ID code: '3F2W' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 21 C1' GTP X 1 beta 16 22 19 44 C1' G X 2 beta 39 45 42 67 C1' A X 3 beta 62 68 65 89 C1' U X 4 beta 84 90 87 109 C1' C X 5 beta 104 110 107 129 C1' U X 6 beta 124 130 127 149 C1' U X 7 beta 144 150 147 169 C1' C X 8 beta 164 170 167 189 C1' G X 9 beta 184 190 187 212 C1' G X 10 beta 207 213 210 235 C1' G X 11 beta 230 236 233 258 C1' G X 12 beta 253 259 256 281 C1' C X 13 beta 276 282 279 301 C1' A X 14 beta 296 302 299 323 C1' G X 15 beta 318 324 321 346 C1' G X 16 beta 341 347 344 369 C1' G X 17 beta 364 370 367 392 C1' U X 18 beta 387 393 390 412 C1' G X 19 beta 407 413 410 435 C1' A X 20 beta 430 436 433 457 C1' A X 21 beta 452 458 455 479 C1' A X 22 beta 474 480 477 501 C1' U X 23 beta 496 502 499 521 C1' U X 24 beta 516 522 519 541 C1' C X 25 beta 536 542 539 561 C1' C X 26 beta 556 562 559 581 C1' C X 27 beta 576 582 579 601 C1' G X 28 beta 596 602 599 624 C1' A X 29 beta 619 625 622 646 C1' C X 30 beta 641 647 644 666 C1' C X 31 beta 661 667 664 686 C1' G X 32 beta 681 687 684 709 C1' G X 33 beta 704 710 707 732 C1' U X 34 beta 727 733 730 752 C1' G X 35 beta 747 753 750 775 C1' G X 36 beta 770 776 773 798 C1' U X 37 beta 793 799 796 818 C1' A X 38 beta 813 819 816 840 C1' U X 39 beta 835 841 838 860 C1' A X 40 beta 855 861 858 882 C1' G X 41 beta 877 883 880 905 C1' U X 42 beta 900 906 903 925 C1' C X 43 beta 920 926 923 945 C1' C X 44 beta 940 946 943 965 C1' A X 45 beta 960 966 963 987 C1' C X 46 beta 982 988 985 1007 C1' G X 47 beta 1002 1008 1005 1030 C1' A X 48 beta 1025 1031 1028 1052 C1' A X 49 beta 1047 1053 1050 1074 C1' A X 50 beta 1069 1075 1072 1096 C1' G X 51 beta 1091 1097 1094 1119 C1' U X 52 beta 1114 1120 1117 1139 C1' A X 53 beta 1134 1140 1137 1161 C1' G X 57 beta 1156 1162 1159 1184 C1' C X 58 beta 1179 1185 1182 1204 C1' U X 59 beta 1199 1205 1202 1224 C1' U X 60 beta 1219 1225 1222 1244 C1' U X 61 beta 1239 1245 1242 1264 C1' G X 62 beta 1259 1265 1262 1287 C1' A X 63 beta 1282 1288 1285 1309 C1' U X 64 beta 1304 1310 1307 1329 C1' U X 65 beta 1324 1330 1327 1349 C1' U X 66 beta 1344 1350 1347 1369 C1' G X 67 beta 1364 1370 1367 1392 C1' G X 68 beta 1387 1393 1390 1415 C1' U X 69 beta 1410 1416 1413 1435 C1' G X 70 beta 1430 1436 1433 1458 C1' A X 71 beta 1453 1459 1456 1480 C1' A X 72 beta 1475 1481 1478 1502 C1' A X 73 beta 1497 1503 1500 1524 C1' U X 74 beta 1519 1525 1522 1544 C1' U X 75 beta 1539 1545 1542 1564 C1' C X 76 beta 1559 1565 1562 1584 C1' C X 77 beta 1579 1585 1582 1604 C1' A X 78 beta 1599 1605 1602 1626 C1' A X 79 beta 1621 1627 1624 1648 C1' A X 80 beta 1643 1649 1646 1670 C1' A X 81 beta 1665 1671 1668 1692 C1' C X 82 beta 1687 1693 1690 1712 C1' C X 83 beta 1707 1713 1710 1732 C1' G X 84 beta 1727 1733 1730 1755 C1' A X 85 beta 1750 1756 1753 1777 C1' C X 86 beta 1772 1778 1775 1797 C1' A X 87 beta 1792 1798 1795 1819 