ID code: '3F4G' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 9 C1' G X 1 beta 4 10 7 32 C1' G X 2 beta 27 33 30 55 C1' A X 3 beta 50 56 53 77 C1' U X 4 beta 72 78 75 97 C1' C X 5 beta 92 98 95 117 C1' U X 6 beta 112 118 115 137 C1' U X 7 beta 132 138 135 157 C1' C X 8 beta 152 158 155 177 C1' G X 9 beta 172 178 175 200 C1' G X 10 beta 195 201 198 223 C1' G X 11 beta 218 224 221 246 C1' G X 12 beta 241 247 244 269 C1' C X 13 beta 264 270 267 289 C1' A X 14 beta 284 290 287 311 C1' G X 15 beta 306 312 309 334 C1' G X 16 beta 329 335 332 357 C1' G X 17 beta 352 358 355 380 C1' U X 18 beta 375 381 378 400 C1' G X 19 beta 395 401 398 423 C1' A X 20 beta 418 424 421 445 C1' A X 21 beta 440 446 443 467 C1' A X 22 beta 462 468 465 489 C1' U X 23 beta 484 490 487 509 C1' U X 24 beta 504 510 507 529 C1' C X 25 beta 524 530 527 549 C1' C X 26 beta 544 550 547 569 C1' C X 27 beta 564 570 567 589 C1' G X 28 beta 584 590 587 612 C1' A X 29 beta 607 613 610 634 C1' C X 30 beta 629 635 632 654 C1' C X 31 beta 649 655 652 674 C1' G X 32 beta 669 675 672 697 C1' G X 33 beta 692 698 695 720 C1' U X 34 beta 715 721 718 740 C1' G X 35 beta 735 741 738 763 C1' G X 36 beta 758 764 761 786 C1' U X 37 beta 781 787 784 806 C1' A X 38 beta 801 807 804 828 C1' U X 39 beta 823 829 826 848 C1' A X 40 beta 843 849 846 870 C1' G X 41 beta 865 871 868 893 C1' U X 42 beta 888 894 891 913 C1' C X 43 beta 908 914 911 933 C1' C X 44 beta 928 934 931 953 C1' A X 45 beta 948 954 951 975 C1' C X 46 beta 970 976 973 995 C1' G X 47 beta 990 996 993 1018 C1' A X 48 beta 1013 1019 1016 1040 C1' A X 49 beta 1035 1041 1038 1062 C1' A X 50 beta 1057 1063 1060 1084 C1' G X 51 beta 1079 1085 1082 1107 C1' C X 52 beta 1102 1108 1105 1127 C1' U X 53 beta 1122 1128 1125 1152 C1' G Y 57 beta 1147 1153 1150 1175 C1' C Y 58 beta 1170 1176 1173 1195 C1' U Y 59 beta 1190 1196 1193 1215 C1' U Y 60 beta 1210 1216 1213 1235 C1' U Y 61 beta 1230 1236 1233 1255 C1' G Y 62 beta 1250 1256 1253 1278 C1' A Y 63 beta 1273 1279 1276 1300 C1' U Y 64 beta 1295 1301 1298 1320 C1' U Y 65 beta 1315 1321 1318 1340 C1' U Y 66 beta 1335 1341 1338 1360 C1' G Y 67 beta 1355 1361 1358 1383 C1' G Y 68 beta 1378 1384 1381 1406 C1' U Y 69 beta 1401 1407 1404 1426 C1' G Y 70 beta 1421 1427 1424 1449 C1' A Y 71 beta 1444 1450 1447 1471 C1' A Y 72 beta 1466 1472 1469 1493 C1' A Y 73 beta 1488 1494 1491 1515 C1' U Y 74 beta 1510 1516 1513 1535 C1' U Y 75 beta 1530 1536 1533 1555 C1' C Y 76 beta 1550 1556 1553 1575 C1' C Y 77 beta 1570 1576 1573 1595 C1' A Y 78 beta 1590 1596 1593 1617 C1' A Y 79 beta 1612 1618 1615 1639 C1' A Y 80 beta 1634 1640 1637 1661 C1' A Y 81 beta 1656 1662 1659 1683 C1' C Y 82 beta 1678 1684 1681 1703 C1' C Y 83 beta 1698 1704 1701 1723 C1' G Y 84 beta 1718 1724 1721 1746 C1' A Y 85 beta 1741 1747 1744 1768 C1' C Y 86 beta 1763 1769 1766 1788 C1' A Y 87 beta 1783 1789 1786 1810 C1' G Y 88 