ID code: '3KTV' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 1739 C1' G A 122 beta 1734 1740 1737 1762 C1' C A 123 beta 1757 1763 1760 1782 C1' G A 124 beta 1777 1783 1780 1805 C1' G A 125 beta 1800 1806 1803 1828 C1' C A 126 beta 1823 1829 1826 1848 C1' A A 127 beta 1843 1849 1846 1870 C1' U A 128 alpha 1865 2840 1868 1890 C1' C A 129 beta 1885 1891 1888 1910 C1' A A 130 beta 1905 1911 1908 1932 C1' A A 131 beta 1927 1933 1930 1954 C1' U A 132 beta 1949 1955 1952 1974 C1' A A 133 beta 1969 1975 1972 1996 C1' U A 134 beta 1991 1997 1994 2016 C1' G A 135 beta 2011 2017 2014 2039 C1' G A 136 beta 2034 2040 2037 2062 C1' U A 137 beta 2057 2063 2060 2082 C1' G A 138 beta 2077 2083 2080 2105 C1' A A 139 beta 2100 2106 2103 2127 C1' C A 140 beta 2122 2128 2125 2147 C1' C A 141 beta 2142 2148 2145 2167 C1' U A 142 beta 2162 2168 2165 2187 C1' C A 143 beta 2182 2188 2185 2207 C1' C A 144 beta 2202 2208 2205 2227 C1' C A 145 beta 2222 2228 2225 2247 C1' G A 146 beta 2242 2248 2245 2270 C1' G A 147 beta 2265 2271 2268 2293 C1' G A 148 beta 2288 2294 2291 2316 C1' A A 149 beta 2311 2317 2314 2338 C1' G A 150 beta 2333 2339 2336 2361 C1' C A 151 beta 2356 2362 2359 2381 C1' G A 152 beta 2376 2382 2379 2404 C1' G A 153 beta 2399 2405 2402 2427 C1' G A 154 beta 2422 2428 2425 2450 C1' G A 155 beta 2445 2451 2448 2473 C1' G A 156 beta 2468 2474 2471 2496 C1' A A 157 beta 2491 2497 2494 2518 C1' C A 158 beta 2513 2519 2516 2538 C1' C A 159 beta 2533 2539 2536 2558 C1' A A 160 beta 2553 2559 2556 2580 C1' C A 161 beta 2575 2581 2578 2600 C1' C A 162 beta 2595 2601 2598 2620 C1' A A 163 beta 2615 2621 2618 2642 C1' G A 164 beta 2637 2643 2640 2665 C1' G A 165 beta 2660 2666 2663 2688 C1' U A 166 beta 2683 2689 2686 2708 C1' U A 167 beta 2703 2709 2706 2728 C1' G A 168 beta 2723 2729 2726 2751 C1' C A 169 beta 2746 2752 2749 2771 C1' C A 170 beta 2766 2772 2769 2791 C1' U A 171 beta 2786 2792 2789 2811 C1' A A 172 beta 2806 2812 2809 2833 C1' A A 173 beta 2828 2834 2831 2855 C1' G A 174 beta 2850 2856 2853 2878 C1' G A 175 beta 2873 2879 2876 2901 C1' A A 176 beta 2896 2902 2899 2923 C1' G A 177 beta 2918 2924 2921 2946 C1' G A 178 beta 2941 2947 2944 2969 C1' G A 179 beta 2964 2970 2967 2992 C1' G A 180 beta 2987 2993 2990 3015 C1' U A 181 beta 3010 3016 3013 3035 C1' G A 182 beta 3030 3036 3033 3058 C1' A A 183 beta 3053 3059 3056 3080 C1' A A 184 beta 3075 3081 3078 3102 C1' C A 185 beta 3097 3103 3100 3122 C1' C A 186 beta 3117 3123 3120 3142 C1' G A 187 beta 3137 3143 3140 3165 C1' G A 188 beta 3160 3166 3163 3188 C1' C A 189 beta 3183 3189 3186 3208 C1' C A 190 beta 3203 3209 3206 3228 C1' C A 191 beta 3223 3229 3226 3248 C1' A A 192 beta 3243 3249 3246 3270 C1' G A 193 beta 3265 3271 3268 3293 C1' G A 194 beta 3288 3294 3291 3316 C1' U A 195 beta 3311 3317 3314 3336 C1' C A 196 beta 3331 3337 3334 3356 C1' G A 197 beta 3351 3357 3354 3379 C1' G A 198 beta 3374 3380 3377 3402 C1' A A 199 beta 3397 3403 3400 3424 C1' A A 200 beta 3419 3425 3422 3446 C1' A A 201 beta 3441 3447 3444 3468 C1' C A 202 beta 3463 3469 3466 3488 C1' G A 203 beta 3483 3489 3486 3511 C1' G A 204 beta 3506 3512 3509 3534 C1' A A 205 beta 3529 3535 3532 3556 C1' G A 206 beta 3551 3557 3554 3579 C1' C A 207 beta 3574 3580 3577 3599 C1' A A 208 beta 3594 3600 3597 3621 C1' G A 209 beta 3616 3622 3619 3644 C1' G A 210 beta 3639 3645 3642 3667 C1' U A 211 beta 3662 3668 3665 3687 C1' C A 212 beta 3682 3688 3685 3707 C1' A A 213 beta 3702 3708 3705 3729 C1' A A 214 beta 3724 3730 3727 3751 C1' A A 215 beta 3746 3752 3749 3773 C1' A A 216 beta 3768 3774 3771 3795 C1' C A 217 beta 3790 3796 3793 3815 C1' U A 218 beta 3810 3816 3813 3835 C1' C A 219 beta 3830 3836 3833 3855 C1' C A 220 beta 3850 3856 3853 3875 C1' C A 221 beta 3870 3876 3873 3895 C1' G A 222 beta 3890 3896 3893 3918 C1' U A 223 beta 3913 3919 3916 3938 C1' G A 224 beta 3933 3939 3936 3961 C1' C A 225 beta 3956 3962 3959 3981 C1' U A 226 beta 3976 3982 3979 4001 C1' G A 227 beta 3996 4002 3999 4024 C1' U A 228 beta 4019 4025 4022 4044 C1' A A 229 beta 4039 4045 4042 4072 C1' GDP C 122 beta 4067 4073 4070 4095 C1' C C 123 beta 4090 4096 4093 4115 C1' G C 124 beta 4110 4116 4113 4138 C1' G C 125 beta 4133 4139 4136 4161 C1' C C 126 beta 4156 4162 4159 4181 C1' A C 127 beta 4176 4182 4179 4203 C1' U C 128 beta 4198 4204 4201 4223 C1' C C 129 beta 4218 4224 4221 4243 C1' A C 130 beta 4238 4244 4241 4265 C1' A C 131 beta 4260 4266 4263 4287 C1' U C 132 beta 4282 4288 4285 4307 C1' A C 133 beta 4302 4308 4305 4329 C1' U C 134 beta 4324 4330 4327 4349 C1' G C 135 beta 4344 4350 4347 4372 C1' G C 136 beta 4367 4373 4370 4395 C1' U C 137 beta 4390 4396 4393 4415 C1' G C 138 beta 4410 4416 4413 4438 C1' A C 139 beta 4433 4439 4436 4460 C1' C C 140 beta 4455 4461 4458 4480 C1' C C 141 beta 4475 4481 4478 4500 C1' U C 142 beta 4495 4501 4498 4520 C1' C C 143 beta 4515 4521 4518 4540 C1' C C 144 beta 4535 4541 4538 4560 C1' C C 145 beta 4555 4561 4558 4580 C1' G C 146 beta 4575 4581 4578 4603 C1' G C 147 beta 4598 4604 4601 4626 C1' G C 148 beta 4621 4627 4624 4649 C1' A C 149 beta 4644 4650 4647 4671 C1' G C 150 beta 4666 4672 4669 4694 C1' C C 151 beta 4689 4695 4692 4714 C1' G C 152 beta 4709 4715 4712 4737 C1' G C 153 beta 4732 4738 4735 4760 C1' G C 154 beta 4755 4761 4758 4783 C1' G C 155 beta 4778 4784 4781 4806 C1' G C 156 beta 4801 4807 4804 4829 C1' A C 157 beta 4824 4830 4827 4851 C1' C C 158 beta 4846 4852 4849 4871 C1' C C 159 beta 4866 4872 4869 4891 C1' A C 160 beta 4886 4892 4889 4913 C1' C C 161 beta 4908 4914 4911 4933 C1' C C 162 beta 4928 4934 4931 4953 C1' A C 163 beta 4948 4954 4951 4975 C1' G C 164 beta 4970 4976 4973 4998 C1' G C 165 beta 4993 4999 4996 5021 C1' U C 166 beta 5016 5022 5019 5041 C1' U C 167 beta 5036 5042 5039 5061 C1' G C 168 beta 5056 5062 5059 5084 C1' C C 169 beta 5079 5085 5082 5104 C1' C C 170 beta 5099 5105 5102 5124 C1' U C 171 beta 5119 5125 5122 5144 C1' A C 172 beta 5139 5145 5142 5166 C1' A C 173 beta 5161 5167 5164 5188 C1' G C 174 beta 5183 5189 5186 5211 C1' G C 175 beta 5206 5212 5209 5234 C1' A C 176 beta 5229 