C1' G X 88 beta 1814 1820 1817 1842 C1' U X 89 beta 1837 1843 1840 1862 C1' A X 90 beta 1857 1863 1860 1884 C1' G X 91 beta 1879 1885 1882 1907 C1' A X 92 beta 1902 1908 1905 1929 C1' G X 93 beta 1924 1930 1927 1952 C1' U X 94 beta 1947 1953 1950 1972 C1' C X 95 beta 1967 1973 1970 1992 C1' U X 96 beta 1987 1993 1990 2012 C1' G X 97 beta 2007 2013 2010 2035 C1' G X 98 beta 2030 2036 2033 2058 C1' A X 99 beta 2053 2059 2056 2080 C1' U X 100 beta 2075 2081 2078 2100 C1' G X 101 beta 2095 2101 2098 2123 C1' A X 102 beta 2118 2124 2121 2145 C1' G X 103 beta 2140 2146 2143 2168 C1' A X 104 beta 2163 2169 2166 2190 C1' G X 105 beta 2185 2191 2188 2213 C1' A X 106 beta 2208 2214 2211 2235 C1' A X 107 beta 2230 2236 2233 2257 C1' G X 108 beta 2252 2258 2255 2280 C1' A X 109 beta 2275 2281 2278 2302 C1' U X 110 beta 2297 2303 2300 2322 C1' U X 111 beta 2317 2323 2320 2345 C1' CCC X 112 beta 2340 2346 2343 2373 C1' FMN X 200 2374 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 19 C2' GTP X 1 OK 21 17 20 42 C2' G X 2 OK 44 40 43 65 C2' A X 3 OK 67 63 66 87 C2' U X 4 OK 89 85 88 107 C2' C X 5 OK 109 105 108 127 C2' U X 6 OK 129 125 128 147 C2' U X 7 OK 149 145 148 167 C2' C X 8 OK 169 165 168 187 C2' G X 9 OK 189 185 188 210 C2' G X 10 OK 212 208 211 233 C2' G X 11 OK 235 231 234 256 C2' G X 12 OK 258 254 257 279 C2' C X 13 OK 281 277 280 299 C2' A X 14 OK 301 297 300 321 C2' G X 15 OK 323 319 322 344 C2' G X 16 OK 346 342 345 367 C2' G X 17 OK 369 365 368 390 C2' U X 18 OK 392 388 391 410 C2' G X 19 OK 412 408 411 433 C2' A X 20 OK 435 431 434 455 C2' A X 21 OK 457 453 456 477 C2' A X 22 OK 479 475 478 499 C2' U X 23 OK 501 497 500 519 C2' U X 24 OK 521 517 520 539 C2' C X 25 OK 541 537 540 559 C2' C X 26 OK 561 557 560 579 C2' C X 27 OK 581 577 580 599 C2' G X 28 OK 601 597 600 622 C2' A X 29 OK 624 620 623 644 C2' C X 30 OK 646 642 645 664 C2' C X 31 OK 666 662 665 684 C2' G X 32 OK 686 682 685 707 C2' G X 33 OK 709 705 708 730 C2' U X 34 OK 732 728 731 750 C2' G X 35 OK 752 748 751 773 C2' G X 36 OK 775 771 774 796 C2' U X 37 OK 798 794 797 816 C2' A X 38 OK 818 814 817 838 C2' U X 39 OK 840 836 839 858 C2' A X 40 OK 860 856 859 880 C2' G X 41 OK 882 878 881 903 C2' U X 42 OK 905 901 904 923 C2' C X 43 OK 925 921 924 943 C2' C X 44 OK 945 941 944 963 C2' A X 45 OK 965 961 964 985 C2' C X 46 OK 987 983 986 1005 C2' G X 47 OK 1007 1003 1006 1028 C2' A X 48 OK 1030 1026 1029 1050 C2' A X 49 OK 1052 1048 1051 1072 C2' A X 50 OK 1074 1070 1073 1094 C2' G X 51 OK 1096 1092 1095 1117 C2' U X 52 OK 1119 1115 1118 1137 C2' A X 53 OK 1139 1135 1138 1159 C2' G X 57 OK 1161 1157 1160 1182 C2' C X 58 OK 1184 1180 1183 1202 C2' U X 59 OK 1204 1200 1203 1222 C2' U X 60 OK 1224 1220 1223 1242 C2' U X 61 OK 1244 1240 1243 1262 C2' G X 62 OK 1264 1260 1263 1285 C2' A X 63 OK 1287 1283 1286 1307 C2' U X 64 OK 1309 1305 1308 1327 C2' U X 65 OK 1329 1325 1328 1347 