beta 1805 1811 1808 1833 C1' U Y 89 beta 1828 1834 1831 1853 C1' A Y 90 beta 1848 1854 1851 1875 C1' G Y 91 beta 1870 1876 1873 1898 C1' A Y 92 beta 1893 1899 1896 1920 C1' G Y 93 beta 1915 1921 1918 1943 C1' U Y 94 beta 1938 1944 1941 1963 C1' C Y 95 beta 1958 1964 1961 1983 C1' U Y 96 beta 1978 1984 1981 2003 C1' G Y 97 beta 1998 2004 2001 2026 C1' G Y 98 beta 2021 2027 2024 2049 C1' A Y 99 beta 2044 2050 2047 2071 C1' U Y 100 beta 2066 2072 2069 2091 C1' G Y 101 beta 2086 2092 2089 2114 C1' A Y 102 beta 2109 2115 2112 2136 C1' G Y 103 beta 2131 2137 2134 2159 C1' A Y 104 beta 2154 2160 2157 2181 C1' G Y 105 beta 2176 2182 2179 2204 C1' A Y 106 beta 2199 2205 2202 2226 C1' A Y 107 beta 2221 2227 2224 2248 C1' G Y 108 beta 2243 2249 2246 2271 C1' A Y 109 beta 2266 2272 2269 2293 C1' U Y 110 beta 2288 2294 2291 2313 C1' U Y 111 beta 2308 2314 2311 2333 C1' C Y 112 beta 2328 2334 2331 2371 C1' RBF Y 200 2372 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 7 C2' G X 1 OK 9 5 8 30 C2' G X 2 OK 32 28 31 53 C2' A X 3 OK 55 51 54 75 C2' U X 4 OK 77 73 76 95 C2' C X 5 OK 97 93 96 115 C2' U X 6 OK 117 113 116 135 C2' U X 7 OK 137 133 136 155 C2' C X 8 OK 157 153 156 175 C2' G X 9 OK 177 173 176 198 C2' G X 10 OK 200 196 199 221 C2' G X 11 OK 223 219 222 244 C2' G X 12 OK 246 242 245 267 C2' C X 13 OK 269 265 268 287 C2' A X 14 OK 289 285 288 309 C2' G X 15 OK 311 307 310 332 C2' G X 16 OK 334 330 333 355 C2' G X 17 OK 357 353 356 378 C2' U X 18 OK 380 376 379 398 C2' G X 19 OK 400 396 399 421 C2' A X 20 OK 423 419 422 443 C2' A X 21 OK 445 441 444 465 C2' A X 22 OK 467 463 466 487 C2' U X 23 OK 489 485 488 507 C2' U X 24 OK 509 505 508 527 C2' C X 25 OK 529 525 528 547 C2' C X 26 OK 549 545 548 567 C2' C X 27 OK 569 565 568 587 C2' G X 28 OK 589 585 588 610 C2' A X 29 OK 612 608 611 632 C2' C X 30 OK 634 630 633 652 C2' C X 31 OK 654 650 653 672 C2' G X 32 OK 674 670 673 695 C2' G X 33 OK 697 693 696 718 C2' U X 34 OK 720 716 719 738 C2' G X 35 OK 740 736 739 761 C2' G X 36 OK 763 759 762 784 C2' U X 37 OK 786 782 785 804 C2' A X 38 OK 806 802 805 826 C2' U X 39 OK 828 824 827 846 C2' A X 40 OK 848 844 847 868 C2' G X 41 OK 870 866 869 891 C2' U X 42 OK 893 889 892 911 C2' C X 43 OK 913 909 912 931 C2' C X 44 OK 933 929 932 951 C2' A X 45 OK 953 949 952 973 C2' C X 46 OK 975 971 974 993 C2' G X 47 OK 995 991 994 1016 C2' A X 48 OK 1018 1014 1017 1038 C2' A X 49 OK 1040 1036 1039 1060 C2' A X 50 OK 1062 1058 1061 1082 C2' G X 51 OK 1084 1080 1083 1105 C2' C X 52 OK 1107 1103 1106 1125 C2' U X 53 OK 1127 1123 1126 1150 C2' G Y 57 OK 1152 1148 1151 1173 C2' C Y 58 OK 1175 1171 1174 1193 C2' U Y 59 OK 1195 1191 1194 1213 C2' U Y 60 OK 1215 1211 1214 1233 C2' U Y 61 OK 1235 1231 1234 1253 C2' G Y 62 OK 1255 1251 1254 1276 C2' A Y 63 OK 1278 1274 1277 1298 C2' U Y 64 OK 1300 1296 1299 1318 C2' U Y 65 OK 1320 1316 1319 1338 C2' U Y 66 OK 1340 