5235 5232 5256 C1' G C 177 beta 5251 5257 5254 5279 C1' G C 178 beta 5274 5280 5277 5302 C1' G C 179 beta 5297 5303 5300 5325 C1' G C 180 beta 5320 5326 5323 5348 C1' U C 181 beta 5343 5349 5346 5368 C1' G C 182 beta 5363 5369 5366 5391 C1' A C 183 beta 5386 5392 5389 5413 C1' A C 184 beta 5408 5414 5411 5435 C1' C C 185 beta 5430 5436 5433 5455 C1' C C 186 beta 5450 5456 5453 5475 C1' G C 187 beta 5470 5476 5473 5498 C1' G C 188 beta 5493 5499 5496 5521 C1' C C 189 beta 5516 5522 5519 5541 C1' C C 190 beta 5536 5542 5539 5561 C1' C C 191 beta 5556 5562 5559 5581 C1' A C 192 beta 5576 5582 5579 5603 C1' G C 193 beta 5598 5604 5601 5626 C1' G C 194 beta 5621 5627 5624 5649 C1' U C 195 beta 5644 5650 5647 5669 C1' C C 196 beta 5664 5670 5667 5689 C1' G C 197 beta 5684 5690 5687 5712 C1' G C 198 beta 5707 5713 5710 5735 C1' A C 199 beta 5730 5736 5733 5757 C1' A C 200 beta 5752 5758 5755 5779 C1' A C 201 beta 5774 5780 5777 5801 C1' C C 202 beta 5796 5802 5799 5821 C1' G C 203 beta 5816 5822 5819 5844 C1' G C 204 beta 5839 5845 5842 5867 C1' A C 205 beta 5862 5868 5865 5889 C1' G C 206 beta 5884 5890 5887 5912 C1' C C 207 beta 5907 5913 5910 5932 C1' A C 208 beta 5927 5933 5930 5954 C1' G C 209 beta 5949 5955 5952 5977 C1' G C 210 beta 5972 5978 5975 6000 C1' U C 211 beta 5995 6001 5998 6020 C1' C C 212 beta 6015 6021 6018 6040 C1' A C 213 beta 6035 6041 6038 6062 C1' A C 214 beta 6057 6063 6060 6084 C1' A C 215 beta 6079 6085 6082 6106 C1' A C 216 beta 6101 6107 6104 6128 C1' C C 217 beta 6123 6129 6126 6148 C1' U C 218 beta 6143 6149 6146 6168 C1' C C 219 beta 6163 6169 6166 6188 C1' C C 220 beta 6183 6189 6186 6208 C1' C C 221 beta 6203 6209 6206 6228 C1' G C 222 beta 6223 6229 6226 6251 C1' U C 223 beta 6246 6252 6249 6271 C1' G C 224 beta 6266 6272 6269 6294 C1' C C 225 beta 6289 6295 6292 6314 C1' U C 226 beta 6309 6315 6312 6334 C1' G C 227 beta 6329 6335 6332 6357 C1' U C 228 beta 6352 6358 6355 6377 C1' A C 229 beta 6372 6378 6375 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 1737 C2' G A 122 OK 1739 1735 1738 1760 C2' C A 123 OK 1762 1758 1761 1780 C2' G A 124 OK 1782 1778 1781 1803 C2' G A 125 OK 1805 1801 1804 1826 C2' C A 126 OK 1828 1824 1827 1846 C2' A A 127 OK 1848 1844 1847 1868 C2' U A 128 OK 1870 1866 1869 1888 C2' C A 129 OK 1890 1886 1889 1908 C2' A A 130 OK 1910 1906 1909 1930 C2' A A 131 OK 1932 1928 1931 1952 C2' U A 132 OK 1954 1950 1953 1972 C2' A A 133 OK 1974 1970 1973 1994 C2' U A 134 OK 1996 1992 1995 2014 C2' G A 135 OK 2016 2012 2015 2037 C2' G A 136 OK 2039 2035 2038 2060 C2' U A 137 OK 2062 2058 2061 2080 C2' G A 138 OK 2082 2078 2081 2103 C2' A A 139 OK 2105 2101 2104 2125 C2' C A 140 OK 2127 2123 2126 2145 C2' C A 141 OK 2147 2143 2146 2165 C2' U A 142 OK 2167 2163 2166 2185 C2' C A 143 OK 2187 2183 2186 2205 C2' C A 144 OK 2207 2203 2206 2225 C2' C A 145 OK 2227 2223 2226 2245 C2' G A 146 OK 2247 2243 2246 2268 C2' G A 147 OK 2270 2266 2269 2291 C2' G A 148 OK 2293 2289 2292 2314 C2' A A 149 OK 2316 2312 2315 2336 C2' G A 150 OK 2338 2334 2337 2359 C2' C A 151 OK 2361 2357 2360 2379 C2' G A 152 OK 2381 2377 2380 2402 C2' G A 153 OK 2404 2400 2403 2425 C2' G A 154 OK 2427 2423 2426 2448 C2' G A 155 OK 2450 2446 2449 2471 C2' G A 156 OK 2473 2469 2472 2494 C2' A A 157 OK 2496 2492 2495 2516 C2' C A 158 OK 2518 2514 2517 2536 C2' C A 159 OK 2538 2534 2537 2556 C2' A A 160 OK 2558 2554 2557 2578 C2' C A 161 OK 2580 2576 2579 2598 C2' C A 162 OK 2600 2596 2599 2618 C2' A A 163 OK 2620 2616 2619 2640 C2' G A 164 OK 2642 2638 2641 2663 C2' G A 165 OK 2665 2661 2664 2686 C2' U A 166 OK 2688 2684 2687 2706 C2' U A 167 OK 2708 2704 2707 2726 C2' G A 168 OK 2728 2724 2727 2749 C2' C A 169 OK 2751 2747 2750 2769 C2' C A 170 OK 2771 2767 2770 2789 C2' U A 171 OK 2791 2787 2790 2809 C2' A A 172 OK 2811 2807 2810 2831 C2' A A 173 OK 2833 2829 2832 2853 C2' G A 174 OK 2855 2851 2854 2876 C2' G A 175 OK 2878 2874 2877 2899 C2' A A 176 OK 2901 2897 2900 2921 C2' G A 177 OK 2923 2919 2922 2944 C2' G A 178 OK 2946 2942 2945 2967 C2' G A 179 OK 2969 2965 2968 2990 C2' G A 180 OK 2992 2988 2991 3013 C2' U A 181 OK 3015 3011 3014 3033 C2' G A 182 OK 3035 3031 3034 3056 C2' A A 183 OK 3058 3054 3057 3078 C2' A A 184 OK 3080 3076 3079 3100 C2' C A 185 OK 3102 3098 3101 3120 C2' C A 186 OK 3122 3118 3121 3140 C2' G A 187 OK 3142 3138 3141 3163 C2' G A 188 OK 3165 3161 3164 3186 C2' C A 189 OK 3188 3184 3187 3206 C2' C A 190 OK 3208 3204 3207 3226 C2' C A 191 OK 3228 3224 3227 3246 C2' A A 192 OK 3248 3244 3247 3268 C2' G A 193 OK 3270 3266 3269 3291 C2' G A 194 OK 3293 3289 3292 3314 C2' U A 195 OK 3316 3312 3315 3334 C2' C A 196 OK 3336 3332 3335 3354 C2' G A 197 OK 3356 3352 3355 3377 C2' G A 198 OK 3379 3375 3378 3400 C2' A A 199 OK 3402 3398 3401 3422 C2' A A 200 OK 3424 3420 3423 3444 C2' A A 201 OK 3446 3442 3445 3466 C2' C A 202 OK 3468 3464 3467 3486 C2' G A 203 OK 3488 3484 3487 3509 C2' G A 204 OK 3511 3507 3510 3532 C2' A A 205 OK 3534 3530 3533 3554 C2' G A 206 OK 3556 3552 3555 3577 C2' C A 207 OK 3579 3575 3578 3597 C2' A A 208 OK 3599 3595 3598 3619 C2' G A 209 OK 3621 3617 3620 3642 C2' G A 210 OK 3644 3640 3643 3665 C2' U A 211 OK 3667 3663 3666 3685 C2' C A 212 OK 3687 3683 3686 3705 C2' A A 213 OK 3707 3703 3706 3727 C2' A A 214 OK 3729 3725 3728 3749 C2' A A 215 OK 3751 3747 3750 3771 C2' A A 216 OK 3773 3769 3772 3793 C2' C A 217 OK 3795 3791 3794 3813 C2' U A 218 OK 3815 3811 3814 3833 C2' C A 219 OK 3835 3831 3834 3853 C2' C A 220 OK 3855 3851 3854 3873 C2' C A 221 OK 3875 3871 3874 3893 C2' G A 222 OK 3895 3891 3894 3916 C2' U A 223 OK 3918 3914 3917 3936 C2' G A 224 OK 3938 3934 3937 3959 C2' C A 225 OK 3961 3957 3960 3979 C2' U A 226 OK 3981 3977 3980 3999 C2' G A 227 OK 4001 3997 4000 4022 C2' U A 228 OK 4024 4020 4023 4042 C2' A A 229 OK 4044 4040 4043 4070 C2' GDP C 122 OK 4072 4068 4071 4093 C2' C C 123 OK 4095 4091 4094 4113 C2' G C 124 OK 4115 4111 4114 4136 C2' G C 125 OK 4138 4134 4137 4159 C2' C C 126 OK 4161 4157 4160 4179 C2' A C 127 OK 4181 4177 4180 4201 C2' U C 128 OK 4203 4199 4202 4221 C2' C C 129 OK 4223 4219 4222 4241 