C2' U X 66 OK 1349 1345 1348 1367 C2' G X 67 OK 1369 1365 1368 1390 C2' G X 68 OK 1392 1388 1391 1413 C2' U X 69 OK 1415 1411 1414 1433 C2' G X 70 OK 1435 1431 1434 1456 C2' A X 71 OK 1458 1454 1457 1478 C2' A X 72 OK 1480 1476 1479 1500 C2' A X 73 OK 1502 1498 1501 1522 C2' U X 74 OK 1524 1520 1523 1542 C2' U X 75 OK 1544 1540 1543 1562 C2' C X 76 OK 1564 1560 1563 1582 C2' C X 77 OK 1584 1580 1583 1602 C2' A X 78 OK 1604 1600 1603 1624 C2' A X 79 OK 1626 1622 1625 1646 C2' A X 80 OK 1648 1644 1647 1668 C2' A X 81 OK 1670 1666 1669 1690 C2' C X 82 OK 1692 1688 1691 1710 C2' C X 83 OK 1712 1708 1711 1730 C2' G X 84 OK 1732 1728 1731 1753 C2' A X 85 OK 1755 1751 1754 1775 C2' C X 86 OK 1777 1773 1776 1795 C2' A X 87 OK 1797 1793 1796 1817 C2' G X 88 OK 1819 1815 1818 1840 C2' U X 89 OK 1842 1838 1841 1860 C2' A X 90 OK 1862 1858 1861 1882 C2' G X 91 OK 1884 1880 1883 1905 C2' A X 92 OK 1907 1903 1906 1927 C2' G X 93 OK 1929 1925 1928 1950 C2' U X 94 OK 1952 1948 1951 1970 C2' C X 95 OK 1972 1968 1971 1990 C2' U X 96 OK 1992 1988 1991 2010 C2' G X 97 OK 2012 2008 2011 2033 C2' G X 98 OK 2035 2031 2034 2056 C2' A X 99 OK 2058 2054 2057 2078 C2' U X 100 OK 2080 2076 2079 2098 C2' G X 101 OK 2100 2096 2099 2121 C2' A X 102 OK 2123 2119 2122 2143 C2' G X 103 OK 2145 2141 2144 2166 C2' A X 104 OK 2168 2164 2167 2188 C2' G X 105 OK 2190 2186 2189 2211 C2' A X 106 OK 2213 2209 2212 2233 C2' A X 107 OK 2235 2231 2234 2255 C2' G X 108 OK 2257 2253 2256 2278 C2' A X 109 OK 2280 2276 2279 2300 C2' U X 110 OK 2302 2298 2301 2320 C2' U X 111 OK 2322 2318 2321 2343 C2' CCC X 112 OK 2345 2341 2344 2374 C2' FMN X 200 OK 2373 2376 2375 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 17 C3' GTP X 1 OK 15 18 19 40 C3' G X 2 OK 38 41 42 63 C3' A X 3 OK 61 64 65 85 C3' U X 4 OK 83 86 87 105 C3' C X 5 OK 103 106 107 125 C3' U X 6 OK 123 126 127 145 C3' U X 7 OK 143 146 147 165 C3' C X 8 OK 163 166 167 185 C3' G X 9 OK 183 186 187 208 C3' G X 10 OK 206 209 210 231 C3' G X 11 OK 229 232 233 254 C3' G X 12 OK 252 255 256 277 C3' C X 13 OK 275 278 279 297 C3' A X 14 OK 295 298 299 319 C3' G X 15 OK 317 320 321 342 C3' G X 16 OK 340 343 344 365 C3' G X 17 OK 363 366 367 388 C3' U X 18 OK 386 389 390 408 C3' G X 19 OK 406 409 410 431 C3' A X 20 OK 429 432 433 453 C3' A X 21 OK 451 454 455 475 C3' A X 22 OK 473 476 477 497 C3' U X 23 OK 495 498 499 517 C3' U X 24 OK 515 518 519 537 C3' C X 25 OK 535 538 539 557 C3' C X 26 OK 555 558 559 577 C3' C X 27 OK 575 578 579 597 C3' G X 28 OK 595 598 599 620 C3' A X 29 OK 618 621 622 642 C3' C X 30 OK 640 643 644 662 C3' C X 31 OK 660 663 664 682 C3' G X 32 OK 680 683 684 705 C3' G X 33 OK 703 706 707 728 C3' U X 34 OK 726 729 730 748 C3' G X 35 OK 746 749 750 771 C3' G X 36 OK 769 772 773 794 C3' U X 37 OK 792 795 796 814 C3' A X 38 OK 812 815 816 836 C3' U X 39 OK 834 837 838 856 C3' A X 40 OK 854 857 858 878 C3' G X 41 OK 