1336 1339 1358 C2' G Y 67 OK 1360 1356 1359 1381 C2' G Y 68 OK 1383 1379 1382 1404 C2' U Y 69 OK 1406 1402 1405 1424 C2' G Y 70 OK 1426 1422 1425 1447 C2' A Y 71 OK 1449 1445 1448 1469 C2' A Y 72 OK 1471 1467 1470 1491 C2' A Y 73 OK 1493 1489 1492 1513 C2' U Y 74 OK 1515 1511 1514 1533 C2' U Y 75 OK 1535 1531 1534 1553 C2' C Y 76 OK 1555 1551 1554 1573 C2' C Y 77 OK 1575 1571 1574 1593 C2' A Y 78 OK 1595 1591 1594 1615 C2' A Y 79 OK 1617 1613 1616 1637 C2' A Y 80 OK 1639 1635 1638 1659 C2' A Y 81 OK 1661 1657 1660 1681 C2' C Y 82 OK 1683 1679 1682 1701 C2' C Y 83 OK 1703 1699 1702 1721 C2' G Y 84 OK 1723 1719 1722 1744 C2' A Y 85 OK 1746 1742 1745 1766 C2' C Y 86 OK 1768 1764 1767 1786 C2' A Y 87 OK 1788 1784 1787 1808 C2' G Y 88 OK 1810 1806 1809 1831 C2' U Y 89 OK 1833 1829 1832 1851 C2' A Y 90 OK 1853 1849 1852 1873 C2' G Y 91 OK 1875 1871 1874 1896 C2' A Y 92 OK 1898 1894 1897 1918 C2' G Y 93 OK 1920 1916 1919 1941 C2' U Y 94 OK 1943 1939 1942 1961 C2' C Y 95 OK 1963 1959 1962 1981 C2' U Y 96 OK 1983 1979 1982 2001 C2' G Y 97 OK 2003 1999 2002 2024 C2' G Y 98 OK 2026 2022 2025 2047 C2' A Y 99 OK 2049 2045 2048 2069 C2' U Y 100 OK 2071 2067 2070 2089 C2' G Y 101 OK 2091 2087 2090 2112 C2' A Y 102 OK 2114 2110 2113 2134 C2' G Y 103 OK 2136 2132 2135 2157 C2' A Y 104 OK 2159 2155 2158 2179 C2' G Y 105 OK 2181 2177 2180 2202 C2' A Y 106 OK 2204 2200 2203 2224 C2' A Y 107 OK 2226 2222 2225 2246 C2' G Y 108 OK 2248 2244 2247 2269 C2' A Y 109 OK 2271 2267 2270 2291 C2' U Y 110 OK 2293 2289 2292 2311 C2' U Y 111 OK 2313 2309 2312 2331 C2' C Y 112 OK 2333 2329 2332 2372 C2' RBF Y 200 OK 2371 2374 2373 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 5 C3' G X 1 OK 3 6 7 28 C3' G X 2 OK 26 29 30 51 C3' A X 3 OK 49 52 53 73 C3' U X 4 OK 71 74 75 93 C3' C X 5 OK 91 94 95 113 C3' U X 6 OK 111 114 115 133 C3' U X 7 OK 131 134 135 153 C3' C X 8 OK 151 154 155 173 C3' G X 9 OK 171 174 175 196 C3' G X 10 OK 194 197 198 219 C3' G X 11 OK 217 220 221 242 C3' G X 12 OK 240 243 244 265 C3' C X 13 OK 263 266 267 285 C3' A X 14 OK 283 286 287 307 C3' G X 15 OK 305 308 309 330 C3' G X 16 OK 328 331 332 353 C3' G X 17 OK 351 354 355 376 C3' U X 18 OK 374 377 378 396 C3' G X 19 OK 394 397 398 419 C3' A X 20 OK 417 420 421 441 C3' A X 21 OK 439 442 443 463 C3' A X 22 OK 461 464 465 485 C3' U X 23 OK 483 486 487 505 C3' U X 24 OK 503 506 507 525 C3' C X 25 OK 523 526 527 545 C3' C X 26 OK 543 546 547 565 C3' C X 27 OK 563 566 567 585 C3' G X 28 OK 583 586 587 608 C3' A X 29 OK 606 609 610 630 C3' C X 30 OK 628 631 632 650 C3' C X 31 OK 648 651 652 670 C3' G X 32 OK 668 671 672 693 C3' G X 33 OK 691 694 695 716 C3' U X 34 OK 714 717 718 736 C3' G X 35 OK 734 737 738 759 C3' G X 36 OK 757 760 761 782 C3' U X 37 OK 780 783 784 802 C3' A X 38 OK 800 803 804 824 C3' U X 39 OK 822 825 826 844 C3' A X 40 OK 842 845 846 866 C3' G X 41 OK 864 867 868 889 C3' U X 42 