ID code: '3NDB' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 4011 C1' G M 123 beta 4006 4012 4009 4034 C1' U M 124 beta 4029 4035 4032 4054 C1' C M 125 beta 4049 4055 4052 4074 C1' U M 126 beta 4069 4075 4072 4094 C1' C M 127 beta 4089 4095 4092 4114 C1' G M 128 beta 4109 4115 4112 4137 C1' U M 129 beta 4132 4138 4135 4157 C1' C M 130 beta 4152 4158 4155 4177 C1' C M 131 beta 4172 4178 4175 4197 C1' C M 132 beta 4192 4198 4195 4217 C1' G M 133 beta 4212 4218 4215 4240 C1' U M 134 beta 4235 4241 4238 4260 C1' G M 135 beta 4255 4261 4258 4283 C1' G M 136 beta 4278 4284 4281 4306 C1' G M 137 beta 4301 4307 4304 4329 C1' G M 138 beta 4324 4330 4327 4352 C1' C M 139 beta 4347 4353 4350 4372 C1' U M 140 beta 4367 4373 4370 4392 C1' C M 141 beta 4387 4393 4390 4412 C1' G M 142 beta 4407 4413 4410 4435 C1' G M 143 beta 4430 4436 4433 4458 C1' C M 144 beta 4453 4459 4456 4478 C1' G M 145 beta 4473 4479 4476 4501 C1' G M 146 beta 4496 4502 4499 4524 C1' U M 147 beta 4519 4525 4522 4544 C1' G M 148 beta 4539 4545 4542 4567 C1' G M 149 beta 4562 4568 4565 4590 C1' G M 150 beta 4585 4591 4588 4613 C1' G M 151 beta 4608 4614 4611 4636 C1' G M 152 beta 4631 4637 4634 4659 C1' A M 153 beta 4654 4660 4657 4681 C1' G M 154 beta 4676 4682 4679 4704 C1' C M 155 beta 4699 4705 4702 4724 C1' A M 156 beta 4719 4725 4722 4746 C1' U M 157 beta 4741 4747 4744 4766 C1' C M 158 beta 4761 4767 4764 4786 C1' U M 159 beta 4781 4787 4784 4806 C1' C M 160 beta 4801 4807 4804 4826 C1' C M 161 beta 4821 4827 4824 4846 C1' U M 162 beta 4841 4847 4844 4866 C1' G M 163 beta 4861 4867 4864 4889 C1' U M 164 beta 4884 4890 4887 4909 C1' A M 165 beta 4904 4910 4907 4931 C1' G M 166 beta 4926 4932 4929 4954 C1' G M 167 beta 4949 4955 4952 4977 C1' G M 168 beta 4972 4978 4975 5000 C1' G M 169 beta 4995 5001 4998 5023 C1' A M 170 beta 5018 5024 5021 5045 C1' G M 171 beta 5040 5046 5043 5068 C1' A M 172 beta 5063 5069 5066 5090 C1' U M 173 beta 5085 5091 5088 5110 C1' G M 174 beta 5105 5111 5108 5133 C1' U M 175 beta 5128 5134 5131 5153 C1' A M 176 beta 5148 5154 5151 5175 C1' A M 177 beta 5170 5176 5173 5197 C1' C M 178 beta 5192 5198 5195 5217 C1' C M 179 beta 5212 5218 5215 5237 C1' C M 180 beta 5232 5238 5235 5257 C1' C M 181 beta 5252 5258 5255 5277 C1' C M 182 beta 5272 5278 5275 5297 C1' U M 183 beta 5292 5298 5295 5317 C1' U M 184 beta 5312 5318 5315 5337 C1' U M 185 beta 5332 5338 5335 5357 C1' A M 186 beta 5352 5358 5355 5379 C1' C M 187 beta 5374 5380 5377 5399 C1' C M 188 beta 5394 5400 5397 5419 C1' U M 189 beta 5414 5420 5417 5439 C1' G M 190 beta 5434 5440 5437 5462 C1' C M 191 beta 5457 5463 5460 5482 C1' C M 192 beta 5477 5483 5480 5502 C1' G M 193 beta 5497 5503 5500 5525 C1' A M 194 beta 5520 5526 5523 5547 C1' A M 195 beta 5542 5548 5545 5569 C1' C M 196 beta 5564 5570 5567 5589 C1' C M 197 beta 5584 5590 5587 5609 C1' C M 198 beta 5604 5610 5607 5629 C1' C M 199 beta 5624 5630 5627 5649 C1' G M 200 beta 5644 5650 5647 5672 C1' C M 201 beta 5667 5673 5670 5692 C1' C M 202 beta 5687 5693 5690 5712 C1' A M 203 beta 5707 5713 5710 5734 C1' G M 204 beta 5729 5735 5732 5757 C1' G M 205 beta 5752 5758 5755 5780 C1' C M 206 beta 5775 5781 5778 5800 C1' C M 207 beta 5795 5801 5798 5820 C1' C M 208 beta 5815 5821 5818 5840 C1' G M 209 beta 5835 5841 5838 5863 C1' G M 210 beta 5858 5864 5861 5886 C1' A M 211 beta 5881 5887 5884 5908 C1' A M 212 beta 5903 5909 5906 5930 C1' G M 213 beta 5925 5931 5928 5953 C1' G M 214 beta 5948 5954 5951 5976 C1' G M 215 beta 5971 5977 5974 5999 C1' A M 216 beta 5994 6000 5997 6021 C1' G M 217 beta 6016 6022 6019 6044 C1' C M 218 beta 6039 6045 6042 6064 C1' A M 219 beta 6059 6065 6062 6086 C1' A M 220 beta 6081 6087 6084 6108 C1' C M 221 beta 6103 6109 6106 6128 C1' G M 222 beta 6123 6129 6126 6151 C1' G M 223 beta 6146 6152 6149 6174 C1' U M 224 beta 6169 6175 6172 6194 C1' A M 