876 879 880 901 C3' U X 42 OK 899 902 903 921 C3' C X 43 OK 919 922 923 941 C3' C X 44 OK 939 942 943 961 C3' A X 45 OK 959 962 963 983 C3' C X 46 OK 981 984 985 1003 C3' G X 47 OK 1001 1004 1005 1026 C3' A X 48 OK 1024 1027 1028 1048 C3' A X 49 OK 1046 1049 1050 1070 C3' A X 50 OK 1068 1071 1072 1092 C3' G X 51 OK 1090 1093 1094 1115 C3' U X 52 OK 1113 1116 1117 1135 C3' A X 53 OK 1133 1136 1137 1157 C3' G X 57 OK 1155 1158 1159 1180 C3' C X 58 OK 1178 1181 1182 1200 C3' U X 59 OK 1198 1201 1202 1220 C3' U X 60 OK 1218 1221 1222 1240 C3' U X 61 OK 1238 1241 1242 1260 C3' G X 62 OK 1258 1261 1262 1283 C3' A X 63 OK 1281 1284 1285 1305 C3' U X 64 OK 1303 1306 1307 1325 C3' U X 65 OK 1323 1326 1327 1345 C3' U X 66 OK 1343 1346 1347 1365 C3' G X 67 OK 1363 1366 1367 1388 C3' G X 68 OK 1386 1389 1390 1411 C3' U X 69 OK 1409 1412 1413 1431 C3' G X 70 OK 1429 1432 1433 1454 C3' A X 71 OK 1452 1455 1456 1476 C3' A X 72 OK 1474 1477 1478 1498 C3' A X 73 OK 1496 1499 1500 1520 C3' U X 74 OK 1518 1521 1522 1540 C3' U X 75 OK 1538 1541 1542 1560 C3' C X 76 OK 1558 1561 1562 1580 C3' C X 77 OK 1578 1581 1582 1600 C3' A X 78 OK 1598 1601 1602 1622 C3' A X 79 OK 1620 1623 1624 1644 C3' A X 80 OK 1642 1645 1646 1666 C3' A X 81 OK 1664 1667 1668 1688 C3' C X 82 OK 1686 1689 1690 1708 C3' C X 83 OK 1706 1709 1710 1728 C3' G X 84 OK 1726 1729 1730 1751 C3' A X 85 OK 1749 1752 1753 1773 C3' C X 86 OK 1771 1774 1775 1793 C3' A X 87 OK 1791 1794 1795 1815 C3' G X 88 OK 1813 1816 1817 1838 C3' U X 89 OK 1836 1839 1840 1858 C3' A X 90 OK 1856 1859 1860 1880 C3' G X 91 OK 1878 1881 1882 1903 C3' A X 92 OK 1901 1904 1905 1925 C3' G X 93 OK 1923 1926 1927 1948 C3' U X 94 OK 1946 1949 1950 1968 C3' C X 95 OK 1966 1969 1970 1988 C3' U X 96 OK 1986 1989 1990 2008 C3' G X 97 OK 2006 2009 2010 2031 C3' G X 98 OK 2029 2032 2033 2054 C3' A X 99 OK 2052 2055 2056 2076 C3' U X 100 OK 2074 2077 2078 2096 C3' G X 101 OK 2094 2097 2098 2119 C3' A X 102 OK 2117 2120 2121 2141 C3' G X 103 OK 2139 2142 2143 2164 C3' A X 104 OK 2162 2165 2166 2186 C3' G X 105 OK 2184 2187 2188 2209 C3' A X 106 OK 2207 2210 2211 2231 C3' A X 107 OK 2229 2232 2233 2253 C3' G X 108 OK 2251 2254 2255 2276 C3' A X 109 OK 2274 2277 2278 2298 C3' U X 110 OK 2296 2299 2300 2318 C3' U X 111 OK 2316 2319 2320 2341 C3' CCC X 112 OK 2339 2342 2343 2376 C3' FMN X 200 OK 2378 2377 2374 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 15 C4' GTP X 1 OK 17 14 16 38 C4' G X 2 OK 40 37 39 61 C4' A X 3 OK 63 60 62 83 C4' U X 4 OK 85 82 84 103 C4' C X 5 OK 105 102 104 123 C4' U X 6 OK 125 122 124 143 C4' U X 7 OK 145 142 144 163 C4' C X 8 OK 165 162 164 183 C4' G X 9 OK 185 182 184 206 C4' G X 10 OK 208 205 207 229 C4' G X 11 OK 231 228 230 252 C4' G X 12 OK 254 251 253 275 C4' C X 13 OK 277 274 276 295 C4' A X 14 OK 297 294 296 317 C4' G X 15 OK 319 316 318 340 C4' G X 16 OK 342 339 341 363 C4' G X 17 OK 365 362 