ID code: '3P22' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 21 C1' GTP A 1 beta 16 22 19 44 C1' G A 2 beta 39 45 42 67 C1' C A 3 beta 62 68 65 87 C1' U A 4 beta 82 88 85 107 C1' G A 5 beta 102 108 105 130 C1' G A 6 beta 125 131 128 153 C1' G A 7 beta 148 154 151 176 C1' U A 8 beta 171 177 174 196 C1' U A 9 beta 191 197 194 216 C1' U A 10 beta 211 217 214 236 C1' U A 11 beta 231 237 234 256 C1' U A 12 beta 251 257 254 276 C1' C A 13 beta 271 277 274 296 C1' C A 14 beta 291 297 294 316 C1' U A 15 beta 311 317 314 336 C1' U A 16 beta 331 337 334 356 C1' C A 17 beta 351 357 354 376 C1' G A 18 beta 371 377 374 399 C1' A A 19 beta 394 400 397 421 C1' A A 20 beta 416 422 419 443 C1' A A 21 beta 438 444 441 465 C1' G A 22 beta 460 466 463 488 C1' A A 23 beta 483 489 486 510 C1' A A 24 beta 505 511 508 532 C1' G A 25 beta 527 533 530 555 C1' G A 26 beta 550 556 553 578 C1' U A 27 beta 573 579 576 598 C1' U A 28 beta 593 599 596 618 C1' U A 29 beta 613 619 616 638 C1' U A 30 beta 633 639 636 658 C1' U A 31 beta 653 659 656 678 C1' A A 32 beta 673 679 676 700 C1' U A 33 beta 695 701 698 720 C1' C A 34 beta 715 721 718 740 C1' C A 35 beta 735 741 738 760 C1' C A 36 beta 755 761 758 780 C1' A A 37 beta 775 781 778 802 C1' G A 38 beta 797 803 800 825 C1' U A 39 beta 820 826 823 845 C1' C A 40 beta 840 846 843 863 C1' A B 1 beta 858 864 861 885 C1' A B 2 beta 880 886 883 907 C1' A B 3 beta 902 908 905 929 C1' A B 4 beta 924 930 927 951 C1' A B 5 beta 946 952 949 973 C1' A B 6 beta 968 974 971 995 C1' A B 7 beta 990 996 993 1017 C1' A B 8 beta 1012 1018 1015 1039 C1' A B 9 beta 1034 1040 1037 1071 C1' GTP C 1 beta 1066 1072 1069 1094 C1' G C 2 beta 1089 1095 1092 1117 C1' C C 3 beta 1112 1118 1115 1137 C1' U C 4 beta 1132 1138 1135 1157 C1' G C 5 beta 1152 1158 1155 1180 C1' G C 6 beta 1175 1181 1178 1203 C1' G C 7 beta 1198 1204 1201 1226 C1' U C 8 beta 1221 1227 1224 1246 C1' U C 9 beta 1241 1247 1244 1266 C1' U C 10 beta 1261 1267 1264 1286 C1' U C 11 beta 1281 1287 1284 1306 C1' U C 12 beta 1301 1307 1304 1326 C1' C C 13 beta 1321 1327 1324 1346 C1' C C 14 beta 1341 1347 1344 1366 C1' U C 15 beta 1361 1367 1364 1386 C1' U C 16 beta 1381 1387 1384 1406 C1' C C 17 beta 1401 1407 1404 1426 C1' G C 18 beta 1421 1427 1424 1449 C1' A C 19 beta 1444 1450 1447 1471 C1' A C 20 beta 1466 1472 1469 1493 C1' A C 21 beta 1488 1494 1491 1515 C1' G C 22 beta 1510 1516 1513 1538 C1' A C 23 beta 1533 1539 1536 1560 C1' A C 24 beta 1555 1561 1558 1582 C1' G C 25 beta 1577 1583 1580 1605 C1' G C 26 beta 1600 1606 1603 1628 C1' U C 27 beta 1623 1629 1626 1648 C1' U C 28 beta 1643 1649 1646 1668 C1' U C 29 beta 1663 1669 1666 1688 C1' U C 30 beta 1683 1689 1686 1708 C1' U C 31 beta 1703 1709 1706 1728 C1' A C 32 beta 1723 1729 1726 1750 C1' U C 33 beta 1745 1751 1748 1770 C1' C C 34 beta 1765 1771 1768 1790 C1' C C 35 beta 1785 1791 1788 1810 C1' C C 36 beta 1805 1811 1808 1830 C1' A C 37 beta 1825 1831 1828 1852 C1' G C 38 beta 1847 1853 1850 1875 C1' U C 39 beta 1870 1876 1873 1895 C1' C C 40 beta 1890 1896 1893 1913 C1' A D 1 beta 1908 1914 1911 1935 C1' A D 2 beta 1930 1936 1933 1957 C1' A D 3 beta 1952 1958 1955 1979 C1' A D 4 beta 1974 1980 1977 2001 C1' A D 5 beta 1996 2002 1999 2023 C1' A D 6 beta 2018 2024 2021 2045 C1' A D 7 beta 2040 2046 2043 2067 C1' A D 8 beta 2062 2068 2065 2099 C1' GTP E 1 beta 2094 2100 2097 2122 C1' G E 2 beta 2117 2123 2120 2145 C1' C E 3 beta 2140 2146 2143 2165 C1' U E 4 beta 2160 2166 2163 2185 C1' G E 5 beta 2180 2186 2183 2208 C1' G E 6 beta 2203 2209 2206 2231 C1' G E 7 beta 2226 2232 2229 2254 C1' U E 8 beta 2249 2255 2252 2274 C1' U E 9 beta 2269 2275 2272 2294 C1' U E 10 beta 2289 2295 2292 2314 C1' U E 11 beta 2309 2315 2312 2334 C1' U E 12 beta 2329 2335 2332 2354 C1' C E 13 beta 2349 2355 2352 2374 C1' C E 14 beta 2369 2375 2372 2394 C1' U E 15 beta 2389 2395 2392 2414 C1' U E 16 beta 2409 2415 2412 2434 C1' C E 17 beta 2429 2435 2432 2454 C1' G E 18 beta 2449 2455 2452 2477 C1' A E 19 beta 2472 2478 2475 2499 C1' A E 20 beta 2494 2500 2497 2521 C1' A E 21 beta 2516 2522 2519 2543 C1' G E 22 beta 2538 2544 2541 2566 C1' A E 23 beta 2561 2567 2564 2588 C1' A E 24 beta 2583 2589 2586 2610 C1' G E 25 beta 2605 2611 2608 2633 C1' G E 26 beta 2628 2634 2631 2656 C1' U E 27 beta 2651 2657 2654 2676 C1' U E 28 beta 2671 2677 2674 2696 C1' U E 29 beta 2691 2697 2694 2716 C1' U E 30 beta 2711 2717 2714 2736 C1' U E 31 beta 2731 2737 2734 2756 C1' A E 32 beta 2751 2757 2754 2778 C1' U E 33 beta 2773 2779 2776 2798 C1' C E 34 beta 2793 2799 2796 2818 C1' C E 35 beta 2813 2819 2816 2838 C1' C E 36 beta 2833 2839 2836 2858 C1' A E 37 beta 2853 2859 2856 2880 C1' G E 38 beta 2875 2881 2878 2903 C1' U E 39 beta 2898 2904 2901 2923 C1' C E 40 beta 2918 2924 2921 2941 C1' A F 1 beta 2936 2942 2939 2963 C1' A F 2 beta 2958 2964 2961 2985 C1' A F 3 beta 2980 2986 2983 3007 C1' A F 4 beta 3002 3008 3005 3029 C1' A F 5 beta 3024 3030 3027 3051 C1' A F 6 beta 3046 3052 3049 3073 C1' A F 7 beta 3068 3074 3071 3095 C1' A F 8 beta 3090 3096 3093 3117 C1' A F 9 beta 3112 3118 3115 3149 C1' GTP