ID code: '3DHS' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 9 C1' G A 1 beta 4 10 7 32 C1' U A 2 beta 27 33 30 52 C1' U A 3 beta 47 53 50 72 C1' A A 4 beta 67 73 70 94 C1' A A 5 beta 89 95 92 116 C1' U A 6 beta 111 117 114 136 C1' C A 7 beta 131 137 134 156 C1' A A 8 beta 151 157 154 178 C1' U A 9 beta 173 179 176 198 C1' G A 10 beta 193 199 196 221 C1' C A 11 beta 216 222 219 241 C1' U A 12 beta 236 242 239 261 C1' C A 13 beta 256 262 259 281 C1' G A 14 beta 276 282 279 304 C1' G A 15 beta 299 305 302 327 C1' G A 16 beta 322 328 325 350 C1' U A 17 beta 345 351 348 370 C1' A A 18 beta 365 371 368 392 C1' A A 19 beta 387 393 390 414 C1' U A 20 beta 409 415 412 434 C1' C A 21 beta 429 435 432 454 C1' G A 22 beta 449 455 452 477 C1' C A 23 beta 472 478 475 497 C1' U A 24 beta 492 498 495 517 C1' G A 25 beta 512 518 515 540 C1' C A 26 beta 535 541 538 560 C1' G A 27 beta 555 561 558 583 C1' G A 28 beta 578 584 581 606 C1' C A 29 beta 601 607 604 626 C1' C A 30 beta 621 627 624 646 C1' G A 31 beta 641 647 644 669 C1' G A 32 beta 664 670 667 692 C1' U A 33 beta 687 693 690 712 C1' U A 34 beta 707 713 710 732 C1' U A 35 beta 727 733 730 752 C1' C A 36 beta 747 753 750 772 C1' G A 37 beta 767 773 770 795 C1' G A 38 beta 790 796 793 818 C1' C A 39 beta 813 819 816 838 C1' C A 40 beta 833 839 836 858 C1' G A 41 beta 853 859 856 881 C1' U A 42 beta 876 882 879 901 C1' A A 43 beta 896 902 899 923 C1' G A 44 beta 918 924 921 946 C1' A A 45 beta 941 947 944 968 C1' G A 46 beta 963 969 966 991 C1' G A 47 beta 986 992 989 1014 C1' A A 48 beta 1009 1015 1012 1036 C1' A A 49 beta 1031 1037 1034 1058 C1' A A 50 beta 1053 1059 1056 1080 C1' G A 51 beta 1075 1081 1078 1103 C1' U A 52 beta 1098 1104 1101 1123 C1' C A 53 beta 1118 1124 1121 1143 C1' C A 54 beta 1138 1144 1141 1163 C1' A A 55 beta 1158 1164 1161 1185 C1' U A 56 beta 1180 1186 1183 1205 C1' G A 57 beta 1200 1206 1203 1228 C1' C A 58 beta 1223 1229 1226 1248 C1' U A 59 beta 1243 1249 1246 1268 C1' C A 60 beta 1263 1269 1266 1288 C1' G A 61 beta 1283 1289 1286 1311 C1' C A 62 beta 1306 1312 1309 1331 C1' A A 63 beta 1326 1332 1329 1353 C1' C A 64 beta 1348 1354 1351 1373 C1' G A 65 beta 1368 1374 1371 1396 C1' G A 66 beta 1391 1397 1394 1419 C1' U A 67 beta 1414 1420 1417 1439 C1' G A 68 beta 1434 1440 1437 1462 C1' C A 69 beta 1457 1463 1460 1482 C1' U A 70 beta 1477 1483 1480 1502 C1' G A 71 beta 1497 1503 1500 1525 C1' A A 72 beta 1520 1526 1523 1547 C1' G A 73 beta 1542 1548 1545 1570 C1' A A 74 beta 1565 1571 1568 1592 C1' U A 75 beta 1587 1593 1590 1612 C1' G A 76 beta 1607 1613 1610 1635 C1' C A 77 beta 1630 1636 1633 1655 C1' C A 78 beta 1650 1656 1653 1675 C1' C A 79 beta 1670 1676 1673 1695 C1' G A 80 beta 1690 1696 1693 1718 C1' U A 81 beta 1713 1719 1716 1735 C1' G A 250 beta 1730 1736 1733 1758 C1' C A 251 beta 1753 1759 1756 1778 C1' G A 252 beta 1773 1779 1776 1801 C1' A A 253 beta 1796 1802 1799 1823 C1' G A 254 beta 1818 1824 1821 1846 C1' A A 255 beta 1841 1847 1844 1868 C1' A A 256 beta 1863 1869 1866 1890 C1' A A 257 beta 1885 1891 1888 1912 C1' C A 258 beta 1907 1913 1910 1932 C1' C A 259 beta 1927 1933 1930 1952 C1' C A 260 beta 1947 1953 1950 1972 C1' A A 261 beta 1967 1973 1970 1994 C1' A A 262 beta 1989 1995 1992 2016 C1' A A 263 beta 2011 2017 2014 2035 C1' A A 271 beta 2030 2036 2033 2057 C1' G A 272 beta 2052 2058 2055 2080 C1' G A 273 beta 2075 2081 2078 2103 C1' G A 274 beta 2098 2104 2101 2126 C1' G A 275 beta 2121 2127 2124 2149 C1' C A 276 beta 2144 2150 2147 2169 C1' A A 277 beta 2164 2170 2167 2191 C1' C A 278 beta 2186 2192 2189 2211 C1' C A 279 beta 2206 2212 2209 2231 C1' U A 280 beta 2226 2232 2229 2251 C1' U A 281 beta 2246 2252 2249 2271 C1' C A 282 beta 2266 2272 2269 2291 C1' C A 283 beta 2286 2292 2289 2311 C1' C A 284 beta 2306 2312 2309 2331 C1' G A 285 beta 2326 2332 2329 2354 C1' A A 286 beta 2349 2355 2352 2376 C1' A A 287 beta 2371 2377 2374 2398 C1' G A 288 beta 2393 2399 2396 2421 C1' G A 289 beta 2416 2422 2419 2444 C1' A A 290 beta 2439 2445 2442 2466 C1' A A 291 beta 2461 2467 2464 2488 C1' A A 292 beta 2483 2489 2486 2510 C1' U A 293 beta 2505 2511 2508 2530 C1' G A 294 beta 2525 2531 2528 2553 C1' A A 295 