ID code: '3EPJ' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 3352 C1' C E 2 beta 3347 3353 3350 3372 C1' U E 3 beta 3367 3373 3370 3392 C1' C E 4 beta 3387 3393 3390 3412 C1' G E 5 beta 3407 3413 3410 3435 C1' U E 6 beta 3430 3436 3433 3455 C1' A E 7 beta 3450 3456 3453 3477 C1' U E 8 beta 3472 3478 3475 3497 C1' G E 9 beta 3492 3498 3495 3520 C1' G E 10 beta 3515 3521 3518 3543 C1' C E 11 beta 3538 3544 3541 3563 C1' G E 12 beta 3558 3564 3561 3586 C1' C E 13 beta 3581 3587 3584 3606 C1' A E 14 beta 3601 3607 3604 3628 C1' G E 15 beta 3623 3629 3626 3651 C1' U E 16 beta 3646 3652 3649 3671 C1' G E 18 beta 3666 3672 3669 3694 C1' G E 19 beta 3689 3695 3692 3717 C1' U E 20 beta 3712 3718 3715 3737 C1' A E 21 beta 3732 3738 3735 3759 C1' G E 22 beta 3754 3760 3757 3782 C1' C E 23 beta 3777 3783 3780 3802 C1' G E 24 beta 3797 3803 3800 3825 C1' C E 25 beta 3820 3826 3823 3845 C1' A E 26 beta 3840 3846 3843 3867 C1' G E 27 beta 3862 3868 3865 3890 C1' C E 28 beta 3885 3891 3888 3910 C1' A E 29 beta 3905 3911 3908 3932 C1' G E 30 beta 3927 3933 3930 3955 C1' A E 31 beta 3950 3956 3953 3977 C1' U E 32 beta 3972 3978 3975 3997 C1' U E 33 beta 3992 3998 3995 4017 C1' G E 34 beta 4012 4018 4015 4040 C1' C E 35 beta 4035 4041 4038 4060 C1' A E 36 beta 4055 4061 4058 4082 C1' A E 37 beta 4077 4083 4080 4104 C1' A E 38 beta 4099 4105 4102 4126 C1' U E 39 beta 4121 4127 4124 4146 C1' C E 40 beta 4141 4147 4144 4166 C1' U E 41 beta 4161 4167 4164 4186 C1' G E 42 beta 4181 4187 4184 4209 C1' U E 43 beta 4204 4210 4207 4229 C1' U E 44 beta 4224 4230 4227 4249 C1' G E 45 beta 4244 4250 4247 4272 C1' G E 46 beta 4267 4273 4270 4295 C1' U E 47 beta 4290 4296 4293 4315 C1' C E 48 beta 4310 4316 4313 4335 C1' C E 49 beta 4330 4336 4333 4355 C1' U E 50 beta 4350 4356 4353 4375 C1' U E 51 beta 4370 4376 4373 4395 C1' A E 52 beta 4390 4396 4393 4417 C1' G E 53 beta 4412 4418 4415 4440 C1' U E 54 beta 4435 4441 4438 4460 C1' U E 55 beta 4455 4461 4458 4480 C1' C E 56 beta 4475 4481 4478 4500 C1' G E 57 beta 4495 4501 4498 4523 C1' A E 58 beta 4518 4524 4521 4545 C1' U E 59 beta 4540 4546 4543 4565 C1' C E 60 beta 4560 4566 4563 4585 C1' C E 61 beta 4580 4586 4583 4605 C1' U E 62 beta 4600 4606 4603 4625 C1' G E 63 beta 4620 4626 4623 4648 C1' A E 64 beta 4643 4649 4646 4670 C1' G E 65 beta 4665 4671 4668 4693 C1' U E 66 beta 4688 4694 4691 4713 C1' G E 67 beta 4708 4714 4711 4736 C1' C E 68 beta 4731 4737 4734 4756 C1' G E 69 beta 4751 4757 4754 4779 C1' A E 70 beta 4774 4780 4777 4801 C1' G E 71 beta 4796 4802 4799 8165 C1' C F 2 beta 8160 8166 8163 8185 C1' U F 3 beta 8180 8186 8183 8205 C1' C F 4 beta 8200 8206 8203 8225 C1' G F 5 beta 8220 8226 8223 8248 C1' U F 6 beta 8243 8249 8246 8268 C1' A F 7 beta 8263 8269 8266 8290 C1' U F 8 beta 8285 8291 8288 8310 C1' G F 9 beta 8305 8311 8308 8333 C1' G F 10 beta 8328 8334 8331 8356 C1' C F 11 beta 8351 8357 8354 8376 C1' G F 12 beta 8371 8377 8374 8399 C1' C F 13 beta 8394 8400 8397 8419 C1' A F 14 beta 8414 8420 8417 8441 C1' G F 15 beta 8436 8442 8439 8464 C1' U F 16 beta 8459 8465 8462 8484 C1' G F 18 beta 8479 8485 8482 8507 C1' G F 19 beta 8502 8508 8505 8530 C1' U F 20 beta 8525 8531 8528 8550 C1' A F 21 beta 8545 8551 8548 8572 C1' G F 22 beta 8567 8573 8570 8595 C1' C F 23 beta 8590 8596 8593 8615 C1' G F 24 beta 8610 8616 8613 8638 C1' C F 25 beta 8633 8639 8636 8658 C1' A F 26 beta 8653 8659 8656 8680 C1' G F 27 beta 8675 8681 8678 8703 C1' C F 28 beta 8698 8704 8701 8723 C1' A F 29 beta 8718 8724 8721 8745 C1' G F 30 beta 8740 8746 8743 8768 C1' A F 31 beta 8763 8769 8766 8790 C1' U F 32 beta 8785 8791 8788 8810 C1' U F 33 beta 8805 8811 8808 8830 C1' G F 34 beta 8825 8831 8828 8853 C1' C F 35 beta 8848 8854 8851 8873 C1' A F 36 beta 8868 8874 8871 8895 C1' A F 37 beta 8890 8896 