ID code: '3IRW' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 756 C1' GTP R 8 beta 751 757 754 779 C1' G R 9 beta 774 780 777 802 C1' U R 10 beta 797 803 800 822 C1' C R 11 beta 817 823 820 842 C1' A R 12 beta 837 843 840 864 C1' C R 13 beta 859 865 862 884 C1' G R 14 beta 879 885 882 907 C1' C R 15 beta 902 908 905 927 C1' A R 16 beta 922 928 925 949 C1' C R 17 beta 944 950 947 969 C1' A R 18 beta 964 970 967 991 C1' G R 19 beta 986 992 989 1014 C1' G R 20 beta 1009 1015 1012 1037 C1' G R 21 beta 1032 1038 1035 1060 C1' C R 22 beta 1055 1061 1058 1080 C1' A R 23 beta 1075 1081 1078 1102 C1' A R 24 beta 1097 1103 1100 1124 C1' A R 25 beta 1119 1125 1122 1146 C1' C R 26 beta 1141 1147 1144 1166 C1' C R 27 beta 1161 1167 1164 1186 C1' A R 28 beta 1181 1187 1184 1208 C1' U R 29 beta 1203 1209 1206 1228 C1' U R 30 beta 1223 1229 1226 1248 C1' C R 31 beta 1243 1249 1246 1268 C1' G R 32 beta 1263 1269 1266 1291 C1' A R 33 beta 1286 1292 1289 1313 C1' A R 34 beta 1308 1314 1311 1335 C1' A R 35 beta 1330 1336 1333 1357 C1' G R 36 beta 1352 1358 1355 1380 C1' A R 37 beta 1375 1381 1378 1402 C1' G R 38 beta 1397 1403 1400 1425 C1' U R 39 beta 1420 1426 1423 1445 C1' G R 40 beta 1440 1446 1443 1468 C1' G R 41 beta 1463 1469 1466 1491 C1' G R 42 beta 1486 1492 1489 1514 C1' A R 43 beta 1509 1515 1512 1536 C1' C R 44 beta 1531 1537 1534 1556 C1' G R 45 beta 1551 1557 1554 1579 C1' C R 46 beta 1574 1580 1577 1599 C1' A R 47 beta 1594 1600 1597 1621 C1' A R 48 beta 1616 1622 1619 1643 C1' A R 49 beta 1638 1644 1641 1665 C1' G R 50 beta 1660 1666 1663 1688 C1' C R 51 beta 1683 1689 1686 1708 C1' C R 52 beta 1703 1709 1706 1728 C1' U R 53 beta 1723 1729 1726 1748 C1' C R 54 beta 1743 1749 1746 1768 C1' C R 55 beta 1763 1769 1766 1788 C1' G R 56 beta 1783 1789 1786 1811 C1' G R 57 beta 1806 1812 1809 1834 C1' C R 58 beta 1829 1835 1832 1854 C1' C R 59 beta 1849 1855 1852 1874 C1' U R 60 beta 1869 1875 1872 1894 C1' A R 61 beta 1889 1895 1892 1916 C1' A R 62 beta 1911 1917 1914 1938 C1' A R 63 beta 1933 1939 1936 1960 C1' C R 64 beta 1955 1961 1958 1980 C1' C R 65 beta 1975 1981 1978 2000 C1' A R 660 beta 1995 2001 1998 2022 C1' U R 661 beta 2017 2023 2020 2042 C1' U R 662 beta 2037 2043 2040 2062 C1' G R 663 beta 2057 2063 2060 2085 C1' C R 664 beta 2080 2086 2083 2105 C1' A R 665 beta 2100 2106 2103 2127 C1' C R 666 beta 2122 2128 2125 2147 C1' U R 667 beta 2142 2148 2145 2167 C1' C R 668 beta 2162 2168 2165 2187 C1' C R 669 beta 2182 2188 2185 2207 C1' G R 75 beta 2202 2208 2205 2230 