C2' A C 130 OK 4243 4239 4242 4263 C2' A C 131 OK 4265 4261 4264 4285 C2' U C 132 OK 4287 4283 4286 4305 C2' A C 133 OK 4307 4303 4306 4327 C2' U C 134 OK 4329 4325 4328 4347 C2' G C 135 OK 4349 4345 4348 4370 C2' G C 136 OK 4372 4368 4371 4393 C2' U C 137 OK 4395 4391 4394 4413 C2' G C 138 OK 4415 4411 4414 4436 C2' A C 139 OK 4438 4434 4437 4458 C2' C C 140 OK 4460 4456 4459 4478 C2' C C 141 OK 4480 4476 4479 4498 C2' U C 142 OK 4500 4496 4499 4518 C2' C C 143 OK 4520 4516 4519 4538 C2' C C 144 OK 4540 4536 4539 4558 C2' C C 145 OK 4560 4556 4559 4578 C2' G C 146 OK 4580 4576 4579 4601 C2' G C 147 OK 4603 4599 4602 4624 C2' G C 148 OK 4626 4622 4625 4647 C2' A C 149 OK 4649 4645 4648 4669 C2' G C 150 OK 4671 4667 4670 4692 C2' C C 151 OK 4694 4690 4693 4712 C2' G C 152 OK 4714 4710 4713 4735 C2' G C 153 OK 4737 4733 4736 4758 C2' G C 154 OK 4760 4756 4759 4781 C2' G C 155 OK 4783 4779 4782 4804 C2' G C 156 OK 4806 4802 4805 4827 C2' A C 157 OK 4829 4825 4828 4849 C2' C C 158 OK 4851 4847 4850 4869 C2' C C 159 OK 4871 4867 4870 4889 C2' A C 160 OK 4891 4887 4890 4911 C2' C C 161 OK 4913 4909 4912 4931 C2' C C 162 OK 4933 4929 4932 4951 C2' A C 163 OK 4953 4949 4952 4973 C2' G C 164 OK 4975 4971 4974 4996 C2' G C 165 OK 4998 4994 4997 5019 C2' U C 166 OK 5021 5017 5020 5039 C2' U C 167 OK 5041 5037 5040 5059 C2' G C 168 OK 5061 5057 5060 5082 C2' C C 169 OK 5084 5080 5083 5102 C2' C C 170 OK 5104 5100 5103 5122 C2' U C 171 OK 5124 5120 5123 5142 C2' A C 172 OK 5144 5140 6270 5164 C2' A C 173 OK 5166 5162 5165 5186 C2' G C 174 OK 5188 5184 5187 5209 C2' G C 175 OK 5211 5207 5210 5232 C2' A C 176 OK 5234 5230 5233 5254 C2' G C 177 OK 5256 5252 5255 5277 C2' G C 178 OK 5279 5275 5278 5300 C2' G C 179 OK 5302 5298 5301 5323 C2' G C 180 OK 5325 5321 5324 5346 C2' U C 181 OK 5348 5344 5347 5366 C2' G C 182 OK 5368 5364 5367 5389 C2' A C 183 OK 5391 5387 5390 5411 C2' A C 184 OK 5413 5409 5412 5433 C2' C C 185 OK 5435 5431 5434 5453 C2' C C 186 OK 5455 5451 5454 5473 C2' G C 187 OK 5475 5471 5474 5496 C2' G C 188 OK 5498 5494 5497 5519 C2' C C 189 OK 5521 5517 5520 5539 C2' C C 190 OK 5541 5537 5540 5559 C2' C C 191 OK 5561 5557 5560 5579 C2' A C 192 OK 5581 5577 5580 5601 C2' G C 193 OK 5603 5599 5602 5624 C2' G C 194 OK 5626 5622 5625 5647 C2' U C 195 OK 5649 5645 5648 5667 C2' C C 196 OK 5669 5665 5668 5687 C2' G C 197 OK 5689 5685 5688 5710 C2' G C 198 OK 5712 5708 5711 5733 C2' A C 199 OK 5735 5731 5734 5755 C2' A C 200 OK 5757 5753 5756 5777 C2' A C 201 OK 5779 5775 5778 5799 C2' C C 202 OK 5801 5797 5800 5819 C2' G C 203 OK 5821 5817 5820 5842 C2' G C 204 OK 5844 5840 5843 5865 C2' A C 205 OK 5867 5863 5866 5887 C2' G C 206 OK 5889 5885 5888 5910 C2' C C 207 OK 5912 5908 5911 5930 C2' A C 208 OK 5932 5928 5931 5952 C2' G C 209 OK 5954 5950 5953 5975 C2' G C 210 OK 5977 5973 5976 5998 C2' U C 211 OK 6000 5996 5999 6018 C2' C C 212 OK 6020 6016 6019 6038 C2' A C 213 OK 6040 6036 6039 6060 C2' A C 214 OK 6062 6058 6061 6082 C2' A C 215 OK 6084 6080 6083 6104 C2' A C 216 OK 6106 6102 6105 6126 C2' C C 217 OK 6128 6124 6127 6146 C2' U C 218 OK 6148 6144 6147 6166 C2' C C 219 OK 6168 6164 6167 6186 C2' C C 220 OK 6188 6184 6187 6206 C2' C C 221 OK 6208 6204 6207 6226 C2' G C 222 OK 6228 6224 6227 6249 C2' U C 223 OK 6251 6247 6250 6269 C2' G C 224 OK 6271 6267 6270 6292 C2' C C 225 OK 6294 6290 6293 6312 C2' U C 226 OK 6314 6310 6313 6332 C2' G C 227 OK 6334 6330 6333 6355 C2' U C 228 OK 6357 6353 6356 6375 C2' A C 229 OK 6377 6373 6376 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 1735 C3' G A 122 OK 1733 1736 1737 1758 C3' C A 123 OK 1756 1759 1760 1778 C3' G A 124 OK 1776 1779 1780 1801 C3' G A 125 OK 1799 1802 1803 1824 C3' C A 126 OK 1822 1825 1826 1844 C3' A A 127 OK 1842 1845 1846 1866 C3' U A 128 OK 1864 1867 1868 1886 C3' C A 129 OK 1884 1887 1888 1906 C3' A A 130 OK 1904 1907 1908 1928 C3' A A 131 OK 1926 1929 1930 1950 C3' U A 132 OK 1948 1951 1952 1970 C3' A A 133 OK 1968 1971 1972 1992 C3' U A 134 OK 1990 1993 1994 2012 C3' G A 135 OK 2010 2013 2014 2035 C3' G A 136 OK 2033 2036 2037 2058 C3' U A 137 OK 2056 2059 2060 2078 C3' G A 138 OK 2076 2079 2080 2101 C3' A A 139 OK 2099 2102 2103 2123 C3' C A 140 OK 2121 2124 2125 2143 C3' C A 141 OK 2141 2144 2145 2163 C3' U A 142 OK 2161 2164 2165 2183 C3' C A 143 OK 2181 2184 2185 2203 C3' C A 144 OK 2201 2204 2205 2223 C3' C A 145 OK 2221 2224 2225 2243 C3' G A 146 OK 2241 2244 2245 2266 C3' G A 147 OK 2264 2267 2268 2289 C3' G A 148 OK 2287 2290 2291 2312 C3' A A 149 OK 2310 2313 2314 2334 C3' G A 150 OK 2332 2335 2336 2357 C3' C A 151 OK 2355 2358 2359 2377 C3' G A 152 OK 2375 2378 2379 2400 C3' G A 153 OK 2398 2401 2402 2423 C3' G A 154 OK 2421 2424 2425 2446 C3' G A 155 OK 2444 2447 2448 2469 C3' G A 156 OK 2467 2470 2471 2492 C3' A A 157 OK 2490 2493 2494 2514 C3' C A 158 OK 2512 2515 2516 2534 C3' C A 159 OK 2532 2535 2536 2554 C3' A A 160 OK 2552 2555 2556 2576 C3' C A 161 OK 2574 2577 2578 2596 C3' C A 162 OK 2594 2597 2598 2616 C3' A A 163 OK 2614 2617 2618 2638 C3' G A 164 OK 2636 2639 2640 2661 C3' G A 165 OK 2659 2662 2663 2684 C3' U A 166 OK 2682 2685 2686 2704 C3' U A 167 OK 2702 2705 2706 2724 C3' G A 168 OK 2722 2725 2726 2747 C3' C A 169 OK 2745 2748 2749 2767 C3' C A 170 OK 2765 2768 2769 2787 C3' U A 171 OK 2785 2788 2789 2807 C3' A A 172 OK 2805 2808 2809 2829 C3' A A 173 OK 2827 2830 2831 2851 C3' G A 174 OK 2849 2852 2853 2874 C3' G A 175 OK 2872 2875 2876 2897 C3' A A 176 OK 2895 2898 2899 2919 C3' G A 177 OK 2917 2920 2921 2942 C3' G A 178 OK 2940 2943 2944 2965 C3' G A 179 OK 2963 2966 2967 2988 C3' G A 180 OK 2986 2989 2990 3011 C3' U A 181 OK 3009 3012 3013 3031 C3' G A 182 OK 3029 3032 3033 3054 C3' A A 183 OK 3052 3055 3056 3076 C3' A A 184 OK 3074 3077 3078 3098 C3' C A 185 OK 3096 3099 3100 3118 C3' C A 186 OK 3116 3119 3120 3138 C3' G A 187 OK 3136 3139 3140 3161 C3' G A 188 OK 3159 3162 3163 3184 C3' C A 189 OK 3182 3185 3186 3204 C3' C A 190 OK 3202 3205 3206 3224 C3' C A 191 OK 3222 3225 3226 3244 C3' A A 192 OK 3242 3245 3246 3266 C3' G A 193 OK 3264 3267 3268 3289 C3' G A 194 OK 3287 