G 1 beta 3144 3150 3147 3172 C1' G G 2 beta 3167 3173 3170 3195 C1' C G 3 beta 3190 3196 3193 3215 C1' U G 4 beta 3210 3216 3213 3235 C1' G G 5 beta 3230 3236 3233 3258 C1' G G 6 beta 3253 3259 3256 3281 C1' G G 7 beta 3276 3282 3279 3304 C1' U G 8 beta 3299 3305 3302 3324 C1' U G 9 beta 3319 3325 3322 3344 C1' U G 10 beta 3339 3345 3342 3364 C1' U G 11 beta 3359 3365 3362 3384 C1' U G 12 beta 3379 3385 3382 3404 C1' C G 13 beta 3399 3405 3402 3424 C1' C G 14 beta 3419 3425 3422 3444 C1' U G 15 beta 3439 3445 3442 3464 C1' U G 16 beta 3459 3465 3462 3484 C1' C G 17 beta 3479 3485 3482 3504 C1' G G 18 beta 3499 3505 3502 3527 C1' A G 19 beta 3522 3528 3525 3549 C1' A G 20 beta 3544 3550 3547 3571 C1' A G 21 beta 3566 3572 3569 3593 C1' G G 22 beta 3588 3594 3591 3616 C1' A G 23 beta 3611 3617 3614 3638 C1' A G 24 beta 3633 3639 3636 3660 C1' G G 25 beta 3655 3661 3658 3683 C1' G G 26 beta 3678 3684 3681 3706 C1' U G 27 beta 3701 3707 3704 3726 C1' U G 28 beta 3721 3727 3724 3746 C1' U G 29 beta 3741 3747 3744 3766 C1' U G 30 beta 3761 3767 3764 3786 C1' U G 31 beta 3781 3787 3784 3806 C1' A G 32 beta 3801 3807 3804 3828 C1' U G 33 beta 3823 3829 3826 3848 C1' C G 34 beta 3843 3849 3846 3868 C1' C G 35 beta 3863 3869 3866 3888 C1' C G 36 beta 3883 3889 3886 3908 C1' A G 37 beta 3903 3909 3906 3930 C1' G G 38 beta 3925 3931 3928 3953 C1' U G 39 beta 3948 3954 3951 3973 C1' C G 40 beta 3968 3974 3971 3991 C1' A H 1 beta 3986 3992 3989 4013 C1' A H 2 beta 4008 4014 4011 4035 C1' A H 3 beta 4030 4036 4033 4057 C1' A H 4 beta 4052 4058 4055 4079 C1' A H 5 beta 4074 4080 4077 4101 C1' A H 6 beta 4096 4102 4099 4123 C1' A H 7 beta 4118 4124 4121 4145 C1' A H 8 beta 4140 4146 4143 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 19 C2' GTP A 1 OK 21 17 20 42 C2' G A 2 OK 44 40 43 65 C2' C A 3 OK 67 63 66 85 C2' U A 4 OK 87 83 86 105 C2' G A 5 OK 107 103 106 128 C2' G A 6 OK 130 126 129 151 C2' G A 7 OK 153 149 152 174 C2' U A 8 OK 176 172 175 194 C2' U A 9 OK 196 192 195 214 C2' U A 10 OK 216 212 215 234 C2' U A 11 OK 236 232 235 254 C2' U A 12 OK 256 252 255 274 C2' C A 13 OK 276 272 275 294 C2' C A 14 OK 296 292 295 314 C2' U A 15 OK 316 312 315 334 C2' U A 16 OK 336 332 335 354 C2' C A 17 OK 356 352 355 374 C2' G A 18 OK 376 372 375 397 C2' A A 19 OK 399 395 398 419 C2' A A 20 OK 421 417 420 441 C2' A A 21 OK 443 439 442 463 C2' G A 22 OK 465 461 464 486 C2' A A 23 OK 488 484 487 508 C2' A A 24 OK 510 506 509 530 C2' G A 25 OK 532 528 531 553 C2' G A 26 OK 555 551 554 576 C2' U A 27 OK 578 574 577 596 C2' U A 28 OK 598 594 597 616 C2' U A 29 OK 618 614 617 636 C2' U A 30 OK 638 634 637 656 C2' U A 31 OK 658 654 657 676 C2' A A 32 OK 678 674 677 698 C2' U A 33 OK 700 696 699 718 C2' C A 34 OK 720 716 719 738 C2' C A 35 OK 740 736 739 758 C2' C A 36 OK 760 756 759 778 C2' A A 37 OK 780 776 779 800 C2' G A 38 OK 802 798 801 823 C2' U A 39 OK 825 821 824 843 C2' C A 40 OK 845 841 844 861 C2' A B 1 OK 863 859 862 883 C2' A B 2 OK 885 881 884 905 C2' A B 3 OK 907 903 906 927 C2' A B 4 OK 929 925 928 949 C2' A B 5 OK 951 947 950 971 C2' A B 6 OK 973 969 972 993 C2' A B 7 OK 995 991 994 1015 C2' A B 8 OK 1017 1013 1016 1037 C2' A B 9 OK 1039 1035 1038 1069 C2' GTP C 1 OK 1071 1067 1070 1092 C2' G C 2 OK 1094 1090 1093 1115 C2' C C 3 OK 1117 1113 1116 1135 C2' U C 4 OK 1137 1133 1136 1155 C2' G C 5 OK 1157 1153 1156 1178 C2' G C 6 OK 1180 1176 1179 1201 C2' G C 7 OK 1203 1199 1202 1224 C2' U C 8 OK 1226 1222 1225 1244 C2' U C 9 OK 1246 1242 1245 1264 C2' U C 10 OK 1266 1262 1265 1284 C2' U C 11 OK 1286 1282 1285 1304 C2' U C 12 OK 1306 1302 1305 1324 C2' C C 13 OK 1326 1322 1325 1344 C2' C C 14 OK 1346 1342 1345 1364 C2' U C 15 OK 1366 1362 1365 1384 C2' U C 16 OK 1386 1382 1385 1404 C2' C C 17 OK 1406 1402 1405 1424 C2' G C 18 OK 1426 1422 1425 1447 C2' A C 19 OK 1449 1445 1448 1469 C2' A C 20 OK 1471 1467 1470 1491 C2' A C 21 OK 1493 1489 1492 1513 C2' G C 22 OK 1515 1511 1514 1536 C2' A C 23 OK 1538 1534 1537 1558 C2' A C 24 OK 1560 1556 1559 1580 C2' G C 25 OK 1582 1578 1581 1603 C2' G C 26 OK 1605 1601 1604 1626 C2' U C 27 OK 1628 1624 1627 1646 C2' U C 28 OK 1648 1644 1647 1666 C2' U C 29 OK 1668 1664 1667 1686 C2' U C 30 OK 1688 1684 1687 1706 C2' U C 31 OK 1708 1704 1707 1726 C2' A C 32 OK 1728 1724 1727 1748 C2' U C 33 OK 1750 1746 1749 1768 C2' C C 34 OK 1770 1766 1769 1788 C2' C C 35 OK 1790 1786 1789 1808 C2' C C 36 OK 1810 1806 1809 1828 C2' A C 37 OK 1830 1826 1829 1850 C2' G C 38 OK 1852 1848 1851 1873 C2' U C 39 OK 1875 1871 1874 1893 C2' C C 40 OK 1895 1891 1894 1911 C2' A D 1 OK 1913 1909 1912 1933 C2' A D 2 OK 1935 1931 1934 1955 C2' A D 3 OK 1957 1953 1956 1977 C2' A D 4 OK 1979 1975 1978 1999 C2' A D 5 OK 2001 1997 2000 2021 C2' A D 6 OK 2023 2019 2022 2043 C2' A D 7 OK 2045 2041 2044 2065 C2' A D 8 OK 2067 2063 2066 2097 C2' GTP E 1 OK 2099 2095 2098 2120 C2' G E 2 OK 2122 2118 2121 2143 C2' C E 3 OK 2145 2141 2144 2163 C2' U E 4 OK 2165 2161 2164 2183 C2' G E 5 OK 2185 2181 2184 2206 C2' G E 6 OK 2208 2204 2207 2229 C2' G E 7 OK 2231 2227 2230 2252 C2' U E 8 OK 2254 2250 2253 2272 