2734 C5' A B 82 2733 2735 2756 C5' U B 83 2755 2757 2776 C5' A B 84 2775 2777 2798 C5' A B 85 2797 2799 2820 C5' G B 86 2819 2821 2843 C5' G B 87 2842 2844 2866 C5' U B 88 2865 2867 2889 C5' CCC B 89 2888 2890 2907 C5' GNG A 120 2906 2908 2962 C5' GNG B 120 2961 2963 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 33 P G A 23 distorted distorted 18 34 35 36 56 P C A 24 distorted distorted 41 57 58 59 76 P C A 25 distorted distorted 64 77 78 79 96 P U A 26 distorted distorted 84 97 98 99 116 P U A 27 distorted distorted 104 117 118 119 136 P A A 28 distorted distorted 124 137 138 139 158 P U A 29 distorted distorted 144 159 160 161 178 P A A 30 distorted distorted 166 179 180 181 200 P C A 31 distorted distorted 186 201 202 203 220 P A A 32 distorted distorted 208 221 222 223 242 P G A 33 distorted distorted 228 243 244 245 265 P G A 34 distorted distorted 250 266 267 268 288 P G A 35 distorted distorted 273 289 290 291 311 P U A 36 distorted distorted 296 312 313 314 331 P A A 37 distorted distorted 319 332 333 334 353 P G A 38 distorted distorted 339 354 355 356 376 P C A 39 distorted distorted 361 377 378 379 396 P A A 40 distorted distorted 384 397 398 399 418 P U A 41 distorted distorted 404 419 420 421 438 P A A 42 distorted distorted 426 439 440 441 460 P A A 43 distorted distorted 446 461 462 463 482 P U A 44 distorted distorted 468 483 484 485 502 P G A 45 distorted distorted 490 503 504 505 525 P G A 46 distorted distorted 510 526 527 528 548 P G A 47 distorted distorted 533 549 550 551 571 P C A 48 distorted distorted 556 572 573 574 591 P U A 49 distorted distorted 579 592 593 594 611 P A A 50 distorted distorted 599 612 613 614 633 P C A 51 distorted distorted 619 634 635 636 653 P U A 52 distorted distorted 641 654 655 656 673 P G A 53 distorted distorted 661 674 675 676 696 P A A 54 distorted distorted 681 697 698 699 718 P C A 55 distorted distorted 704 719 720 721 738 P C A 56 distorted distorted 726 739 740 741 758 P C A 57 distorted distorted 746 759 760 761 778 P C A 58 distorted distorted 766 779 780 781 798 P G A 59 distorted distorted 786 799 800 801 821 P C A 60 distorted distorted 806 822 823 824 841 P C A 61 distorted distorted 829 842 843 844 861 P U A 62 distorted distorted 849 862 863 864 881 P U A 63 distorted distorted 869 882 883 884 901 P C A 64 distorted distorted 889 902 903 904 921 P A A 65 distorted distorted 909 922 923 924 943 P A A 66 distorted distorted 929 944 945 946 965 P A A 67 distorted distorted 951 966 967 968 987 P C A 68 distorted distorted 973 988 989 990 1007 P C A 69 distorted distorted 995 1008 1009 1010 1027 P U A 70 distorted distorted 1015 1028 1029 1030 1047 P A A 71 distorted distorted 1035 1048 1049 1050 1069 P U A 72 distorted distorted 1055 1070 1071 1072 1089 P U A 73 distorted distorted 1077 1090 1091 1092 1109 P U A 74 distorted distorted 1097 1110 1111 1112 1129 P G A 75 distorted distorted 1117 1130 1131 1132 1152 P G A 76 distorted distorted 1137 1153 1154 1155 1175 P A A 77 distorted distorted 1160 1176 1177 1178 1197 P G A 78 distorted distorted 1183 1198 1199 1200 1220 P A A 79 distorted distorted 1205 1221 1222 1223 1242 P C A 80 distorted distorted 1228 1243 1244 1245 1262 P U A 81 distorted distorted 1250 1263 1264 1265 1282 P A A 82 distorted distorted 1270 1283 1284 1285 1304 P U A 83 distorted distorted 1290 1305 1306 1307 1324 P A A 84 distorted distorted 1312 1325 1326 1327 1346 P A A 85 distorted distorted 1332 1347 1348 1349 1368 P G A 86 distorted distorted 1354 1369 1370 1371 1391 P G A 87 distorted distorted 1376 1392 1393 1394 1414 P U A 88 distorted distorted 1399 1415 1416 1417 1437 P CCC A 89 distorted distorted 1422 1438 1439 1440 1458 P G B 22 distorted distorted 