3290 3291 3312 C3' U A 195 OK 3310 3313 3314 3332 C3' C A 196 OK 3330 3333 3334 3352 C3' G A 197 OK 3350 3353 3354 3375 C3' G A 198 OK 3373 3376 3377 3398 C3' A A 199 OK 3396 3399 3400 3420 C3' A A 200 OK 3418 3421 3422 3442 C3' A A 201 OK 3440 3443 3444 3464 C3' C A 202 OK 3462 3465 3466 3484 C3' G A 203 OK 3482 3485 3486 3507 C3' G A 204 OK 3505 3508 3509 3530 C3' A A 205 OK 3528 3531 3532 3552 C3' G A 206 OK 3550 3553 3554 3575 C3' C A 207 OK 3573 3576 3577 3595 C3' A A 208 OK 3593 3596 3597 3617 C3' G A 209 OK 3615 3618 3619 3640 C3' G A 210 OK 3638 3641 3642 3663 C3' U A 211 OK 3661 3664 3665 3683 C3' C A 212 OK 3681 3684 3685 3703 C3' A A 213 OK 3701 3704 3705 3725 C3' A A 214 OK 3723 3726 3727 3747 C3' A A 215 OK 3745 3748 3749 3769 C3' A A 216 OK 3767 3770 3771 3791 C3' C A 217 OK 3789 3792 3793 3811 C3' U A 218 OK 3809 3812 3813 3831 C3' C A 219 OK 3829 3832 3833 3851 C3' C A 220 OK 3849 3852 3853 3871 C3' C A 221 OK 3869 3872 3873 3891 C3' G A 222 OK 3889 3892 3893 3914 C3' U A 223 OK 3912 3915 3916 3934 C3' G A 224 OK 3932 3935 3936 3957 C3' C A 225 OK 3955 3958 3959 3977 C3' U A 226 OK 3975 3978 3979 3997 C3' G A 227 OK 3995 3998 3999 4020 C3' U A 228 OK 4018 4021 4022 4040 C3' A A 229 OK 4038 4041 4042 4068 C3' GDP C 122 OK 4066 4069 4070 4091 C3' C C 123 OK 4089 4092 4093 4111 C3' G C 124 OK 4109 4112 4113 4134 C3' G C 125 OK 4132 4135 4136 4157 C3' C C 126 OK 4155 4158 4159 4177 C3' A C 127 OK 4175 4178 4179 4199 C3' U C 128 OK 4197 4200 4201 4219 C3' C C 129 OK 4217 4220 4221 4239 C3' A C 130 OK 4237 4240 4241 4261 C3' A C 131 OK 4259 4262 4263 4283 C3' U C 132 OK 4281 4284 4285 4303 C3' A C 133 OK 4301 4304 4305 4325 C3' U C 134 OK 4323 4326 4327 4345 C3' G C 135 OK 4343 4346 4347 4368 C3' G C 136 OK 4366 4369 4370 4391 C3' U C 137 OK 4389 4392 4393 4411 C3' G C 138 OK 4409 4412 4413 4434 C3' A C 139 OK 4432 4435 4436 4456 C3' C C 140 OK 4454 4457 4458 4476 C3' C C 141 OK 4474 4477 4478 4496 C3' U C 142 OK 4494 4497 4498 4516 C3' C C 143 OK 4514 4517 4518 4536 C3' C C 144 OK 4534 4537 4538 4556 C3' C C 145 OK 4554 4557 4558 4576 C3' G C 146 OK 4574 4577 4578 4599 C3' G C 147 OK 4597 4600 4601 4622 C3' G C 148 OK 4620 4623 4624 4645 C3' A C 149 OK 4643 4646 4647 4667 C3' G C 150 OK 4665 4668 4669 4690 C3' C C 151 OK 4688 4691 4692 4710 C3' G C 152 OK 4708 4711 4712 4733 C3' G C 153 OK 4731 4734 4735 4756 C3' G C 154 OK 4754 4757 4758 4779 C3' G C 155 OK 4777 4780 4781 4802 C3' G C 156 OK 4800 4803 4804 4825 C3' A C 157 OK 4823 4826 4827 4847 C3' C C 158 OK 4845 4848 4849 4867 C3' C C 159 OK 4865 4868 4869 4887 C3' A C 160 OK 4885 4888 4889 4909 C3' C C 161 OK 4907 4910 4911 4929 C3' C C 162 OK 4927 4930 4931 4949 C3' A C 163 OK 4947 4950 4951 4971 C3' G C 164 OK 4969 4972 4973 4994 C3' G C 165 OK 4992 4995 4996 5017 C3' U C 166 OK 5015 5018 5019 5037 C3' U C 167 OK 5035 5038 5039 5057 C3' G C 168 OK 5055 5058 5059 5080 C3' C C 169 OK 5078 5081 5082 5100 C3' C C 170 OK 5098 5101 5102 5120 C3' U C 171 OK 5118 5121 5122 5140 C3' A C 172 OK 5138 5141 5142 5162 C3' A C 173 OK 5160 5163 5164 5184 C3' G C 174 OK 5182 5185 5186 5207 C3' G C 175 OK 5205 5208 5209 5230 C3' A C 176 OK 5228 5231 5232 5252 C3' G C 177 OK 5250 5253 5254 5275 C3' G C 178 OK 5273 5276 5277 5298 C3' G C 179 OK 5296 5299 5300 5321 C3' G C 180 OK 5319 5322 5323 5344 C3' U C 181 OK 5342 5345 5346 5364 C3' G C 182 OK 5362 5365 5366 5387 C3' A C 183 OK 5385 5388 5389 5409 C3' A C 184 OK 5407 5410 5411 5431 C3' C C 185 OK 5429 5432 5433 5451 C3' C C 186 OK 5449 5452 5453 5471 C3' G C 187 OK 5469 5472 5473 5494 C3' G C 188 OK 5492 5495 5496 5517 C3' C C 189 OK 5515 5518 5519 5537 C3' C C 190 OK 5535 5538 5539 5557 C3' C C 191 OK 5555 5558 5559 5577 C3' A C 192 OK 5575 5578 5579 5599 C3' G C 193 OK 5597 5600 5601 5622 C3' G C 194 OK 5620 5623 5624 5645 C3' U C 195 OK 5643 5646 5647 5665 C3' C C 196 OK 5663 5666 5667 5685 C3' G C 197 OK 5683 5686 5687 5708 C3' G C 198 OK 5706 5709 5710 5731 C3' A C 199 OK 5729 5732 5733 5753 C3' A C 200 OK 5751 5754 5755 5775 C3' A C 201 OK 5773 5776 5777 5797 C3' C C 202 OK 5795 5798 5799 5817 C3' G C 203 OK 5815 5818 5819 5840 C3' G C 204 OK 5838 5841 5842 5863 C3' A C 205 OK 5861 5864 5865 5885 C3' G C 206 OK 5883 5886 5887 5908 C3' C C 207 OK 5906 5909 5910 5928 C3' A C 208 OK 5926 5929 5930 5950 C3' G C 209 OK 5948 5951 5952 5973 C3' G C 210 OK 5971 5974 5975 5996 C3' U C 211 OK 5994 5997 5998 6016 C3' C C 212 OK 6014 6017 6018 6036 C3' A C 213 OK 6034 6037 6038 6058 C3' A C 214 OK 6056 6059 6060 6080 C3' A C 215 OK 6078 6081 6082 6102 C3' A C 216 OK 6100 6103 6104 6124 C3' C C 217 OK 6122 6125 6126 6144 C3' U C 218 OK 6142 6145 6146 6164 C3' C C 219 OK 6162 6165 6166 6184 C3' C C 220 OK 6182 6185 6186 6204 C3' C C 221 OK 6202 6205 6206 6224 C3' G C 222 OK 6222 6225 6226 6247 C3' U C 223 OK 6245 6248 6249 6267 C3' G C 224 OK 6265 6268 6269 6290 C3' C C 225 OK 6288 6291 6292 6310 C3' U C 226 OK 6308 6311 6312 6330 C3' G C 227 OK 6328 6331 6332 6353 C3' U C 228 OK 6351 6354 6355 6373 C3' A C 229 OK 6371 6374 6375 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 1733 C4' G A 122 OK 1735 1732 1734 1756 C4' C A 123 OK 1758 1755 1757 1776 C4' G A 124 OK 1778 1775 1777 1799 C4' G A 125 OK 1801 1798 1800 1822 C4' C A 126 OK 1824 1821 1823 1842 C4' A A 127 OK 1844 1841 1843 1864 C4' U A 128 OK 1866 1863 1865 1884 C4' C A 129 OK 1886 1883 1885 1904 C4' A A 130 OK 1906 1903 1905 1926 C4' A A 131 OK 1928 1925 1927 1948 C4' U A 132 OK 1950 1947 1949 1968 C4' A A 133 OK 1970 1967 1969 1990 C4' U A 134 OK 1992 1989 1991 2010 C4' G A 135 OK 2012 2009 2011 2033 C4' G A 136 OK 2035 2032 2034 2056 C4' U A 137 OK 2058 2055 2057 2076 C4' G A 138 OK 2078 2075 2077 2099 C4' A A 139 OK 2101 2098 2100 2121 C4' C A 140 OK 2123 2120 2122 2141 C4' C A 141 OK 2143 2140 2142 2161 C4' U A 142 OK 2163 2160 2162 2181 C4' C A 143 OK 2183 2180 2182 2201 C4' C A 144 OK 2203 2200 2202 2221 C4' C A 145 OK 2223 2220 2222 2241 C4' G A 146 OK 2243 2240 2242 2264 C4' G A 147 OK 2266 2263 2265 2287 C4' G A 148 OK 2289 2286 2288 2310 C4' A A 149 OK 2312 2309 2311 2332 C4' G A 150 OK 2334 2331 2333 2355 C4' C