OK 887 890 891 909 C3' C X 43 OK 907 910 911 929 C3' C X 44 OK 927 930 931 949 C3' A X 45 OK 947 950 951 971 C3' C X 46 OK 969 972 973 991 C3' G X 47 OK 989 992 993 1014 C3' A X 48 OK 1012 1015 1016 1036 C3' A X 49 OK 1034 1037 1038 1058 C3' A X 50 OK 1056 1059 1060 1080 C3' G X 51 OK 1078 1081 1082 1103 C3' C X 52 OK 1101 1104 1105 1123 C3' U X 53 OK 1121 1124 1125 1148 C3' G Y 57 OK 1146 1149 1150 1171 C3' C Y 58 OK 1169 1172 1173 1191 C3' U Y 59 OK 1189 1192 1193 1211 C3' U Y 60 OK 1209 1212 1213 1231 C3' U Y 61 OK 1229 1232 1233 1251 C3' G Y 62 OK 1249 1252 1253 1274 C3' A Y 63 OK 1272 1275 1276 1296 C3' U Y 64 OK 1294 1297 1298 1316 C3' U Y 65 OK 1314 1317 1318 1336 C3' U Y 66 OK 1334 1337 1338 1356 C3' G Y 67 OK 1354 1357 1358 1379 C3' G Y 68 OK 1377 1380 1381 1402 C3' U Y 69 OK 1400 1403 1404 1422 C3' G Y 70 OK 1420 1423 1424 1445 C3' A Y 71 OK 1443 1446 1447 1467 C3' A Y 72 OK 1465 1468 1469 1489 C3' A Y 73 OK 1487 1490 1491 1511 C3' U Y 74 OK 1509 1512 1513 1531 C3' U Y 75 OK 1529 1532 1533 1551 C3' C Y 76 OK 1549 1552 1553 1571 C3' C Y 77 OK 1569 1572 1573 1591 C3' A Y 78 OK 1589 1592 1593 1613 C3' A Y 79 OK 1611 1614 1615 1635 C3' A Y 80 OK 1633 1636 1637 1657 C3' A Y 81 OK 1655 1658 1659 1679 C3' C Y 82 OK 1677 1680 1681 1699 C3' C Y 83 OK 1697 1700 1701 1719 C3' G Y 84 OK 1717 1720 1721 1742 C3' A Y 85 OK 1740 1743 1744 1764 C3' C Y 86 OK 1762 1765 1766 1784 C3' A Y 87 OK 1782 1785 1786 1806 C3' G Y 88 OK 1804 1807 1808 1829 C3' U Y 89 OK 1827 1830 1831 1849 C3' A Y 90 OK 1847 1850 1851 1871 C3' G Y 91 OK 1869 1872 1873 1894 C3' A Y 92 OK 1892 1895 1896 1916 C3' G Y 93 OK 1914 1917 1918 1939 C3' U Y 94 OK 1937 1940 1941 1959 C3' C Y 95 OK 1957 1960 1961 1979 C3' U Y 96 OK 1977 1980 1981 1999 C3' G Y 97 OK 1997 2000 2001 2022 C3' G Y 98 OK 2020 2023 2024 2045 C3' A Y 99 OK 2043 2046 2047 2067 C3' U Y 100 OK 2065 2068 2069 2087 C3' G Y 101 OK 2085 2088 2089 2110 C3' A Y 102 OK 2108 2111 2112 2132 C3' G Y 103 OK 2130 2133 2134 2155 C3' A Y 104 OK 2153 2156 2157 2177 C3' G Y 105 OK 2175 2178 2179 2200 C3' A Y 106 OK 2198 2201 2202 2222 C3' A Y 107 OK 2220 2223 2224 2244 C3' G Y 108 OK 2242 2245 2246 2267 C3' A Y 109 OK 2265 2268 2269 2289 C3' U Y 110 OK 2287 2290 2291 2309 C3' U Y 111 OK 2307 2310 2311 2329 C3' C Y 112 OK 2327 2330 2331 2374 C3' RBF Y 200 OK 2376 2375 2372 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 3 C4' G X 1 OK 5 2 4 26 C4' G X 2 OK 28 25 27 49 C4' A X 3 OK 51 48 50 71 C4' U X 4 OK 73 70 72 91 C4' C X 5 OK 93 90 92 111 C4' U X 6 OK 113 110 112 131 C4' U X 7 OK 133 130 132 151 C4' C X 8 OK 153 150 152 171 C4' G X 9 OK 173 170 172 194 C4' G X 10 OK 196 193 195 217 C4' G X 11 OK 219 216 218 240 C4' G X 12 OK 242 239 241 263 C4' C X 13 OK 265 262 264 283 C4' A X 14 OK 285 282 284 305 C4' G X 15 OK 307 304 306 328 C4' G X 16 OK 330 327 329 351 C4' G X 17 OK 353 350 352 374 C4' U X 18 OK 376 373 375 394 