C2' U E 9 OK 2274 2270 2273 2292 C2' U E 10 OK 2294 2290 2293 2312 C2' U E 11 OK 2314 2310 2313 2332 C2' U E 12 OK 2334 2330 2333 2352 C2' C E 13 OK 2354 2350 2353 2372 C2' C E 14 OK 2374 2370 2373 2392 C2' U E 15 OK 2394 2390 2393 2412 C2' U E 16 OK 2414 2410 2413 2432 C2' C E 17 OK 2434 2430 2433 2452 C2' G E 18 OK 2454 2450 2453 2475 C2' A E 19 OK 2477 2473 2476 2497 C2' A E 20 OK 2499 2495 2498 2519 C2' A E 21 OK 2521 2517 2520 2541 C2' G E 22 OK 2543 2539 2542 2564 C2' A E 23 OK 2566 2562 2565 2586 C2' A E 24 OK 2588 2584 2587 2608 C2' G E 25 OK 2610 2606 2609 2631 C2' G E 26 OK 2633 2629 2632 2654 C2' U E 27 OK 2656 2652 2655 2674 C2' U E 28 OK 2676 2672 2675 2694 C2' U E 29 OK 2696 2692 2695 2714 C2' U E 30 OK 2716 2712 2715 2734 C2' U E 31 OK 2736 2732 2735 2754 C2' A E 32 OK 2756 2752 2755 2776 C2' U E 33 OK 2778 2774 2777 2796 C2' C E 34 OK 2798 2794 2797 2816 C2' C E 35 OK 2818 2814 2817 2836 C2' C E 36 OK 2838 2834 2837 2856 C2' A E 37 OK 2858 2854 2857 2878 C2' G E 38 OK 2880 2876 2879 2901 C2' U E 39 OK 2903 2899 2902 2921 C2' C E 40 OK 2923 2919 2922 2939 C2' A F 1 OK 2941 2937 2940 2961 C2' A F 2 OK 2963 2959 2962 2983 C2' A F 3 OK 2985 2981 2984 3005 C2' A F 4 OK 3007 3003 3006 3027 C2' A F 5 OK 3029 3025 3028 3049 C2' A F 6 OK 3051 3047 3050 3071 C2' A F 7 OK 3073 3069 3072 3093 C2' A F 8 OK 3095 3091 3094 3115 C2' A F 9 OK 3117 3113 3116 3147 C2' GTP G 1 OK 3149 3145 3148 3170 C2' G G 2 OK 3172 3168 3171 3193 C2' C G 3 OK 3195 3191 3194 3213 C2' U G 4 OK 3215 3211 3214 3233 C2' G G 5 OK 3235 3231 3234 3256 C2' G G 6 OK 3258 3254 3257 3279 C2' G G 7 OK 3281 3277 3280 3302 C2' U G 8 OK 3304 3300 3303 3322 C2' U G 9 OK 3324 3320 3323 3342 C2' U G 10 OK 3344 3340 3343 3362 C2' U G 11 OK 3364 3360 3363 3382 C2' U G 12 OK 3384 3380 3383 3402 C2' C G 13 OK 3404 3400 3403 3422 C2' C G 14 OK 3424 3420 3423 3442 C2' U G 15 OK 3444 3440 3443 3462 C2' U G 16 OK 3464 3460 3463 3482 C2' C G 17 OK 3484 3480 3483 3502 C2' G G 18 OK 3504 3500 3503 3525 C2' A G 19 OK 3527 3523 3526 3547 C2' A G 20 OK 3549 3545 3548 3569 C2' A G 21 OK 3571 3567 3570 3591 C2' G G 22 OK 3593 3589 3592 3614 C2' A G 23 OK 3616 3612 3615 3636 C2' A G 24 OK 3638 3634 3637 3658 C2' G G 25 OK 3660 3656 3659 3681 C2' G G 26 OK 3683 3679 3682 3704 C2' U G 27 OK 3706 3702 3705 3724 C2' U G 28 OK 3726 3722 3725 3744 C2' U G 29 OK 3746 3742 3745 3764 C2' U G 30 OK 3766 3762 3765 3784 C2' U G 31 OK 3786 3782 3785 3804 C2' A G 32 OK 3806 3802 3805 3826 C2' U G 33 OK 3828 3824 3827 3846 C2' C G 34 OK 3848 3844 3847 3866 C2' C G 35 OK 3868 3864 3867 3886 C2' C G 36 OK 3888 3884 3887 3906 C2' A G 37 OK 3908 3904 3907 3928 C2' G G 38 OK 3930 3926 3929 3951 C2' U G 39 OK 3953 3949 3952 3971 C2' C G 40 OK 3973 3969 3972 3989 C2' A H 1 OK 3991 3987 3990 4011 C2' A H 2 OK 4013 4009 4012 4033 C2' A H 3 OK 4035 4031 4034 4055 C2' A H 4 OK 4057 4053 4056 4077 C2' A H 5 OK 4079 4075 4078 4099 C2' A H 6 OK 4101 4097 4100 4121 C2' A H 7 OK 4123 4119 4122 4143 C2' A H 8 OK 4145 4141 4144 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 17 C3' GTP A 1 OK 15 18 19 40 C3' G A 2 OK 38 41 42 63 C3' C A 3 OK 61 64 65 83 C3' U A 4 OK 81 84 85 103 C3' G A 5 OK 101 104 105 126 C3' G A 6 OK 124 127 128 149 C3' G A 7 OK 147 150 151 172 C3' U A 8 OK 170 173 174 192 C3' U A 9 OK 190 193 194 212 C3' U A 10 OK 210 213 214 232 C3' U A 11 OK 230 233 234 252 C3' U A 12 OK 250 253 254 272 C3' C A 13 OK 270 273 274 292 C3' C A 14 OK 290 293 294 312 C3' U A 15 OK 310 313 314 332 C3' U A 16 OK 330 333 334 352 C3' C A 17 OK 350 353 354 372 C3' G A 18 OK 370 373 374 395 C3' A A 19 OK 393 396 397 417 C3' A A 20 OK 415 418 419 439 C3' A A 21 OK 437 440 441 461 C3' G A 22 OK 459 462 463 484 C3' A A 23 OK 482 485 486 506 C3' A A 24 OK 504 507 508 528 C3' G A 25 OK 526 529 530 551 C3' G A 26 OK 549 552 553 574 C3' U A 27 OK 572 575 576 594 C3' U A 28 OK 592 595 596 614 C3' U A 29 OK 612 615 616 634 C3' U A 30 OK 632 635 636 654 C3' U A 31 OK 652 655 656 674 C3' A A 32 OK 672 675 676 696 C3' U A 33 OK 694 697 698 716 C3' C A 34 OK 714 717 718 736 C3' C A 35 OK 734 737 738 756 C3' C A 36 OK 754 757 758 776 C3' A A 37 OK 774 777 778 798 C3' G A 38 OK 796 799 800 821 C3' U A 39 OK 819 822 823 841 C3' C A 40 OK 839 842 843 859 C3' A B 1 OK 857 860 861 881 C3' A B 2 OK 879 882 883 903 C3' A B 3 OK 901 904 905 925 C3' A B 4 OK 923 926 927 947 C3' A B 5 OK 945 948 949 969 C3' A B 6 OK 967 970 971 991 C3' A B 7 OK 989 992 993 1013 C3' A B 8 OK 1011 1014 1015 1035 C3' A B 9 OK 1033 1036 1037 1067 C3' GTP C 1 OK 1065 1068 1069 1090 C3' G C 2 OK 1088 1091 1092 1113 C3' C C 3 OK 1111 1114 1115 1133 C3' U C 4 OK 1131 1134 1135 1153 C3' G C 5 OK 1151 1154 1155 1176 C3' G C 6 OK 1174 1177 1178 1199 C3' G C 7 OK 1197 1200 1201 1222 C3' U C 8 OK 1220 1223 1224 1242 C3' U C 9 OK 1240 1243 1244 1262 C3' U C 10 OK 1260 1263 1264 1282 C3' U C 11 OK 1280 1283 1284 1302 C3' U C 12 OK 1300 1303 1304 1322 C3' C C 13 OK 1320 1323 1324 1342 C3' C C 14 OK 1340 1343 1344 1362 C3' U C 15 OK 1360 1363 1364 1382 C3' U C 16 OK 1380 1383 1384 1402 C3' C C 17 OK 1400 1403 1404 1422 C3' G C 18 