A 151 OK 2357 2354 2356 2375 C4' G A 152 OK 2377 2374 2376 2398 C4' G A 153 OK 2400 2397 2399 2421 C4' G A 154 OK 2423 2420 2422 2444 C4' G A 155 OK 2446 2443 2445 2467 C4' G A 156 OK 2469 2466 2468 2490 C4' A A 157 OK 2492 2489 2491 2512 C4' C A 158 OK 2514 2511 2513 2532 C4' C A 159 OK 2534 2531 2533 2552 C4' A A 160 OK 2554 2551 2553 2574 C4' C A 161 OK 2576 2573 2575 2594 C4' C A 162 OK 2596 2593 2595 2614 C4' A A 163 OK 2616 2613 2615 2636 C4' G A 164 OK 2638 2635 2637 2659 C4' G A 165 OK 2661 2658 2660 2682 C4' U A 166 OK 2684 2681 2683 2702 C4' U A 167 OK 2704 2701 2703 2722 C4' G A 168 OK 2724 2721 2723 2745 C4' C A 169 OK 2747 2744 2746 2765 C4' C A 170 OK 2767 2764 2766 2785 C4' U A 171 OK 2787 2784 2786 2805 C4' A A 172 OK 2807 2804 2806 2827 C4' A A 173 OK 2829 2826 2828 2849 C4' G A 174 OK 2851 2848 2850 2872 C4' G A 175 OK 2874 2871 2873 2895 C4' A A 176 OK 2897 2894 2896 2917 C4' G A 177 OK 2919 2916 2918 2940 C4' G A 178 OK 2942 2939 2941 2963 C4' G A 179 OK 2965 2962 2964 2986 C4' G A 180 OK 2988 2985 2987 3009 C4' U A 181 OK 3011 3008 3010 3029 C4' G A 182 OK 3031 3028 3030 3052 C4' A A 183 OK 3054 3051 3053 3074 C4' A A 184 OK 3076 3073 3075 3096 C4' C A 185 OK 3098 3095 3097 3116 C4' C A 186 OK 3118 3115 3117 3136 C4' G A 187 OK 3138 3135 3137 3159 C4' G A 188 OK 3161 3158 3160 3182 C4' C A 189 OK 3184 3181 3183 3202 C4' C A 190 OK 3204 3201 3203 3222 C4' C A 191 OK 3224 3221 3223 3242 C4' A A 192 OK 3244 3241 3243 3264 C4' G A 193 OK 3266 3263 3265 3287 C4' G A 194 OK 3289 3286 3288 3310 C4' U A 195 OK 3312 3309 3311 3330 C4' C A 196 OK 3332 3329 3331 3350 C4' G A 197 OK 3352 3349 3351 3373 C4' G A 198 OK 3375 3372 3374 3396 C4' A A 199 OK 3398 3395 3397 3418 C4' A A 200 OK 3420 3417 3419 3440 C4' A A 201 OK 3442 3439 3441 3462 C4' C A 202 OK 3464 3461 3463 3482 C4' G A 203 OK 3484 3481 3483 3505 C4' G A 204 OK 3507 3504 3506 3528 C4' A A 205 OK 3530 3527 3529 3550 C4' G A 206 OK 3552 3549 3551 3573 C4' C A 207 OK 3575 3572 3574 3593 C4' A A 208 OK 3595 3592 3594 3615 C4' G A 209 OK 3617 3614 3616 3638 C4' G A 210 OK 3640 3637 3639 3661 C4' U A 211 OK 3663 3660 3662 3681 C4' C A 212 OK 3683 3680 3682 3701 C4' A A 213 OK 3703 3700 3702 3723 C4' A A 214 OK 3725 3722 3724 3745 C4' A A 215 OK 3747 3744 3746 3767 C4' A A 216 OK 3769 3766 3768 3789 C4' C A 217 OK 3791 3788 3790 3809 C4' U A 218 OK 3811 3808 3810 3829 C4' C A 219 OK 3831 3828 3830 3849 C4' C A 220 OK 3851 3848 3850 3869 C4' C A 221 OK 3871 3868 3870 3889 C4' G A 222 OK 3891 3888 3890 3912 C4' U A 223 OK 3914 3911 3913 3932 C4' G A 224 OK 3934 3931 3933 3955 C4' C A 225 OK 3957 3954 3956 3975 C4' U A 226 OK 3977 3974 3976 3995 C4' G A 227 OK 3997 3994 3996 4018 C4' U A 228 OK 4020 4017 4019 4038 C4' A A 229 OK 4040 4037 4039 4066 C4' GDP C 122 OK 4068 4065 4067 4089 C4' C C 123 OK 4091 4088 4090 4109 C4' G C 124 OK 4111 4108 4110 4132 C4' G C 125 OK 4134 4131 4133 4155 C4' C C 126 OK 4157 4154 4156 4175 C4' A C 127 OK 4177 4174 4176 4197 C4' U C 128 OK 4199 4196 4198 4217 C4' C C 129 OK 4219 4216 4218 4237 C4' A C 130 OK 4239 4236 4238 4259 C4' A C 131 OK 4261 4258 4260 4281 C4' U C 132 OK 4283 4280 4282 4301 C4' A C 133 OK 4303 4300 4302 4323 C4' U C 134 OK 4325 4322 4324 4343 C4' G C 135 OK 4345 4342 4344 4366 C4' G C 136 OK 4368 4365 4367 4389 C4' U C 137 OK 4391 4388 4390 4409 C4' G C 138 OK 4411 4408 4410 4432 C4' A C 139 OK 4434 4431 4433 4454 C4' C C 140 OK 4456 4453 4455 4474 C4' C C 141 OK 4476 4473 4475 4494 C4' U C 142 OK 4496 4493 4495 4514 C4' C C 143 OK 4516 4513 4515 4534 C4' C C 144 OK 4536 4533 4535 4554 C4' C C 145 OK 4556 4553 4555 4574 C4' G C 146 OK 4576 4573 4575 4597 C4' G C 147 OK 4599 4596 4598 4620 C4' G C 148 OK 4622 4619 4621 4643 C4' A C 149 OK 4645 4642 4644 4665 C4' G C 150 OK 4667 4664 4666 4688 C4' C C 151 OK 4690 4687 4689 4708 C4' G C 152 OK 4710 4707 4709 4731 C4' G C 153 OK 4733 4730 4732 4754 C4' G C 154 OK 4756 4753 4755 4777 C4' G C 155 OK 4779 4776 4778 4800 C4' G C 156 OK 4802 4799 4801 4823 C4' A C 157 OK 4825 4822 4824 4845 C4' C C 158 OK 4847 4844 4846 4865 C4' C C 159 OK 4867 4864 4866 4885 C4' A C 160 OK 4887 4884 4886 4907 C4' C C 161 OK 4909 4906 4908 4927 C4' C C 162 OK 4929 4926 4928 4947 C4' A C 163 OK 4949 4946 4948 4969 C4' G C 164 OK 4971 4968 4970 4992 C4' G C 165 OK 4994 4991 4993 5015 C4' U C 166 OK 5017 5014 5016 5035 C4' U C 167 OK 5037 5034 5036 5055 C4' G C 168 OK 5057 5054 5056 5078 C4' C C 169 OK 5080 5077 5079 5098 C4' C C 170 OK 5100 5097 5099 5118 C4' U C 171 OK 5120 5117 5119 5138 C4' A C 172 OK 5140 5137 5139 5160 C4' A C 173 OK 5162 5159 5161 5182 C4' G C 174 OK 5184 5181 5183 5205 C4' G C 175 OK 5207 5204 5206 5228 C4' A C 176 OK 5230 5227 5229 5250 C4' G C 177 OK 5252 5249 5251 5273 C4' G C 178 OK 5275 5272 5274 5296 C4' G C 179 OK 5298 5295 5297 5319 C4' G C 180 OK 5321 5318 5320 5342 C4' U C 181 OK 5344 5341 5343 5362 C4' G C 182 OK 5364 5361 5363 5385 C4' A C 183 OK 5387 5384 5386 5407 C4' A C 184 OK 5409 5406 5408 5429 C4' C C 185 OK 5431 5428 5430 5449 C4' C C 186 OK 5451 5448 5450 5469 C4' G C 187 OK 5471 5468 5470 5492 C4' G C 188 OK 5494 5491 5493 5515 C4' C C 189 OK 5517 5514 5516 5535 C4' C C 190 OK 5537 5534 5536 5555 C4' C C 191 OK 5557 5554 5556 5575 C4' A C 192 OK 5577 5574 5576 5597 C4' G C 193 OK 5599 5596 5598 5620 C4' G C 194 OK 5622 5619 5621 5643 C4' U C 195 OK 5645 5642 5644 5663 C4' C C 196 OK 5665 5662 5664 5683 C4' G C 197 OK 5685 5682 5684 5706 C4' G C 198 OK 5708 5705 5707 5729 C4' A C 199 OK 5731 5728 5730 5751 C4' A C 200 OK 5753 5750 5752 5773 C4' A C 201 OK 5775 5772 5774 5795 C4' C C 202 OK 5797 5794 5796 5815 C4' G C 203 OK 5817 5814 5816 5838 C4' G C 204 OK 5840 5837 5839 5861 C4' A C 205 OK 5863 5860 5862 5883 C4' G C 206 OK 5885 5882 5884 5906 C4' C C 207 OK 5908 5905 5907 5926 C4' A C 208 OK 5928 5925 5927 5948 C4' G C 209 OK 5950 5947 5949 5971 C4' G C 210 OK 5973 5970 5972 5994 C4' U C 211 OK 5996 5993 5995 6014 C4' C C 212 OK 6016 6013 6015 6034 C4' A C 213 OK 6036 6033 6035 6056 C4' A C 214 OK 6058 6055 6057 6078 C4' A C 215 OK 6080 6077 6079 6100 C4' A C 216 OK 6102 6099 6101 6122 C4' C