C1' G R 76 beta 2225 2231 2228 2253 C1' U R 77 beta 2248 2254 2251 2273 C1' A R 78 beta 2268 2274 2271 2295 C1' G R 79 beta 2290 2296 2293 2318 C1' G R 80 beta 2313 2319 2316 2341 C1' U R 81 beta 2336 2342 2339 2361 C1' A R 82 beta 2356 2362 2359 2383 C1' G R 83 beta 2378 2384 2381 2406 C1' C R 84 beta 2401 2407 2404 2426 C1' G R 85 beta 2421 2427 2424 2449 C1' G R 86 beta 2444 2450 2447 2472 C1' G R 87 beta 2467 2473 2470 2495 C1' G R 88 beta 2490 2496 2493 2518 C1' U R 89 beta 2513 2519 2516 2538 C1' U R 90 beta 2533 2539 2536 2558 C1' A R 91 beta 2553 2559 2556 2580 C1' C R 92 beta 2575 2581 2578 2600 C1' C R 93 beta 2595 2601 2598 2620 C1' G R 94 beta 2615 2621 2618 2643 C1' A R 95 beta 2638 2644 2641 2665 C1' U R 96 beta 2660 2666 2663 2685 C1' G R 97 beta 2680 2686 2683 2709 C1' C2E R 1 beta 2704 2710 2707 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 754 C2' GTP R 8 OK 756 752 755 777 C2' G R 9 OK 779 775 778 800 C2' U R 10 OK 802 798 801 820 C2' C R 11 OK 822 818 821 840 C2' A R 12 OK 842 838 841 862 C2' C R 13 OK 864 860 863 882 C2' G R 14 OK 884 880 883 905 C2' C R 15 OK 907 903 906 925 C2' A R 16 OK 927 923 926 947 C2' C R 17 OK 949 945 948 967 C2' A R 18 OK 969 965 968 989 C2' G R 19 OK 991 987 990 1012 C2' G R 20 OK 1014 1010 1013 1035 C2' G R 21 OK 1037 1033 1036 1058 C2' C R 22 OK 1060 1056 1059 1078 C2' A R 23 OK 1080 1076 1079 1100 C2' A R 24 OK 1102 1098 1101 1122 C2' A R 25 OK 1124 1120 1123 1144 C2' C R 26 OK 1146 1142 1145 1164 C2' C R 27 OK 1166 1162 1165 1184 C2' A R 28 OK 1186 1182 1185 1206 C2' U R 29 OK 1208 1204 1207 1226 C2' U R 30 OK 1228 1224 1227 1246 C2' C R 31 OK 1248 1244 1247 1266 C2' G R 32 OK 1268 1264 1267 1289 C2' A R 33 OK 1291 1287 1290 1311 C2' A R 34 OK 1313 1309 1312 1333 C2' A R 35 OK 1335 1331 1334 1355 C2' G R 36 OK 1357 1353 1356 1378 C2' A R 37 OK 1380 1376 1379 1400 C2' G R 38 OK 1402 1398 1401 1423 C2' U R 39 OK 1425 1421 1424 1443 C2' G R 40 OK 1445 1441 1444 1466 C2' G R 41 OK 1468 1464 1467 1489 C2' G R 42 OK 1491 1487 1490 1512 C2' A R 43 OK 1514 1510 1513 1534 C2' C R 44 OK 1536 1532 1535 1554 C2' G R 45 OK 1556 1552 1555 1577 C2' C R 46 OK 1579 1575 1578 1597 C2' A R 47 OK 1599 1595 1598 1619 C2' A R 48 OK 1621 1617 1620 1641 C2' A R 49 OK 1643 1639 1642 1663 C2' G R 50 OK 1665 1661 1664 1686 C2' C R 51 OK 1688 1684 1687 1706 C2' C R 52 OK 1708 1704 1707 1726 C2' U R 53 OK 1728 1724 1727 1746 C2' C R 54 OK 1748 1744 1747 1766 C2' C R 55 OK 1768 1764 1767 1786 C2' G R 56 OK 1788 1784 1787 1809 C2' G R 57 OK 