8893 8917 C1' A F 38 beta 8912 8918 8915 8939 C1' U F 39 beta 8934 8940 8937 8959 C1' C F 40 beta 8954 8960 8957 8979 C1' U F 41 beta 8974 8980 8977 8999 C1' G F 42 beta 8994 9000 8997 9022 C1' U F 43 beta 9017 9023 9020 9042 C1' U F 44 beta 9037 9043 9040 9062 C1' G F 45 beta 9057 9063 9060 9085 C1' G F 46 beta 9080 9086 9083 9108 C1' U F 47 beta 9103 9109 9106 9128 C1' C F 48 beta 9123 9129 9126 9148 C1' C F 49 beta 9143 9149 9146 9168 C1' U F 50 beta 9163 9169 9166 9188 C1' U F 51 beta 9183 9189 9186 9208 C1' A F 52 beta 9203 9209 9206 9230 C1' G F 53 beta 9225 9231 9228 9253 C1' U F 54 beta 9248 9254 9251 9273 C1' U F 55 beta 9268 9274 9271 9293 C1' C F 56 beta 9288 9294 9291 9313 C1' G F 57 beta 9308 9314 9311 9336 C1' A F 58 beta 9331 9337 9334 9358 C1' U F 59 beta 9353 9359 9356 9378 C1' C F 60 beta 9373 9379 9376 9398 C1' C F 61 beta 9393 9399 9396 9418 C1' U F 62 beta 9413 9419 9416 9438 C1' G F 63 beta 9433 9439 9436 9461 C1' A F 64 beta 9456 9462 9459 9483 C1' G F 65 beta 9478 9484 9481 9506 C1' U F 66 beta 9501 9507 9504 9526 C1' G F 67 beta 9521 9527 9524 9549 C1' C F 68 beta 9544 9550 9547 9569 C1' G F 69 beta 9564 9570 9567 9592 C1' A F 70 beta 9587 9593 9590 9614 C1' G F 71 beta 9609 9615 9612 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 3350 C2' C E 2 OK 3352 3348 3351 3370 C2' U E 3 OK 3372 3368 3371 3390 C2' C E 4 OK 3392 3388 3391 3410 C2' G E 5 OK 3412 3408 3411 3433 C2' U E 6 OK 3435 3431 3434 3453 C2' A E 7 OK 3455 3451 3454 3475 C2' U E 8 OK 3477 3473 3476 3495 C2' G E 9 OK 3497 3493 3496 3518 C2' G E 10 OK 3520 3516 3519 3541 C2' C E 11 OK 3543 3539 3542 3561 C2' G E 12 OK 3563 3559 3562 3584 C2' C E 13 OK 3586 3582 3585 3604 C2' A E 14 OK 3606 3602 3605 3626 C2' G E 15 OK 3628 3624 3627 3649 C2' U E 16 OK 3651 3647 3650 3669 C2' G E 18 OK 3671 3667 3670 3692 C2' G E 19 OK 3694 3690 3693 3715 C2' U E 20 OK 3717 3713 3716 3735 C2' A E 21 OK 3737 3733 3736 3757 C2' G E 22 OK 3759 3755 3758 3780 C2' C E 23 OK 3782 3778 3781 3800 C2' G E 24 OK 3802 3798 3801 3823 C2' C E 25 OK 3825 3821 3824 3843 C2' A E 26 OK 3845 3841 3844 3865 C2' G E 27 OK 3867 3863 3866 3888 C2' C E 28 OK 3890 3886 3889 3908 C2' A E 29 OK 3910 3906 3909 3930 C2' G E 30 OK 3932 3928 3931 3953 C2' A E 31 OK 3955 3951 3954 3975 C2' U E 32 OK 3977 3973 3976 3995 C2' U E 33 OK 3997 3993 3996 4015 C2' G E 34 OK 4017 4013 4016 4038 C2' C E 35 OK 4040 4036 4039 4058 C2' A E 36 OK 4060 4056 4059 4080 C2' A E 37 OK 4082 4078 4081 4102 C2' A E 38 OK 4104 4100 4103 4124 C2' U E 39 OK 4126 4122 4125 4144 C2' C E 40 OK 4146 4142 4145 4164 C2' U E 41 OK 4166 4162 4165 4184 C2' G E 42 OK 4186 4182 4185 4207 C2' U E 43 OK 4209 4205 4208 4227 C2' U E 44 OK 4229 4225 4228 4247 C2' G E 45 OK 4249 4245 4248 4270 C2' G E 46 OK 4272 4268 4271 4293 C2' U E 47 OK 4295 4291 4294 4313 C2' C E 48 OK 4315 4311 4314 4333 C2' C E 49 OK 4335 4331 4334 4353 C2' U E 50 OK 4355 4351 4354 4373 C2' U E 51 OK 4375 4371 4374 4393 C2' A E 52 OK 4395 4391 4394 4415 C2' G E 53 OK 4417 4413 4416 4438 C2' U E 54 OK 4440 4436 4439 4458 C2' U E 55 OK 4460 4456 4459 4478 C2' C E 56 OK 4480 4476 4479 4498 C2' G E 57 OK 4500 4496 4499 4521 C2' A E 58 OK 4523 4519 4522 4543 C2' U E 59 OK 4545 4541 4544 4563 C2' C E 60 OK 4565 4561 4564 4583 C2' C E 61 OK 4585 4581 4584 4603 C2' U E 62 OK 4605 4601 4604 4623 C2' G E 63 OK 4625 4621 4624 4646 C2' A E 64 OK 4648 4644 4647 4668 C2' G E 65 OK 4670 4666 4669 4691 C2' U E 66 OK 4693 4689 4692 4711 C2' G E 67 OK 4713 4709 4712 4734 C2' C E 68 OK 4736 4732 4735 4754 C2' G E 69 OK 4756 4752 4755 4777 C2' A E 70 OK 4779 4775 4778 4799 C2' G E 71 OK 4801 4797 4800 8163 C2' C F 2 OK 8165 8161 8164 8183 C2' U F 3 OK 8185 8181 8184 8203 C2' C F 4 OK 8205 8201 8204 8223 C2' G F 5 OK 8225 8221 8224 8246 C2' U F 6 OK 8248 8244 8247 8266 