OK 1420 1423 1424 1445 C3' A C 19 OK 1443 1446 1447 1467 C3' A C 20 OK 1465 1468 1469 1489 C3' A C 21 OK 1487 1490 1491 1511 C3' G C 22 OK 1509 1512 1513 1534 C3' A C 23 OK 1532 1535 1536 1556 C3' A C 24 OK 1554 1557 1558 1578 C3' G C 25 OK 1576 1579 1580 1601 C3' G C 26 OK 1599 1602 1603 1624 C3' U C 27 OK 1622 1625 1626 1644 C3' U C 28 OK 1642 1645 1646 1664 C3' U C 29 OK 1662 1665 1666 1684 C3' U C 30 OK 1682 1685 1686 1704 C3' U C 31 OK 1702 1705 1706 1724 C3' A C 32 OK 1722 1725 1726 1746 C3' U C 33 OK 1744 1747 1748 1766 C3' C C 34 OK 1764 1767 1768 1786 C3' C C 35 OK 1784 1787 1788 1806 C3' C C 36 OK 1804 1807 1808 1826 C3' A C 37 OK 1824 1827 1828 1848 C3' G C 38 OK 1846 1849 1850 1871 C3' U C 39 OK 1869 1872 1873 1891 C3' C C 40 OK 1889 1892 1893 1909 C3' A D 1 OK 1907 1910 1911 1931 C3' A D 2 OK 1929 1932 1933 1953 C3' A D 3 OK 1951 1954 1955 1975 C3' A D 4 OK 1973 1976 1977 1997 C3' A D 5 OK 1995 1998 1999 2019 C3' A D 6 OK 2017 2020 2021 2041 C3' A D 7 OK 2039 2042 2043 2063 C3' A D 8 OK 2061 2064 2065 2095 C3' GTP E 1 OK 2093 2096 2097 2118 C3' G E 2 OK 2116 2119 2120 2141 C3' C E 3 OK 2139 2142 2143 2161 C3' U E 4 OK 2159 2162 2163 2181 C3' G E 5 OK 2179 2182 2183 2204 C3' G E 6 OK 2202 2205 2206 2227 C3' G E 7 OK 2225 2228 2229 2250 C3' U E 8 OK 2248 2251 2252 2270 C3' U E 9 OK 2268 2271 2272 2290 C3' U E 10 OK 2288 2291 2292 2310 C3' U E 11 OK 2308 2311 2312 2330 C3' U E 12 OK 2328 2331 2332 2350 C3' C E 13 OK 2348 2351 2352 2370 C3' C E 14 OK 2368 2371 2372 2390 C3' U E 15 OK 2388 2391 2392 2410 C3' U E 16 OK 2408 2411 2412 2430 C3' C E 17 OK 2428 2431 2432 2450 C3' G E 18 OK 2448 2451 2452 2473 C3' A E 19 OK 2471 2474 2475 2495 C3' A E 20 OK 2493 2496 2497 2517 C3' A E 21 OK 2515 2518 2519 2539 C3' G E 22 OK 2537 2540 2541 2562 C3' A E 23 OK 2560 2563 2564 2584 C3' A E 24 OK 2582 2585 2586 2606 C3' G E 25 OK 2604 2607 2608 2629 C3' G E 26 OK 2627 2630 2631 2652 C3' U E 27 OK 2650 2653 2654 2672 C3' U E 28 OK 2670 2673 2674 2692 C3' U E 29 OK 2690 2693 2694 2712 C3' U E 30 OK 2710 2713 2714 2732 C3' U E 31 OK 2730 2733 2734 2752 C3' A E 32 OK 2750 2753 2754 2774 C3' U E 33 OK 2772 2775 2776 2794 C3' C E 34 OK 2792 2795 2796 2814 C3' C E 35 OK 2812 2815 2816 2834 C3' C E 36 OK 2832 2835 2836 2854 C3' A E 37 OK 2852 2855 2856 2876 C3' G E 38 OK 2874 2877 2878 2899 C3' U E 39 OK 2897 2900 2901 2919 C3' C E 40 OK 2917 2920 2921 2937 C3' A F 1 OK 2935 2938 2939 2959 C3' A F 2 OK 2957 2960 2961 2981 C3' A F 3 OK 2979 2982 2983 3003 C3' A F 4 OK 3001 3004 3005 3025 C3' A F 5 OK 3023 3026 3027 3047 C3' A F 6 OK 3045 3048 3049 3069 C3' A F 7 OK 3067 3070 3071 3091 C3' A F 8 OK 3089 3092 3093 3113 C3' A F 9 OK 3111 3114 3115 3145 C3' GTP G 1 OK 3143 3146 3147 3168 C3' G G 2 OK 3166 3169 3170 3191 C3' C G 3 OK 3189 3192 3193 3211 C3' U G 4 OK 3209 3212 3213 3231 C3' G G 5 OK 3229 3232 3233 3254 C3' G G 6 OK 3252 3255 3256 3277 C3' G G 7 OK 3275 3278 3279 3300 C3' U G 8 OK 3298 3301 3302 3320 C3' U G 9 OK 3318 3321 3322 3340 C3' U G 10 OK 3338 3341 3342 3360 C3' U G 11 OK 3358 3361 3362 3380 C3' U G 12 OK 3378 3381 3382 3400 C3' C G 13 OK 3398 3401 3402 3420 C3' C G 14 OK 3418 3421 3422 3440 C3' U G 15 OK 3438 3441 3442 3460 C3' U G 16 OK 3458 3461 3462 3480 C3' C G 17 OK 3478 3481 3482 3500 C3' G G 18 OK 3498 3501 3502 3523 C3' A G 19 OK 3521 3524 3525 3545 C3' A G 20 OK 3543 3546 3547 3567 C3' A G 21 OK 3565 3568 3569 3589 C3' G G 22 OK 3587 3590 3591 3612 C3' A G 23 OK 3610 3613 3614 3634 C3' A G 24 OK 3632 3635 3636 3656 C3' G G 25 OK 3654 3657 3658 3679 C3' G G 26 OK 3677 3680 3681 3702 C3' U G 27 OK 3700 3703 3704 3722 C3' U G 28 OK 3720 3723 3724 3742 C3' U G 29 OK 3740 3743 3744 3762 C3' U G 30 OK 3760 3763 3764 3782 C3' U G 31 OK 3780 3783 3784 3802 C3' A G 32 OK 3800 3803 3804 3824 C3' U G 33 OK 3822 3825 3826 3844 C3' C G 34 OK 3842 3845 3846 3864 C3' C G 35 OK 3862 3865 3866 3884 C3' C G 36 OK 3882 3885 3886 3904 C3' A G 37 OK 3902 3905 3906 3926 C3' G G 38 OK 3924 3927 3928 3949 C3' U G 39 OK 3947 3950 3951 3969 C3' C G 40 OK 3967 3970 3971 3987 C3' A H 1 OK 3985 3988 3989 4009 C3' A H 2 OK 4007 4010 4011 4031 C3' A H 3 OK 4029 4032 4033 4053 C3' A H 4 OK 4051 4054 4055 4075 C3' A H 5 OK 4073 4076 4077 4097 C3' A H 6 OK 4095 4098 4099 4119 C3' A H 7 OK 4117 4120 4121 4141 C3' A H 8 OK 4139 4142 4143 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 15 C4' GTP A 1 OK 17 14 16 38 C4' G A 2 OK 40 37 39 61 C4' C A 3 OK 63 60 62 81 C4' U A 4 OK 83 80 82 101 C4' G A 5 OK 103 100 102 124 C4' G A 6 OK 126 123 125 147 C4' G A 7 OK 149 146 148 170 C4' U A 8 OK 172 169 171 190 C4' U A 9 OK 192 189 191 210 C4' U A 10 OK 212 209 211 230 C4' U A 11 OK 232 229 231 250 C4' U A 12 OK 252 249 251 270 C4' C A 13 OK 272 269 271 290 C4' C A 14 OK 292 289 291 310 C4' U A 15 OK 312 309 311 330 C4' U A 16 OK 332 329 331 350 C4' C A 17 OK 352 349 351 370 C4' G A 18 OK 372 369 371 393 C4' A A 19 OK 395 392 394 415 C4' A A 20 OK 417 414 416 437 C4' A A 21 OK 439 436 438 459 C4' G A 22 OK 461 458 460 482 C4' A A 23 OK 484 481 483 504 C4' A A 24 OK 506 503 505 526 C4' G A 25 OK 528 525 527 549 C4' G