1811 1807 1810 1832 C2' C R 58 OK 1834 1830 1833 1852 C2' C R 59 OK 1854 1850 1853 1872 C2' U R 60 OK 1874 1870 1873 1892 C2' A R 61 OK 1894 1890 1893 1914 C2' A R 62 OK 1916 1912 1915 1936 C2' A R 63 OK 1938 1934 1937 1958 C2' C R 64 OK 1960 1956 1959 1978 C2' C R 65 OK 1980 1976 1979 1998 C2' A R 660 OK 2000 1996 1999 2020 C2' U R 661 OK 2022 2018 2021 2040 C2' U R 662 OK 2042 2038 2041 2060 C2' G R 663 OK 2062 2058 2061 2083 C2' C R 664 OK 2085 2081 2084 2103 C2' A R 665 OK 2105 2101 2104 2125 C2' C R 666 OK 2127 2123 2126 2145 C2' U R 667 OK 2147 2143 2146 2165 C2' C R 668 OK 2167 2163 2166 2185 C2' C R 669 OK 2187 2183 2186 2205 C2' G R 75 OK 2207 2203 2206 2228 C2' G R 76 OK 2230 2226 2229 2251 C2' U R 77 OK 2253 2249 2252 2271 C2' A R 78 OK 2273 2269 2272 2293 C2' G R 79 OK 2295 2291 2294 2316 C2' G R 80 OK 2318 2314 2317 2339 C2' U R 81 OK 2341 2337 2340 2359 C2' A R 82 OK 2361 2357 2360 2381 C2' G R 83 OK 2383 2379 2382 2404 C2' C R 84 OK 2406 2402 2405 2424 C2' G R 85 OK 2426 2422 2425 2447 C2' G R 86 OK 2449 2445 2448 2470 C2' G R 87 OK 2472 2468 2471 2493 C2' G R 88 OK 2495 2491 2494 2516 C2' U R 89 OK 2518 2514 2517 2536 C2' U R 90 OK 2538 2534 2537 2556 C2' A R 91 OK 2558 2554 2557 2578 C2' C R 92 OK 2580 2576 2579 2598 C2' C R 93 OK 2600 2596 2599 2618 C2' G R 94 OK 2620 2616 2619 2641 C2' A R 95 OK 2643 2639 2642 2663 C2' U R 96 OK 2665 2661 2664 2683 C2' G R 97 OK 2685 2681 2684 2707 C2' C2E R 1 OK 2709 2705 2708 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 752 C3' GTP R 8 OK 750 753 754 775 C3' G R 9 OK 773 776 777 798 C3' U R 10 OK 796 799 800 818 C3' C R 11 OK 816 819 820 838 C3' A R 12 OK 836 839 840 860 C3' C R 13 OK 858 861 862 880 C3' G R 14 OK 878 881 882 903 C3' C R 15 OK 901 904 905 923 C3' A R 16 OK 921 924 925 945 C3' C R 17 OK 943 946 947 965 C3' A R 18 OK 963 966 967 987 C3' G R 19 OK 985 988 989 1010 C3' G R 20 OK 1008 1011 1012 1033 C3' G R 21 OK 1031 1034 1035 1056 C3' C R 22 OK 1054 1057 1058 1076 C3' A R 23 OK 1074 1077 1078 1098 C3' A R 24 OK 1096 1099 1100 1120 C3' A R 25 OK 1118 1121 1122 1142 C3' C R 26 OK 1140 1143 1144 1162 C3' C R 27 OK 1160 1163 1164 1182 C3' A R 28 OK 1180 1183 1184 1204 C3' U R 29 OK 1202 1205 1206 1224 C3' U R 30 OK 1222 1225 1226 1244 C3' C R 31 OK 1242 1245 1246 1264 C3' G R 32 OK 1262 1265 1266 1287 C3' A R 33 OK 1285 1288 1289 1309 C3' A R 34 OK 1307 1310 1311 1331 C3' A R 35 OK 1329 1332 1333 1353 C3' G R 36 OK 1351 1354 1355 1376 C3' A R 37 OK 1374 1377 1378 1398 C3' G R 38 OK 1396 1399 1400 1421 