C4' G X 19 OK 396 393 395 417 C4' A X 20 OK 419 416 418 439 C4' A X 21 OK 441 438 440 461 C4' A X 22 OK 463 460 462 483 C4' U X 23 OK 485 482 484 503 C4' U X 24 OK 505 502 504 523 C4' C X 25 OK 525 522 524 543 C4' C X 26 OK 545 542 544 563 C4' C X 27 OK 565 562 564 583 C4' G X 28 OK 585 582 584 606 C4' A X 29 OK 608 605 607 628 C4' C X 30 OK 630 627 629 648 C4' C X 31 OK 650 647 649 668 C4' G X 32 OK 670 667 669 691 C4' G X 33 OK 693 690 692 714 C4' U X 34 OK 716 713 715 734 C4' G X 35 OK 736 733 735 757 C4' G X 36 OK 759 756 758 780 C4' U X 37 OK 782 779 781 800 C4' A X 38 OK 802 799 801 822 C4' U X 39 OK 824 821 823 842 C4' A X 40 OK 844 841 843 864 C4' G X 41 OK 866 863 865 887 C4' U X 42 OK 889 886 888 907 C4' C X 43 OK 909 906 908 927 C4' C X 44 OK 929 926 928 947 C4' A X 45 OK 949 946 948 969 C4' C X 46 OK 971 968 970 989 C4' G X 47 OK 991 988 990 1012 C4' A X 48 OK 1014 1011 1013 1034 C4' A X 49 OK 1036 1033 1035 1056 C4' A X 50 OK 1058 1055 1057 1078 C4' G X 51 OK 1080 1077 1079 1101 C4' C X 52 OK 1103 1100 1102 1121 C4' U X 53 OK 1123 1120 1122 1146 C4' G Y 57 OK 1148 1145 1147 1169 C4' C Y 58 OK 1171 1168 1170 1189 C4' U Y 59 OK 1191 1188 1190 1209 C4' U Y 60 OK 1211 1208 1210 1229 C4' U Y 61 OK 1231 1228 1230 1249 C4' G Y 62 OK 1251 1248 1250 1272 C4' A Y 63 OK 1274 1271 1273 1294 C4' U Y 64 OK 1296 1293 1295 1314 C4' U Y 65 OK 1316 1313 1315 1334 C4' U Y 66 OK 1336 1333 1335 1354 C4' G Y 67 OK 1356 1353 1355 1377 C4' G Y 68 OK 1379 1376 1378 1400 C4' U Y 69 OK 1402 1399 1401 1420 C4' G Y 70 OK 1422 1419 1421 1443 C4' A Y 71 OK 1445 1442 1444 1465 C4' A Y 72 OK 1467 1464 1466 1487 C4' A Y 73 OK 1489 1486 1488 1509 C4' U Y 74 OK 1511 1508 1510 1529 C4' U Y 75 OK 1531 1528 1530 1549 C4' C Y 76 OK 1551 1548 1550 1569 C4' C Y 77 OK 1571 1568 1570 1589 C4' A Y 78 OK 1591 1588 1590 1611 C4' A Y 79 OK 1613 1610 1612 1633 C4' A Y 80 OK 1635 1632 1634 1655 C4' A Y 81 OK 1657 1654 1656 1677 C4' C Y 82 OK 1679 1676 1678 1697 C4' C Y 83 OK 1699 1696 1698 1717 C4' G Y 84 OK 1719 1716 1718 1740 C4' A Y 85 OK 1742 1739 1741 1762 C4' C Y 86 OK 1764 1761 1763 1782 C4' A Y 87 OK 1784 1781 1783 1804 C4' G Y 88 OK 1806 1803 1805 1827 C4' U Y 89 OK 1829 1826 1828 1847 C4' A Y 90 OK 1849 1846 1848 1869 C4' G Y 91 OK 1871 1868 1870 1892 C4' A Y 92 OK 1894 1891 1893 1914 C4' G Y 93 OK 1916 1913 1915 1937 C4' U Y 94 OK 1939 1936 1938 1957 C4' C Y 95 OK 1959 1956 1958 1977 C4' U Y 96 OK 1979 1976 1978 1997 C4' G Y 97 OK 1999 1996 1998 2020 C4' G Y 98 OK 2022 2019 2021 2043 C4' A Y 99 OK 2045 2042 2044 2065 C4' U Y 100 OK 2067 2064 2066 2085 C4' G Y 101 OK 2087 2084 2086 2108 C4' A Y 102 OK 2110 2107 2109 2130 C4' G Y 103 OK 2132 2129 2131 2153 C4' A Y 104 OK 2155 2152 2154 2175 C4' G Y 105 OK 2177 2174 2176 2198 C4' A Y 106 OK 2200 2197 2199 2220 C4' A Y 107 OK 2222 2219 2221 2242 C4' G Y 108 OK 2244 2241 2243 2265 C4' A Y 109 OK 2267 2264 2266 2287 