225 beta 6189 6195 6192 6216 C1' G M 226 beta 6211 6217 6214 6239 C1' G M 227 beta 6234 6240 6237 6262 C1' C M 228 beta 6257 6263 6260 6282 C1' A M 229 beta 6277 6283 6280 6304 C1' G M 230 beta 6299 6305 6302 6327 C1' G M 231 beta 6322 6328 6325 6350 C1' A M 232 beta 6345 6351 6348 6372 C1' C M 233 beta 6367 6373 6370 6392 C1' G M 234 beta 6387 6393 6390 6415 C1' U M 235 beta 6410 6416 6413 6435 C1' C M 236 beta 6430 6436 6433 6455 C1' G M 237 beta 6450 6456 6453 6478 C1' G M 238 beta 6473 6479 6476 6501 C1' C M 239 beta 6496 6502 6499 6521 C1' G M 240 beta 6516 6522 6519 6544 C1' C M 241 beta 6539 6545 6542 6564 C1' U M 242 beta 6559 6565 6562 6584 C1' C M 243 beta 6579 6585 6582 6604 C1' A M 244 beta 6599 6605 6602 6626 C1' C M 245 beta 6621 6627 6624 6646 C1' G M 246 beta 6641 6647 6644 6669 C1' G M 247 beta 6664 6670 6667 6692 C1' G M 248 beta 6687 6693 6690 6715 C1' G M 249 beta 6710 6716 6713 6738 C1' G M 250 beta 6733 6739 6736 6761 C1' U M 251 beta 6756 6762 6759 6781 C1' G M 252 beta 6776 6782 6779 6804 C1' C M 253 beta 6799 6805 6802 6824 C1' G M 254 beta 6819 6825 6822 6847 C1' G M 255 beta 6842 6848 6845 6870 C1' G M 256 beta 6865 6871 6868 6893 C1' A M 257 beta 6888 6894 6891 6915 C1' C M 258 beta 6910 6916 6913 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 4009 C2' G M 123 OK 4011 4007 4010 4032 C2' U M 124 OK 4034 4030 4033 4052 C2' C M 125 OK 4054 4050 4053 4072 C2' U M 126 OK 4074 4070 4073 4092 C2' C M 127 OK 4094 4090 4093 4112 C2' G M 128 OK 4114 4110 4113 4135 C2' U M 129 OK 4137 4133 4136 4155 C2' C M 130 OK 4157 4153 4156 4175 C2' C M 131 OK 4177 4173 4176 4195 C2' C M 132 OK 4197 4193 4196 4215 C2' G M 133 OK 4217 4213 4216 4238 C2' U M 134 OK 4240 4236 4239 4258 C2' G M 135 OK 4260 4256 4259 4281 C2' G M 136 OK 4283 4279 4282 4304 C2' G M 137 OK 4306 4302 4305 4327 C2' G M 138 OK 4329 4325 4328 4350 C2' C M 139 OK 4352 4348 4351 4370 C2' U M 140 OK 4372 4368 4371 4390 C2' C M 141 OK 4392 4388 4391 4410 C2' G M 142 OK 4412 4408 4411 4433 C2' G M 143 OK 4435 4431 4434 4456 C2' C M 144 OK 4458 4454 4457 4476 C2' G M 145 OK 4478 4474 4477 4499 C2' G M 146 OK 4501 4497 4500 4522 C2' U M 147 OK 4524 4520 4523 4542 C2' G M 148 OK 4544 4540 4543 4565 C2' G M 149 OK 4567 4563 4566 4588 C2' G M 150 OK 4590 4586 4589 4611 C2' G M 151 OK 4613 4609 4612 4634 C2' G M 152 OK 4636 4632 4635 4657 C2' A M 153 OK 4659 4655 4658 4679 C2' G M 154 OK 4681 4677 4680 4702 C2' C M 155 OK 4704 4700 4703 4722 C2' A M 156 OK 4724 4720 4723 4744 C2' U M 157 OK 4746 4742 4745 4764 C2' C M 158 OK 4766 4762 4765 4784 C2' U M 159 OK 4786 4782 4785 4804 C2' C M 160 OK 4806 4802 4805 4824 C2' C M 161 OK 4826 4822 4825 4844 C2' U M 162 OK 4846 4842 4845 4864 C2' G M 163 OK 4866 4862 4865 4887 C2' U M 164 OK 4889 4885 4888 4907 C2' A M 165 OK 4909 4905 4908 4929 C2' G M 166 OK 4931 4927 4930 4952 C2' G M 167 OK 4954 4950 4953 4975 C2' G M 168 OK 4977 4973 4976 4998 C2' G M 169 OK 5000 4996 4999 5021 C2' A M 170 OK 5023 5019 5022 5043 C2' G M 171 OK 5045 5041 5044 5066 C2' A M 172 OK 5068 5064 5067 5088 C2' U M 173 OK 5090 5086 5089 5108 C2' G M 174 OK 5110 5106 5109 5131 C2' U M 175 OK 5133 5129 5132 5151 C2' A M 176 OK 5153 5149 5152 5173 C2' A M 177 OK 5175 5171 5174 5195 C2' C M 178 OK 5197 5193 5196 5215 C2' C M 179 OK 5217 5213 5216 5235 C2' C M 180 OK 5237 5233 5236 5255 C2' C M 181 OK 5257 5253 5256 5275 C2' C M 182 OK 5277 5273 5276 5295 C2' U M 183 OK 5297 5293 5296 5315 C2' U M 184 OK 5317 5313 5316 5335 C2' U M 185 OK 5337 5333 5336 5355 C2' A M 186 OK 5357 5353 5356 5377 C2' C M 187 OK 5379 5375 5378 5397 C2' C M 188 OK 5399 5395 5398 5417 C2' U M 189 OK 5419 5415 5418 5437 C2' G M 190 OK 5439 5435 5438 5460 C2' C M 191 OK 5462 5458 5461 5480 C2' C M 192 OK 5482 5478 5481 5500 C2' G M 193 OK 5502 5498 5501 5523 C2' A M 194 OK 5525 5521 5524 5545 C2' A M 195 OK 5547 5543 5546 