C2' A F 7 OK 8268 8264 8267 8288 C2' U F 8 OK 8290 8286 8289 8308 C2' G F 9 OK 8310 8306 8309 8331 C2' G F 10 OK 8333 8329 8332 8354 C2' C F 11 OK 8356 8352 8355 8374 C2' G F 12 OK 8376 8372 8375 8397 C2' C F 13 OK 8399 8395 8398 8417 C2' A F 14 OK 8419 8415 8418 8439 C2' G F 15 OK 8441 8437 8440 8462 C2' U F 16 OK 8464 8460 8463 8482 C2' G F 18 OK 8484 8480 8483 8505 C2' G F 19 OK 8507 8503 8506 8528 C2' U F 20 OK 8530 8526 8529 8548 C2' A F 21 OK 8550 8546 8549 8570 C2' G F 22 OK 8572 8568 8571 8593 C2' C F 23 OK 8595 8591 8594 8613 C2' G F 24 OK 8615 8611 8614 8636 C2' C F 25 OK 8638 8634 8637 8656 C2' A F 26 OK 8658 8654 8657 8678 C2' G F 27 OK 8680 8676 8679 8701 C2' C F 28 OK 8703 8699 8702 8721 C2' A F 29 OK 8723 8719 8722 8743 C2' G F 30 OK 8745 8741 8744 8766 C2' A F 31 OK 8768 8764 8767 8788 C2' U F 32 OK 8790 8786 8789 8808 C2' U F 33 OK 8810 8806 8809 8828 C2' G F 34 OK 8830 8826 8829 8851 C2' C F 35 OK 8853 8849 8852 8871 C2' A F 36 OK 8873 8869 8872 8893 C2' A F 37 OK 8895 8891 8894 8915 C2' A F 38 OK 8917 8913 8916 8937 C2' U F 39 OK 8939 8935 8938 8957 C2' C F 40 OK 8959 8955 8958 8977 C2' U F 41 OK 8979 8975 8978 8997 C2' G F 42 OK 8999 8995 8998 9020 C2' U F 43 OK 9022 9018 9021 9040 C2' U F 44 OK 9042 9038 9041 9060 C2' G F 45 OK 9062 9058 9061 9083 C2' G F 46 OK 9085 9081 9084 9106 C2' U F 47 OK 9108 9104 9107 9126 C2' C F 48 OK 9128 9124 9127 9146 C2' C F 49 OK 9148 9144 9147 9166 C2' U F 50 OK 9168 9164 9167 9186 C2' U F 51 OK 9188 9184 9187 9206 C2' A F 52 OK 9208 9204 9207 9228 C2' G F 53 OK 9230 9226 9229 9251 C2' U F 54 OK 9253 9249 9252 9271 C2' U F 55 OK 9273 9269 9272 9291 C2' C F 56 OK 9293 9289 9292 9311 C2' G F 57 OK 9313 9309 9312 9334 C2' A F 58 OK 9336 9332 9335 9356 C2' U F 59 OK 9358 9354 9357 9376 C2' C F 60 OK 9378 9374 9377 9396 C2' C F 61 OK 9398 9394 9397 9416 C2' U F 62 OK 9418 9414 9417 9436 C2' G F 63 OK 9438 9434 9437 9459 C2' A F 64 OK 9461 9457 9460 9481 C2' G F 65 OK 9483 9479 9482 9504 C2' U F 66 OK 9506 9502 9505 9524 C2' G F 67 OK 9526 9522 9525 9547 C2' C F 68 OK 9549 9545 9548 9567 C2' G F 69 OK 9569 9565 9568 9590 C2' A F 70 OK 9592 9588 9591 9612 C2' G F 71 OK 9614 9610 9613 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 3348 C3' C E 2 OK 3346 3349 3350 3368 C3' U E 3 OK 3366 3369 3370 3388 C3' C E 4 OK 3386 3389 3390 3408 C3' G E 5 OK 3406 3409 3410 3431 C3' U E 6 OK 3429 3432 3433 3451 C3' A E 7 OK 3449 3452 3453 3473 C3' U E 8 OK 3471 3474 3475 3493 C3' G E 9 OK 3491 3494 3495 3516 C3' G E 10 OK 3514 3517 3518 3539 C3' C E 11 OK 3537 3540 3541 3559 C3' G E 12 OK 3557 3560 3561 3582 C3' C E 13 OK 3580 3583 3584 3602 C3' A E 14 OK 3600 3603 3604 3624 C3' G E 15 OK 3622 3625 3626 3647 C3' U E 16 OK 3645 3648 3649 3667 C3' G E 18 OK 3665 3668 3669 3690 C3' G E 19 OK 3688 3691 3692 3713 C3' U E 20 OK 3711 3714 3715 3733 C3' A E 21 OK 3731 3734 3735 3755 C3' G E 22 OK 3753 3756 3757 3778 C3' C E 23 OK 3776 3779 3780 3798 C3' G E 24 OK 3796 3799 3800 3821 C3' C E 25 OK 3819 3822 3823 3841 C3' A E 26 OK 3839 3842 3843 3863 C3' G E 27 OK 3861 3864 3865 3886 C3' C E 28 OK 3884 3887 3888 3906 C3' A E 29 OK 3904 3907 3908 3928 C3' G E 30 OK 3926 3929 3930 3951 C3' A E 31 OK 3949 3952 3953 3973 C3' U E 32 OK 3971 3974 3975 3993 C3' U E 33 OK 3991 3994 3995 4013 C3' G E 34 OK 4011 4014 4015 4036 C3' C E 35 OK 4034 4037 4038 4056 C3' A E 36 OK 4054 4057 4058 4078 C3' A E 37 OK 4076 4079 4080 4100 C3' A E 38 OK 4098 4101 4102 4122 C3' U E 39 OK 4120 4123 4124 4142 C3' C E 40 OK 4140 4143 4144 4162 C3' U E 41 OK 4160 4163 4164 4182 C3' G E 42 OK 4180 4183 4184 4205 C3' U E 43 OK 4203 4206 4207 4225 C3' U E 44 OK 4223 4226 4227 4245 C3' G E 45 OK 4243 4246 4247 4268 C3' G E 46 OK 4266 4269 4270 4291 C3' U E 47 OK 4289 4292 4293 4311 C3' C E 48 OK 4309 4312 4313 4331 C3' C E 49 