C4' U Y 110 OK 2289 2286 2288 2307 C4' U Y 111 OK 2309 2306 2308 2327 C4' C Y 112 OK 2329 2326 2328 2376 C4' RBF Y 200 OK 2374 2378 2377 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 2 C5' G X 1 1 3 25 C5' G X 2 24 26 48 C5' A X 3 47 49 70 C5' U X 4 69 71 90 C5' C X 5 89 91 110 C5' U X 6 109 111 130 C5' U X 7 129 131 150 C5' C X 8 149 151 170 C5' G X 9 169 171 193 C5' G X 10 192 194 216 C5' G X 11 215 217 239 C5' G X 12 238 240 262 C5' C X 13 261 263 282 C5' A X 14 281 283 304 C5' G X 15 303 305 327 C5' G X 16 326 328 350 C5' G X 17 349 351 373 C5' U X 18 372 374 393 C5' G X 19 392 394 416 C5' A X 20 415 417 438 C5' A X 21 437 439 460 C5' A X 22 459 461 482 C5' U X 23 481 483 502 C5' U X 24 501 503 522 C5' C X 25 521 523 542 C5' C X 26 541 543 562 C5' C X 27 561 563 582 C5' G X 28 581 583 605 C5' A X 29 604 606 627 C5' C X 30 626 628 647 C5' C X 31 646 648 667 C5' G X 32 666 668 690 C5' G X 33 689 691 713 C5' U X 34 712 714 733 C5' G X 35 732 734 756 C5' G X 36 755 757 779 C5' U X 37 778 780 799 C5' A X 38 798 800 821 C5' U X 39 820 822 841 C5' A X 40 840 842 863 C5' G X 41 862 864 886 C5' U X 42 885 887 906 C5' C X 43 905 907 926 C5' C X 44 925 927 946 C5' A X 45 945 947 968 C5' C X 46 967 969 988 C5' G X 47 987 989 1011 C5' A X 48 1010 1012 1033 C5' A X 49 1032 1034 1055 C5' A X 50 1054 1056 1077 C5' G X 51 1076 1078 1100 C5' C X 52 1099 1101 1120 C5' U X 53 1119 1121 1145 C5' G Y 57 1144 1146 1168 C5' C Y 58 1167 1169 1188 C5' U Y 59 1187 1189 1208 C5' U Y 60 1207 1209 1228 C5' U Y 61 1227 1229 1248 C5' G Y 62 1247 1249 1271 C5' A Y 63 1270 1272 1293 C5' U Y 64 1292 1294 1313 C5' U Y 65 1312 1314 1333 C5' U Y 66 1332 1334 1353 C5' G Y 67 1352 1354 1376 C5' G Y 68 1375 1377 1399 C5' U Y 69 1398 1400 1419 C5' G Y 70 1418 1420 1442 C5' A Y 71 1441 1443 1464 C5' A Y 72 1463 1465 1486 C5' A Y 73 1485 1487 1508 C5' U Y 74 1507 1509 1528 C5' U Y 75 1527 1529 1548 C5' C Y 76 1547 1549 1568 C5' C Y 77 1567 1569 1588 C5' A Y 78 1587 1589 1610 C5' A Y 79 1609 1611 1632 C5' A Y 80 1631 1633 1654 C5' A Y 81 1653 1655 1676 C5' C Y 82 1675 1677 1696 C5' C Y 83 1695 1697 1716 C5' G Y 84 1715 1717 1739 C5' A Y 85 1738 1740 1761 C5' C Y 86 1760 1762 1781 C5' A Y 87 1780 1782 1803 C5' G Y 88 1802 1804 1826 C5' U Y 89 1825 1827 1846 C5' A Y 90 1845 1847 1868 C5' G Y 91 1867 1869 1891 C5' A Y 92 1890 1892 1913 C5' G Y 93 1912 1914 1936 C5' U Y 94 1935 1937 1956 C5' C Y 95 1955 1957 1976 C5' U Y 96 1975 1977 1996 C5' G Y 97 1995 1997 2019 C5' G Y 98 2018 2020 2042 C5' A Y 99 2041 2043 2064 C5' U Y 100 2063 2065 2084 C5' G Y 101 2083 2085 2107 C5' A Y 102 2106 2108 2129 C5' G Y 103 2128 2130 2152 C5' A Y 104 2151 2153 2174 C5' G Y 105 2173 2175 2197 C5' A Y 106 2196 2198 2219 C5' A Y 107 2218 2220 2241 C5' G Y 108 2240 2242 2264 C5' A Y 109 2263 2265 2286 C5' U Y 110 2285 2287 2306 C5' U Y 111 2305 2307 2326 C5' C Y 112 2325 2327 2378 C5' RBF Y 200 