5567 C2' C M 196 OK 5569 5565 5568 5587 C2' C M 197 OK 5589 5585 5588 5607 C2' C M 198 OK 5609 5605 5608 5627 C2' C M 199 OK 5629 5625 5628 5647 C2' G M 200 OK 5649 5645 5648 5670 C2' C M 201 OK 5672 5668 5671 5690 C2' C M 202 OK 5692 5688 5691 5710 C2' A M 203 OK 5712 5708 5711 5732 C2' G M 204 OK 5734 5730 5733 5755 C2' G M 205 OK 5757 5753 5756 5778 C2' C M 206 OK 5780 5776 5779 5798 C2' C M 207 OK 5800 5796 5799 5818 C2' C M 208 OK 5820 5816 5819 5838 C2' G M 209 OK 5840 5836 5839 5861 C2' G M 210 OK 5863 5859 5862 5884 C2' A M 211 OK 5886 5882 5885 5906 C2' A M 212 OK 5908 5904 5907 5928 C2' G M 213 OK 5930 5926 5929 5951 C2' G M 214 OK 5953 5949 5952 5974 C2' G M 215 OK 5976 5972 5975 5997 C2' A M 216 OK 5999 5995 5998 6019 C2' G M 217 OK 6021 6017 6020 6042 C2' C M 218 OK 6044 6040 6043 6062 C2' A M 219 OK 6064 6060 6063 6084 C2' A M 220 OK 6086 6082 6085 6106 C2' C M 221 OK 6108 6104 6107 6126 C2' G M 222 OK 6128 6124 6127 6149 C2' G M 223 OK 6151 6147 6150 6172 C2' U M 224 OK 6174 6170 6173 6192 C2' A M 225 OK 6194 6190 6193 6214 C2' G M 226 OK 6216 6212 6215 6237 C2' G M 227 OK 6239 6235 6238 6260 C2' C M 228 OK 6262 6258 6261 6280 C2' A M 229 OK 6282 6278 6281 6302 C2' G M 230 OK 6304 6300 6303 6325 C2' G M 231 OK 6327 6323 6326 6348 C2' A M 232 OK 6350 6346 6349 6370 C2' C M 233 OK 6372 6368 6371 6390 C2' G M 234 OK 6392 6388 6391 6413 C2' U M 235 OK 6415 6411 6414 6433 C2' C M 236 OK 6435 6431 6434 6453 C2' G M 237 OK 6455 6451 6454 6476 C2' G M 238 OK 6478 6474 6477 6499 C2' C M 239 OK 6501 6497 6500 6519 C2' G M 240 OK 6521 6517 6520 6542 C2' C M 241 OK 6544 6540 6543 6562 C2' U M 242 OK 6564 6560 6563 6582 C2' C M 243 OK 6584 6580 6583 6602 C2' A M 244 OK 6604 6600 6603 6624 C2' C M 245 OK 6626 6622 6625 6644 C2' G M 246 OK 6646 6642 6645 6667 C2' G M 247 OK 6669 6665 6668 6690 C2' G M 248 OK 6692 6688 6691 6713 C2' G M 249 OK 6715 6711 6714 6736 C2' G M 250 OK 6738 6734 6737 6759 C2' U M 251 OK 6761 6757 6760 6779 C2' G M 252 OK 6781 6777 6780 6802 C2' C M 253 OK 6804 6800 6803 6822 C2' G M 254 OK 6824 6820 6823 6845 C2' G M 255 OK 6847 6843 6846 6868 C2' G M 256 OK 6870 6866 6869 6891 C2' A M 257 OK 6893 6889 6892 6913 C2' C M 258 OK 6915 6911 6914 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 4007 C3' G M 123 OK 4005 4008 4009 4030 C3' U M 124 OK 4028 4031 4032 4050 C3' C M 125 OK 4048 4051 4052 4070 C3' U M 126 OK 4068 4071 4072 4090 C3' C M 127 OK 4088 4091 4092 4110 C3' G M 128 OK 4108 4111 4112 4133 C3' U M 129 OK 4131 4134 4135 4153 C3' C M 130 OK 4151 4154 4155 4173 C3' C M 131 OK 4171 4174 4175 4193 C3' C M 132 OK 4191 4194 4195 4213 C3' G M 133 OK 4211 4214 4215 4236 C3' U M 134 OK 4234 4237 4238 4256 C3' G M 135 OK 4254 4257 4258 4279 C3' G M 136 OK 4277 4280 4281 4302 C3' G M 137 OK 4300 4303 4304 4325 C3' G M 138 OK 4323 4326 4327 4348 C3' C M 139 OK 4346 4349 4350 4368 C3' U M 140 OK 4366 4369 4370 4388 C3' C M 141 OK 4386 4389 4390 4408 C3' G M 142 OK 4406 4409 4410 4431 C3' G M 143 OK 4429 4432 4433 4454 C3' C M 144 OK 4452 4455 4456 4474 C3' G M 145 OK 4472 4475 4476 4497 C3' G M 146 OK 4495 4498 4499 4520 C3' U M 147 OK 4518 4521 4522 4540 C3' G M 148 OK 4538 4541 4542 4563 C3' G M 149 OK 4561 4564 4565 4586 C3' G M 150 OK 4584 4587 4588 4609 C3' G M 151 OK 4607 4610 4611 4632 C3' G M 152 OK 4630 4633 4634 4655 C3' A M 153 OK 4653 4656 4657 4677 C3' G M 154 OK 4675 4678 4679 4700 C3' C M 155 OK 4698 4701 4702 4720 C3' A M 156 OK 4718 4721 4722 4742 C3' U M 157 OK 4740 4743 4744 4762 C3' C M 158 OK 4760 4763 4764 4782 C3' U M 159 OK 4780 4783 4784 4802 C3' C M 160 OK 4800 4803 4804 4822 C3' C M 161 OK 4820 4823 4824 4842 C3' U M 162 OK 4840 4843 4844 4862 C3' G M 163 OK 4860 4863 4864 4885 C3' U M 164 OK 4883 4886 4887 4905 C3' A M 165 OK 4903 4906 4907 4927 C3' G M 166 OK 4925 4928 4929 4950 C3' G M 167 OK 4948 4951 4952 4973 C3' G M 168 OK 