OK 4329 4332 4333 4351 C3' U E 50 OK 4349 4352 4353 4371 C3' U E 51 OK 4369 4372 4373 4391 C3' A E 52 OK 4389 4392 4393 4413 C3' G E 53 OK 4411 4414 4415 4436 C3' U E 54 OK 4434 4437 4438 4456 C3' U E 55 OK 4454 4457 4458 4476 C3' C E 56 OK 4474 4477 4478 4496 C3' G E 57 OK 4494 4497 4498 4519 C3' A E 58 OK 4517 4520 4521 4541 C3' U E 59 OK 4539 4542 4543 4561 C3' C E 60 OK 4559 4562 4563 4581 C3' C E 61 OK 4579 4582 4583 4601 C3' U E 62 OK 4599 4602 4603 4621 C3' G E 63 OK 4619 4622 4623 4644 C3' A E 64 OK 4642 4645 4646 4666 C3' G E 65 OK 4664 4667 4668 4689 C3' U E 66 OK 4687 4690 4691 4709 C3' G E 67 OK 4707 4710 4711 4732 C3' C E 68 OK 4730 4733 4734 4752 C3' G E 69 OK 4750 4753 4754 4775 C3' A E 70 OK 4773 4776 4777 4797 C3' G E 71 OK 4795 4798 4799 8161 C3' C F 2 OK 8159 8162 8163 8181 C3' U F 3 OK 8179 8182 8183 8201 C3' C F 4 OK 8199 8202 8203 8221 C3' G F 5 OK 8219 8222 8223 8244 C3' U F 6 OK 8242 8245 8246 8264 C3' A F 7 OK 8262 8265 8266 8286 C3' U F 8 OK 8284 8287 8288 8306 C3' G F 9 OK 8304 8307 8308 8329 C3' G F 10 OK 8327 8330 8331 8352 C3' C F 11 OK 8350 8353 8354 8372 C3' G F 12 OK 8370 8373 8374 8395 C3' C F 13 OK 8393 8396 8397 8415 C3' A F 14 OK 8413 8416 8417 8437 C3' G F 15 OK 8435 8438 8439 8460 C3' U F 16 OK 8458 8461 8462 8480 C3' G F 18 OK 8478 8481 8482 8503 C3' G F 19 OK 8501 8504 8505 8526 C3' U F 20 OK 8524 8527 8528 8546 C3' A F 21 OK 8544 8547 8548 8568 C3' G F 22 OK 8566 8569 8570 8591 C3' C F 23 OK 8589 8592 8593 8611 C3' G F 24 OK 8609 8612 8613 8634 C3' C F 25 OK 8632 8635 8636 8654 C3' A F 26 OK 8652 8655 8656 8676 C3' G F 27 OK 8674 8677 8678 8699 C3' C F 28 OK 8697 8700 8701 8719 C3' A F 29 OK 8717 8720 8721 8741 C3' G F 30 OK 8739 8742 8743 8764 C3' A F 31 OK 8762 8765 8766 8786 C3' U F 32 OK 8784 8787 8788 8806 C3' U F 33 OK 8804 8807 8808 8826 C3' G F 34 OK 8824 8827 8828 8849 C3' C F 35 OK 8847 8850 8851 8869 C3' A F 36 OK 8867 8870 8871 8891 C3' A F 37 OK 8889 8892 8893 8913 C3' A F 38 OK 8911 8914 8915 8935 C3' U F 39 OK 8933 8936 8937 8955 C3' C F 40 OK 8953 8956 8957 8975 C3' U F 41 OK 8973 8976 8977 8995 C3' G F 42 OK 8993 8996 8997 9018 C3' U F 43 OK 9016 9019 9020 9038 C3' U F 44 OK 9036 9039 9040 9058 C3' G F 45 OK 9056 9059 9060 9081 C3' G F 46 OK 9079 9082 9083 9104 C3' U F 47 OK 9102 9105 9106 9124 C3' C F 48 OK 9122 9125 9126 9144 C3' C F 49 OK 9142 9145 9146 9164 C3' U F 50 OK 9162 9165 9166 9184 C3' U F 51 OK 9182 9185 9186 9204 C3' A F 52 OK 9202 9205 9206 9226 C3' G F 53 OK 9224 9227 9228 9249 C3' U F 54 OK 9247 9250 9251 9269 C3' U F 55 OK 9267 9270 9271 9289 C3' C F 56 OK 9287 9290 9291 9309 C3' G F 57 OK 9307 9310 9311 9332 C3' A F 58 OK 9330 9333 9334 9354 C3' U F 59 OK 9352 9355 9356 9374 C3' C F 60 OK 9372 9375 9376 9394 C3' C F 61 OK 9392 9395 9396 9414 C3' U F 62 OK 9412 9415 9416 9434 C3' G F 63 OK 9432 9435 9436 9457 C3' A F 64 OK 9455 9458 9459 9479 C3' G F 65 OK 9477 9480 9481 9502 C3' U F 66 OK 9500 9503 9504 9522 C3' G F 67 OK 9520 9523 9524 9545 C3' C F 68 OK 9543 9546 9547 9565 C3' G F 69 OK 9563 9566 9567 9588 C3' A F 70 OK 9586 9589 9590 9610 C3' G F 71 OK 9608 9611 9612 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 3346 C4' C E 2 OK 3348 3345 3347 3366 C4' U E 3 OK 3368 3365 3367 3386 C4' C E 4 OK 3388 3385 3387 3406 C4' G E 5 OK 3408 3405 3407 3429 C4' U E 6 OK 3431 3428 3430 3449 C4' A E 7 OK 3451 3448 3450 3471 C4' U E 8 OK 3473 3470 3472 3491 C4' G E 9 OK 3493 3490 3492 3514 C4' G E 10 OK 3516 3513 3515 3537 C4' C E 11 OK 3539 3536 3538 3557 C4' G E 12 OK 3559 3556 3558 3580 C4' C E 13 OK 3582 3579 3581 3600 C4' A E 14 OK 3602 3599 3601 3622 C4' G E 15 OK 3624 3621 3623 3645 C4' U E 16 OK 3647 3644 3646 3665 C4' G E 18 OK 3667 3664 3666 3688 C4' G E 19 OK 3690 3687 3689 3711 C4' U E 20 OK 3713 3710 3712 3731 C4' A E 21 OK 3733 3730 3732 