2379 2376 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 21 P G X 2 distorted distorted 6 22 23 24 44 P A X 3 distorted distorted 29 45 46 47 66 P U X 4 distorted distorted 52 67 68 69 86 P C X 5 distorted distorted 74 87 88 89 106 P U X 6 distorted distorted 94 107 108 109 126 P U X 7 distorted distorted 114 127 128 129 146 P C X 8 distorted distorted 134 147 148 149 166 P G X 9 distorted distorted 154 167 168 169 189 P G X 10 distorted distorted 174 190 191 192 212 P G X 11 distorted distorted 197 213 214 215 235 P G X 12 distorted distorted 220 236 237 238 258 P C X 13 distorted distorted 243 259 260 261 278 P A X 14 distorted distorted 266 279 280 281 300 P G X 15 distorted distorted 286 301 302 303 323 P G X 16 distorted distorted 308 324 325 326 346 P G X 17 distorted distorted 331 347 348 349 369 P U X 18 distorted distorted 354 370 371 372 389 P G X 19 distorted distorted 377 390 391 392 412 P A X 20 distorted distorted 397 413 414 415 434 P A X 21 distorted distorted 420 435 436 437 456 P A X 22 distorted distorted 442 457 458 459 478 P U X 23 distorted distorted 464 479 480 481 498 P U X 24 distorted distorted 486 499 500 501 518 P C X 25 distorted distorted 506 519 520 521 538 P C X 26 distorted distorted 526 539 540 541 558 P C X 27 distorted distorted 546 559 560 561 578 P G X 28 distorted distorted 566 579 580 581 601 P A X 29 distorted distorted 586 602 603 604 623 P C X 30 distorted distorted 609 624 625 626 643 P C X 31 distorted distorted 631 644 645 646 663 P G X 32 distorted distorted 651 664 665 666 686 P G X 33 distorted distorted 671 687 688 689 709 P U X 34 distorted distorted 694 710 711 712 729 P G X 35 distorted distorted 717 730 731 732 752 P G X 36 distorted distorted 737 753 754 755 775 P U X 37 distorted distorted 760 776 777 778 795 P A X 38 distorted distorted 783 796 797 798 817 P U X 39 distorted distorted 803 818 819 820 837 P A X 40 distorted distorted 825 838 839 840 859 P G X 41 distorted distorted 845 860 861 862 882 P U X 42 distorted distorted 867 883 884 885 902 P C X 43 distorted distorted 890 903 904 905 922 P C X 44 distorted distorted 910 923 924 925 942 P A X 45 distorted distorted 930 943 944 945 964 P C X 46 distorted distorted 950 965 966 967 984 P G X 47 distorted distorted 972 985 986 987 1007 P A X 48 distorted distorted 992 1008 1009 1010 1029 P A X 49 distorted distorted 1015 1030 1031 1032 1051 P A X 50 distorted distorted 1037 1052 1053 1054 1073 P G X 51 distorted distorted 1059 1074 1075 1076 1096 P C X 52 distorted distorted 1081 1097 1098 1099 1116 P U X 53 distorted distorted 1104 1117 1118 1119 1136 P U X 54 distorted distorted 1124 1137 1138 1139 1141 P G Y 57 distorted distorted 1142 1143 1144 1164 P C Y 58 distorted distorted 1149 1165 1166 1167 1184 P U Y 59 distorted distorted 1172 1185 1186 1187 1204 P U Y 60 distorted distorted 1192 1205 1206 1207 1224 P U Y 61 