C3' U R 39 OK 1419 1422 1423 1441 C3' G R 40 OK 1439 1442 1443 1464 C3' G R 41 OK 1462 1465 1466 1487 C3' G R 42 OK 1485 1488 1489 1510 C3' A R 43 OK 1508 1511 1512 1532 C3' C R 44 OK 1530 1533 1534 1552 C3' G R 45 OK 1550 1553 1554 1575 C3' C R 46 OK 1573 1576 1577 1595 C3' A R 47 OK 1593 1596 1597 1617 C3' A R 48 OK 1615 1618 1619 1639 C3' A R 49 OK 1637 1640 1641 1661 C3' G R 50 OK 1659 1662 1663 1684 C3' C R 51 OK 1682 1685 1686 1704 C3' C R 52 OK 1702 1705 1706 1724 C3' U R 53 OK 1722 1725 1726 1744 C3' C R 54 OK 1742 1745 1746 1764 C3' C R 55 OK 1762 1765 1766 1784 C3' G R 56 OK 1782 1785 1786 1807 C3' G R 57 OK 1805 1808 1809 1830 C3' C R 58 OK 1828 1831 1832 1850 C3' C R 59 OK 1848 1851 1852 1870 C3' U R 60 OK 1868 1871 1872 1890 C3' A R 61 OK 1888 1891 1892 1912 C3' A R 62 OK 1910 1913 1914 1934 C3' A R 63 OK 1932 1935 1936 1956 C3' C R 64 OK 1954 1957 1958 1976 C3' C R 65 OK 1974 1977 1978 1996 C3' A R 660 OK 1994 1997 1998 2018 C3' U R 661 OK 2016 2019 2020 2038 C3' U R 662 OK 2036 2039 2040 2058 C3' G R 663 OK 2056 2059 2060 2081 C3' C R 664 OK 2079 2082 2083 2101 C3' A R 665 OK 2099 2102 2103 2123 C3' C R 666 OK 2121 2124 2125 2143 C3' U R 667 OK 2141 2144 2145 2163 C3' C R 668 OK 2161 2164 2165 2183 C3' C R 669 OK 2181 2184 2185 2203 C3' G R 75 OK 2201 2204 2205 2226 C3' G R 76 OK 2224 2227 2228 2249 C3' U R 77 OK 2247 2250 2251 2269 C3' A R 78 OK 2267 2270 2271 2291 C3' G R 79 OK 2289 2292 2293 2314 C3' G R 80 OK 2312 2315 2316 2337 C3' U R 81 OK 2335 2338 2339 2357 C3' A R 82 OK 2355 2358 2359 2379 C3' G R 83 OK 2377 2380 2381 2402 C3' C R 84 OK 2400 2403 2404 2422 C3' G R 85 OK 2420 2423 2424 2445 C3' G R 86 OK 2443 2446 2447 2468 C3' G R 87 OK 2466 2469 2470 2491 C3' G R 88 OK 2489 2492 2493 2514 C3' U R 89 OK 2512 2515 2516 2534 C3' U R 90 OK 2532 2535 2536 2554 C3' A R 91 OK 2552 2555 2556 2576 C3' C R 92 OK 2574 2577 2578 2596 C3' C R 93 OK 2594 2597 2598 2616 C3' G R 94 OK 2614 2617 2618 2639 C3' A R 95 OK 2637 2640 2641 2661 C3' U R 96 OK 2659 2662 2663 2681 C3' G R 97 OK 2679 2682 2683 2705 C3' C2E R 1 OK 2703 2706 2707 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 750 C4' GTP R 8 OK 752 749 751 773 C4' G R 9 OK 775 772 774 796 C4' U R 10 OK 798 795 797 816 C4' C R 11 OK 818 815 817 836 C4' A R 12 OK 838 835 837 858 C4' C R 13 OK 860 857 859 878 C4' G R 14 OK 880 877 879 901 C4' C R 15 OK 903 900 902 921 C4' A R 16 OK 923 920 922 943 C4' C R 17 OK 945 942 944 963 C4' A R 18 OK 965 962 964 985 C4' G R 19 OK 987 984 986 1008 C4' G R 20 OK 1010 