beta 2548 2554 2551 2575 C1' A A 296 beta 2570 2576 2573 2597 C1' C A 297 beta 2592 2598 2595 2617 C1' G A 298 beta 2612 2618 2615 2640 C1' G A 299 beta 2635 2641 2638 2663 C1' A A 300 beta 2658 2664 2661 2685 C1' G A 301 beta 2680 2686 2683 2708 C1' G A 302 beta 2703 2709 2706 2731 C1' G A 303 beta 2726 2732 2729 2754 C1' A A 304 beta 2749 2755 2752 2776 C1' A A 305 beta 2771 2777 2774 2798 C1' G A 306 beta 2793 2799 2796 2821 C1' G A 307 beta 2816 2822 2819 2844 C1' A A 308 beta 2839 2845 2842 2866 C1' C A 309 beta 2861 2867 2864 2886 C1' A A 310 beta 2881 2887 2884 2908 C1' G A 311 beta 2903 2909 2906 2931 C1' G A 312 beta 2926 2932 2929 2954 C1' C A 313 beta 2949 2955 2952 2974 C1' G A 314 beta 2969 2975 2972 2997 C1' G A 315 beta 2992 2998 2995 3020 C1' C A 316 beta 3015 3021 3018 3040 C1' G A 317 beta 3035 3041 3038 3063 C1' C A 318 beta 3058 3064 3061 3083 C1' A A 319 beta 3078 3084 3081 3105 C1' U A 320 beta 3100 3106 3103 3125 C1' G A 321 beta 3120 3126 3123 3148 C1' C A 322 beta 3143 3149 3146 3168 C1' A A 323 beta 3163 3169 3166 3190 C1' G A 324 beta 3185 3191 3188 3213 C1' C A 325 beta 3208 3214 3211 3233 C1' C A 326 beta 3228 3234 3231 3253 C1' U A 327 beta 3248 3254 3251 3273 C1' G A 328 beta 3268 3274 3271 3296 C1' U A 329 beta 3291 3297 3294 3316 C1' A A 330 beta 3311 3317 3314 3338 C1' G A 331 beta 3333 3339 3336 3361 C1' A A 332 beta 3356 3362 3359 3383 C1' U A 333 beta 3378 3384 3381 3403 C1' A A 334 beta 3398 3404 3401 3425 C1' G A 335 beta 3420 3426 3423 3448 C1' A A 336 beta 3443 3449 3446 3470 C1' U A 337 beta 3465 3471 3468 3490 C1' G A 338 beta 3485 3491 3488 3513 C1' A A 339 beta 3508 3514 3511 3535 C1' U A 340 beta 3530 3536 3533 3555 C1' U A 341 beta 3550 3556 3553 3575 C1' A A 342 beta 3570 3576 3573 3597 C1' C A 343 beta 3592 3598 3595 3617 C1' C A 344 beta 3612 3618 3615 3637 C1' G A 345 beta 3632 3638 3635 3660 C1' C A 346 beta 3655 3661 3658 3680 C1' C A 347 beta 3675 3681 3678 3700 C1' G A 348 beta 3695 3701 3698 3723 C1' G A 349 beta 3718 3724 3721 3746 C1' A A 350 beta 3741 3747 3744 3768 C1' G A 351 beta 3763 3769 3766 3788 C1' U A 376 beta 3783 3789 3786 3808 C1' A A 377 beta 3803 3809 3806 3830 C1' C A 378 beta 3825 3831 3828 3850 C1' G A 379 beta 3845 3851 3848 3873 C1' A A 380 beta 3868 3874 3871 3895 C1' A A 381 beta 3890 3896 3893 3917 C1' G A 382 beta 3912 3918 3915 3940 C1' G A 383 beta 3935 3941 3938 3963 C1' U A 384 beta 3958 3964 3961 3983 C1' A A 385 beta 3978 3984 3981 4005 C1' C A 386 beta 4000 4006 4003 4025 C1' A A 387 beta 4020 4026 4023 4047 C1' G A 388 beta 4042 4048 4045 4070 C1' A A 389 beta 4065 4071 4068 4092 C1' A A 390 beta 4087 4093 4090 4114 C1' C A 391 beta 4109 4115 4112 4134 C1' A A 392 beta 4129 4135 4132 4156 C1' U A 393 beta 4151 4157 4154 4176 C1' G A 394 beta 4171 4177 4174 4199 C1' G A 395 beta 4194 4200 4197 4222 C1' C A 396 beta 4217 4223 4220 4242 C1' U A 397 beta 4237 4243 4240 4262 C1' U A 398 beta 4257 4263 4260 4282 C1' A A 399 beta 4277 4283 4280 4304 C1' U A 400 beta 4299 4305 4302 4324 C1' A A 401 beta 4319 4325 4322 4346 C1' G A 402 beta 4341 4347 4344 4369 C1' A A 403 beta 4364 4370 4367 4391 C1' G A 404 beta 4386 4392 4389 4414 C1' C A 405 beta 4409 4415 4412 4434 C1' A A 406 beta 4429 4435 4432 4456 C1' U A 407 beta 4451 4457 4454 4476 C1' G A 408 beta 4471 4477 4474 4499 C1' A A 409 beta 4494 4500 4497 4521 C1' U A 410 beta 4516 4522 4519 4541 C1' U A 411 beta 4536 4542 4539 4561 C1' A A 412 beta 4556 4562 4559 4583 C1' A A 413 beta 4578 4584 4581 4605 C1' C A 414 beta 4600 4606 4603 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 7 C2' G A 1 OK 9 5 8 30 C2' U A 2 OK 32 28 31 50 C2' U A 3 OK 52 48 51 70 C2' A A 4 OK 72 68 71 92 C2' A A 5 OK 94 90 93 114 C2' U A 6 OK 116 112 115 134 C2' C A 7 OK 136 132 135 154 C2' A A 8 OK 156 152 155 176 C2' U A 9 OK 178 174 177 196 C2' G A 10 OK 198 194 197 219 C2' C A 11 OK 221 217 220 239 C2' U A 12 OK 241 237 240 259 C2' C A 13 OK 261 257 260 279 C2' G A 14 OK 281 277 280 302 C2' G A 15 OK 304 300 303 325 C2' G A 16 OK 327 323 326 348 C2' U A 17 OK 350 346 349 368 C2' A A 18 OK 370 366 369 390 C2' A A 19 OK 392 388 391 412 C2' U A 20 OK 414 410 413 432 C2' C A 21 OK 434 430 433 