C 217 OK 6124 6121 6123 6142 C4' U C 218 OK 6144 6141 6143 6162 C4' C C 219 OK 6164 6161 6163 6182 C4' C C 220 OK 6184 6181 6183 6202 C4' C C 221 OK 6204 6201 6203 6222 C4' G C 222 OK 6224 6221 6223 6245 C4' U C 223 OK 6247 6244 6246 6265 C4' G C 224 OK 6267 6264 6266 6288 C4' C C 225 OK 6290 6287 6289 6308 C4' U C 226 OK 6310 6307 6309 6328 C4' G C 227 OK 6330 6327 6329 6351 C4' U C 228 OK 6353 6350 6352 6371 C4' A C 229 OK 6373 6370 6372 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 1732 C5' G A 122 1731 1733 1755 C5' C A 123 1754 1756 1775 C5' G A 124 1774 1776 1798 C5' G A 125 1797 1799 1821 C5' C A 126 1820 1822 1841 C5' A A 127 1840 1842 1863 C5' U A 128 1862 1864 1883 C5' C A 129 1882 1884 1903 C5' A A 130 1902 1904 1925 C5' A A 131 1924 1926 1947 C5' U A 132 1946 1948 1967 C5' A A 133 1966 1968 1989 C5' U A 134 1988 1990 2009 C5' G A 135 2008 2010 2032 C5' G A 136 2031 2033 2055 C5' U A 137 2054 2056 2075 C5' G A 138 2074 2076 2098 C5' A A 139 2097 2099 2120 C5' C A 140 2119 2121 2140 C5' C A 141 2139 2141 2160 C5' U A 142 2159 2161 2180 C5' C A 143 2179 2181 2200 C5' C A 144 2199 2201 2220 C5' C A 145 2219 2221 2240 C5' G A 146 2239 2241 2263 C5' G A 147 2262 2264 2286 C5' G A 148 2285 2287 2309 C5' A A 149 2308 2310 2331 C5' G A 150 2330 2332 2354 C5' C A 151 2353 2355 2374 C5' G A 152 2373 2375 2397 C5' G A 153 2396 2398 2420 C5' G A 154 2419 2421 2443 C5' G A 155 2442 2444 2466 C5' G A 156 2465 2467 2489 C5' A A 157 2488 2490 2511 C5' C A 158 2510 2512 2531 C5' C A 159 2530 2532 2551 C5' A A 160 2550 2552 2573 C5' C A 161 2572 2574 2593 C5' C A 162 2592 2594 2613 C5' A A 163 2612 2614 2635 C5' G A 164 2634 2636 2658 C5' G A 165 2657 2659 2681 C5' U A 166 2680 2682 2701 C5' U A 167 2700 2702 2721 C5' G A 168 2720 2722 2744 C5' C A 169 2743 2745 2764 C5' C A 170 2763 2765 2784 C5' U A 171 2783 2785 2804 C5' A A 172 2803 2805 2826 C5' A A 173 2825 2827 2848 C5' G A 174 2847 2849 2871 C5' G A 175 2870 2872 2894 C5' A A 176 2893 2895 2916 C5' G A 177 2915 2917 2939 C5' G A 178 2938 2940 2962 C5' G A 179 2961 2963 2985 C5' G A 180 2984 2986 3008 C5' U A 181 3007 3009 3028 C5' G A 182 3027 3029 3051 C5' A A 183 3050 3052 3073 C5' A A 184 3072 3074 3095 C5' C A 185 3094 3096 3115 C5' C A 186 3114 3116 3135 C5' G A 187 3134 3136 3158 C5' G A 188 3157 3159 3181 C5' C A 189 3180 3182 3201 C5' C A 190 3200 3202 3221 C5' C A 191 3220 3222 3241 C5' A A 192 3240 3242 3263 C5' G A 193 3262 3264 3286 C5' G A 194 3285 3287 3309 C5' U A 195 3308 3310 3329 C5' C A 196 3328 3330 3349 C5' G A 197 3348 3350 3372 C5' G A 198 3371 3373 3395 C5' A A 199 3394 3396 3417 C5' A A 200 3416 3418 3439 C5' A A 201 3438 3440 3461 C5' C A 202 3460 3462 3481 C5' G A 203 3480 3482 3504 C5' G A 204 3503 3505 3527 C5' A A 205 3526 3528 3549 C5' G A 206 3548 3550 3572 C5' C A 207 3571 3573 3592 C5' A A 208 3591 3593 3614 C5' G A 209 3613 3615 3637 C5' G A 210 3636 3638 3660 C5' U A 211 3659 3661 3680 C5' C A 212 3679 3681 3700 C5' A A 213 3699 3701 3722 C5' A A 214 3721 3723 3744 C5' A A 215 3743 3745 3766 C5' A A 216 3765 3767 3788 C5' C A 217 3787 3789 3808 C5' U A 218 3807 3809 3828 C5' C A 219 3827 3829 3848 C5' C A 220 3847 3849 3868 C5' C A 221 3867 3869 3888 C5' G A 222 3887 3889 3911 C5' U A 223 3910 3912 3931 C5' G A 224 3930 3932 3954 C5' C A 225 3953 3955 3974 C5' U A 226 3973 3975 3994 C5' G A 227 3993 3995 4017 C5' U A 228 4016 4018 4037 C5' A A 229 4036 4038 4065 C5' GDP C 122 4064 4066 4088 C5' C C 123 4087 4089 4108 C5' G C 124 4107 4109 4131 C5' G C 125 4130 4132 4154 C5' C C 126 4153 4155 4174 C5' A C 127 4173 4175 4196 C5' U C 128 4195 4197 4216 C5' C C 129 4215 4217 4236 C5' A C 130 4235 4237 4258 C5' A C 131 4257 4259 4280 C5' U C 132 4279 4281 4300 C5' A C 133 4299 4301 4322 C5' U C 134 4321 4323 4342 C5' G C 135 4341 4343 4365 C5' G C 136 4364 4366 4388 C5' U C 137 4387 4389 4408 C5' G C 138 4407 4409 4431 C5' A C 139 4430 4432 4453 C5' C C 140 4452 4454 4473 C5' C C 141 4472 4474 4493 C5' U C 142 4492 4494 4513 C5' C C 143 4512 4514 4533 C5' C C 144 4532 4534 4553 C5' C C 145 4552 4554 4573 C5' G C 146 4572 4574 4596 C5' G C 147 4595 4597 4619 C5' G C 148 4618 4620 4642 C5' A C 149 4641 4643 4664 C5' G C 150 4663 4665 4687 C5' C C 151 4686 4688 4707 C5' G C 152 4706 4708 4730 C5' G C 153 4729 4731 4753 C5' G C 154 4752 4754 4776 C5' G C 155 4775 4777 4799 C5' G C 156 4798 4800 4822 C5' A C 157 4821 4823 4844 C5' C C 158 4843 4845 4864 C5' C C 159 4863 4865 4884 C5' A C 160 4883 4885 4906 C5' C C 161 4905 4907 4926 C5' C C 162 4925 4927 4946 C5' A C 163 4945 4947 4968 C5' G C 164 4967 4969 4991 C5' G C 165 4990 4992 5014 C5' U C 166 5013 5015 5034 C5' U C 167 5033 5035 5054 C5' G C 168 5053 5055 5077 C5' C C 169 5076 5078 5097 C5' C C 170 5096 5098 5117 C5' U C 171 5116 5118 5137 C5' A C 172 5136 5138 5159 C5' A C 173 5158 5160 5181 C5' G C 174 5180 5182 5204 C5' G C 175 5203 5205 5227 C5' A C 176 5226 5228 5249 C5' G C 177 5248 5250 5272 C5' G C 178 5271 5273 5295 C5' G C 179 5294 5296 5318 C5' G C 180 5317 5319 5341 C5' U C 181 5340 5342 5361 C5' G C 182 5360 5362 5384 C5' A C 183 5383 5385 5406 C5' A C 184 5405 5407 5428 C5' C C 185 5427 5429 5448 C5' C C 186 5447 5449 5468 C5' G C 187 5467 5469 5491 C5' G C 188 5490 5492 5514 C5' C C 189 5513 5515 5534 C5' C C 190 5533 5535 5554 C5' C C 191 5553 5555 5574 C5' A C 192 5573 5575 5596 C5' G C 193 5595 5597 5619 C5' G C 194 5618 5620 5642 C5' U C 195 5641 5643 5662 C5' C C 196 5661 5663 5682 C5' G C 197 5681 5683 5705 C5' G C 198 5704 5706 5728 C5' A C 199 5727 5729 5750 C5' A C 200 5749 5751 5772 C5' A C 201 5771 5773 5794 C5' C C 202 5793 5795 5814 C5' G C 203 5813 5815 5837 C5' G C 204 5836 5838 5860 C5' A C 205 5859 5861 5882 C5' G C 206 5881 5883 5905 C5' C C 207 5904 5906 5925 C5' A C 208 5924 5926 5947 C5' G C 209 5946 5948 5970 C5' G C 210 5969 5971 5993 C5' U C 211 5992 5994 6013 C5' C C 212 6012 6014 6033 C5' A C 213 6032 6034 6055 C5' A C 214 6054 6056 6077 C5' A C 215 6076 6078 6099 C5' A C 216 6098 6100 6121 C5' C C 217 6120 6122 6141 C5' U C 218 6140 6142 6161 C5' C C 219 6160 6162 6181 C5' C C 220 6180 6182 6201 