1007 1009 1031 C4' G R 21 OK 1033 1030 1032 1054 C4' C R 22 OK 1056 1053 1055 1074 C4' A R 23 OK 1076 1073 1075 1096 C4' A R 24 OK 1098 1095 1097 1118 C4' A R 25 OK 1120 1117 1119 1140 C4' C R 26 OK 1142 1139 1141 1160 C4' C R 27 OK 1162 1159 1161 1180 C4' A R 28 OK 1182 1179 1181 1202 C4' U R 29 OK 1204 1201 1203 1222 C4' U R 30 OK 1224 1221 1223 1242 C4' C R 31 OK 1244 1241 1243 1262 C4' G R 32 OK 1264 1261 1263 1285 C4' A R 33 OK 1287 1284 1286 1307 C4' A R 34 OK 1309 1306 1308 1329 C4' A R 35 OK 1331 1328 1330 1351 C4' G R 36 OK 1353 1350 1352 1374 C4' A R 37 OK 1376 1373 1375 1396 C4' G R 38 OK 1398 1395 1397 1419 C4' U R 39 OK 1421 1418 1420 1439 C4' G R 40 OK 1441 1438 1440 1462 C4' G R 41 OK 1464 1461 1463 1485 C4' G R 42 OK 1487 1484 1486 1508 C4' A R 43 OK 1510 1507 1509 1530 C4' C R 44 OK 1532 1529 1531 1550 C4' G R 45 OK 1552 1549 1551 1573 C4' C R 46 OK 1575 1572 1574 1593 C4' A R 47 OK 1595 1592 1594 1615 C4' A R 48 OK 1617 1614 1616 1637 C4' A R 49 OK 1639 1636 1638 1659 C4' G R 50 OK 1661 1658 1660 1682 C4' C R 51 OK 1684 1681 1683 1702 C4' C R 52 OK 1704 1701 1703 1722 C4' U R 53 OK 1724 1721 1723 1742 C4' C R 54 OK 1744 1741 1743 1762 C4' C R 55 OK 1764 1761 1763 1782 C4' G R 56 OK 1784 1781 1783 1805 C4' G R 57 OK 1807 1804 1806 1828 C4' C R 58 OK 1830 1827 1829 1848 C4' C R 59 OK 1850 1847 1849 1868 C4' U R 60 OK 1870 1867 1869 1888 C4' A R 61 OK 1890 1887 1889 1910 C4' A R 62 OK 1912 1909 1911 1932 C4' A R 63 OK 1934 1931 1933 1954 C4' C R 64 OK 1956 1953 1955 1974 C4' C R 65 OK 1976 1973 1975 1994 C4' A R 660 OK 1996 1993 1995 2016 C4' U R 661 OK 2018 2015 2017 2036 C4' U R 662 OK 2038 2035 2037 2056 C4' G R 663 OK 2058 2055 2057 2079 C4' C R 664 OK 2081 2078 2080 2099 C4' A R 665 OK 2101 2098 2100 2121 C4' C R 666 OK 2123 2120 2122 2141 C4' U R 667 OK 2143 2140 2142 2161 C4' C R 668 OK 2163 2160 2162 2181 C4' C R 669 OK 2183 2180 2182 2201 C4' G R 75 OK 2203 2200 2202 2224 C4' G R 76 OK 2226 2223 2225 2247 C4' U R 77 OK 2249 2246 2248 2267 C4' A R 78 OK 2269 2266 2268 2289 C4' G R 79 OK 2291 2288 2290 2312 C4' G R 80 OK 2314 2311 2313 2335 C4' U R 81 OK 2337 2334 2336 2355 C4' A R 82 OK 2357 2354 2356 2377 C4' G R 83 OK 2379 2376 2378 2400 C4' C R 84 OK 2402 2399 2401 2420 C4' G R 85 OK 2422 2419 2421 2443 C4' G R 86 OK 2445 2442 2444 2466 C4' G R 87 OK 2468 2465 2467 2489 C4' G R 88 OK 2491 2488 2490 2512 C4' U R 89 OK 2514 2511 2513 2532 C4' U R 90 OK 2534 2531 2533 2552 C4' A R 91 OK 2554 2551 2553 2574 C4' C R 92 OK 2576 2573 2575 2594 C4' C R 93 OK 