452 C2' G A 22 OK 454 450 453 475 C2' C A 23 OK 477 473 476 495 C2' U A 24 OK 497 493 496 515 C2' G A 25 OK 517 513 516 538 C2' C A 26 OK 540 536 539 558 C2' G A 27 OK 560 556 559 581 C2' G A 28 OK 583 579 582 604 C2' C A 29 OK 606 602 605 624 C2' C A 30 OK 626 622 625 644 C2' G A 31 OK 646 642 645 667 C2' G A 32 OK 669 665 668 690 C2' U A 33 OK 692 688 691 710 C2' U A 34 OK 712 708 711 730 C2' U A 35 OK 732 728 731 750 C2' C A 36 OK 752 748 751 770 C2' G A 37 OK 772 768 771 793 C2' G A 38 OK 795 791 794 816 C2' C A 39 OK 818 814 817 836 C2' C A 40 OK 838 834 837 856 C2' G A 41 OK 858 854 857 879 C2' U A 42 OK 881 877 880 899 C2' A A 43 OK 901 897 900 921 C2' G A 44 OK 923 919 922 944 C2' A A 45 OK 946 942 945 966 C2' G A 46 OK 968 964 967 989 C2' G A 47 OK 991 987 990 1012 C2' A A 48 OK 1014 1010 1013 1034 C2' A A 49 OK 1036 1032 1035 1056 C2' A A 50 OK 1058 1054 1057 1078 C2' G A 51 OK 1080 1076 1079 1101 C2' U A 52 OK 1103 1099 1102 1121 C2' C A 53 OK 1123 1119 1122 1141 C2' C A 54 OK 1143 1139 1142 1161 C2' A A 55 OK 1163 1159 1162 1183 C2' U A 56 OK 1185 1181 1184 1203 C2' G A 57 OK 1205 1201 1204 1226 C2' C A 58 OK 1228 1224 1227 1246 C2' U A 59 OK 1248 1244 1247 1266 C2' C A 60 OK 1268 1264 1267 1286 C2' G A 61 OK 1288 1284 1287 1309 C2' C A 62 OK 1311 1307 1310 1329 C2' A A 63 OK 1331 1327 1330 1351 C2' C A 64 OK 1353 1349 1352 1371 C2' G A 65 OK 1373 1369 1372 1394 C2' G A 66 OK 1396 1392 1395 1417 C2' U A 67 OK 1419 1415 1418 1437 C2' G A 68 OK 1439 1435 1438 1460 C2' C A 69 OK 1462 1458 1461 1480 C2' U A 70 OK 1482 1478 1481 1500 C2' G A 71 OK 1502 1498 1501 1523 C2' A A 72 OK 1525 1521 1524 1545 C2' G A 73 OK 1547 1543 1546 1568 C2' A A 74 OK 1570 1566 1569 1590 C2' U A 75 OK 1592 1588 1591 1610 C2' G A 76 OK 1612 1608 1611 1633 C2' C A 77 OK 1635 1631 1634 1653 C2' C A 78 OK 1655 1651 1654 1673 C2' C A 79 OK 1675 1671 1674 1693 C2' G A 80 OK 1695 1691 1694 1716 C2' U A 81 OK 1718 1714 1717 1733 C2' G A 250 OK 1735 1731 1734 1756 C2' C A 251 OK 1758 1754 1757 1776 C2' G A 252 OK 1778 1774 1777 1799 C2' A A 253 OK 1801 1797 1800 1821 C2' G A 254 OK 1823 1819 1822 1844 C2' A A 255 OK 1846 1842 1845 1866 C2' A A 256 OK 1868 1864 1867 1888 C2' A A 257 OK 1890 1886 1889 1910 C2' C A 258 OK 1912 1908 1911 1930 C2' C A 259 OK 1932 1928 1931 1950 C2' C A 260 OK 1952 1948 1951 1970 C2' A A 261 OK 1972 1968 1971 1992 C2' A A 262 OK 1994 1990 1993 2014 C2' A A 263 OK 2016 2012 2015 2033 C2' A A 271 OK 2035 2031 2034 2055 C2' G A 272 OK 2057 2053 2056 2078 C2' G A 273 OK 2080 2076 2079 2101 C2' G A 274 OK 2103 2099 2102 2124 C2' G A 275 OK 2126 2122 2125 2147 C2' C A 276 OK 2149 2145 2148 2167 C2' A A 277 OK 2169 2165 2168 2189 C2' C A 278 OK 2191 2187 2190 2209 C2' C A 279 OK 2211 2207 2210 2229 C2' U A 280 OK 2231 2227 2230 2249 C2' U A 281 OK 2251 2247 2250 2269 C2' C A 282 OK 2271 2267 2270 2289 C2' C A 283 OK 2291 2287 2290 2309 C2' C A 284 OK 2311 2307 2310 2329 C2' G A 285 OK 2331 2327 2330 2352 C2' A A 286 OK 2354 2350 2353 2374 C2' A A 287 OK 2376 2372 2375 2396 C2' G A 288 OK 2398 2394 2397 2419 C2' G A 289 OK 2421 2417 2420 2442 C2' A A 290 OK 2444 2440 2443 2464 C2' A A 291 OK 2466 2462 2465 2486 C2' A A 292 OK 2488 2484 2487 2508 C2' U A 293 OK 2510 2506 2509 2528 C2' G A 294 OK 2530 2526 2529 2551 C2' A A 295 OK 2553 2549 2552 2573 C2' A A 296 OK 2575 2571 2574 2595 C2' C A 297 OK 2597 2593 2596 2615 C2' G A 298 OK 2617 2613 2616 2638 C2' G A 299 OK 2640 2636 2639 2661 C2' A A 300 OK 2663 2659 2662 2683 C2' G A 301 OK 2685 2681 2684 2706 C2' G A 302 OK 2708 2704 2707 2729 C2' G A 303 OK 2731 2727 2730 2752 C2' A A 304 OK 2754 2750 2753 2774 C2' A A 305 OK 2776 2772 2775 2796 C2' G A 306 OK 2798 2794 2797 2819 C2' G A 307 OK 2821 2817 2820 2842 C2' A A 308 OK 2844 2840 2843 2864 C2' C A 309 OK 2866 2862 2865 2884 C2' A A 310 OK 2886 2882 2885 2906 C2' G A 311 OK 2908 2904 2907 2929 C2' G A 312 OK 2931 2927 2930 2952 C2' C A 313 OK 2954 2950 2953 2972 C2' G A 314 OK 2974 2970 2973 2995 C2' G A 315 OK 2997 2993 2996 3018 C2' C A 316 OK 3020 3016 3019 3038 C2' G A 317 OK 3040 3036 3039 3061 C2' C A 318 OK 3063 3059 3062 3081 C2' A A 319 OK 3083 3079 3082 3103 C2' U A 320 OK 3105 3101 3104 3123 C2' G