3753 C4' G E 22 OK 3755 3752 3754 3776 C4' C E 23 OK 3778 3775 3777 3796 C4' G E 24 OK 3798 3795 3797 3819 C4' C E 25 OK 3821 3818 3820 3839 C4' A E 26 OK 3841 3838 3840 3861 C4' G E 27 OK 3863 3860 3862 3884 C4' C E 28 OK 3886 3883 3885 3904 C4' A E 29 OK 3906 3903 3905 3926 C4' G E 30 OK 3928 3925 3927 3949 C4' A E 31 OK 3951 3948 3950 3971 C4' U E 32 OK 3973 3970 3972 3991 C4' U E 33 OK 3993 3990 3992 4011 C4' G E 34 OK 4013 4010 4012 4034 C4' C E 35 OK 4036 4033 4035 4054 C4' A E 36 OK 4056 4053 4055 4076 C4' A E 37 OK 4078 4075 4077 4098 C4' A E 38 OK 4100 4097 4099 4120 C4' U E 39 OK 4122 4119 4121 4140 C4' C E 40 OK 4142 4139 4141 4160 C4' U E 41 OK 4162 4159 4161 4180 C4' G E 42 OK 4182 4179 4181 4203 C4' U E 43 OK 4205 4202 4204 4223 C4' U E 44 OK 4225 4222 4224 4243 C4' G E 45 OK 4245 4242 4244 4266 C4' G E 46 OK 4268 4265 4267 4289 C4' U E 47 OK 4291 4288 4290 4309 C4' C E 48 OK 4311 4308 4310 4329 C4' C E 49 OK 4331 4328 4330 4349 C4' U E 50 OK 4351 4348 4350 4369 C4' U E 51 OK 4371 4368 4370 4389 C4' A E 52 OK 4391 4388 4390 4411 C4' G E 53 OK 4413 4410 4412 4434 C4' U E 54 OK 4436 4433 4435 4454 C4' U E 55 OK 4456 4453 4455 4474 C4' C E 56 OK 4476 4473 4475 4494 C4' G E 57 OK 4496 4493 4495 4517 C4' A E 58 OK 4519 4516 4518 4539 C4' U E 59 OK 4541 4538 4540 4559 C4' C E 60 OK 4561 4558 4560 4579 C4' C E 61 OK 4581 4578 4580 4599 C4' U E 62 OK 4601 4598 4600 4619 C4' G E 63 OK 4621 4618 4620 4642 C4' A E 64 OK 4644 4641 4643 4664 C4' G E 65 OK 4666 4663 4665 4687 C4' U E 66 OK 4689 4686 4688 4707 C4' G E 67 OK 4709 4706 4708 4730 C4' C E 68 OK 4732 4729 4731 4750 C4' G E 69 OK 4752 4749 4751 4773 C4' A E 70 OK 4775 4772 4774 4795 C4' G E 71 OK 4797 4794 4796 8159 C4' C F 2 OK 8161 8158 8160 8179 C4' U F 3 OK 8181 8178 8180 8199 C4' C F 4 OK 8201 8198 8200 8219 C4' G F 5 OK 8221 8218 8220 8242 C4' U F 6 OK 8244 8241 8243 8262 C4' A F 7 OK 8264 8261 8263 8284 C4' U F 8 OK 8286 8283 8285 8304 C4' G F 9 OK 8306 8303 8305 8327 C4' G F 10 OK 8329 8326 8328 8350 C4' C F 11 OK 8352 8349 8351 8370 C4' G F 12 OK 8372 8369 8371 8393 C4' C F 13 OK 8395 8392 8394 8413 C4' A F 14 OK 8415 8412 8414 8435 C4' G F 15 OK 8437 8434 8436 8458 C4' U F 16 OK 8460 8457 8459 8478 C4' G F 18 OK 8480 8477 8479 8501 C4' G F 19 OK 8503 8500 8502 8524 C4' U F 20 OK 8526 8523 8525 8544 C4' A F 21 OK 8546 8543 8545 8566 C4' G F 22 OK 8568 8565 8567 8589 C4' C F 23 OK 8591 8588 8590 8609 C4' G F 24 OK 8611 8608 8610 8632 C4' C F 25 OK 8634 8631 8633 8652 C4' A F 26 OK 8654 8651 8653 8674 C4' G F 27 OK 8676 8673 8675 8697 C4' C F 28 OK 8699 8696 8698 8717 C4' A F 29 OK 8719 8716 8718 8739 C4' G F 30 OK 8741 8738 8740 8762 C4' A F 31 OK 8764 8761 8763 8784 C4' U F 32 OK 8786 8783 8785 8804 C4' U F 33 OK 8806 8803 8805 8824 C4' G F 34 OK 8826 8823 8825 8847 C4' C F 35 OK 8849 8846 8848 8867 C4' A F 36 OK 8869 8866 8868 8889 C4' A F 37 OK 8891 8888 8890 8911 C4' A F 38 OK 8913 8910 8912 8933 C4' U F 39 OK 8935 8932 8934 8953 C4' C F 40 OK 8955 8952 8954 8973 C4' U F 41 OK 8975 8972 8974 8993 C4' G F 42 OK 8995 8992 8994 9016 C4' U F 43 OK 9018 9015 9017 9036 C4' U F 44 OK 9038 9035 9037 9056 C4' G F 45 OK 9058 9055 9057 9079 C4' G F 46 OK 9081 9078 9080 9102 C4' U F 47 OK 9104 9101 9103 9122 C4' C F 48 OK 9124 9121 9123 9142 C4' C F 49 OK 9144 9141 9143 9162 C4' U F 50 OK 9164 9161 9163 9182 C4' U F 51 OK 9184 9181 9183 9202 C4' A F 52 OK 9204 9201 9203 9224 C4' G F 53 OK 9226 9223 9225 9247 C4' U F 54 OK 9249 9246 9248 9267 C4' U F 55 OK 9269 9266 9268 9287 C4' C F 56 OK 9289 9286 9288 9307 C4' G F 57 OK 9309 9306 9308 9330 C4' A F 58 OK 9332 9329 9331 9352 C4' U F 59 OK 9354 9351 9353 9372 C4' C F 60 OK 9374 9371 9373 9392 C4' C F 61 OK 9394 9391 9393 9412 C4' U F 62 OK 9414 9411 9413 9432 C4' G F 63 OK 9434 9431 9433 9455 C4' A F 64 OK 9457 