A 26 OK 551 548 550 572 C4' U A 27 OK 574 571 573 592 C4' U A 28 OK 594 591 593 612 C4' U A 29 OK 614 611 613 632 C4' U A 30 OK 634 631 633 652 C4' U A 31 OK 654 651 653 672 C4' A A 32 OK 674 671 673 694 C4' U A 33 OK 696 693 695 714 C4' C A 34 OK 716 713 715 734 C4' C A 35 OK 736 733 735 754 C4' C A 36 OK 756 753 755 774 C4' A A 37 OK 776 773 775 796 C4' G A 38 OK 798 795 797 819 C4' U A 39 OK 821 818 820 839 C4' C A 40 OK 841 838 840 857 C4' A B 1 OK 859 856 858 879 C4' A B 2 OK 881 878 880 901 C4' A B 3 OK 903 900 902 923 C4' A B 4 OK 925 922 924 945 C4' A B 5 OK 947 944 946 967 C4' A B 6 OK 969 966 968 989 C4' A B 7 OK 991 988 990 1011 C4' A B 8 OK 1013 1010 1012 1033 C4' A B 9 OK 1035 1032 1034 1065 C4' GTP C 1 OK 1067 1064 1066 1088 C4' G C 2 OK 1090 1087 1089 1111 C4' C C 3 OK 1113 1110 1112 1131 C4' U C 4 OK 1133 1130 1132 1151 C4' G C 5 OK 1153 1150 1152 1174 C4' G C 6 OK 1176 1173 1175 1197 C4' G C 7 OK 1199 1196 1198 1220 C4' U C 8 OK 1222 1219 1221 1240 C4' U C 9 OK 1242 1239 1241 1260 C4' U C 10 OK 1262 1259 1261 1280 C4' U C 11 OK 1282 1279 1281 1300 C4' U C 12 OK 1302 1299 1301 1320 C4' C C 13 OK 1322 1319 1321 1340 C4' C C 14 OK 1342 1339 1341 1360 C4' U C 15 OK 1362 1359 1361 1380 C4' U C 16 OK 1382 1379 1381 1400 C4' C C 17 OK 1402 1399 1401 1420 C4' G C 18 OK 1422 1419 1421 1443 C4' A C 19 OK 1445 1442 1444 1465 C4' A C 20 OK 1467 1464 1466 1487 C4' A C 21 OK 1489 1486 1488 1509 C4' G C 22 OK 1511 1508 1510 1532 C4' A C 23 OK 1534 1531 1533 1554 C4' A C 24 OK 1556 1553 1555 1576 C4' G C 25 OK 1578 1575 1577 1599 C4' G C 26 OK 1601 1598 1600 1622 C4' U C 27 OK 1624 1621 1623 1642 C4' U C 28 OK 1644 1641 1643 1662 C4' U C 29 OK 1664 1661 1663 1682 C4' U C 30 OK 1684 1681 1683 1702 C4' U C 31 OK 1704 1701 1703 1722 C4' A C 32 OK 1724 1721 1723 1744 C4' U C 33 OK 1746 1743 1745 1764 C4' C C 34 OK 1766 1763 1765 1784 C4' C C 35 OK 1786 1783 1785 1804 C4' C C 36 OK 1806 1803 1805 1824 C4' A C 37 OK 1826 1823 1825 1846 C4' G C 38 OK 1848 1845 1847 1869 C4' U C 39 OK 1871 1868 1870 1889 C4' C C 40 OK 1891 1888 1890 1907 C4' A D 1 OK 1909 1906 1908 1929 C4' A D 2 OK 1931 1928 1930 1951 C4' A D 3 OK 1953 1950 1952 1973 C4' A D 4 OK 1975 1972 1974 1995 C4' A D 5 OK 1997 1994 1996 2017 C4' A D 6 OK 2019 2016 2018 2039 C4' A D 7 OK 2041 2038 2040 2061 C4' A D 8 OK 2063 2060 2062 2093 C4' GTP E 1 OK 2095 2092 2094 2116 C4' G E 2 OK 2118 2115 2117 2139 C4' C E 3 OK 2141 2138 2140 2159 C4' U E 4 OK 2161 2158 2160 2179 C4' G E 5 OK 2181 2178 2180 2202 C4' G E 6 OK 2204 2201 2203 2225 C4' G E 7 OK 2227 2224 2226 2248 C4' U E 8 OK 2250 2247 2249 2268 C4' U E 9 OK 2270 2267 2269 2288 C4' U E 10 OK 2290 2287 2289 2308 C4' U E 11 OK 2310 2307 2309 2328 C4' U E 12 OK 2330 2327 2329 2348 C4' C E 13 OK 2350 2347 2349 2368 C4' C E 14 OK 2370 2367 2369 2388 C4' U E 15 OK 2390 2387 2389 2408 C4' U E 16 OK 2410 2407 2409 2428 C4' C E 17 OK 2430 2427 2429 2448 C4' G E 18 OK 2450 2447 2449 2471 C4' A E 19 OK 2473 2470 2472 2493 C4' A E 20 OK 2495 2492 2494 2515 C4' A E 21 OK 2517 2514 2516 2537 C4' G E 22 OK 2539 2536 2538 2560 C4' A E 23 OK 2562 2559 2561 2582 C4' A E 24 OK 2584 2581 2583 2604 C4' G E 25 OK 2606 2603 2605 2627 C4' G E 26 OK 2629 2626 2628 2650 C4' U E 27 OK 2652 2649 2651 2670 C4' U E 28 OK 2672 2669 2671 2690 C4' U E 29 OK 2692 2689 2691 2710 C4' U E 30 OK 2712 2709 2711 2730 C4' U E 31 OK 2732 2729 2731 2750 C4' A E 32 OK 2752 2749 2751 2772 C4' U E 33 OK 2774 2771 2773 2792 C4' C E 34 OK 2794 2791 2793 2812 C4' C E 35 OK 2814 2811 2813 2832 C4' C E 36 OK 2834 2831 2833 2852 C4' A E 37 OK 2854 2851 2853 2874 C4' G E 38 OK 2876 2873 2875 2897 C4' U E 39 OK 2899 2896 2898 2917 C4' C E 40 OK 2919 2916 2918 2935 C4' A F 1 OK 2937 2934 2936 2957 C4' A F 2 OK 2959 2956 2958 2979 C4' A F 3 OK 2981 2978 2980 3001 C4' A F 4 OK 3003 3000 3002 3023 C4' A F 5 OK 3025 3022 3024 3045 C4' A F 6 OK 3047 3044 3046 3067 C4' A F 7 OK 3069 3066 3068 3089 C4' A F 8 OK 3091 3088 3090 3111 C4' A F 9 OK 3113 3110 3112 3143 C4' GTP G 1 OK 3145 3142 3144 3166 C4' G G 2 OK 3168 3165 3167 3189 C4' C G 3 OK 3191 3188 3190 3209 C4' U G 4 OK 3211 3208 3210 3229 C4' G G 5 OK 3231 3228 3230 3252 C4' G G 6 OK 3254 3251 3253 3275 C4' G G 7 OK 3277 3274 3276 3298 C4' U G 8 OK 3300 3297 3299 3318 C4' U G 9 OK 3320 3317 3319 3338 C4' U G 10 OK 3340 3337 3339 3358 C4' U G 11 OK 3360 3357 3359 3378 C4' U G 12 OK 3380 3377 3379 3398 C4' C G 13 OK 3400 3397 3399 3418 C4' C G 14 OK 3420 3417 3419 3438 C4' U G 15 OK 3440 3437 3439 3458 C4' U G 16 OK 3460 3457 3459 3478 C4' C G 17 OK 3480 3477 3479 3498 C4' G G 18 OK 3500 3497 3499 3521 C4' A G 19 OK 3523 3520 3522 3543 C4' A G 20 OK 3545 3542 3544 3565 C4' A G 21 OK 3567 3564 3566 3587 C4' G G 22 OK 3589 3586 3588 3610 C4' A G 23 OK 3612 3609 3611 3632 C4' A G 24 OK 3634 3631 3633 3654 C4' G G 25 OK 3656 3653 3655 3677 C4' G G 26 OK 3679 3676 3678 3700 C4' U G 27 OK 3702 3699 3701 3720 C4' U G 28 OK 3722 3719 3721 3740 C4' U G 29 OK 3742 3739 3741 3760 C4' U G 30 OK 3762 3759 3761 3780 C4' U G 31 OK 3782 3779 3781 3800 C4' A G 32 OK 3802 3799 3801 3822 C4' U G 33 OK 3824 3821 