A 321 OK 3125 3121 3124 3146 C2' C A 322 OK 3148 3144 3147 3166 C2' A A 323 OK 3168 3164 3167 3188 C2' G A 324 OK 3190 3186 3189 3211 C2' C A 325 OK 3213 3209 3212 3231 C2' C A 326 OK 3233 3229 3232 3251 C2' U A 327 OK 3253 3249 3252 3271 C2' G A 328 OK 3273 3269 3272 3294 C2' U A 329 OK 3296 3292 3295 3314 C2' A A 330 OK 3316 3312 3315 3336 C2' G A 331 OK 3338 3334 3337 3359 C2' A A 332 OK 3361 3357 3360 3381 C2' U A 333 OK 3383 3379 3382 3401 C2' A A 334 OK 3403 3399 3402 3423 C2' G A 335 OK 3425 3421 3424 3446 C2' A A 336 OK 3448 3444 3447 3468 C2' U A 337 OK 3470 3466 3469 3488 C2' G A 338 OK 3490 3486 3489 3511 C2' A A 339 OK 3513 3509 3512 3533 C2' U A 340 OK 3535 3531 3534 3553 C2' U A 341 OK 3555 3551 3554 3573 C2' A A 342 OK 3575 3571 3574 3595 C2' C A 343 OK 3597 3593 3596 3615 C2' C A 344 OK 3617 3613 3616 3635 C2' G A 345 OK 3637 3633 3636 3658 C2' C A 346 OK 3660 3656 3659 3678 C2' C A 347 OK 3680 3676 3679 3698 C2' G A 348 OK 3700 3696 3699 3721 C2' G A 349 OK 3723 3719 3722 3744 C2' A A 350 OK 3746 3742 3745 3766 C2' G A 351 OK 3768 3764 3767 3786 C2' U A 376 OK 3788 3784 3787 3806 C2' A A 377 OK 3808 3804 3807 3828 C2' C A 378 OK 3830 3826 3829 3848 C2' G A 379 OK 3850 3846 3849 3871 C2' A A 380 OK 3873 3869 3872 3893 C2' A A 381 OK 3895 3891 3894 3915 C2' G A 382 OK 3917 3913 3916 3938 C2' G A 383 OK 3940 3936 3939 3961 C2' U A 384 OK 3963 3959 3962 3981 C2' A A 385 OK 3983 3979 3982 4003 C2' C A 386 OK 4005 4001 4004 4023 C2' A A 387 OK 4025 4021 4024 4045 C2' G A 388 OK 4047 4043 4046 4068 C2' A A 389 OK 4070 4066 4069 4090 C2' A A 390 OK 4092 4088 4091 4112 C2' C A 391 OK 4114 4110 4113 4132 C2' A A 392 OK 4134 4130 4133 4154 C2' U A 393 OK 4156 4152 4155 4174 C2' G A 394 OK 4176 4172 4175 4197 C2' G A 395 OK 4199 4195 4198 4220 C2' C A 396 OK 4222 4218 4221 4240 C2' U A 397 OK 4242 4238 4241 4260 C2' U A 398 OK 4262 4258 4261 4280 C2' A A 399 OK 4282 4278 4281 4302 C2' U A 400 OK 4304 4300 4303 4322 C2' A A 401 OK 4324 4320 4323 4344 C2' G A 402 OK 4346 4342 4345 4367 C2' A A 403 OK 4369 4365 4368 4389 C2' G A 404 OK 4391 4387 4390 4412 C2' C A 405 OK 4414 4410 4413 4432 C2' A A 406 OK 4434 4430 4433 4454 C2' U A 407 OK 4456 4452 4455 4474 C2' G A 408 OK 4476 4472 4475 4497 C2' A A 409 OK 4499 4495 4498 4519 C2' U A 410 OK 4521 4517 4520 4539 C2' U A 411 OK 4541 4537 4540 4559 C2' A A 412 OK 4561 4557 4560 4581 C2' A A 413 OK 4583 4579 4582 4603 C2' C A 414 OK 4605 4601 4604 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 5 C3' G A 1 OK 3 6 7 28 C3' U A 2 OK 26 29 30 48 C3' U A 3 OK 46 49 50 68 C3' A A 4 OK 66 69 70 90 C3' A A 5 OK 88 91 92 112 C3' U A 6 OK 110 113 114 132 C3' C A 7 OK 130 133 134 152 C3' A A 8 OK 150 153 154 174 C3' U A 9 OK 172 175 176 194 C3' G A 10 OK 192 195 196 217 C3' C A 11 OK 215 218 219 237 C3' U A 12 OK 235 238 239 257 C3' C A 13 OK 255 258 259 277 C3' G A 14 OK 275 278 279 300 C3' G A 15 OK 298 301 302 323 C3' G A 16 OK 321 324 325 346 C3' U A 17 OK 344 347 348 366 C3' A A 18 OK 364 367 368 388 C3' A A 19 OK 386 389 390 410 C3' U A 20 OK 408 411 412 430 C3' C A 21 OK 428 431 432 450 C3' G A 22 OK 448 451 452 473 C3' C A 23 OK 471 474 475 493 C3' U A 24 OK 491 494 495 513 C3' G A 25 OK 511 514 515 536 C3' C A 26 OK 534 537 538 556 C3' G A 27 OK 554 557 558 579 C3' G A 28 OK 577 580 581 602 C3' C A 29 OK 600 603 604 622 C3' C A 30 OK 620 623 624 642 C3' G A 31 OK 640 643 644 665 C3' G A 32 OK 663 666 667 688 C3' U A 33 OK 686 689 690 708 C3' U A 34 OK 706 709 710 728 C3' U A 35 OK 726 729 730 748 C3' C A 36 OK 746 749 750 768 C3' G A 37 OK 766 769 770 791 C3' G A 38 OK 789 792 793 814 C3' C A 39 OK 812 815 816 834 C3' C A 40 OK 832 835 836 854 C3' G A 41 OK 852 855 856 877 C3' U A 42 OK 875 878 879 897 C3' A A 43 OK 895 898 899 919 C3' G A 44 OK 917 920 921 942 C3' A A 45 OK 940 943 944 964 C3' G A 46 OK 962 965 966 987 C3' G A 47 OK 985 988 989 1010 C3' A A 48 OK 1008 1011 1012 1032 C3' A A 49 OK 1030 1033 1034 1054 C3' A A 50 OK 1052 1055 1056 1076 C3' G A 51 OK 1074 1077 1078 1099 C3' U A 52 OK 1097 1100 1101 1119 C3' C A 53 OK 1117 1120 1121 1139 C3' C A 54 OK 1137 1140 1141 1159 C3' A A 55 OK 1157 1160 1161 1181 C3' U A 56 OK 1179 1182 1183 1201 