4971 4974 4975 4996 C3' G M 169 OK 4994 4997 4998 5019 C3' A M 170 OK 5017 5020 5021 5041 C3' G M 171 OK 5039 5042 5043 5064 C3' A M 172 OK 5062 5065 5066 5086 C3' U M 173 OK 5084 5087 5088 5106 C3' G M 174 OK 5104 5107 5108 5129 C3' U M 175 OK 5127 5130 5131 5149 C3' A M 176 OK 5147 5150 5151 5171 C3' A M 177 OK 5169 5172 5173 5193 C3' C M 178 OK 5191 5194 5195 5213 C3' C M 179 OK 5211 5214 5215 5233 C3' C M 180 OK 5231 5234 5235 5253 C3' C M 181 OK 5251 5254 5255 5273 C3' C M 182 OK 5271 5274 5275 5293 C3' U M 183 OK 5291 5294 5295 5313 C3' U M 184 OK 5311 5314 5315 5333 C3' U M 185 OK 5331 5334 5335 5353 C3' A M 186 OK 5351 5354 5355 5375 C3' C M 187 OK 5373 5376 5377 5395 C3' C M 188 OK 5393 5396 5397 5415 C3' U M 189 OK 5413 5416 5417 5435 C3' G M 190 OK 5433 5436 5437 5458 C3' C M 191 OK 5456 5459 5460 5478 C3' C M 192 OK 5476 5479 5480 5498 C3' G M 193 OK 5496 5499 5500 5521 C3' A M 194 OK 5519 5522 5523 5543 C3' A M 195 OK 5541 5544 5545 5565 C3' C M 196 OK 5563 5566 5567 5585 C3' C M 197 OK 5583 5586 5587 5605 C3' C M 198 OK 5603 5606 5607 5625 C3' C M 199 OK 5623 5626 5627 5645 C3' G M 200 OK 5643 5646 5647 5668 C3' C M 201 OK 5666 5669 5670 5688 C3' C M 202 OK 5686 5689 5690 5708 C3' A M 203 OK 5706 5709 5710 5730 C3' G M 204 OK 5728 5731 5732 5753 C3' G M 205 OK 5751 5754 5755 5776 C3' C M 206 OK 5774 5777 5778 5796 C3' C M 207 OK 5794 5797 5798 5816 C3' C M 208 OK 5814 5817 5818 5836 C3' G M 209 OK 5834 5837 5838 5859 C3' G M 210 OK 5857 5860 5861 5882 C3' A M 211 OK 5880 5883 5884 5904 C3' A M 212 OK 5902 5905 5906 5926 C3' G M 213 OK 5924 5927 5928 5949 C3' G M 214 OK 5947 5950 5951 5972 C3' G M 215 OK 5970 5973 5974 5995 C3' A M 216 OK 5993 5996 5997 6017 C3' G M 217 OK 6015 6018 6019 6040 C3' C M 218 OK 6038 6041 6042 6060 C3' A M 219 OK 6058 6061 6062 6082 C3' A M 220 OK 6080 6083 6084 6104 C3' C M 221 OK 6102 6105 6106 6124 C3' G M 222 OK 6122 6125 6126 6147 C3' G M 223 OK 6145 6148 6149 6170 C3' U M 224 OK 6168 6171 6172 6190 C3' A M 225 OK 6188 6191 6192 6212 C3' G M 226 OK 6210 6213 6214 6235 C3' G M 227 OK 6233 6236 6237 6258 C3' C M 228 OK 6256 6259 6260 6278 C3' A M 229 OK 6276 6279 6280 6300 C3' G M 230 OK 6298 6301 6302 6323 C3' G M 231 OK 6321 6324 6325 6346 C3' A M 232 OK 6344 6347 6348 6368 C3' C M 233 OK 6366 6369 6370 6388 C3' G M 234 OK 6386 6389 6390 6411 C3' U M 235 OK 6409 6412 6413 6431 C3' C M 236 OK 6429 6432 6433 6451 C3' G M 237 OK 6449 6452 6453 6474 C3' G M 238 OK 6472 6475 6476 6497 C3' C M 239 OK 6495 6498 6499 6517 C3' G M 240 OK 6515 6518 6519 6540 C3' C M 241 OK 6538 6541 6542 6560 C3' U M 242 OK 6558 6561 6562 6580 C3' C M 243 OK 6578 6581 6582 6600 C3' A M 244 OK 6598 6601 6602 6622 C3' C M 245 OK 6620 6623 6624 6642 C3' G M 246 OK 6640 6643 6644 6665 C3' G M 247 OK 6663 6666 6667 6688 C3' G M 248 OK 6686 6689 6690 6711 C3' G M 249 OK 6709 6712 6713 6734 C3' G M 250 OK 6732 6735 6736 6757 C3' U M 251 OK 6755 6758 6759 6777 C3' G M 252 OK 6775 6778 6779 6800 C3' C M 253 OK 6798 6801 6802 6820 C3' G M 254 OK 6818 6821 6822 6843 C3' G M 255 OK 6841 6844 6845 6866 C3' G M 256 OK 6864 6867 6868 6889 C3' A M 257 OK 6887 6890 6891 6911 C3' C M 258 OK 6909 6912 6913 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 4005 C4' G M 123 OK 4007 4004 4006 4028 C4' U M 124 OK 4030 4027 4029 4048 C4' C M 125 OK 4050 4047 4049 4068 C4' U M 126 OK 4070 4067 4069 4088 C4' C M 127 OK 4090 4087 4089 4108 C4' G M 128 OK 4110 4107 4109 4131 C4' U M 129 OK 4133 4130 4132 4151 C4' C M 130 OK 4153 4150 4152 4171 C4' C M 131 OK 4173 4170 4172 4191 C4' C M 132 OK 4193 4190 4192 4211 C4' G M 133 OK 4213 4210 4212 4234 C4' U M 134 OK 4236 4233 4235 4254 C4' G M 135 OK 4256 4253 4255 4277 C4' G M 136 OK 4279 4276 4278 4300 C4' G M 137 OK 4302 4299 4301 4323 C4' G M 138 OK 4325 4322 4324 4346 C4' C M 139 OK 4348 4345 4347 4366 C4' U M 140 OK 4368 4365 4367 4386 C4' C