3823 3842 C4' C G 34 OK 3844 3841 3843 3862 C4' C G 35 OK 3864 3861 3863 3882 C4' C G 36 OK 3884 3881 3883 3902 C4' A G 37 OK 3904 3901 3903 3924 C4' G G 38 OK 3926 3923 3925 3947 C4' U G 39 OK 3949 3946 3948 3967 C4' C G 40 OK 3969 3966 3968 3985 C4' A H 1 OK 3987 3984 3986 4007 C4' A H 2 OK 4009 4006 4008 4029 C4' A H 3 OK 4031 4028 4030 4051 C4' A H 4 OK 4053 4050 4052 4073 C4' A H 5 OK 4075 4072 4074 4095 C4' A H 6 OK 4097 4094 4096 4117 C4' A H 7 OK 4119 4116 4118 4139 C4' A H 8 OK 4141 4138 4140 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 14 C5' GTP A 1 13 15 37 C5' G A 2 36 38 60 C5' C A 3 59 61 80 C5' U A 4 79 81 100 C5' G A 5 99 101 123 C5' G A 6 122 124 146 C5' G A 7 145 147 169 C5' U A 8 168 170 189 C5' U A 9 188 190 209 C5' U A 10 208 210 229 C5' U A 11 228 230 249 C5' U A 12 248 250 269 C5' C A 13 268 270 289 C5' C A 14 288 290 309 C5' U A 15 308 310 329 C5' U A 16 328 330 349 C5' C A 17 348 350 369 C5' G A 18 368 370 392 C5' A A 19 391 393 414 C5' A A 20 413 415 436 C5' A A 21 435 437 458 C5' G A 22 457 459 481 C5' A A 23 480 482 503 C5' A A 24 502 504 525 C5' G A 25 524 526 548 C5' G A 26 547 549 571 C5' U A 27 570 572 591 C5' U A 28 590 592 611 C5' U A 29 610 612 631 C5' U A 30 630 632 651 C5' U A 31 650 652 671 C5' A A 32 670 672 693 C5' U A 33 692 694 713 C5' C A 34 712 714 733 C5' C A 35 732 734 753 C5' C A 36 752 754 773 C5' A A 37 772 774 795 C5' G A 38 794 796 818 C5' U A 39 817 819 838 C5' C A 40 837 839 856 C5' A B 1 855 857 878 C5' A B 2 877 879 900 C5' A B 3 899 901 922 C5' A B 4 921 923 944 C5' A B 5 943 945 966 C5' A B 6 965 967 988 C5' A B 7 987 989 1010 C5' A B 8 1009 1011 1032 C5' A B 9 1031 1033 1064 C5' GTP C 1 1063 1065 1087 C5' G C 2 1086 1088 1110 C5' C C 3 1109 1111 1130 C5' U C 4 1129 1131 1150 C5' G C 5 1149 1151 1173 C5' G C 6 1172 1174 1196 C5' G C 7 1195 1197 1219 C5' U C 8 1218 1220 1239 C5' U C 9 1238 1240 1259 C5' U C 10 1258 1260 1279 C5' U C 11 1278 1280 1299 C5' U C 12 1298 1300 1319 C5' C C 13 1318 1320 1339 C5' C C 14 1338 1340 1359 C5' U C 15 1358 1360 1379 C5' U C 16 1378 1380 1399 C5' C C 17 1398 1400 1419 C5' G C 18 1418 1420 1442 C5' A C 19 1441 1443 1464 C5' A C 20 1463 1465 1486 C5' A C 21 1485 1487 1508 C5' G C 22 1507 1509 1531 C5' A C 23 1530 1532 1553 C5' A C 24 1552 1554 1575 C5' G C 25 1574 1576 1598 C5' G C 26 1597 1599 1621 C5' U C 27 1620 1622 1641 C5' U C 28 1640 1642 1661 C5' U C 29 1660 1662 1681 C5' U C 30 1680 1682 1701 C5' U C 31 1700 1702 1721 C5' A C 32 1720 1722 1743 C5' U C 33 1742 1744 1763 C5' C C 34 1762 1764 1783 C5' C C 35 1782 1784 1803 C5' C C 36 1802 1804 1823 C5' A C 37 1822 1824 1845 C5' G C 38 1844 1846 1868 C5' U C 39 1867 1869 1888 C5' C C 40 1887 1889 1906 C5' A D 1 1905 1907 1928 C5' A D 2 1927 1929 1950 C5' A D 3 1949 1951 1972 C5' A D 4 1971 1973 1994 C5' A D 5 1993 1995 2016 C5' A D 6 2015 2017 2038 C5' A D 7 2037 2039 2060 C5' A D 8 2059 2061 2092 C5' GTP E 1 2091 2093 2115 C5' G E 2 2114 2116 2138 C5' C E 3 2137 2139 2158 C5' U E 4 2157 2159 2178 C5' G E 5 2177 2179 2201 C5' G E 6 2200 2202 2224 C5' G E 7 2223 2225 2247 C5' U E 8 2246 2248 2267 C5' U E 9 2266 2268 2287 C5' U E 10 2286 2288 2307 C5' U E 11 2306 2308 2327 C5' U E 12 2326 2328 2347 C5' C E 13 2346 2348 2367 C5' C E 14 2366 2368 2387 C5' U E 15 2386 2388 2407 C5' U E 16 2406 2408 2427 C5' C E 17 2426 2428 2447 C5' G E 18 2446 2448 2470 C5' A E 19 2469 2471 2492 C5' A E 20 2491 2493 2514 C5' A E 21 2513 2515 2536 C5' G E 22 2535 2537 2559 C5' A E 23 2558 2560 2581 C5' A E 24 2580 2582 2603 C5' G E 25 2602 2604 2626 C5' G E 26 2625 2627 2649 C5' U E 27 2648 2650 2669 C5' U E 28 2668 2670 2689 C5' U E 29 2688 2690 2709 C5' U E 30 2708 2710 2729 C5' U E 31 2728 2730 2749 C5' A E 32 2748 2750 2771 C5' U E 33 2770 2772 2791 C5' C E 34 2790 2792 2811 C5' C E 35 2810 2812 2831 C5' C E 36 2830 2832 2851 C5' A E 37 2850 2852 2873 C5' G E 38 2872 2874 2896 C5' U E 39 2895 2897 2916 C5' C E 40 2915 2917 2934 C5' A F 1 2933 2935 2956 C5' A F 2 2955 2957 2978 C5' A F 3 2977 2979 3000 C5' A F 4 2999 3001 3022 C5' A F 5 3021 3023 3044 C5' A F 6 3043 3045 3066 C5' A F 7 3065 3067 3088 C5' A F 8 3087 3089 3110 C5' A F 9 3109 3111 3142 C5' GTP G 1 3141 3143 3165 C5' G G 2 3164 3166 3188 C5' C G 3 3187 3189 3208 C5' U G 4 3207 3209 3228 C5' G G 5 3227 3229 3251 C5' G G 6 3250 3252 3274 C5' G G 7 3273 3275 3297 C5' U G 8 3296 3298 3317 C5' U G 9 3316 3318 3337 C5' U G 10 3336 3338 3357 C5' U G 11 3356 3358 3377 C5' U G 12 3376 3378 3397 C5' C G 13 3396 3398 3417 C5' C G 14 3416 3418 3437 C5' U G 15 3436 3438 3457 C5' U G 16 3456 3458 3477 C5' C G 17 3476 3478 3497 C5' G G 18 3496 3498 3520 C5' A G 19 3519 3521 3542 C5' A G 20 3541 3543 3564 C5' A G 21 3563 3565 3586 C5' G G 22 3585 3587 3609 C5' A G 23 3608 3610 3631 C5' A G 24 3630 3632 3653 C5' G G 25 3652 3654 3676 C5' G G 26 3675 3677 3699 C5' U G 27 3698 3700 3719 C5' U G 28 3718 3720 3739 C5' U G 29 3738 3740 3759 C5' U G 30 3758 3760 3779 C5' U G 31 3778 3780 3799 C5' A G 32 3798 3800 3821 C5' U G 33 3820 3822 3841 C5' C G 34 3840 3842 3861 C5' C G 35 3860 3862 3881 C5' C G 36 3880 3882 