C5' C C 221 6200 6202 6221 C5' G C 222 6220 6222 6244 C5' U C 223 6243 6245 6264 C5' G C 224 6263 6265 6287 C5' C C 225 6286 6288 6307 C5' U C 226 6306 6308 6327 C5' G C 227 6326 6328 6350 C5' U C 228 6349 6351 6370 C5' A C 229 6369 6371 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 1728 P G A 122 distorted distorted 1729 1730 1731 1751 P C A 123 distorted distorted 1736 1752 1753 1754 1771 P G A 124 distorted distorted 1759 1772 1773 1774 1794 P G A 125 distorted distorted 1779 1795 1796 1797 1817 P C A 126 distorted distorted 1802 1818 1819 1820 1837 P A A 127 distorted distorted 1825 1838 1839 1840 1859 P U A 128 distorted distorted 1845 1860 1861 1862 1879 P C A 129 distorted distorted 1867 1880 1881 1882 1899 P A A 130 distorted distorted 1887 1900 1901 1902 1921 P A A 131 distorted distorted 1907 1922 1923 1924 1943 P U A 132 distorted distorted 1929 1944 1945 1946 1963 P A A 133 distorted distorted 1951 1964 1965 1966 1985 P U A 134 distorted distorted 1971 1986 1987 1988 2005 P G A 135 distorted distorted 1993 2006 2007 2008 2028 P G A 136 distorted distorted 2013 2029 2030 2031 2051 P U A 137 distorted distorted 2036 2052 2053 2054 2071 P G A 138 distorted distorted 2059 2072 2073 2074 2094 P A A 139 distorted distorted 2079 2095 2096 2097 2116 P C A 140 distorted distorted 2102 2117 2118 2119 2136 P C A 141 distorted distorted 2124 2137 2138 2139 2156 P U A 142 distorted distorted 2144 2157 2158 2159 2176 P C A 143 distorted distorted 2164 2177 2178 2179 2196 P C A 144 distorted distorted 2184 2197 2198 2199 2216 P C A 145 distorted distorted 2204 2217 2218 2219 2236 P G A 146 distorted distorted 2224 2237 2238 2239 2259 P G A 147 distorted distorted 2244 2260 2261 2262 2282 P G A 148 distorted distorted 2267 2283 2284 2285 2305 P A A 149 distorted distorted 2290 2306 2307 2308 2327 P G A 150 distorted distorted 2313 2328 2329 2330 2350 P C A 151 distorted distorted 2335 2351 2352 2353 2370 P G A 152 distorted distorted 2358 2371 2372 2373 2393 P G A 153 distorted distorted 2378 2394 2395 2396 2416 P G A 154 distorted distorted 2401 2417 2418 2419 2439 P G A 155 distorted distorted 2424 2440 2441 2442 2462 P G A 156 distorted distorted 2447 2463 2464 2465 2485 P A A 157 distorted distorted 2470 2486 2487 2488 2507 P C A 158 distorted distorted 2493 2508 2509 2510 2527 P C A 159 distorted distorted 2515 2528 2529 2530 2547 P A A 160 distorted distorted 2535 2548 2549 2550 2569 P C A 161 distorted distorted 2555 2570 2571 2572 2589 P C A 162 distorted distorted 2577 2590 2591 2592 2609 P A A 163 distorted distorted 2597 2610 2611 2612 2631 P G A 164 distorted distorted 2617 2632 2633 2634 2654 P G A 165 distorted distorted 2639 2655 2656 2657 2677 P U A 166 distorted distorted 2662 2678 2679 2680 2697 P U A 167 distorted distorted 2685 2698 2699 2700 2717 P G A 168 distorted distorted 2705 2718 2719 2720 2740 P C A 169 distorted distorted 2725 2741 2742 2743 2760 P C A 170 distorted distorted 2748 2761 2762 2763 2780 P U A 171 distorted distorted 2768 2781 2782 2783 2800 P A A 172 distorted distorted 2788 2801 2802 2803 2822 P A A 173 distorted distorted 2808 2823 2824 2825 2844 P G A 174 distorted distorted 2830 2845 2846 2847 2867 P G A 175 distorted distorted 2852 2868 2869 2870 2890 P A A 176 distorted distorted 2875 2891 2892 2893 2912 P G A 177 distorted distorted 2898 2913 2914 2915 2935 P G A 178 distorted distorted 2920 2936 2937 2938 2958 P G A 179 distorted distorted 2943 2959 2960 2961 2981 P G A 180 distorted distorted 2966 2982 2983 2984 3004 P U A 181 distorted distorted 2989 3005 3006 3007 3024 P G A 182 distorted distorted 3012 3025 3026 3027 3047 P A A 183 distorted distorted 3032 3048 3049 3050 3069 P A A 184 distorted distorted 3055 3070 3071 3072 3091 P C A 185 distorted distorted 3077 3092 3093 3094 3111 P C A 186 distorted distorted 3099 3112 3113 3114 3131 P G A 187 distorted distorted 3119 3132 3133 3134 3154 P G A 188 distorted distorted 3139 3155 3156 3157 3177 P C A 189 distorted distorted 3162 3178 3179 3180 3197 P C A 190 distorted distorted 3185 3198 3199 3200 3217 P C A 191 distorted distorted 3205 3218 3219 3220 3237 P A A 192 distorted distorted 3225 3238 3239 3240 3259 P G A 193 distorted distorted 3245 3260 3261 3262 3282 P G A 194 distorted distorted 3267 3283 3284 3285 3305 P U A 195 distorted distorted 3290 3306 3307 3308 3325 P C A 196 distorted distorted 3313 3326 3327 3328 3345 P G A 197 distorted distorted 3333 3346 3347 3348 3368 P G A 198 distorted distorted 3353 3369 3370 3371 3391 P A A 199 distorted distorted 3376 3392 3393 3394 3413 P A A 200 distorted distorted 3399 3414 3415 3416 3435 P A A 201 distorted distorted 3421 3436 3437 3438 3457 P C A 202 distorted distorted 3443 3458 3459 3460 3477 P G A 203 distorted distorted 3465 3478 3479 3480 3500 P G A 204 distorted distorted 3485 3501 3502 3503 3523 P A A 205 distorted distorted 3508 3524 3525 3526 3545 P G A 206 distorted distorted 3531 3546 3547 3548 3568 P C A 207 distorted distorted 3553 3569 3570 3571 3588 P A A 208 distorted distorted 3576 3589 3590 3591 3610 P G A 209 distorted distorted 3596 3611 3612 3613 3633 P G A 210 distorted distorted 3618 3634 3635 3636 3656 P U A 211 distorted distorted 3641 3657 3658 3659 3676 P C A 212 distorted distorted 3664 3677 3678 3679 3696 P A A 213 distorted distorted 3684 3697 3698 3699 3718 P A A 214 distorted distorted 3704 3719 3720 3721 3740 P A A 215 distorted distorted 3726 3741 3742 3743 3762 P A A 216 distorted distorted 3748 3763 3764 3765 3784 P C A 217 distorted distorted 3770 3785 3786 3787 3804 P U A 218 distorted distorted 3792 3805 3806 3807 3824 P C A 219 distorted distorted 3812 3825 3826 3827 3844 P C A 220 distorted distorted 3832 3845 3846 3847 3864 P C A 221 distorted distorted 3852 3865 3866 3867 3884 P G A 222 distorted distorted 3872 3885 3886 3887 3907 P U A 223 distorted distorted 3892 3908 3909 3910 3927 P G A 224 distorted distorted 3915 3928 3929 3930 3950 P C A 225 distorted distorted 3935 3951 3952 3953 3970 P U A 226 distorted distorted 3958 3971 3972 3973 3990 P G A 227 distorted distorted 