9454 9456 9477 C4' G F 65 OK 9479 9476 9478 9500 C4' U F 66 OK 9502 9499 9501 9520 C4' G F 67 OK 9522 9519 9521 9543 C4' C F 68 OK 9545 9542 9544 9563 C4' G F 69 OK 9565 9562 9564 9586 C4' A F 70 OK 9588 9585 9587 9608 C4' G F 71 OK 9610 9607 9609 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 3345 C5' C E 2 3344 3346 3365 C5' U E 3 3364 3366 3385 C5' C E 4 3384 3386 3405 C5' G E 5 3404 3406 3428 C5' U E 6 3427 3429 3448 C5' A E 7 3447 3449 3470 C5' U E 8 3469 3471 3490 C5' G E 9 3489 3491 3513 C5' G E 10 3512 3514 3536 C5' C E 11 3535 3537 3556 C5' G E 12 3555 3557 3579 C5' C E 13 3578 3580 3599 C5' A E 14 3598 3600 3621 C5' G E 15 3620 3622 3644 C5' U E 16 3643 3645 3664 C5' G E 18 3663 3665 3687 C5' G E 19 3686 3688 3710 C5' U E 20 3709 3711 3730 C5' A E 21 3729 3731 3752 C5' G E 22 3751 3753 3775 C5' C E 23 3774 3776 3795 C5' G E 24 3794 3796 3818 C5' C E 25 3817 3819 3838 C5' A E 26 3837 3839 3860 C5' G E 27 3859 3861 3883 C5' C E 28 3882 3884 3903 C5' A E 29 3902 3904 3925 C5' G E 30 3924 3926 3948 C5' A E 31 3947 3949 3970 C5' U E 32 3969 3971 3990 C5' U E 33 3989 3991 4010 C5' G E 34 4009 4011 4033 C5' C E 35 4032 4034 4053 C5' A E 36 4052 4054 4075 C5' A E 37 4074 4076 4097 C5' A E 38 4096 4098 4119 C5' U E 39 4118 4120 4139 C5' C E 40 4138 4140 4159 C5' U E 41 4158 4160 4179 C5' G E 42 4178 4180 4202 C5' U E 43 4201 4203 4222 C5' U E 44 4221 4223 4242 C5' G E 45 4241 4243 4265 C5' G E 46 4264 4266 4288 C5' U E 47 4287 4289 4308 C5' C E 48 4307 4309 4328 C5' C E 49 4327 4329 4348 C5' U E 50 4347 4349 4368 C5' U E 51 4367 4369 4388 C5' A E 52 4387 4389 4410 C5' G E 53 4409 4411 4433 C5' U E 54 4432 4434 4453 C5' U E 55 4452 4454 4473 C5' C E 56 4472 4474 4493 C5' G E 57 4492 4494 4516 C5' A E 58 4515 4517 4538 C5' U E 59 4537 4539 4558 C5' C E 60 4557 4559 4578 C5' C E 61 4577 4579 4598 C5' U E 62 4597 4599 4618 C5' G E 63 4617 4619 4641 C5' A E 64 4640 4642 4663 C5' G E 65 4662 4664 4686 C5' U E 66 4685 4687 4706 C5' G E 67 4705 4707 4729 C5' C E 68 4728 4730 4749 C5' G E 69 4748 4750 4772 C5' A E 70 4771 4773 4794 C5' G E 71 4793 4795 8158 C5' C F 2 8157 8159 8178 C5' U F 3 8177 8179 8198 C5' C F 4 8197 8199 8218 C5' G F 5 8217 8219 8241 C5' U F 6 8240 8242 8261 C5' A F 7 8260 8262 8283 C5' U F 8 8282 8284 8303 C5' G F 9 8302 8304 8326 C5' G F 10 8325 8327 8349 C5' C F 11 8348 8350 8369 C5' G F 12 8368 8370 8392 C5' C F 13 8391 8393 8412 C5' A F 14 8411 8413 8434 C5' G F 15 8433 8435 8457 C5' U F 16 8456 8458 8477 C5' G F 18 8476 8478 8500 C5' G F 19 8499 8501 8523 C5' U F 20 8522 8524 8543 C5' A F 21 8542 8544 8565 C5' G F 22 8564 8566 8588 C5' C F 23 8587 8589 8608 C5' G F 24 8607 8609 8631 C5' C F 25 8630 8632 8651 C5' A F 26 8650 8652 8673 C5' G F 27 8672 8674 8696 C5' C F 28 8695 8697 8716 C5' A F 29 8715 8717 8738 C5' G F 30 8737 8739 8761 C5' A F 31 8760 8762 8783 C5' U F 32 8782 8784 8803 C5' U F 33 8802 8804 8823 C5' G F 34 8822 8824 8846 C5' C F 35 8845 8847 8866 C5' A F 36 8865 8867 8888 C5' A F 37 8887 8889 8910 C5' A F 38 8909 8911 8932 C5' U F 39 8931 8933 8952 C5' C F 40 8951 8953 8972 C5' U F 41 8971 8973 8992 C5' G F 42 8991 8993 9015 C5' U F 43 9014 9016 9035 C5' U F 44 9034 9036 9055 C5' G F 45 9054 9056 9078 C5' G F 46 9077 9079 9101 C5' U F 47 9100 9102 9121 C5' C F 48 9120 9122 9141 C5' C F 49 9140 9142 9161 C5' U F 50 9160 9162 9181 C5' U F 51 9180 9182 9201 C5' A F 52 9200 9202 9223 C5' G F 53 9222 9224 9246 C5' U F 54 9245 9247 9266 C5' U F 55 9265 9267 9286 C5' C F 56 9285 9287 9306 C5' G F 57 9305 9307 9329 C5' A F 58 9328 9330 9351 C5' U F 59 9350 9352 9371 C5' C F 60 9370 9372 9391 C5' C F 61 9390 9392 9411 C5' U F 62 9410 9412 9431 C5' G F 63 9430 9432 9454 C5' A F 64 9453 9455 9476 C5' G F 65 9475 9477 9499 C5' U F 66 9498 9500 9519 C5' G F 67 9518 9520 9542 C5' C F 68 9541 