2596 2593 2595 2614 C4' G R 94 OK 2616 2613 2615 2637 C4' A R 95 OK 2639 2636 2638 2659 C4' U R 96 OK 2661 2658 2660 2679 C4' G R 97 OK 2681 2678 2680 2703 C4' C2E R 1 OK 2705 2702 2704 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 749 C5' GTP R 8 748 750 772 C5' G R 9 771 773 795 C5' U R 10 794 796 815 C5' C R 11 814 816 835 C5' A R 12 834 836 857 C5' C R 13 856 858 877 C5' G R 14 876 878 900 C5' C R 15 899 901 920 C5' A R 16 919 921 942 C5' C R 17 941 943 962 C5' A R 18 961 963 984 C5' G R 19 983 985 1007 C5' G R 20 1006 1008 1030 C5' G R 21 1029 1031 1053 C5' C R 22 1052 1054 1073 C5' A R 23 1072 1074 1095 C5' A R 24 1094 1096 1117 C5' A R 25 1116 1118 1139 C5' C R 26 1138 1140 1159 C5' C R 27 1158 1160 1179 C5' A R 28 1178 1180 1201 C5' U R 29 1200 1202 1221 C5' U R 30 1220 1222 1241 C5' C R 31 1240 1242 1261 C5' G R 32 1260 1262 1284 C5' A R 33 1283 1285 1306 C5' A R 34 1305 1307 1328 C5' A R 35 1327 1329 1350 C5' G R 36 1349 1351 1373 C5' A R 37 1372 1374 1395 C5' G R 38 1394 1396 1418 C5' U R 39 1417 1419 1438 C5' G R 40 1437 1439 1461 C5' G R 41 1460 1462 1484 C5' G R 42 1483 1485 1507 C5' A R 43 1506 1508 1529 C5' C R 44 1528 1530 1549 C5' G R 45 1548 1550 1572 C5' C R 46 1571 1573 1592 C5' A R 47 1591 1593 1614 C5' A R 48 1613 1615 1636 C5' A R 49 1635 1637 1658 C5' G R 50 1657 1659 1681 C5' C R 51 1680 1682 1701 C5' C R 52 1700 1702 1721 C5' U R 53 1720 1722 1741 C5' C R 54 1740 1742 1761 C5' C R 55 1760 1762 1781 C5' G R 56 1780 1782 1804 C5' G R 57 1803 1805 1827 C5' C R 58 1826 1828 1847 C5' C R 59 1846 1848 1867 C5' U R 60 1866 1868 1887 C5' A R 61 1886 1888 1909 C5' A R 62 1908 1910 1931 C5' A R 63 1930 1932 1953 C5' C R 64 1952 1954 1973 C5' C R 65 1972 1974 1993 C5' A R 660 1992 1994 2015 C5' U R 661 2014 2016 2035 C5' U R 662 2034 2036 2055 C5' G R 663 2054 2056 2078 C5' C R 664 2077 2079 2098 C5' A R 665 2097 2099 2120 C5' C R 666 2119 2121 2140 C5' U R 667 2139 2141 2160 C5' C R 668 2159 2161 2180 C5' C R 669 2179 2181 2200 C5' G R 75 2199 2201 2223 C5' G R 76 2222 2224 2246 C5' U R 77 2245 2247 2266 C5' A R 78 2265 2267 2288 C5' G R 79 2287 2289 2311 C5' G R 80 2310 2312 2334 C5' U R 81 2333 2335 2354 C5' A R 82 2353 2355 2376 C5' G R 83 2375 2377 2399 C5' C R 84 2398 2400 2419 C5' G R 85 2418 2420 2442 C5' G R 86 2441 2443 2465 C5' G R 87 2464 2466 2488 C5' G R 88 2487 2489 2511 C5' U R 89 2510 2512 2531 C5' U R 90 2530 2532 2551 C5' A R 91 2550 2552 2573 C5' C R 92 2572 2574 2593 C5' C R 93 2592 2594 2613 C5' G R 94 2612 2614 2636 C5' A R 95 