C3' G A 57 OK 1199 1202 1203 1224 C3' C A 58 OK 1222 1225 1226 1244 C3' U A 59 OK 1242 1245 1246 1264 C3' C A 60 OK 1262 1265 1266 1284 C3' G A 61 OK 1282 1285 1286 1307 C3' C A 62 OK 1305 1308 1309 1327 C3' A A 63 OK 1325 1328 1329 1349 C3' C A 64 OK 1347 1350 1351 1369 C3' G A 65 OK 1367 1370 1371 1392 C3' G A 66 OK 1390 1393 1394 1415 C3' U A 67 OK 1413 1416 1417 1435 C3' G A 68 OK 1433 1436 1437 1458 C3' C A 69 OK 1456 1459 1460 1478 C3' U A 70 OK 1476 1479 1480 1498 C3' G A 71 OK 1496 1499 1500 1521 C3' A A 72 OK 1519 1522 1523 1543 C3' G A 73 OK 1541 1544 1545 1566 C3' A A 74 OK 1564 1567 1568 1588 C3' U A 75 OK 1586 1589 1590 1608 C3' G A 76 OK 1606 1609 1610 1631 C3' C A 77 OK 1629 1632 1633 1651 C3' C A 78 OK 1649 1652 1653 1671 C3' C A 79 OK 1669 1672 1673 1691 C3' G A 80 OK 1689 1692 1693 1714 C3' U A 81 OK 1712 1715 1716 1731 C3' G A 250 OK 1729 1732 1733 1754 C3' C A 251 OK 1752 1755 1756 1774 C3' G A 252 OK 1772 1775 1776 1797 C3' A A 253 OK 1795 1798 1799 1819 C3' G A 254 OK 1817 1820 1821 1842 C3' A A 255 OK 1840 1843 1844 1864 C3' A A 256 OK 1862 1865 1866 1886 C3' A A 257 OK 1884 1887 1888 1908 C3' C A 258 OK 1906 1909 1910 1928 C3' C A 259 OK 1926 1929 1930 1948 C3' C A 260 OK 1946 1949 1950 1968 C3' A A 261 OK 1966 1969 1970 1990 C3' A A 262 OK 1988 1991 1992 2012 C3' A A 263 OK 2010 2013 2014 2031 C3' A A 271 OK 2029 2032 2033 2053 C3' G A 272 OK 2051 2054 2055 2076 C3' G A 273 OK 2074 2077 2078 2099 C3' G A 274 OK 2097 2100 2101 2122 C3' G A 275 OK 2120 2123 2124 2145 C3' C A 276 OK 2143 2146 2147 2165 C3' A A 277 OK 2163 2166 2167 2187 C3' C A 278 OK 2185 2188 2189 2207 C3' C A 279 OK 2205 2208 2209 2227 C3' U A 280 OK 2225 2228 2229 2247 C3' U A 281 OK 2245 2248 2249 2267 C3' C A 282 OK 2265 2268 2269 2287 C3' C A 283 OK 2285 2288 2289 2307 C3' C A 284 OK 2305 2308 2309 2327 C3' G A 285 OK 2325 2328 2329 2350 C3' A A 286 OK 2348 2351 2352 2372 C3' A A 287 OK 2370 2373 2374 2394 C3' G A 288 OK 2392 2395 2396 2417 C3' G A 289 OK 2415 2418 2419 2440 C3' A A 290 OK 2438 2441 2442 2462 C3' A A 291 OK 2460 2463 2464 2484 C3' A A 292 OK 2482 2485 2486 2506 C3' U A 293 OK 2504 2507 2508 2526 C3' G A 294 OK 2524 2527 2528 2549 C3' A A 295 OK 2547 2550 2551 2571 C3' A A 296 OK 2569 2572 2573 2593 C3' C A 297 OK 2591 2594 2595 2613 C3' G A 298 OK 2611 2614 2615 2636 C3' G A 299 OK 2634 2637 2638 2659 C3' A A 300 OK 2657 2660 2661 2681 C3' G A 301 OK 2679 2682 2683 2704 C3' G A 302 OK 2702 2705 2706 2727 C3' G A 303 OK 2725 2728 2729 2750 C3' A A 304 OK 2748 2751 2752 2772 C3' A A 305 OK 2770 2773 2774 2794 C3' G A 306 OK 2792 2795 2796 2817 C3' G A 307 OK 2815 2818 2819 2840 C3' A A 308 OK 2838 2841 2842 2862 C3' C A 309 OK 2860 2863 2864 2882 C3' A A 310 OK 2880 2883 2884 2904 C3' G A 311 OK 2902 2905 2906 2927 C3' G A 312 OK 2925 2928 2929 2950 C3' C A 313 OK 2948 2951 2952 2970 C3' G A 314 OK 2968 2971 2972 2993 C3' G A 315 OK 2991 2994 2995 3016 C3' C A 316 OK 3014 3017 3018 3036 C3' G A 317 OK 3034 3037 3038 3059 C3' C A 318 OK 3057 3060 3061 3079 C3' A A 319 OK 3077 3080 3081 3101 C3' U A 320 OK 3099 3102 3103 3121 C3' G A 321 OK 3119 3122 3123 3144 C3' C A 322 OK 3142 3145 3146 3164 C3' A A 323 OK 3162 3165 3166 3186 C3' G A 324 OK 3184 3187 3188 3209 C3' C A 325 OK 3207 3210 3211 3229 C3' C A 326 OK 3227 3230 3231 3249 C3' U A 327 OK 3247 3250 3251 3269 C3' G A 328 OK 3267 3270 3271 3292 C3' U A 329 OK 3290 3293 3294 3312 C3' A A 330 OK 3310 3313 3314 3334 C3' G A 331 OK 3332 3335 3336 3357 C3' A A 332 OK 3355 3358 3359 3379 C3' U A 333 OK 3377 3380 3381 3399 C3' A A 334 OK 3397 3400 3401 3421 C3' G A 335 OK 3419 3422 3423 3444 C3' A A 336 OK 3442 3445 3446 3466 C3' U A 337 OK 3464 3467 3468 3486 C3' G A 338 OK 3484 3487 3488 3509 C3' A A 339 OK 3507 3510 3511 3531 C3' U A 340 OK 3529 3532 3533 3551 C3' U A 341 OK 3549 3552 3553 3571 C3' A A 342 OK 3569 3572 3573 3593 C3' C A 343 OK 3591 3594 3595 3613 C3' C A 344 OK 3611 3614 3615 3633 C3' G A 345 OK 3631 3634 3635 3656 C3' C A 346 OK 3654 3657 3658 3676 C3' C A 347 OK 3674 3677 3678 3696 C3' G A 348 OK 3694 3697 3698 3719 C3' G A 349 OK 3717 3720 3721 3742 C3' A A 350 OK 3740 3743 3744 3764 C3' G A 351 OK 3762 3765 3766 3784 C3' U A 376 OK 