3978 3991 3992 3993 4013 P U A 228 distorted distorted 3998 4014 4015 4016 4033 P A A 229 distorted distorted 4021 4034 4035 4036 4084 P C C 123 distorted distorted 4085 4086 4087 4104 P G C 124 distorted distorted 4092 4105 4106 4107 4127 P G C 125 distorted distorted 4112 4128 4129 4130 4150 P C C 126 distorted distorted 4135 4151 4152 4153 4170 P A C 127 distorted distorted 4158 4171 4172 4173 4192 P U C 128 distorted distorted 4178 4193 4194 4195 4212 P C C 129 distorted distorted 4200 4213 4214 4215 4232 P A C 130 distorted distorted 4220 4233 4234 4235 4254 P A C 131 distorted distorted 4240 4255 4256 4257 4276 P U C 132 distorted distorted 4262 4277 4278 4279 4296 P A C 133 distorted distorted 4284 4297 4298 4299 4318 P U C 134 distorted distorted 4304 4319 4320 4321 4338 P G C 135 distorted distorted 4326 4339 4340 4341 4361 P G C 136 distorted distorted 4346 4362 4363 4364 4384 P U C 137 distorted distorted 4369 4385 4386 4387 4404 P G C 138 distorted distorted 4392 4405 4406 4407 4427 P A C 139 distorted distorted 4412 4428 4429 4430 4449 P C C 140 distorted distorted 4435 4450 4451 4452 4469 P C C 141 distorted distorted 4457 4470 4471 4472 4489 P U C 142 distorted distorted 4477 4490 4491 4492 4509 P C C 143 distorted distorted 4497 4510 4511 4512 4529 P C C 144 distorted distorted 4517 4530 4531 4532 4549 P C C 145 distorted distorted 4537 4550 4551 4552 4569 P G C 146 distorted distorted 4557 4570 4571 4572 4592 P G C 147 distorted distorted 4577 4593 4594 4595 4615 P G C 148 distorted distorted 4600 4616 4617 4618 4638 P A C 149 distorted distorted 4623 4639 4640 4641 4660 P G C 150 distorted distorted 4646 4661 4662 4663 4683 P C C 151 distorted distorted 4668 4684 4685 4686 4703 P G C 152 distorted distorted 4691 4704 4705 4706 4726 P G C 153 distorted distorted 4711 4727 4728 4729 4749 P G C 154 distorted distorted 4734 4750 4751 4752 4772 P G C 155 distorted distorted 4757 4773 4774 4775 4795 P G C 156 distorted distorted 4780 4796 4797 4798 4818 P A C 157 distorted distorted 4803 4819 4820 4821 4840 P C C 158 distorted distorted 4826 4841 4842 4843 4860 P C C 159 distorted distorted 4848 4861 4862 4863 4880 P A C 160 distorted distorted 4868 4881 4882 4883 4902 P C C 161 distorted distorted 4888 4903 4904 4905 4922 P C C 162 distorted distorted 4910 4923 4924 4925 4942 P A C 163 distorted distorted 4930 4943 4944 4945 4964 P G C 164 distorted distorted 4950 4965 4966 4967 4987 P G C 165 distorted distorted 4972 4988 4989 4990 5010 P U C 166 distorted distorted 4995 5011 5012 5013 5030 P U C 167 distorted distorted 5018 5031 5032 5033 5050 P G C 168 distorted distorted 5038 5051 5052 5053 5073 P C C 169 distorted distorted 5058 5074 5075 5076 5093 P C C 170 distorted distorted 5081 5094 5095 5096 5113 P U C 171 distorted distorted 5101 5114 5115 5116 5133 P A C 172 distorted distorted 5121 5134 5135 5136 5155 P A C 173 distorted distorted 5141 5156 5157 5158 5177 P G C 174 distorted distorted 5163 5178 5179 5180 5200 P G C 175 distorted distorted 5185 5201 5202 5203 5223 P A C 176 distorted distorted 5208 5224 5225 5226 5245 P G C 177 distorted distorted 5231 5246 5247 5248 5268 P G C 178 distorted distorted 5253 5269 5270 5271 5291 P G C 179 distorted distorted 5276 5292 5293 5294 5314 P G C 180 distorted distorted 5299 5315 5316 5317 5337 P U C 181 distorted distorted 5322 5338 5339 5340 5357 P G C 182 distorted distorted 5345 5358 5359 5360 5380 P A C 183 distorted distorted 5365 5381 5382 5383 5402 P A C 184 distorted distorted 5388 5403 5404 5405 5424 P C C 185 distorted distorted 5410 5425 5426 5427 5444 P C C 186 distorted distorted 5432 5445 5446 5447 5464 P G C 187 distorted distorted 5452 5465 5466 5467 5487 P G C 188 distorted distorted 5472 5488 5489 5490 5510 P C C 189 distorted distorted 5495 5511 5512 5513 5530 P C C 190 distorted distorted 5518 5531 5532 5533 5550 P C C 191 distorted distorted 5538 5551 5552 5553 5570 P A C 192 distorted distorted 5558 5571 5572 5573 5592 P G C 193 distorted distorted 5578 5593 5594 5595 5615 P G C 194 distorted distorted 5600 5616 5617 5618 5638 P U C 195 distorted distorted 5623 5639 5640 5641 5658 P C C 196 distorted distorted 5646 5659 5660 5661 5678 P G C 197 distorted distorted 5666 5679 5680 5681 5701 P G C 198 distorted distorted 5686 5702 5703 5704 5724 P A C 199 distorted distorted 5709 5725 5726 5727 5746 P A C 200 distorted distorted 5732 5747 5748 5749 5768 P A C 201 distorted distorted 5754 5769 5770 5771 5790 P C C 202 distorted distorted 5776 5791 5792 5793 5810 P G C 203 distorted distorted 5798 5811 5812 5813 5833 P G C 204 distorted distorted 5818 5834 5835 5836 5856 P A C 205 distorted distorted 5841 5857 5858 5859 5878 P G C 206 distorted distorted 5864 5879 5880 5881 5901 P C C 207 distorted distorted 5886 5902 5903 5904 5921 P A C 208 distorted distorted 5909 5922 5923 5924 5943 P G C 209 distorted distorted 5929 5944 5945 5946 5966 P G C 210 distorted distorted 5951 5967 5968 5969 5989 P U C 211 distorted distorted 5974 5990 5991 5992 6009 P C C 212 distorted distorted 5997 6010 6011 6012 6029 P A C 213 distorted distorted 6017 6030 6031 6032 6051 P A C 214 distorted distorted 6037 6052 6053 6054 6073 P A C 215 distorted distorted 6059 6074 6075 6076 6095 P A C 216 distorted distorted 6081 6096 6097 6098 6117 P C C 217 distorted distorted 6103 6118 6119 6120 6137 P U C 218 distorted distorted 6125 6138 6139 6140 6157 P C C 219 distorted distorted 6145 6158 6159 6160 6177 P C C 220 distorted distorted 6165 6178 6179 6180 6197 P C C 221 distorted distorted 6185 6198 6199 6200 6217 P G C 222 distorted distorted 6205 6218 6219 6220 6240 P U C 223 distorted distorted 6225 6241 6242 6243 6260 P G C 224 distorted distorted 6248 6261 6262 6263 6283 P C C 225 distorted distorted 6268 6284 6285 6286 6303 P U C 226 distorted distorted 6291 6304 6305 6306 6323 P G C 227 distorted distorted 6311 6324 6325 6326 6346 P U C 228 distorted distorted 6331 6347 6348 6349 6366 P A C 229 distorted distorted 6354 6367 6368 6369 ---------------------------------------------------------------------------------