9543 9562 C5' G F 69 9561 9563 9585 C5' A F 70 9584 9586 9607 C5' G F 71 9606 9608 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 3341 P C E 2 OK OK 3342 3343 3344 3361 P U E 3 distorted distorted 3349 3362 3363 3364 3381 P C E 4 distorted distorted 3369 3382 3383 3384 3401 P G E 5 distorted distorted 3389 3402 3403 3404 3424 P U E 6 distorted distorted 3409 3425 3426 3427 3444 P A E 7 distorted distorted 3432 3445 3446 3447 3466 P U E 8 distorted distorted 3452 3467 3468 3469 3486 P G E 9 distorted distorted 3474 3487 3488 3489 3509 P G E 10 distorted distorted 3494 3510 3511 3512 3532 P C E 11 distorted distorted 3517 3533 3534 3535 3552 P G E 12 distorted distorted 3540 3553 3554 3555 3575 P C E 13 distorted distorted 3560 3576 3577 3578 3595 P A E 14 distorted distorted 3583 3596 3597 3598 3617 P G E 15 distorted distorted 3603 3618 3619 3620 3640 P U E 16 distorted distorted 3625 3641 3642 3643 3660 P G E 18 distorted distorted 3648 3661 3662 3663 3683 P G E 19 distorted distorted 3668 3684 3685 3686 3706 P U E 20 distorted distorted 3691 3707 3708 3709 3726 P A E 21 distorted distorted 3714 3727 3728 3729 3748 P G E 22 distorted distorted 3734 3749 3750 3751 3771 P C E 23 distorted distorted 3756 3772 3773 3774 3791 P G E 24 distorted distorted 3779 3792 3793 3794 3814 P C E 25 distorted distorted 3799 3815 3816 3817 3834 P A E 26 distorted distorted 3822 3835 3836 3837 3856 P G E 27 distorted distorted 3842 3857 3858 3859 3879 P C E 28 distorted distorted 3864 3880 3881 3882 3899 P A E 29 distorted distorted 3887 3900 3901 3902 3921 P G E 30 distorted distorted 3907 3922 3923 3924 3944 P A E 31 distorted distorted 3929 3945 3946 3947 3966 P U E 32 distorted distorted 3952 3967 3968 3969 3986 P U E 33 distorted distorted 3974 3987 3988 3989 4006 P G E 34 distorted distorted 3994 4007 4008 4009 4029 P C E 35 distorted distorted 4014 4030 4031 4032 4049 P A E 36 distorted distorted 4037 4050 4051 4052 4071 P A E 37 distorted distorted 4057 4072 4073 4074 4093 P A E 38 distorted distorted 4079 4094 4095 4096 4115 P U E 39 distorted distorted 4101 4116 4117 4118 4135 P C E 40 distorted distorted 4123 4136 4137 4138 4155 P U E 41 distorted distorted 4143 4156 4157 4158 4175 P G E 42 distorted distorted 4163 4176 4177 4178 4198 P U E 43 distorted distorted 4183 4199 4200 4201 4218 P U E 44 distorted distorted 4206 4219 4220 4221 4238 P G E 45 distorted distorted 4226 4239 4240 4241 4261 P G E 46 distorted distorted 4246 4262 4263 4264 4284 P U E 47 distorted distorted 4269 4285 4286 4287 4304 P C E 48 distorted distorted 4292 4305 4306 4307 4324 P C E 49 distorted distorted 4312 4325 4326 4327 4344 P U E 50 distorted distorted 4332 4345 4346 4347 4364 P U E 51 distorted distorted 4352 4365 4366 4367 4384 P A E 52 distorted distorted 4372 4385 4386 4387 4406 P G E 53 distorted distorted 4392 4407 4408 4409 4429 P U E 54 distorted distorted 4414 4430 4431 4432 4449 P U E 55 distorted distorted 4437 4450 4451 4452 4469 P C E 56 distorted distorted 4457 4470 4471 4472 4489 P G E 57 distorted distorted 4477 4490 4491 4492 4512 P A E 58 distorted distorted 4497 4513 4514 4515 4534 P U E 59 distorted distorted 4520 4535 4536 4537 4554 P C E 60 distorted distorted 4542 4555 4556 4557 4574 P C E 61 distorted distorted 4562 4575 4576 4577 4594 P U E 62 distorted distorted 4582 4595 4596 4597 4614 P G E 63 distorted distorted 4602 4615 4616 4617 4637 P A E 64 distorted distorted 4622 4638 4639 4640 4659 P G E 65 distorted distorted 4645 4660 4661 4662 4682 P U E 66 distorted distorted 4667 4683 4684 4685 4702 P G E 67 distorted distorted 4690 4703 4704 4705 4725 P C E 68 distorted distorted 4710 4726 4727 4728 4745 P G E 69 distorted distorted 4733 4746 4747 4748 4768 P A E 70 distorted distorted 4753 4769 4770 4771 4790 P G E 71 