3782 3785 3786 3804 C3' A A 377 OK 3802 3805 3806 3826 C3' C A 378 OK 3824 3827 3828 3846 C3' G A 379 OK 3844 3847 3848 3869 C3' A A 380 OK 3867 3870 3871 3891 C3' A A 381 OK 3889 3892 3893 3913 C3' G A 382 OK 3911 3914 3915 3936 C3' G A 383 OK 3934 3937 3938 3959 C3' U A 384 OK 3957 3960 3961 3979 C3' A A 385 OK 3977 3980 3981 4001 C3' C A 386 OK 3999 4002 4003 4021 C3' A A 387 OK 4019 4022 4023 4043 C3' G A 388 OK 4041 4044 4045 4066 C3' A A 389 OK 4064 4067 4068 4088 C3' A A 390 OK 4086 4089 4090 4110 C3' C A 391 OK 4108 4111 4112 4130 C3' A A 392 OK 4128 4131 4132 4152 C3' U A 393 OK 4150 4153 4154 4172 C3' G A 394 OK 4170 4173 4174 4195 C3' G A 395 OK 4193 4196 4197 4218 C3' C A 396 OK 4216 4219 4220 4238 C3' U A 397 OK 4236 4239 4240 4258 C3' U A 398 OK 4256 4259 4260 4278 C3' A A 399 OK 4276 4279 4280 4300 C3' U A 400 OK 4298 4301 4302 4320 C3' A A 401 OK 4318 4321 4322 4342 C3' G A 402 OK 4340 4343 4344 4365 C3' A A 403 OK 4363 4366 4367 4387 C3' G A 404 OK 4385 4388 4389 4410 C3' C A 405 OK 4408 4411 4412 4430 C3' A A 406 OK 4428 4431 4432 4452 C3' U A 407 OK 4450 4453 4454 4472 C3' G A 408 OK 4470 4473 4474 4495 C3' A A 409 OK 4493 4496 4497 4517 C3' U A 410 OK 4515 4518 4519 4537 C3' U A 411 OK 4535 4538 4539 4557 C3' A A 412 OK 4555 4558 4559 4579 C3' A A 413 OK 4577 4580 4581 4601 C3' C A 414 OK 4599 4602 4603 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 3 C4' G A 1 OK 5 2 4 26 C4' U A 2 OK 28 25 27 46 C4' U A 3 OK 48 45 47 66 C4' A A 4 OK 68 65 67 88 C4' A A 5 OK 90 87 89 110 C4' U A 6 OK 112 109 111 130 C4' C A 7 OK 132 129 131 150 C4' A A 8 OK 152 149 151 172 C4' U A 9 OK 174 171 173 192 C4' G A 10 OK 194 191 193 215 C4' C A 11 OK 217 214 216 235 C4' U A 12 OK 237 234 236 255 C4' C A 13 OK 257 254 256 275 C4' G A 14 OK 277 274 276 298 C4' G A 15 OK 300 297 299 321 C4' G A 16 OK 323 320 322 344 C4' U A 17 OK 346 343 345 364 C4' A A 18 OK 366 363 365 386 C4' A A 19 OK 388 385 387 408 C4' U A 20 OK 410 407 409 428 C4' C A 21 OK 430 427 429 448 C4' G A 22 OK 450 447 449 471 C4' C A 23 OK 473 470 472 491 C4' U A 24 OK 493 490 492 511 C4' G A 25 OK 513 510 512 534 C4' C A 26 OK 536 533 535 554 C4' G A 27 OK 556 553 555 577 C4' G A 28 OK 579 576 578 600 C4' C A 29 OK 602 599 601 620 C4' C A 30 OK 622 619 621 640 C4' G A 31 OK 642 639 641 663 C4' G A 32 OK 665 662 664 686 C4' U A 33 OK 688 685 687 706 C4' U A 34 OK 708 705 707 726 C4' U A 35 OK 728 725 727 746 C4' C A 36 OK 748 745 747 766 C4' G A 37 OK 768 765 767 789 C4' G A 38 OK 791 788 790 812 C4' C A 39 OK 814 811 813 832 C4' C A 40 OK 834 831 833 852 C4' G A 41 OK 854 851 853 875 C4' U A 42 OK 877 874 876 895 C4' A A 43 OK 897 894 896 917 C4' G A 44 OK 919 916 918 940 C4' A A 45 OK 942 939 941 962 C4' G A 46 OK 964 961 963 985 C4' G A 47 OK 987 984 986 1008 C4' A A 48 OK 1010 1007 1009 1030 C4' A A 49 OK 1032 1029 1031 1052 C4' A A 50 OK 1054 1051 1053 1074 C4' G A 51 OK 1076 1073 1075 1097 C4' U A 52 OK 1099 1096 1098 1117 C4' C A 53 OK 1119 1116 1118 1137 C4' C A 54 OK 1139 1136 1138 1157 C4' A A 55 OK 1159 1156 1158 1179 C4' U A 56 OK 1181 1178 1180 1199 C4' G A 57 OK 1201 1198 1200 1222 C4' C A 58 OK 1224 1221 1223 1242 C4' U A 59 OK 1244 1241 1243 1262 C4' C A 60 OK 1264 1261 1263 1282 C4' G A 61 OK 1284 1281 1283 1305 C4' C A 62 OK 1307 1304 1306 1325 C4' A A 63 OK 1327 1324 1326 1347 C4' C A 64 OK 1349 1346 1348 1367 C4' G A 65 OK 1369 1366 1368 1390 C4' G A 66 OK 1392 1389 1391 1413 C4' U A 67 OK 1415 1412 1414 1433 C4' G A 68 OK 1435 1432 1434 1456 C4' C A 69 OK 1458 1455 1457 1476 C4' U A 70 OK 1478 1475 1477 1496 C4' G A 71 OK 1498 1495 1497 1519 C4' A A 72 OK 1521 1518 1520 1541 C4' G A 73 OK 1543 1540 1542 1564 C4' A A 74 OK 1566 1563 1565 1586 C4' U A 75 OK 1588 1585 1587 1606 C4' G A 76 OK 1608 1605 1607 1629 C4' C A 77 OK 1631 1628 1630 1649 C4' C A 78 OK 1651 1648 1650 1669 C4' C A 79 OK 1671 1668 1670 1689 C4' G A 80 OK 1691 1688 1690 1712 C4' U A 81 OK 1714 1711 1713 1729 C4' G A 250 OK 1731 1728 1730 1752 C4' C A 251 OK 1754 1751 1753 1772 C4' G A 252 OK 1774 1771 1773 1795 C4' A A 253 OK 1797 1794 1796 1817 C4' G A 254 OK 1819 1816 1818 1840 C4' A A 255 OK 1842 1839 1841 1862 C4' A A 256 OK 1864 1861 1863 1884 C4' A