3901 C5' A G 37 3900 3902 3923 C5' G G 38 3922 3924 3946 C5' U G 39 3945 3947 3966 C5' C G 40 3965 3967 3984 C5' A H 1 3983 3985 4006 C5' A H 2 4005 4007 4028 C5' A H 3 4027 4029 4050 C5' A H 4 4049 4051 4072 C5' A H 5 4071 4073 4094 C5' A H 6 4093 4095 4116 C5' A H 7 4115 4117 4138 C5' A H 8 4137 4139 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 33 P G A 2 distorted distorted 18 34 35 36 56 P C A 3 distorted distorted 41 57 58 59 76 P U A 4 distorted distorted 64 77 78 79 96 P G A 5 distorted distorted 84 97 98 99 119 P G A 6 distorted distorted 104 120 121 122 142 P G A 7 distorted distorted 127 143 144 145 165 P U A 8 distorted distorted 150 166 167 168 185 P U A 9 distorted distorted 173 186 187 188 205 P U A 10 distorted distorted 193 206 207 208 225 P U A 11 distorted distorted 213 226 227 228 245 P U A 12 distorted distorted 233 246 247 248 265 P C A 13 distorted distorted 253 266 267 268 285 P C A 14 distorted distorted 273 286 287 288 305 P U A 15 distorted distorted 293 306 307 308 325 P U A 16 distorted distorted 313 326 327 328 345 P C A 17 distorted distorted 333 346 347 348 365 P G A 18 distorted distorted 353 366 367 368 388 P A A 19 distorted distorted 373 389 390 391 410 P A A 20 distorted distorted 396 411 412 413 432 P A A 21 distorted distorted 418 433 434 435 454 P G A 22 distorted distorted 440 455 456 457 477 P A A 23 distorted distorted 462 478 479 480 499 P A A 24 distorted distorted 485 500 501 502 521 P G A 25 distorted distorted 507 522 523 524 544 P G A 26 distorted distorted 529 545 546 547 567 P U A 27 distorted distorted 552 568 569 570 587 P U A 28 distorted distorted 575 588 589 590 607 P U A 29 distorted distorted 595 608 609 610 627 P U A 30 distorted distorted 615 628 629 630 647 P U A 31 distorted distorted 635 648 649 650 667 P A A 32 distorted distorted 655 668 669 670 689 P U A 33 distorted distorted 675 690 691 692 709 P C A 34 distorted distorted 697 710 711 712 729 P C A 35 distorted distorted 717 730 731 732 749 P C A 36 distorted distorted 737 750 751 752 769 P A A 37 distorted distorted 757 770 771 772 791 P G A 38 distorted distorted 777 792 793 794 814 P U A 39 distorted distorted 799 815 816 817 834 P C A 40 distorted distorted 822 835 836 837 874 P A B 2 distorted distorted 860 875 876 877 896 P A B 3 distorted distorted 882 897 898 899 918 P A B 4 distorted distorted 904 919 920 921 940 P A B 5 distorted distorted 926 941 942 943 962 P A B 6 distorted distorted 948 963 964 965 984 P A B 7 distorted distorted 970 985 986 987 1006 P A B 8 distorted distorted 992 1007 1008 1009 1028 P A B 9 distorted distorted 1014 1029 1030 1031 1083 P G C 2 distorted distorted 1068 1084 1085 1086 1106 P C C 3 distorted distorted 1091 1107 1108 1109 1126 P U C 4 distorted distorted 1114 1127 1128 1129 1146 P G C 5 distorted distorted 1134 1147 1148 1149 1169 P G C 6 distorted distorted 1154 1170 1171 1172 1192 P G C 7 distorted distorted 1177 1193 1194 1195 1215 P U C 8 distorted distorted 1200 1216 1217 1218 1235 P U C 9 distorted distorted 1223 1236 1237 1238 1255 P U C 10 distorted distorted 1243 1256 1257 1258 1275 P U C 11 distorted distorted 1263 1276 1277 1278 1295 P U C 12 distorted distorted 1283 1296 1297 1298 1315 P C C 13 distorted distorted 1303 1316 1317 1318 1335 P C C 14 distorted distorted 1323 1336 1337 1338 1355 P U C 15 distorted distorted 1343 1356 1357 1358 1375 P U C 16 distorted distorted 1363 1376 1377 1378 1395 P C C 17 distorted distorted 1383 1396 1397 1398 1415 P G C 18 distorted distorted 1403 1416 1417 1418 1438 P A C 19 distorted distorted 1423 1439 1440 1441 1460 P A C 20 distorted distorted 1446 1461 1462 1463 1482 P A C 21 distorted distorted 1468 1483 1484 1485 1504 P G C 22 distorted distorted 1490 1505 1506 1507 1527 P A C 23 distorted distorted 1512 1528 1529 1530 1549 P A C 24 distorted distorted 1535 1550 1551 1552 1571 P G C 25 distorted distorted 1557 1572 1573 1574 1594 P G C 26 distorted distorted 1579 1595 1596 1597 1617 P U C 27 distorted distorted 1602 1618 1619 1620 1637 P U C 28 distorted distorted 1625 1638 1639 1640 1657 P U C 29 distorted distorted 1645 1658 1659 1660 1677 P U C 30 distorted distorted 1665 1678 1679 1680 1697 P U C 31 distorted distorted 1685 1698 1699 1700 1717 P A C 32 distorted distorted 1705 1718 1719 1720 1739 P U C 33 distorted distorted 1725 1740 1741 1742 1759 P C C 34 distorted distorted 1747 1760 1761 1762 1779 P C C 35 distorted distorted 1767 1780 1781 1782 1799 P C C 36 distorted distorted 1787 1800 1801 1802 1819 P A C 37 distorted distorted 1807 1820 1821 1822 1841 P G C 38 distorted distorted 1827 1842 1843 1844 1864 P U C 39 distorted distorted 1849 1865 1866 1867 1884 P C C 40 distorted distorted 1872 1885 1886 1887 1924 P A D 2 distorted distorted 1910 1925 1926 1927 1946 P A D 3 distorted distorted 1932 1947 1948 1949 1968 P A D 4 distorted distorted 1954 1969 1970 1971 1990 P A D 5 distorted distorted 1976 1991 1992 1993 2012 P A D 6 distorted distorted 1998 2013 2014 2015 2034 P A D 7 distorted distorted 2020 2035 2036 2037 2056 P A D 8 distorted distorted 2042 