364 386 C4' U X 18 OK 388 385 387 406 C4' G X 19 OK 408 405 407 429 C4' A X 20 OK 431 428 430 451 C4' A X 21 OK 453 450 452 473 C4' A X 22 OK 475 472 474 495 C4' U X 23 OK 497 494 496 515 C4' U X 24 OK 517 514 516 535 C4' C X 25 OK 537 534 536 555 C4' C X 26 OK 557 554 556 575 C4' C X 27 OK 577 574 576 595 C4' G X 28 OK 597 594 596 618 C4' A X 29 OK 620 617 619 640 C4' C X 30 OK 642 639 641 660 C4' C X 31 OK 662 659 661 680 C4' G X 32 OK 682 679 681 703 C4' G X 33 OK 705 702 704 726 C4' U X 34 OK 728 725 727 746 C4' G X 35 OK 748 745 747 769 C4' G X 36 OK 771 768 770 792 C4' U X 37 OK 794 791 793 812 C4' A X 38 OK 814 811 813 834 C4' U X 39 OK 836 833 835 854 C4' A X 40 OK 856 853 855 876 C4' G X 41 OK 878 875 877 899 C4' U X 42 OK 901 898 900 919 C4' C X 43 OK 921 918 920 939 C4' C X 44 OK 941 938 940 959 C4' A X 45 OK 961 958 960 981 C4' C X 46 OK 983 980 982 1001 C4' G X 47 OK 1003 1000 1002 1024 C4' A X 48 OK 1026 1023 1025 1046 C4' A X 49 OK 1048 1045 1047 1068 C4' A X 50 OK 1070 1067 1069 1090 C4' G X 51 OK 1092 1089 1091 1113 C4' U X 52 OK 1115 1112 1114 1133 C4' A X 53 OK 1135 1132 1134 1155 C4' G X 57 OK 1157 1154 1156 1178 C4' C X 58 OK 1180 1177 1179 1198 C4' U X 59 OK 1200 1197 1199 1218 C4' U X 60 OK 1220 1217 1219 1238 C4' U X 61 OK 1240 1237 1239 1258 C4' G X 62 OK 1260 1257 1259 1281 C4' A X 63 OK 1283 1280 1282 1303 C4' U X 64 OK 1305 1302 1304 1323 C4' U X 65 OK 1325 1322 1324 1343 C4' U X 66 OK 1345 1342 1344 1363 C4' G X 67 OK 1365 1362 1364 1386 C4' G X 68 OK 1388 1385 1387 1409 C4' U X 69 OK 1411 1408 1410 1429 C4' G X 70 OK 1431 1428 1430 1452 C4' A X 71 OK 1454 1451 1453 1474 C4' A X 72 OK 1476 1473 1475 1496 C4' A X 73 OK 1498 1495 1497 1518 C4' U X 74 OK 1520 1517 1519 1538 C4' U X 75 OK 1540 1537 1539 1558 C4' C X 76 OK 1560 1557 1559 1578 C4' C X 77 OK 1580 1577 1579 1598 C4' A X 78 OK 1600 1597 1599 1620 C4' A X 79 OK 1622 1619 1621 1642 C4' A X 80 OK 1644 1641 1643 1664 C4' A X 81 OK 1666 1663 1665 1686 C4' C X 82 OK 1688 1685 1687 1706 C4' C X 83 OK 1708 1705 1707 1726 C4' G X 84 OK 1728 1725 1727 1749 C4' A X 85 OK 1751 1748 1750 1771 C4' C X 86 OK 1773 1770 1772 1791 C4' A X 87 OK 1793 1790 1792 1813 C4' G X 88 OK 1815 1812 1814 1836 C4' U X 89 OK 1838 1835 1837 1856 C4' A X 90 OK 1858 1855 1857 1878 C4' G X 91 OK 1880 1877 1879 1901 C4' A X 92 OK 1903 1900 1902 1923 C4' G X 93 OK 1925 1922 1924 1946 C4' U X 94 OK 1948 1945 1947 1966 C4' C X 95 OK 1968 1965 1967 1986 C4' U X 96 OK 1988 1985 1987 2006 C4' G X 97 OK 2008 2005 2007 2029 C4' G X 98 OK 2031 2028 2030 2052 C4' A X 99 OK 2054 2051 2053 2074 C4' U X 100 OK 2076 2073 2075 2094 C4' G X 101 OK 2096 2093 2095 2117 C4' A X 102 OK 2119 2116 2118 2139 C4' G X 103 OK 2141 2138 2140 2162 C4' A X 104 OK 2164 2161 2163 2184 C4' G X 105 OK 2186 2183 2185 2207 C4' A X 106 OK 2209 2206 2208 2229 C4' A X 107 OK 2231 2228 2230 2251 C4' G X 108 OK 2253 2250 2252 2274 