A 257 OK 1886 1883 1885 1906 C4' C A 258 OK 1908 1905 1907 1926 C4' C A 259 OK 1928 1925 1927 1946 C4' C A 260 OK 1948 1945 1947 1966 C4' A A 261 OK 1968 1965 1967 1988 C4' A A 262 OK 1990 1987 1989 2010 C4' A A 263 OK 2012 2009 2011 2029 C4' A A 271 OK 2031 2028 2030 2051 C4' G A 272 OK 2053 2050 2052 2074 C4' G A 273 OK 2076 2073 2075 2097 C4' G A 274 OK 2099 2096 2098 2120 C4' G A 275 OK 2122 2119 2121 2143 C4' C A 276 OK 2145 2142 2144 2163 C4' A A 277 OK 2165 2162 2164 2185 C4' C A 278 OK 2187 2184 2186 2205 C4' C A 279 OK 2207 2204 2206 2225 C4' U A 280 OK 2227 2224 2226 2245 C4' U A 281 OK 2247 2244 2246 2265 C4' C A 282 OK 2267 2264 2266 2285 C4' C A 283 OK 2287 2284 2286 2305 C4' C A 284 OK 2307 2304 2306 2325 C4' G A 285 OK 2327 2324 2326 2348 C4' A A 286 OK 2350 2347 2349 2370 C4' A A 287 OK 2372 2369 2371 2392 C4' G A 288 OK 2394 2391 2393 2415 C4' G A 289 OK 2417 2414 2416 2438 C4' A A 290 OK 2440 2437 2439 2460 C4' A A 291 OK 2462 2459 2461 2482 C4' A A 292 OK 2484 2481 2483 2504 C4' U A 293 OK 2506 2503 2505 2524 C4' G A 294 OK 2526 2523 2525 2547 C4' A A 295 OK 2549 2546 2548 2569 C4' A A 296 OK 2571 2568 2570 2591 C4' C A 297 OK 2593 2590 2592 2611 C4' G A 298 OK 2613 2610 2612 2634 C4' G A 299 OK 2636 2633 2635 2657 C4' A A 300 OK 2659 2656 2658 2679 C4' G A 301 OK 2681 2678 2680 2702 C4' G A 302 OK 2704 2701 2703 2725 C4' G A 303 OK 2727 2724 2726 2748 C4' A A 304 OK 2750 2747 2749 2770 C4' A A 305 OK 2772 2769 2771 2792 C4' G A 306 OK 2794 2791 2793 2815 C4' G A 307 OK 2817 2814 2816 2838 C4' A A 308 OK 2840 2837 2839 2860 C4' C A 309 OK 2862 2859 2861 2880 C4' A A 310 OK 2882 2879 2881 2902 C4' G A 311 OK 2904 2901 2903 2925 C4' G A 312 OK 2927 2924 2926 2948 C4' C A 313 OK 2950 2947 2949 2968 C4' G A 314 OK 2970 2967 2969 2991 C4' G A 315 OK 2993 2990 2992 3014 C4' C A 316 OK 3016 3013 3015 3034 C4' G A 317 OK 3036 3033 3035 3057 C4' C A 318 OK 3059 3056 3058 3077 C4' A A 319 OK 3079 3076 3078 3099 C4' U A 320 OK 3101 3098 3100 3119 C4' G A 321 OK 3121 3118 3120 3142 C4' C A 322 OK 3144 3141 3143 3162 C4' A A 323 OK 3164 3161 3163 3184 C4' G A 324 OK 3186 3183 3185 3207 C4' C A 325 OK 3209 3206 3208 3227 C4' C A 326 OK 3229 3226 3228 3247 C4' U A 327 OK 3249 3246 3248 3267 C4' G A 328 OK 3269 3266 3268 3290 C4' U A 329 OK 3292 3289 3291 3310 C4' A A 330 OK 3312 3309 3311 3332 C4' G A 331 OK 3334 3331 3333 3355 C4' A A 332 OK 3357 3354 3356 3377 C4' U A 333 OK 3379 3376 3378 3397 C4' A A 334 OK 3399 3396 3398 3419 C4' G A 335 OK 3421 3418 3420 3442 C4' A A 336 OK 3444 3441 3443 3464 C4' U A 337 OK 3466 3463 3465 3484 C4' G A 338 OK 3486 3483 3485 3507 C4' A A 339 OK 3509 3506 3508 3529 C4' U A 340 OK 3531 3528 3530 3549 C4' U A 341 OK 3551 3548 3550 3569 C4' A A 342 OK 3571 3568 3570 3591 C4' C A 343 OK 3593 3590 3592 3611 C4' C A 344 OK 3613 3610 3612 3631 C4' G A 345 OK 3633 3630 3632 3654 C4' C A 346 OK 3656 3653 3655 3674 C4' C A 347 OK 3676 3673 3675 3694 C4' G A 348 OK 3696 3693 3695 3717 C4' G A 349 OK 3719 3716 3718 3740 C4' A A 350 OK 3742 3739 3741 3762 C4' G A 351 OK 3764 3761 3763 3782 C4' U A 376 OK 3784 3781 3783 3802 C4' A A 377 OK 3804 3801 3803 3824 C4' C A 378 OK 3826 3823 3825 3844 C4' G A 379 OK 3846 3843 3845 3867 C4' A A 380 OK 3869 3866 3868 3889 C4' A A 381 OK 3891 3888 3890 3911 C4' G A 382 OK 3913 3910 3912 3934 C4' G A 383 OK 3936 3933 3935 3957 C4' U A 384 OK 3959 3956 3958 3977 C4' A A 385 OK 3979 3976 3978 3999 C4' C A 386 OK 4001 3998 4000 4019 C4' A A 387 OK 4021 4018 4020 4041 C4' G A 388 OK 4043 4040 4042 4064 C4' A A 389 OK 4066 4063 4065 4086 C4' A A 390 OK 4088 4085 4087 4108 C4' C A 391 OK 4110 4107 4109 4128 C4' A A 392 OK 4130 4127 4129 4150 C4' U A 393 OK 4152 4149 4151 4170 C4' G A 394 OK 4172 4169 4171 4193 C4' G A 395 OK 4195 4192 4194 4216 C4' C A 396 OK 4218 4215 4217 4236 C4' U A 397 OK 4238 4235 4237 4256 C4' U A 398 OK 4258 4255 4257 4276 C4' A A 399 OK 4278 4275 4277 4298 C4' U A 400 OK 4300 4297 4299 4318 C4' A A 401 OK 4320 4317 4319 4340 C4' G A 402 OK 4342 4339 4341 4363 C4' A A 403 OK 4365 4362 4364 4385 C4' G A 404 OK 4387 4384 4386 4408 C4' C A 405 OK 4410 4407 4409 4428 C4' A A 406 OK 4430 4427 4429 4450 C4' U A 407 OK 4452 4449 