1459 1460 1461 1481 P G B 23 distorted distorted 1466 1482 1483 1484 1504 P C B 24 distorted distorted 1489 1505 1506 1507 1524 P C B 25 distorted distorted 1512 1525 1526 1527 1544 P U B 26 distorted distorted 1532 1545 1546 1547 1564 P U B 27 distorted distorted 1552 1565 1566 1567 1584 P A B 28 distorted distorted 1572 1585 1586 1587 1606 P U B 29 distorted distorted 1592 1607 1608 1609 1626 P A B 30 distorted distorted 1614 1627 1628 1629 1648 P C B 31 distorted distorted 1634 1649 1650 1651 1668 P A B 32 distorted distorted 1656 1669 1670 1671 1690 P G B 33 distorted distorted 1676 1691 1692 1693 1713 P G B 34 distorted distorted 1698 1714 1715 1716 1736 P G B 35 distorted distorted 1721 1737 1738 1739 1759 P U B 36 distorted distorted 1744 1760 1761 1762 1779 P A B 37 distorted distorted 1767 1780 1781 1782 1801 P G B 38 distorted distorted 1787 1802 1803 1804 1824 P C B 39 distorted distorted 1809 1825 1826 1827 1844 P A B 40 distorted distorted 1832 1845 1846 1847 1866 P U B 41 distorted distorted 1852 1867 1868 1869 1886 P A B 42 distorted distorted 1874 1887 1888 1889 1908 P A B 43 distorted distorted 1894 1909 1910 1911 1930 P U B 44 distorted distorted 1916 1931 1932 1933 1950 P G B 45 distorted distorted 1938 1951 1952 1953 1973 P G B 46 distorted distorted 1958 1974 1975 1976 1996 P G B 47 distorted distorted 1981 1997 1998 1999 2019 P C B 48 distorted distorted 2004 2020 2021 2022 2039 P U B 49 distorted distorted 2027 2040 2041 2042 2059 P A B 50 distorted distorted 2047 2060 2061 2062 2081 P C B 51 distorted distorted 2067 2082 2083 2084 2101 P U B 52 distorted distorted 2089 2102 2103 2104 2121 P G B 53 distorted distorted 2109 2122 2123 2124 2144 P A B 54 distorted distorted 2129 2145 2146 2147 2166 P C B 55 distorted distorted 2152 2167 2168 2169 2186 P C B 56 distorted distorted 2174 2187 2188 2189 2206 P C B 57 distorted distorted 2194 2207 2208 2209 2226 P C B 58 distorted distorted 2214 2227 2228 2229 2246 P G B 59 distorted distorted 2234 2247 2248 2249 2269 P C B 60 distorted distorted 2254 2270 2271 2272 2289 P C B 61 distorted distorted 2277 2290 2291 2292 2309 P U B 62 distorted distorted 2297 2310 2311 2312 2329 P U B 63 distorted distorted 2317 2330 2331 2332 2349 P C B 64 distorted distorted 2337 2350 2351 2352 2369 P A B 65 distorted distorted 2357 2370 2371 2372 2391 P A B 66 distorted distorted 2377 2392 2393 2394 2413 P A B 67 distorted distorted 2399 2414 2415 2416 2435 P C B 68 distorted distorted 2421 2436 2437 2438 2455 P C B 69 distorted distorted 2443 2456 2457 2458 2475 P U B 70 distorted distorted 2463 2476 2477 2478 2495 P A B 71 distorted distorted 2483 2496 2497 2498 2517 P U B 72 distorted distorted 2503 2518 2519 2520 2537 P U B 73 distorted distorted 2525 2538 2539 2540 2557 P U B 74 distorted distorted 2545 2558 2559 2560 2577 P G B 75 distorted distorted 2565 2578 2579 2580 2600 P G B 76 distorted distorted 2585 2601 2602 2603 2623 P A B 77 distorted distorted 2608 2624 2625 2626 2645 P G B 78 distorted distorted 2631 2646 2647 2648 2668 P A B 79 distorted distorted 2653 2669 2670 2671 2690 P C B 80 distorted distorted 2676 2691 2692 2693 2710 P U B 81 distorted distorted 2698 2711 2712 2713 2730 P A B 82 distorted distorted 2718 2731 2732 2733 2752 P U B 83 distorted distorted 2738 2753 2754 2755 2772 P A B 84 distorted distorted 2760 2773 2774 2775 2794 P A B 85 distorted distorted 2780 2795 2796 2797 2816 P G B 86 distorted distorted 2802 2817 2818 2819 2839 P G B 87 distorted distorted 2824 2840 2841 2842 2862 P U B 88 distorted distorted 2847 2863 2864 2865 2885 P CCC B 89 distorted distorted 2870 2886 2887 2888 ---------------------------------------------------------------------------------