C4' A X 109 OK 2276 2273 2275 2296 C4' U X 110 OK 2298 2295 2297 2316 C4' U X 111 OK 2318 2315 2317 2339 C4' CCC X 112 OK 2341 2338 2340 2378 C4' FMN X 200 OK 2376 2380 2379 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 14 C5' GTP X 1 13 15 37 C5' G X 2 36 38 60 C5' A X 3 59 61 82 C5' U X 4 81 83 102 C5' C X 5 101 103 122 C5' U X 6 121 123 142 C5' U X 7 141 143 162 C5' C X 8 161 163 182 C5' G X 9 181 183 205 C5' G X 10 204 206 228 C5' G X 11 227 229 251 C5' G X 12 250 252 274 C5' C X 13 273 275 294 C5' A X 14 293 295 316 C5' G X 15 315 317 339 C5' G X 16 338 340 362 C5' G X 17 361 363 385 C5' U X 18 384 386 405 C5' G X 19 404 406 428 C5' A X 20 427 429 450 C5' A X 21 449 451 472 C5' A X 22 471 473 494 C5' U X 23 493 495 514 C5' U X 24 513 515 534 C5' C X 25 533 535 554 C5' C X 26 553 555 574 C5' C X 27 573 575 594 C5' G X 28 593 595 617 C5' A X 29 616 618 639 C5' C X 30 638 640 659 C5' C X 31 658 660 679 C5' G X 32 678 680 702 C5' G X 33 701 703 725 C5' U X 34 724 726 745 C5' G X 35 744 746 768 C5' G X 36 767 769 791 C5' U X 37 790 792 811 C5' A X 38 810 812 833 C5' U X 39 832 834 853 C5' A X 40 852 854 875 C5' G X 41 874 876 898 C5' U X 42 897 899 918 C5' C X 43 917 919 938 C5' C X 44 937 939 958 C5' A X 45 957 959 980 C5' C X 46 979 981 1000 C5' G X 47 999 1001 1023 C5' A X 48 1022 1024 1045 C5' A X 49 1044 1046 1067 C5' A X 50 1066 1068 1089 C5' G X 51 1088 1090 1112 C5' U X 52 1111 1113 1132 C5' A X 53 1131 1133 1154 C5' G X 57 1153 1155 1177 C5' C X 58 1176 1178 1197 C5' U X 59 1196 1198 1217 C5' U X 60 1216 1218 1237 C5' U X 61 1236 1238 1257 C5' G X 62 1256 1258 1280 C5' A X 63 1279 1281 1302 C5' U X 64 1301 1303 1322 C5' U X 65 1321 1323 1342 C5' U X 66 1341 1343 1362 C5' G X 67 1361 1363 1385 C5' G X 68 1384 1386 1408 C5' U X 69 1407 1409 1428 C5' G X 70 1427 1429 1451 C5' A X 71 1450 1452 1473 C5' A X 72 1472 1474 1495 C5' A X 73 1494 1496 1517 C5' U X 74 1516 1518 1537 C5' U X 75 1536 1538 1557 C5' C X 76 1556 1558 1577 C5' C X 77 1576 1578 1597 C5' A X 78 1596 1598 1619 C5' A X 79 1618 1620 1641 C5' A X 80 1640 1642 1663 C5' A X 81 1662 1664 1685 C5' C X 82 1684 1686 1705 C5' C X 83 1704 1706 1725 C5' G X 84 1724 1726 1748 C5' A X 85 1747 1749 1770 C5' C X 86 1769 1771 1790 C5' A X 87 1789 1791 1812 C5' G X 88 1811 1813 1835 C5' U X 89 1834 1836 1855 C5' A X 90 1854 1856 1877 C5' G X 91 1876 1878 1900 C5' A X 92 1899 1901 1922 C5' G X 93 1921 1923 1945 C5' U X 94 1944 1946 1965 C5' C X 95 1964 1966 1985 C5' U X 96 1984 1986 2005 C5' G X 97 2004 2006 2028 C5' G X 98 2027 2029 2051 C5' A X 99 2050 2052 2073 C5' U X 100 2072 2074 2093 C5' G X 101 2092 2094 2116 C5' A X 102 2115 2117 2138 C5' G X 103 2137 2139 2161 C5' A X 104 2160 2162 2183 C5' G X 105 2182 2184 2206 C5' A X 106 2205 2207 2228 C5' A X 107 2227 2229 2250 C5' G X 108 2249 2251 2273 C5' A X 109 2272 2274 2295 C5' U X 110 2294 2296 2315 C5' U X 111 2314 2316 2338 