M 141 OK 4388 4385 4387 4406 C4' G M 142 OK 4408 4405 4407 4429 C4' G M 143 OK 4431 4428 4430 4452 C4' C M 144 OK 4454 4451 4453 4472 C4' G M 145 OK 4474 4471 4473 4495 C4' G M 146 OK 4497 4494 4496 4518 C4' U M 147 OK 4520 4517 4519 4538 C4' G M 148 OK 4540 4537 4539 4561 C4' G M 149 OK 4563 4560 4562 4584 C4' G M 150 OK 4586 4583 4585 4607 C4' G M 151 OK 4609 4606 4608 4630 C4' G M 152 OK 4632 4629 4631 4653 C4' A M 153 OK 4655 4652 4654 4675 C4' G M 154 OK 4677 4674 4676 4698 C4' C M 155 OK 4700 4697 4699 4718 C4' A M 156 OK 4720 4717 4719 4740 C4' U M 157 OK 4742 4739 4741 4760 C4' C M 158 OK 4762 4759 4761 4780 C4' U M 159 OK 4782 4779 4781 4800 C4' C M 160 OK 4802 4799 4801 4820 C4' C M 161 OK 4822 4819 4821 4840 C4' U M 162 OK 4842 4839 4841 4860 C4' G M 163 OK 4862 4859 4861 4883 C4' U M 164 OK 4885 4882 4884 4903 C4' A M 165 OK 4905 4902 4904 4925 C4' G M 166 OK 4927 4924 4926 4948 C4' G M 167 OK 4950 4947 4949 4971 C4' G M 168 OK 4973 4970 4972 4994 C4' G M 169 OK 4996 4993 4995 5017 C4' A M 170 OK 5019 5016 5018 5039 C4' G M 171 OK 5041 5038 5040 5062 C4' A M 172 OK 5064 5061 5063 5084 C4' U M 173 OK 5086 5083 5085 5104 C4' G M 174 OK 5106 5103 5105 5127 C4' U M 175 OK 5129 5126 5128 5147 C4' A M 176 OK 5149 5146 5148 5169 C4' A M 177 OK 5171 5168 5170 5191 C4' C M 178 OK 5193 5190 5192 5211 C4' C M 179 OK 5213 5210 5212 5231 C4' C M 180 OK 5233 5230 5232 5251 C4' C M 181 OK 5253 5250 5252 5271 C4' C M 182 OK 5273 5270 5272 5291 C4' U M 183 OK 5293 5290 5292 5311 C4' U M 184 OK 5313 5310 5312 5331 C4' U M 185 OK 5333 5330 5332 5351 C4' A M 186 OK 5353 5350 5352 5373 C4' C M 187 OK 5375 5372 5374 5393 C4' C M 188 OK 5395 5392 5394 5413 C4' U M 189 OK 5415 5412 5414 5433 C4' G M 190 OK 5435 5432 5434 5456 C4' C M 191 OK 5458 5455 5457 5476 C4' C M 192 OK 5478 5475 5477 5496 C4' G M 193 OK 5498 5495 5497 5519 C4' A M 194 OK 5521 5518 5520 5541 C4' A M 195 OK 5543 5540 5542 5563 C4' C M 196 OK 5565 5562 5564 5583 C4' C M 197 OK 5585 5582 5584 5603 C4' C M 198 OK 5605 5602 5604 5623 C4' C M 199 OK 5625 5622 5624 5643 C4' G M 200 OK 5645 5642 5644 5666 C4' C M 201 OK 5668 5665 5667 5686 C4' C M 202 OK 5688 5685 5687 5706 C4' A M 203 OK 5708 5705 5707 5728 C4' G M 204 OK 5730 5727 5729 5751 C4' G M 205 OK 5753 5750 5752 5774 C4' C M 206 OK 5776 5773 5775 5794 C4' C M 207 OK 5796 5793 5795 5814 C4' C M 208 OK 5816 5813 5815 5834 C4' G M 209 OK 5836 5833 5835 5857 C4' G M 210 OK 5859 5856 5858 5880 C4' A M 211 OK 5882 5879 5881 5902 C4' A M 212 OK 5904 5901 5903 5924 C4' G M 213 OK 5926 5923 5925 5947 C4' G M 214 OK 5949 5946 5948 5970 C4' G M 215 OK 5972 5969 5971 5993 C4' A M 216 OK 5995 5992 5994 6015 C4' G M 217 OK 6017 6014 6016 6038 C4' C M 218 OK 6040 6037 6039 6058 C4' A M 219 OK 6060 6057 6059 6080 C4' A M 220 OK 6082 6079 6081 6102 C4' C M 221 OK 6104 6101 6103 6122 C4' G M 222 OK 6124 6121 6123 6145 C4' G M 223 OK 6147 6144 6146 6168 C4' U M 224 OK 6170 6167 6169 6188 C4' A M 225 OK 6190 6187 6189 6210 C4' G M 226 OK 6212 6209 6211 6233 C4' G M 227 OK 6235 6232 6234 6256 C4' C M 228 OK 6258 6255 6257 6276 C4' A M 229 OK 6278 6275 6277 6298 C4' G M 230 OK 6300 6297 6299 6321 C4' G M 231 OK 6323 6320 6322 6344 C4' A M 232 OK 6346 6343 6345 6366 C4' C M 233 OK 6368 6365 6367 6386 C4' G M 234 OK 6388 6385 6387 6409 C4' U M 235 OK 6411 6408 6410 6429 C4' C M 236 OK 6431 6428 6430 6449 C4' G M 237 OK 6451 6448 6450 6472 C4' G M 238 OK 6474 6471 6473 6495 C4' C M 239 OK 6497 6494 6496 6515 C4' G M 240 OK 6517 6514 6516 6538 C4' C M 241 OK 6540 6537 6539 6558 C4' U M 242 OK 6560 6557 6559 6578 C4' C M 243 OK 6580 6577 6579 6598 C4' A M 244 OK 6600 6597 6599 6620 C4' C M 245 OK 6622 6619 6621 6640 C4' G M 246 OK 6642 6639 6641 6663 C4' G M 247 OK 6665 6662 6664 6686 C4' G M 248 OK 6688 6685 6687 6709 C4' G M 249 OK 6711 6708 6710 6732 C4' G M 250 OK 6734 6731 6733 6755 C4' U M 