distorted distorted 1212 1225 1226 1227 1244 P G Y 62 distorted distorted 1232 1245 1246 1247 1267 P A Y 63 distorted distorted 1252 1268 1269 1270 1289 P U Y 64 distorted distorted 1275 1290 1291 1292 1309 P U Y 65 distorted distorted 1297 1310 1311 1312 1329 P U Y 66 distorted distorted 1317 1330 1331 1332 1349 P G Y 67 distorted distorted 1337 1350 1351 1352 1372 P G Y 68 distorted distorted 1357 1373 1374 1375 1395 P U Y 69 distorted distorted 1380 1396 1397 1398 1415 P G Y 70 distorted distorted 1403 1416 1417 1418 1438 P A Y 71 distorted distorted 1423 1439 1440 1441 1460 P A Y 72 distorted distorted 1446 1461 1462 1463 1482 P A Y 73 distorted distorted 1468 1483 1484 1485 1504 P U Y 74 distorted distorted 1490 1505 1506 1507 1524 P U Y 75 distorted distorted 1512 1525 1526 1527 1544 P C Y 76 distorted distorted 1532 1545 1546 1547 1564 P C Y 77 distorted distorted 1552 1565 1566 1567 1584 P A Y 78 distorted distorted 1572 1585 1586 1587 1606 P A Y 79 distorted distorted 1592 1607 1608 1609 1628 P A Y 80 distorted distorted 1614 1629 1630 1631 1650 P A Y 81 distorted distorted 1636 1651 1652 1653 1672 P C Y 82 distorted distorted 1658 1673 1674 1675 1692 P C Y 83 distorted distorted 1680 1693 1694 1695 1712 P G Y 84 distorted distorted 1700 1713 1714 1715 1735 P A Y 85 distorted distorted 1720 1736 1737 1738 1757 P C Y 86 distorted distorted 1743 1758 1759 1760 1777 P A Y 87 distorted distorted 1765 1778 1779 1780 1799 P G Y 88 distorted distorted 1785 1800 1801 1802 1822 P U Y 89 distorted distorted 1807 1823 1824 1825 1842 P A Y 90 distorted distorted 1830 1843 1844 1845 1864 P G Y 91 distorted distorted 1850 1865 1866 1867 1887 P A Y 92 distorted distorted 1872 1888 1889 1890 1909 P G Y 93 distorted distorted 1895 1910 1911 1912 1932 P U Y 94 distorted distorted 1917 1933 1934 1935 1952 P C Y 95 distorted distorted 1940 1953 1954 1955 1972 P U Y 96 distorted distorted 1960 1973 1974 1975 1992 P G Y 97 distorted distorted 1980 1993 1994 1995 2015 P G Y 98 distorted distorted 2000 2016 2017 2018 2038 P A Y 99 distorted distorted 2023 2039 2040 2041 2060 P U Y 100 distorted distorted 2046 2061 2062 2063 2080 P G Y 101 distorted distorted 2068 2081 2082 2083 2103 P A Y 102 distorted distorted 2088 2104 2105 2106 2125 P G Y 103 distorted distorted 2111 2126 2127 2128 2148 P A Y 104 distorted distorted 2133 2149 2150 2151 2170 P G Y 105 distorted distorted 2156 2171 2172 2173 2193 P A Y 106 distorted distorted 2178 2194 2195 2196 2215 P A Y 107 distorted distorted 2201 2216 2217 2218 2237 P G Y 108 distorted distorted 2223 2238 2239 2240 2260 P A Y 109 distorted distorted 2245 2261 2262 2263 2282 P U Y 110 distorted distorted 2268 2283 2284 2285 2302 P U Y 111 distorted distorted 2290 2303 2304 2305 2322 P C Y 112 distorted distorted 2310 2323 2324 2325 ---------------------------------------------------------------------------------