C5' CCC X 112 2337 2339 2380 C5' FMN X 200 2381 2378 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 33 P G X 2 distorted distorted 18 34 35 36 56 P A X 3 distorted distorted 41 57 58 59 78 P U X 4 distorted distorted 64 79 80 81 98 P C X 5 distorted distorted 86 99 100 101 118 P U X 6 distorted distorted 106 119 120 121 138 P U X 7 distorted distorted 126 139 140 141 158 P C X 8 distorted distorted 146 159 160 161 178 P G X 9 distorted distorted 166 179 180 181 201 P G X 10 distorted distorted 186 202 203 204 224 P G X 11 distorted distorted 209 225 226 227 247 P G X 12 distorted distorted 232 248 249 250 270 P C X 13 distorted distorted 255 271 272 273 290 P A X 14 distorted distorted 278 291 292 293 312 P G X 15 distorted distorted 298 313 314 315 335 P G X 16 distorted distorted 320 336 337 338 358 P G X 17 distorted distorted 343 359 360 361 381 P U X 18 distorted distorted 366 382 383 384 401 P G X 19 distorted distorted 389 402 403 404 424 P A X 20 distorted distorted 409 425 426 427 446 P A X 21 distorted distorted 432 447 448 449 468 P A X 22 distorted distorted 454 469 470 471 490 P U X 23 distorted distorted 476 491 492 493 510 P U X 24 distorted distorted 498 511 512 513 530 P C X 25 distorted distorted 518 531 532 533 550 P C X 26 distorted distorted 538 551 552 553 570 P C X 27 distorted distorted 558 571 572 573 590 P G X 28 distorted distorted 578 591 592 593 613 P A X 29 distorted distorted 598 614 615 616 635 P C X 30 distorted distorted 621 636 637 638 655 P C X 31 distorted distorted 643 656 657 658 675 P G X 32 distorted distorted 663 676 677 678 698 P G X 33 distorted distorted 683 699 700 701 721 P U X 34 distorted distorted 706 722 723 724 741 P G X 35 distorted distorted 729 742 743 744 764 P G X 36 distorted distorted 749 765 766 767 787 P U X 37 distorted distorted 772 788 789 790 807 P A X 38 distorted distorted 795 808 809 810 829 P U X 39 distorted distorted 815 830 831 832 849 P A X 40 distorted distorted 837 850 851 852 871 P G X 41 distorted distorted 857 872 873 874 894 P U X 42 distorted distorted 879 895 896 897 914 P C X 43 distorted distorted 902 915 916 917 934 P C X 44 distorted distorted 922 935 936 937 954 P A X 45 distorted distorted 942 955 956 957 976 P C X 46 distorted distorted 962 977 978 979 996 P G X 47 distorted distorted 984 997 998 999 1019 P A X 48 distorted distorted 1004 1020 1021 1022 1041 P A X 49 distorted distorted 1027 1042 1043 1044 1063 P A X 50 distorted distorted 1049 1064 1065 1066 1085 P G X 51 distorted distorted 1071 1086 1087 1088 1108 P U X 52 distorted distorted 1093 1109 1110 1111 1128 P A X 53 distorted distorted 1116 1129 1130 1131 1150 P G X 57 distorted distorted 1151 1152 1153 1173 P C X 58 distorted distorted 1158 1174 1175 1176 1193 P U X 59 distorted distorted 1181 1194 1195 1196 1213 P U X 60 distorted distorted 1201 1214 1215 1216 1233 P U X 61 distorted