251 OK 6757 6754 6756 6775 C4' G M 252 OK 6777 6774 6776 6798 C4' C M 253 OK 6800 6797 6799 6818 C4' G M 254 OK 6820 6817 6819 6841 C4' G M 255 OK 6843 6840 6842 6864 C4' G M 256 OK 6866 6863 6865 6887 C4' A M 257 OK 6889 6886 6888 6909 C4' C M 258 OK 6911 6908 6910 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 4004 C5' G M 123 4003 4005 4027 C5' U M 124 4026 4028 4047 C5' C M 125 4046 4048 4067 C5' U M 126 4066 4068 4087 C5' C M 127 4086 4088 4107 C5' G M 128 4106 4108 4130 C5' U M 129 4129 4131 4150 C5' C M 130 4149 4151 4170 C5' C M 131 4169 4171 4190 C5' C M 132 4189 4191 4210 C5' G M 133 4209 4211 4233 C5' U M 134 4232 4234 4253 C5' G M 135 4252 4254 4276 C5' G M 136 4275 4277 4299 C5' G M 137 4298 4300 4322 C5' G M 138 4321 4323 4345 C5' C M 139 4344 4346 4365 C5' U M 140 4364 4366 4385 C5' C M 141 4384 4386 4405 C5' G M 142 4404 4406 4428 C5' G M 143 4427 4429 4451 C5' C M 144 4450 4452 4471 C5' G M 145 4470 4472 4494 C5' G M 146 4493 4495 4517 C5' U M 147 4516 4518 4537 C5' G M 148 4536 4538 4560 C5' G M 149 4559 4561 4583 C5' G M 150 4582 4584 4606 C5' G M 151 4605 4607 4629 C5' G M 152 4628 4630 4652 C5' A M 153 4651 4653 4674 C5' G M 154 4673 4675 4697 C5' C M 155 4696 4698 4717 C5' A M 156 4716 4718 4739 C5' U M 157 4738 4740 4759 C5' C M 158 4758 4760 4779 C5' U M 159 4778 4780 4799 C5' C M 160 4798 4800 4819 C5' C M 161 4818 4820 4839 C5' U M 162 4838 4840 4859 C5' G M 163 4858 4860 4882 C5' U M 164 4881 4883 4902 C5' A M 165 4901 4903 4924 C5' G M 166 4923 4925 4947 C5' G M 167 4946 4948 4970 C5' G M 168 4969 4971 4993 C5' G M 169 4992 4994 5016 C5' A M 170 5015 5017 5038 C5' G M 171 5037 5039 5061 C5' A M 172 5060 5062 5083 C5' U M 173 5082 5084 5103 C5' G M 174 5102 5104 5126 C5' U M 175 5125 5127 5146 C5' A M 176 5145 5147 5168 C5' A M 177 5167 5169 5190 C5' C M 178 5189 5191 5210 C5' C M 179 5209 5211 5230 C5' C M 180 5229 5231 5250 C5' C M 181 5249 5251 5270 C5' C M 182 5269 5271 5290 C5' U M 183 5289 5291 5310 C5' U M 184 5309 5311 5330 C5' U M 185 5329 5331 5350 C5' A M 186 5349 5351 5372 C5' C M 187 5371 5373 5392 C5' C M 188 5391 5393 5412 C5' U M 189 5411 5413 5432 C5' G M 190 5431 5433 5455 C5' C M 191 5454 5456 5475 C5' C M 192 5474 5476 5495 C5' G M 193 5494 5496 5518 C5' A M 194 5517 5519 5540 C5' A M 195 5539 5541 5562 C5' C M 196 5561 5563 5582 C5' C M 197 5581 5583 5602 C5' C M 198 5601 5603 5622 C5' C M 199 5621 5623 5642 C5' G M 200 5641 5643 5665 C5' C M 201 5664 5666 5685 C5' C M 202 5684 5686 5705 C5' A M 203 5704 5706 5727 C5' G M 204 5726 5728 5750 C5' G M 205 5749 5751 5773 C5' C M 206 5772 5774 5793 C5' C M 207 5792 5794 5813 C5' C M 208 5812 5814 5833 C5' G M 209 5832 5834 5856 C5' G M 210 5855 5857 5879 C5' A M 211 5878 5880 5901 C5' A M 212 5900 5902 5923 C5' G M 213 5922 5924 5946 C5' G M 214 5945 5947 5969 C5' G M 215 5968 5970 5992 C5' A M 216 5991 5993 6014 C5' G M 217 6013 6015 6037 C5' C M 218 6036 6038 6057 C5' A M 219 6056 6058 6079 C5' A M 220 6078 6080 6101 C5' C M 221 6100 6102 6121 C5' G M 222 6120 6122 6144 C5' G M 223 6143 6145 6167 C5' U M 224 6166 6168 6187 C5' A M 225 6186 6188 6209 C5' G M 226 6208 6210 6232 C5' G M 227 6231 6233 6255 C5' C M 228 6254 6256 6275 C5' A M 229 6274 6276 6297 C5' G M 230 6296 6298 6320 C5' G M 231 6319 6321 6343 C5' A M 232 6342 6344 6365 C5' C M 233 6364 6366 6385 C5' G M 234 6384 6386 6408 C5' U M 235 6407 6409 6428 C5' C M 236 6427 6429 6448 C5' G M 237 6447 6449 6471 C5' G M 238 6470 6472 6494 C5' C M 239 6493 6495 6514 C5' G M 240 6513 6515 6537 C5' C M 241 6536 6538 6557 C5' U M 242 6556 6558 6577 C5' C M 243 6576 6578 6597 C5' A M 244 6596 6598 6619 C5' C M 245 6618 6620 6639 C5' G M 246 6638 6640 6662 C5' G M 247 6661 6663 6685 C5' G M 248 6684 6686 6708 C5' G M 249 6707 6709 6731 C5' G M 250 6730 6732 6754 C5' U M 251 6753 6755 6774 C5' G M 252 6773 6775 6797 C5' C M 253 6796 6798 