2057 2058 2059 2111 P G E 2 distorted distorted 2096 2112 2113 2114 2134 P C E 3 distorted distorted 2119 2135 2136 2137 2154 P U E 4 distorted distorted 2142 2155 2156 2157 2174 P G E 5 distorted distorted 2162 2175 2176 2177 2197 P G E 6 distorted distorted 2182 2198 2199 2200 2220 P G E 7 distorted distorted 2205 2221 2222 2223 2243 P U E 8 distorted distorted 2228 2244 2245 2246 2263 P U E 9 distorted distorted 2251 2264 2265 2266 2283 P U E 10 distorted distorted 2271 2284 2285 2286 2303 P U E 11 distorted distorted 2291 2304 2305 2306 2323 P U E 12 distorted distorted 2311 2324 2325 2326 2343 P C E 13 distorted distorted 2331 2344 2345 2346 2363 P C E 14 distorted distorted 2351 2364 2365 2366 2383 P U E 15 distorted distorted 2371 2384 2385 2386 2403 P U E 16 distorted distorted 2391 2404 2405 2406 2423 P C E 17 distorted distorted 2411 2424 2425 2426 2443 P G E 18 distorted distorted 2431 2444 2445 2446 2466 P A E 19 distorted distorted 2451 2467 2468 2469 2488 P A E 20 distorted distorted 2474 2489 2490 2491 2510 P A E 21 distorted distorted 2496 2511 2512 2513 2532 P G E 22 distorted distorted 2518 2533 2534 2535 2555 P A E 23 distorted distorted 2540 2556 2557 2558 2577 P A E 24 distorted distorted 2563 2578 2579 2580 2599 P G E 25 distorted distorted 2585 2600 2601 2602 2622 P G E 26 distorted distorted 2607 2623 2624 2625 2645 P U E 27 distorted distorted 2630 2646 2647 2648 2665 P U E 28 distorted distorted 2653 2666 2667 2668 2685 P U E 29 distorted distorted 2673 2686 2687 2688 2705 P U E 30 distorted distorted 2693 2706 2707 2708 2725 P U E 31 distorted distorted 2713 2726 2727 2728 2745 P A E 32 distorted distorted 2733 2746 2747 2748 2767 P U E 33 distorted distorted 2753 2768 2769 2770 2787 P C E 34 distorted distorted 2775 2788 2789 2790 2807 P C E 35 distorted distorted 2795 2808 2809 2810 2827 P C E 36 distorted distorted 2815 2828 2829 2830 2847 P A E 37 distorted distorted 2835 2848 2849 2850 2869 P G E 38 distorted distorted 2855 2870 2871 2872 2892 P U E 39 distorted distorted 2877 2893 2894 2895 2912 P C E 40 distorted distorted 2900 2913 2914 2915 2952 P A F 2 distorted distorted 2938 2953 2954 2955 2974 P A F 3 distorted distorted 2960 2975 2976 2977 2996 P A F 4 distorted distorted 2982 2997 2998 2999 3018 P A F 5 distorted distorted 3004 3019 3020 3021 3040 P A F 6 distorted distorted 3026 3041 3042 3043 3062 P A F 7 distorted distorted 3048 3063 3064 3065 3084 P A F 8 distorted distorted 3070 3085 3086 3087 3106 P A F 9 distorted distorted 3092 3107 3108 3109 3161 P G G 2 distorted distorted 3146 3162 3163 3164 3184 P C G 3 distorted distorted 3169 3185 3186 3187 3204 P U G 4 distorted distorted 3192 3205 3206 3207 3224 P G G 5 distorted distorted 3212 3225 3226 3227 3247 P G G 6 distorted distorted 3232 3248 3249 3250 3270 P G G 7 distorted distorted 3255 3271 3272 3273 3293 P U G 8 distorted distorted 3278 3294 3295 3296 3313 P U G 9 distorted distorted 3301 3314 3315 3316 3333 P U G 10 distorted distorted 3321 3334 3335 3336 3353 P U G 11 distorted distorted 3341 3354 3355 3356 3373 P U G 12 distorted distorted 3361 3374 3375 3376 3393 P C G 13 distorted distorted 3381 3394 3395 3396 3413 P C G 14 distorted distorted 3401 3414 3415 3416 3433 P U G 15 distorted distorted 3421 3434 3435 3436 3453 P U G 16 distorted distorted 3441 3454 3455 3456 3473 P C G 17 distorted distorted 3461 3474 3475 3476 3493 P G G 18 distorted distorted 3481 3494 3495 3496 3516 P A G 19 distorted distorted 3501 3517 3518 3519 3538 P A G 20 distorted distorted 3524 3539 3540 3541 3560 P A G 21 distorted distorted 3546 3561 3562 3563 3582 P G G 22 distorted distorted 3568 3583 3584 3585 3605 P A G 23 distorted distorted 3590 3606 3607 3608 3627 P A G 24 distorted distorted 3613 3628 3629 3630 3649 P G G 25 distorted distorted 3635 3650 3651 3652 3672 P G G 26 distorted distorted 3657 3673 3674 3675 3695 P U G 27 distorted distorted 3680 3696 3697 3698 3715 P U G 28 distorted distorted 3703 3716 3717 3718 3735 P U G 29 distorted distorted 3723 3736 3737 3738 3755 P U G 30 distorted distorted 3743 3756 3757 3758 3775 P U G 31 distorted distorted 3763 3776 3777 3778 3795 P A G 32 distorted distorted 3783 3796 3797 3798 3817 P U G 33 distorted distorted 3803 3818 3819 3820 3837 P C G 34 distorted distorted 3825 3838 3839 3840 3857 P C G 35 distorted distorted 3845 3858 3859 3860 3877 P C G 36 distorted distorted 3865 3878 3879 3880 3897 P A G 37 distorted distorted 3885 3898 3899 3900 3919 P G G 38 distorted distorted 3905 3920 3921 3922 3942 P U G 39 distorted distorted 3927 3943 3944 3945 3962 P C G 40 distorted distorted 3950 3963 3964 3965 4002 P A H 2 distorted distorted 3988 4003 4004 4005 4024 P A H 3 distorted distorted 4010 4025 4026 4027 4046 P A H 4 distorted distorted 4032 4047 4048 4049 4068 P A H 5 distorted distorted 4054 4069 4070 4071 4090 P A H 6 distorted distorted 4076 4091 4092 4093 4112 P A H 7 distorted distorted 4098 4113 4114 4115 4134 P A H 8 distorted distorted 4120 4135 4136 4137 ---------------------------------------------------------------------------------