distorted 1221 1234 1235 1236 1253 P G X 62 distorted distorted 1241 1254 1255 1256 1276 P A X 63 distorted distorted 1261 1277 1278 1279 1298 P U X 64 distorted distorted 1284 1299 1300 1301 1318 P U X 65 distorted distorted 1306 1319 1320 1321 1338 P U X 66 distorted distorted 1326 1339 1340 1341 1358 P G X 67 distorted distorted 1346 1359 1360 1361 1381 P G X 68 distorted distorted 1366 1382 1383 1384 1404 P U X 69 distorted distorted 1389 1405 1406 1407 1424 P G X 70 distorted distorted 1412 1425 1426 1427 1447 P A X 71 distorted distorted 1432 1448 1449 1450 1469 P A X 72 distorted distorted 1455 1470 1471 1472 1491 P A X 73 distorted distorted 1477 1492 1493 1494 1513 P U X 74 distorted distorted 1499 1514 1515 1516 1533 P U X 75 distorted distorted 1521 1534 1535 1536 1553 P C X 76 distorted distorted 1541 1554 1555 1556 1573 P C X 77 distorted distorted 1561 1574 1575 1576 1593 P A X 78 distorted distorted 1581 1594 1595 1596 1615 P A X 79 distorted distorted 1601 1616 1617 1618 1637 P A X 80 distorted distorted 1623 1638 1639 1640 1659 P A X 81 distorted distorted 1645 1660 1661 1662 1681 P C X 82 distorted distorted 1667 1682 1683 1684 1701 P C X 83 distorted distorted 1689 1702 1703 1704 1721 P G X 84 distorted distorted 1709 1722 1723 1724 1744 P A X 85 distorted distorted 1729 1745 1746 1747 1766 P C X 86 distorted distorted 1752 1767 1768 1769 1786 P A X 87 distorted distorted 1774 1787 1788 1789 1808 P G X 88 distorted distorted 1794 1809 1810 1811 1831 P U X 89 distorted distorted 1816 1832 1833 1834 1851 P A X 90 distorted distorted 1839 1852 1853 1854 1873 P G X 91 distorted distorted 1859 1874 1875 1876 1896 P A X 92 distorted distorted 1881 1897 1898 1899 1918 P G X 93 distorted distorted 1904 1919 1920 1921 1941 P U X 94 distorted distorted 1926 1942 1943 1944 1961 P C X 95 distorted distorted 1949 1962 1963 1964 1981 P U X 96 distorted distorted 1969 1982 1983 1984 2001 P G X 97 distorted distorted 1989 2002 2003 2004 2024 P G X 98 distorted distorted 2009 2025 2026 2027 2047 P A X 99 distorted distorted 2032 2048 2049 2050 2069 P U X 100 distorted distorted 2055 2070 2071 2072 2089 P G X 101 distorted distorted 2077 2090 2091 2092 2112 P A X 102 distorted distorted 2097 2113 2114 2115 2134 P G X 103 distorted distorted 2120 2135 2136 2137 2157 P A X 104 distorted distorted 2142 2158 2159 2160 2179 P G X 105 distorted distorted 2165 2180 2181 2182 2202 P A X 106 distorted distorted 2187 2203 2204 2205 2224 P A X 107 distorted distorted 2210 2225 2226 2227 2246 P G X 108 distorted distorted 2232 2247 2248 2249 2269 P A X 109 distorted distorted 2254 2270 2271 2272 2291 P U X 110 distorted distorted 2277 2292 2293 2294 2311 P U X 111 distorted distorted 2299 2312 2313 2314 2334 P CCC X 112 distorted distorted 2319 2335 2336 2337 2382 P FMN X 200 OK OK 2383 2384 2381 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