6817 C5' G M 254 6816 6818 6840 C5' G M 255 6839 6841 6863 C5' G M 256 6862 6864 6886 C5' A M 257 6885 6887 6908 C5' C M 258 6907 6909 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 4023 P U M 124 distorted distorted 4008 4024 4025 4026 4043 P C M 125 distorted distorted 4031 4044 4045 4046 4063 P U M 126 distorted distorted 4051 4064 4065 4066 4083 P C M 127 distorted distorted 4071 4084 4085 4086 4103 P G M 128 distorted distorted 4091 4104 4105 4106 4126 P U M 129 distorted distorted 4111 4127 4128 4129 4146 P C M 130 distorted distorted 4134 4147 4148 4149 4166 P C M 131 distorted distorted 4154 4167 4168 4169 4186 P C M 132 distorted distorted 4174 4187 4188 4189 4206 P G M 133 distorted distorted 4194 4207 4208 4209 4229 P U M 134 distorted distorted 4214 4230 4231 4232 4249 P G M 135 distorted distorted 4237 4250 4251 4252 4272 P G M 136 distorted distorted 4257 4273 4274 4275 4295 P G M 137 distorted distorted 4280 4296 4297 4298 4318 P G M 138 distorted distorted 4303 4319 4320 4321 4341 P C M 139 distorted distorted 4326 4342 4343 4344 4361 P U M 140 distorted distorted 4349 4362 4363 4364 4381 P C M 141 distorted distorted 4369 4382 4383 4384 4401 P G M 142 distorted distorted 4389 4402 4403 4404 4424 P G M 143 distorted distorted 4409 4425 4426 4427 4447 P C M 144 distorted distorted 4432 4448 4449 4450 4467 P G M 145 distorted distorted 4455 4468 4469 4470 4490 P G M 146 distorted distorted 4475 4491 4492 4493 4513 P U M 147 distorted distorted 4498 4514 4515 4516 4533 P G M 148 distorted distorted 4521 4534 4535 4536 4556 P G M 149 distorted distorted 4541 4557 4558 4559 4579 P G M 150 distorted distorted 4564 4580 4581 4582 4602 P G M 151 distorted distorted 4587 4603 4604 4605 4625 P G M 152 distorted distorted 4610 4626 4627 4628 4648 P A M 153 distorted distorted 4633 4649 4650 4651 4670 P G M 154 distorted distorted 4656 4671 4672 4673 4693 P C M 155 distorted distorted 4678 4694 4695 4696 4713 P A M 156 distorted distorted 4701 4714 4715 4716 4735 P U M 157 distorted distorted 4721 4736 4737 4738 4755 P C M 158 distorted distorted 4743 4756 4757 4758 4775 P U M 159 distorted distorted 4763 4776 4777 4778 4795 P C M 160 distorted distorted 4783 4796 4797 4798 4815 P C M 161 distorted distorted 4803 4816 4817 4818 4835 P U M 162 distorted distorted 4823 4836 4837 4838 4855 P G M 163 distorted distorted 4843 4856 4857 4858 4878 P U M 164 distorted distorted 4863 4879 4880 4881 4898 P A M 165 distorted distorted 4886 4899 4900 4901 4920 P G M 166 distorted distorted 4906 4921 4922 4923 4943 P G M 167 distorted distorted 4928 4944 4945 4946 4966 P G M 168 distorted distorted 4951 4967 4968 4969 4989 P G M 169 distorted distorted 4974 4990 4991 4992 5012 P A M 170 distorted distorted 4997 5013 5014 5015 5034 P G M 171 distorted distorted 5020 5035 5036 5037 5057 P A M 172 distorted distorted 5042 5058 5059 5060 5079 P U M 173 distorted distorted 5065 5080 5081 5082 5099 P G M 174 distorted distorted 5087 5100 5101 5102 5122 P U M 175 distorted distorted 5107 5123 5124 5125 5142 P A M 176 distorted distorted 5130 5143 5144 5145 5164 P A M 177 distorted distorted 5150 5165 5166 5167 5186 P C M 178 distorted distorted 5172 5187 5188 5189 5206 P C M 179 distorted distorted 5194 5207 5208 5209 5226 P C M 180 distorted distorted 5214 5227 5228 5229 5246 P C M 181 distorted distorted 5234 5247 5248 5249 5266 P C M 182 distorted distorted 5254 5267 5268 5269 5286 P U M 183 distorted distorted 5274 5287 5288 5289 5306 P U M 184 distorted distorted 5294 5307 5308 5309 5326 P U M 185 distorted distorted 5314 5327 5328 5329 5346 P A M 186 distorted distorted 5334 5347 5348 5349 5368 P C M 187 distorted distorted 5354 5369 5370 5371 5388 P C M 188 distorted distorted 5376 5389 5390 5391 5408 P U M 189 distorted distorted 5396 5409 5410 5411 5428 P G M 190 distorted distorted 