distorted distorted 4776 4791 4792 4793 8154 P C F 2 OK OK 8155 8156 8157 8174 P U F 3 distorted distorted 8162 8175 8176 8177 8194 P C F 4 distorted distorted 8182 8195 8196 8197 8214 P G F 5 distorted distorted 8202 8215 8216 8217 8237 P U F 6 distorted distorted 8222 8238 8239 8240 8257 P A F 7 distorted distorted 8245 8258 8259 8260 8279 P U F 8 distorted distorted 8265 8280 8281 8282 8299 P G F 9 distorted distorted 8287 8300 8301 8302 8322 P G F 10 distorted distorted 8307 8323 8324 8325 8345 P C F 11 distorted distorted 8330 8346 8347 8348 8365 P G F 12 distorted distorted 8353 8366 8367 8368 8388 P C F 13 distorted distorted 8373 8389 8390 8391 8408 P A F 14 distorted distorted 8396 8409 8410 8411 8430 P G F 15 distorted distorted 8416 8431 8432 8433 8453 P U F 16 distorted distorted 8438 8454 8455 8456 8473 P G F 18 distorted distorted 8461 8474 8475 8476 8496 P G F 19 distorted distorted 8481 8497 8498 8499 8519 P U F 20 distorted distorted 8504 8520 8521 8522 8539 P A F 21 distorted distorted 8527 8540 8541 8542 8561 P G F 22 distorted distorted 8547 8562 8563 8564 8584 P C F 23 distorted distorted 8569 8585 8586 8587 8604 P G F 24 distorted distorted 8592 8605 8606 8607 8627 P C F 25 distorted distorted 8612 8628 8629 8630 8647 P A F 26 distorted distorted 8635 8648 8649 8650 8669 P G F 27 distorted distorted 8655 8670 8671 8672 8692 P C F 28 distorted distorted 8677 8693 8694 8695 8712 P A F 29 distorted distorted 8700 8713 8714 8715 8734 P G F 30 distorted distorted 8720 8735 8736 8737 8757 P A F 31 distorted distorted 8742 8758 8759 8760 8779 P U F 32 distorted distorted 8765 8780 8781 8782 8799 P U F 33 distorted distorted 8787 8800 8801 8802 8819 P G F 34 distorted distorted 8807 8820 8821 8822 8842 P C F 35 distorted distorted 8827 8843 8844 8845 8862 P A F 36 distorted distorted 8850 8863 8864 8865 8884 P A F 37 distorted distorted 8870 8885 8886 8887 8906 P A F 38 distorted distorted 8892 8907 8908 8909 8928 P U F 39 distorted distorted 8914 8929 8930 8931 8948 P C F 40 distorted distorted 8936 8949 8950 8951 8968 P U F 41 distorted distorted 8956 8969 8970 8971 8988 P G F 42 distorted distorted 8976 8989 8990 8991 9011 P U F 43 distorted distorted 8996 9012 9013 9014 9031 P U F 44 distorted distorted 9019 9032 9033 9034 9051 P G F 45 distorted distorted 9039 9052 9053 9054 9074 P G F 46 distorted distorted 9059 9075 9076 9077 9097 P U F 47 distorted distorted 9082 9098 9099 9100 9117 P C F 48 distorted distorted 9105 9118 9119 9120 9137 P C F 49 distorted distorted 9125 9138 9139 9140 9157 P U F 50 distorted distorted 9145 9158 9159 9160 9177 P U F 51 distorted distorted 9165 9178 9179 9180 9197 P A F 52 distorted distorted 9185 9198 9199 9200 9219 P G F 53 distorted distorted 9205 9220 9221 9222 9242 P U F 54 distorted distorted 9227 9243 9244 9245 9262 P U F 55 distorted distorted 9250 9263 9264 9265 9282 P C F 56 distorted distorted 9270 9283 9284 9285 9302 P G F 57 distorted distorted 9290 9303 9304 9305 9325 P A F 58 distorted distorted 9310 9326 9327 9328 9347 P U F 59 distorted distorted 9333 9348 9349 9350 9367 P C F 60 distorted distorted 9355 9368 9369 9370 9387 P C F 61 distorted distorted 9375 9388 9389 9390 9407 P U F 62 distorted distorted 9395 9408 9409 9410 9427 P G F 63 distorted distorted 9415 9428 9429 9430 9450 P A F 64 distorted distorted 9435 9451 9452 9453 9472 P G F 65 distorted distorted 9458 9473 9474 9475 9495 P U F 66 distorted distorted 9480 9496 9497 9498 9515 P G F 67 distorted distorted 9503 9516 9517 9518 9538 P C F 68 distorted distorted 9523 9539 9540 9541 9558 P G F 69 distorted distorted 9546 9559 9560 9561 9581 P A F 70 distorted distorted 9566 9582 9583 9584 9603 P G F 71 distorted distorted 9589 9604 9605 9606 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