2635 2637 2658 C5' U R 96 2657 2659 2678 C5' G R 97 2677 2679 2702 C5' C2E R 1 2701 2703 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 768 P G R 9 distorted distorted 753 769 770 771 791 P U R 10 distorted distorted 776 792 793 794 811 P C R 11 distorted distorted 799 812 813 814 831 P A R 12 distorted distorted 819 832 833 834 853 P C R 13 distorted distorted 839 854 855 856 873 P G R 14 distorted distorted 861 874 875 876 896 P C R 15 distorted distorted 881 897 898 899 916 P A R 16 distorted distorted 904 917 918 919 938 P C R 17 distorted distorted 924 939 940 941 958 P A R 18 distorted distorted 946 959 960 961 980 P G R 19 distorted distorted 966 981 982 983 1003 P G R 20 distorted distorted 988 1004 1005 1006 1026 P G R 21 distorted distorted 1011 1027 1028 1029 1049 P C R 22 distorted distorted 1034 1050 1051 1052 1069 P A R 23 distorted distorted 1057 1070 1071 1072 1091 P A R 24 distorted distorted 1077 1092 1093 1094 1113 P A R 25 distorted distorted 1099 1114 1115 1116 1135 P C R 26 distorted distorted 1121 1136 1137 1138 1155 P C R 27 distorted distorted 1143 1156 1157 1158 1175 P A R 28 distorted distorted 1163 1176 1177 1178 1197 P U R 29 distorted distorted 1183 1198 1199 1200 1217 P U R 30 distorted distorted 1205 1218 1219 1220 1237 P C R 31 distorted distorted 1225 1238 1239 1240 1257 P G R 32 distorted distorted 1245 1258 1259 1260 1280 P A R 33 distorted distorted 1265 1281 1282 1283 1302 P A R 34 distorted distorted 1288 1303 1304 1305 1324 P A R 35 distorted distorted 1310 1325 1326 1327 1346 P G R 36 distorted distorted 1332 1347 1348 1349 1369 P A R 37 distorted distorted 1354 1370 1371 1372 1391 P G R 38 distorted distorted 1377 1392 1393 1394 1414 P U R 39 distorted distorted 1399 1415 1416 1417 1434 P G R 40 distorted distorted 1422 1435 1436 1437 1457 P G R 41 distorted distorted 1442 1458 1459 1460 1480 P G R 42 distorted distorted 1465 1481 1482 1483 1503 P A R 43 distorted distorted 1488 1504 1505 1506 1525 P C R 44 distorted distorted 1511 1526 1527 1528 1545 P G R 45 distorted distorted 1533 1546 1547 1548 1568 P C R 46 distorted distorted 1553 1569 1570 1571 1588 P A R 47 distorted distorted 1576 1589 1590 1591 1610 P A R 48 distorted distorted 1596 1611 1612 1613 1632 P A R 49 distorted distorted 1618 1633 1634 1635 1654 P G R 50 distorted distorted 1640 1655 1656 1657 1677 P C R 51 distorted distorted 1662 1678 1679 1680 1697 P C R 52 distorted distorted 1685 1698 1699 1700 1717 P U R 53 distorted distorted 1705 1718 1719 1720 