5416 5429 5430 5431 5451 P C M 191 distorted distorted 5436 5452 5453 5454 5471 P C M 192 distorted distorted 5459 5472 5473 5474 5491 P G M 193 distorted distorted 5479 5492 5493 5494 5514 P A M 194 distorted distorted 5499 5515 5516 5517 5536 P A M 195 distorted distorted 5522 5537 5538 5539 5558 P C M 196 distorted distorted 5544 5559 5560 5561 5578 P C M 197 distorted distorted 5566 5579 5580 5581 5598 P C M 198 distorted distorted 5586 5599 5600 5601 5618 P C M 199 distorted distorted 5606 5619 5620 5621 5638 P G M 200 distorted distorted 5626 5639 5640 5641 5661 P C M 201 distorted distorted 5646 5662 5663 5664 5681 P C M 202 distorted distorted 5669 5682 5683 5684 5701 P A M 203 distorted distorted 5689 5702 5703 5704 5723 P G M 204 distorted distorted 5709 5724 5725 5726 5746 P G M 205 distorted distorted 5731 5747 5748 5749 5769 P C M 206 distorted distorted 5754 5770 5771 5772 5789 P C M 207 distorted distorted 5777 5790 5791 5792 5809 P C M 208 distorted distorted 5797 5810 5811 5812 5829 P G M 209 distorted distorted 5817 5830 5831 5832 5852 P G M 210 distorted distorted 5837 5853 5854 5855 5875 P A M 211 distorted distorted 5860 5876 5877 5878 5897 P A M 212 distorted distorted 5883 5898 5899 5900 5919 P G M 213 distorted distorted 5905 5920 5921 5922 5942 P G M 214 distorted distorted 5927 5943 5944 5945 5965 P G M 215 distorted distorted 5950 5966 5967 5968 5988 P A M 216 distorted distorted 5973 5989 5990 5991 6010 P G M 217 distorted distorted 5996 6011 6012 6013 6033 P C M 218 distorted distorted 6018 6034 6035 6036 6053 P A M 219 distorted distorted 6041 6054 6055 6056 6075 P A M 220 distorted distorted 6061 6076 6077 6078 6097 P C M 221 distorted distorted 6083 6098 6099 6100 6117 P G M 222 distorted distorted 6105 6118 6119 6120 6140 P G M 223 distorted distorted 6125 6141 6142 6143 6163 P U M 224 distorted distorted 6148 6164 6165 6166 6183 P A M 225 distorted distorted 6171 6184 6185 6186 6205 P G M 226 distorted distorted 6191 6206 6207 6208 6228 P G M 227 distorted distorted 6213 6229 6230 6231 6251 P C M 228 distorted distorted 6236 6252 6253 6254 6271 P A M 229 distorted distorted 6259 6272 6273 6274 6293 P G M 230 distorted distorted 6279 6294 6295 6296 6316 P G M 231 distorted distorted 6301 6317 6318 6319 6339 P A M 232 distorted distorted 6324 6340 6341 6342 6361 P C M 233 distorted distorted 6347 6362 6363 6364 6381 P G M 234 distorted distorted 6369 6382 6383 6384 6404 P U M 235 distorted distorted 6389 6405 6406 6407 6424 P C M 236 distorted distorted 6412 6425 6426 6427 6444 P G M 237 distorted distorted 6432 6445 6446 6447 6467 P G M 238 distorted distorted 6452 6468 6469 6470 6490 P C M 239 distorted distorted 6475 6491 6492 6493 6510 P G M 240 distorted distorted 6498 6511 6512 6513 6533 P C M 241 distorted distorted 6518 6534 6535 6536 6553 P U M 242 distorted distorted 6541 6554 6555 6556 6573 P C M 243 distorted distorted 6561 6574 6575 6576 6593 P A M 244 distorted distorted 6581 6594 6595 6596 6615 P C M 245 distorted distorted 6601 6616 6617 6618 6635 P G M 246 distorted distorted 6623 6636 6637 6638 6658 P G M 247 distorted distorted 6643 6659 6660 6661 6681 P G M 248 distorted distorted 6666 6682 6683 6684 6704 P G M 249 distorted distorted 6689 6705 6706 6707 6727 P G M 250 distorted distorted 6712 6728 6729 6730 6750 P U M 251 distorted distorted 6735 6751 6752 6753 6770 P G M 252 distorted distorted 6758 6771 6772 6773 6793 P C M 253 distorted distorted 6778 6794 6795 6796 6813 P G M 254 distorted distorted 6801 6814 6815 6816 6836 P G M 255 distorted distorted 6821 6837 6838 6839 6859 P G M 256 distorted distorted 6844 6860 6861 6862 6882 P A M 257 distorted distorted 6867 6883 6884 6885 6904 P C M 258 distorted distorted 6890 6905 6906 6907 6925 P PO4 D 1 ---------------------------------------------------------------------------------