1737 P C R 54 distorted distorted 1725 1738 1739 1740 1757 P C R 55 distorted distorted 1745 1758 1759 1760 1777 P G R 56 distorted distorted 1765 1778 1779 1780 1800 P G R 57 distorted distorted 1785 1801 1802 1803 1823 P C R 58 distorted distorted 1808 1824 1825 1826 1843 P C R 59 distorted distorted 1831 1844 1845 1846 1863 P U R 60 distorted distorted 1851 1864 1865 1866 1883 P A R 61 distorted distorted 1871 1884 1885 1886 1905 P A R 62 distorted distorted 1891 1906 1907 1908 1927 P A R 63 distorted distorted 1913 1928 1929 1930 1949 P C R 64 distorted distorted 1935 1950 1951 1952 1969 P C R 65 distorted distorted 1957 1970 1971 1972 1989 P A R 660 distorted distorted 1977 1990 1991 1992 2011 P U R 661 distorted distorted 1997 2012 2013 2014 2031 P U R 662 distorted distorted 2019 2032 2033 2034 2051 P G R 663 distorted distorted 2039 2052 2053 2054 2074 P C R 664 distorted distorted 2059 2075 2076 2077 2094 P A R 665 distorted distorted 2082 2095 2096 2097 2116 P C R 666 distorted distorted 2102 2117 2118 2119 2136 P U R 667 distorted distorted 2124 2137 2138 2139 2156 P C R 668 distorted distorted 2144 2157 2158 2159 2176 P C R 669 distorted distorted 2164 2177 2178 2179 2196 P G R 75 distorted distorted 2184 2197 2198 2199 2219 P G R 76 distorted distorted 2204 2220 2221 2222 2242 P U R 77 distorted distorted 2227 2243 2244 2245 2262 P A R 78 distorted distorted 2250 2263 2264 2265 2284 P G R 79 distorted distorted 2270 2285 2286 2287 2307 P G R 80 distorted distorted 2292 2308 2309 2310 2330 P U R 81 distorted distorted 2315 2331 2332 2333 2350 P A R 82 distorted distorted 2338 2351 2352 2353 2372 P G R 83 distorted distorted 2358 2373 2374 2375 2395 P C R 84 distorted distorted 2380 2396 2397 2398 2415 P G R 85 distorted distorted 2403 2416 2417 2418 2438 P G R 86 distorted distorted 2423 2439 2440 2441 2461 P G R 87 distorted distorted 2446 2462 2463 2464 2484 P G R 88 distorted distorted 2469 2485 2486 2487 2507 P U R 89 distorted distorted 2492 2508 2509 2510 2527 P U R 90 distorted distorted 2515 2528 2529 2530 2547 P A R 91 distorted distorted 2535 2548 2549 2550 2569 P C R 92 distorted distorted 2555 2570 2571 2572 2589 P C R 93 distorted distorted 2577 2590 2591 2592 2609 P G R 94 distorted distorted 2597 2610 2611 2612 2632 P A R 95 distorted distorted 2617 2633 2634 2635 2654 P U R 96 distorted distorted 2640 2655 2656 2657 2674 P G R 97 distorted distorted 2662 2675 2676 2677 ---------------------------------------------------------------------------------