4451 4470 C4' G A 408 OK 4472 4469 4471 4493 C4' A A 409 OK 4495 4492 4494 4515 C4' U A 410 OK 4517 4514 4516 4535 C4' U A 411 OK 4537 4534 4536 4555 C4' A A 412 OK 4557 4554 4556 4577 C4' A A 413 OK 4579 4576 4578 4599 C4' C A 414 OK 4601 4598 4600 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 2 C5' G A 1 1 3 25 C5' U A 2 24 26 45 C5' U A 3 44 46 65 C5' A A 4 64 66 87 C5' A A 5 86 88 109 C5' U A 6 108 110 129 C5' C A 7 128 130 149 C5' A A 8 148 150 171 C5' U A 9 170 172 191 C5' G A 10 190 192 214 C5' C A 11 213 215 234 C5' U A 12 233 235 254 C5' C A 13 253 255 274 C5' G A 14 273 275 297 C5' G A 15 296 298 320 C5' G A 16 319 321 343 C5' U A 17 342 344 363 C5' A A 18 362 364 385 C5' A A 19 384 386 407 C5' U A 20 406 408 427 C5' C A 21 426 428 447 C5' G A 22 446 448 470 C5' C A 23 469 471 490 C5' U A 24 489 491 510 C5' G A 25 509 511 533 C5' C A 26 532 534 553 C5' G A 27 552 554 576 C5' G A 28 575 577 599 C5' C A 29 598 600 619 C5' C A 30 618 620 639 C5' G A 31 638 640 662 C5' G A 32 661 663 685 C5' U A 33 684 686 705 C5' U A 34 704 706 725 C5' U A 35 724 726 745 C5' C A 36 744 746 765 C5' G A 37 764 766 788 C5' G A 38 787 789 811 C5' C A 39 810 812 831 C5' C A 40 830 832 851 C5' G A 41 850 852 874 C5' U A 42 873 875 894 C5' A A 43 893 895 916 C5' G A 44 915 917 939 C5' A A 45 938 940 961 C5' G A 46 960 962 984 C5' G A 47 983 985 1007 C5' A A 48 1006 1008 1029 C5' A A 49 1028 1030 1051 C5' A A 50 1050 1052 1073 C5' G A 51 1072 1074 1096 C5' U A 52 1095 1097 1116 C5' C A 53 1115 1117 1136 C5' C A 54 1135 1137 1156 C5' A A 55 1155 1157 1178 C5' U A 56 1177 1179 1198 C5' G A 57 1197 1199 1221 C5' C A 58 1220 1222 1241 C5' U A 59 1240 1242 1261 C5' C A 60 1260 1262 1281 C5' G A 61 1280 1282 1304 C5' C A 62 1303 1305 1324 C5' A A 63 1323 1325 1346 C5' C A 64 1345 1347 1366 C5' G A 65 1365 1367 1389 C5' G A 66 1388 1390 1412 C5' U A 67 1411 1413 1432 C5' G A 68 1431 1433 1455 C5' C A 69 1454 1456 1475 C5' U A 70 1474 1476 1495 C5' G A 71 1494 1496 1518 C5' A A 72 1517 1519 1540 C5' G A 73 1539 1541 1563 C5' A A 74 1562 1564 1585 C5' U A 75 1584 1586 1605 C5' G A 76 1604 1606 1628 C5' C A 77 1627 1629 1648 C5' C A 78 1647 1649 1668 C5' C A 79 1667 1669 1688 C5' G A 80 1687 1689 1711 C5' U A 81 1710 1712 1728 C5' G A 250 1727 1729 1751 C5' C A 251 1750 1752 1771 C5' G A 252 1770 1772 1794 C5' A A 253 1793 1795 1816 C5' G A 254 1815 1817 1839 C5' A A 255 1838 1840 1861 C5' A A 256 1860 1862 1883 C5' A A 257 1882 1884 1905 C5' C A 258 1904 1906 1925 C5' C A 259 1924 1926 1945 C5' C A 260 1944 1946 1965 C5' A A 261 1964 1966 1987 C5' A A 262 1986 1988 2009 C5' A A 263 2008 2010 2028 C5' A A 271 2027 2029 2050 C5' G A 272 2049 2051 2073 C5' G A 273 2072 2074 2096 C5' G A 274 2095 2097 2119 C5' G A 275 2118 2120 2142 C5' C A 276 2141 2143 2162 C5' A A 277 2161 2163 2184 C5' C A 278 2183 2185 2204 C5' C A 279 2203 2205 2224 C5' U A 280 2223 2225 2244 C5' U A 281 2243 2245 2264 C5' C A 282 2263 2265 2284 C5' C A 283 2283 2285 2304 C5' C A 284 2303 2305 2324 C5' G A 285 2323 2325 2347 C5' A A 286 2346 2348 2369 C5' A A 287 2368 2370 2391 C5' G A 288 2390 2392 2414 C5' G A 289 2413 2415 2437 C5' A A 290 2436 2438 2459 C5' A A 291 2458 2460 2481 C5' A A 292 2480 2482 2503 C5' U A 293 2502 2504 2523 C5' G A 294 2522 2524 2546 C5' A A 295 2545 2547 2568 C5' A A 296 2567 2569 2590 C5' C A 297 2589 2591 2610 C5' G A 298 2609 2611 2633 C5' G A 299 2632 2634 2656 C5' A A 300 2655 2657 2678 C5' G A 301 2677 2679 2701 C5' G A 302 2700 2702 2724 C5' G A 303 2723 2725 2747 C5' A A 304 2746 2748 2769 C5' A A 305 2768 2770 2791 C5' G A 306 2790 2792 2814 C5' G A 307 2813 2815 2837 C5' A A 308 2836 2838 2859 C5' C A 309 2858 2860 2879 C5' A A 310 2878 2880 2901 C5' G A 311 2900 2902 2924 C5' G A 312 2923 2925 2947 C5' C A 313 2946 2948 2967 C5' G A 314 2966 2968 2990 C5' G A 315 2989 2991 3013 C5' C A 316 3012 3014 3033 C5' G A 317 3032 3034 3056 C5' C A 318 3055 3057 3076 C5' A A 319 3075 3077 3098 C5' U A 320 3097 3099 3118 C5' G A 321 3117 3119 3141 C5' C A 322 3140 3142 3161 C5' A A 323 3160 3162 3183 C5' G A 324 3182 3184 3206 C5' C A 325 3205 3207 3226 C5' C A 326 3225 3227 3246 C5' U A 327 3245 3247 3266 C5' G A 328 3265 3267 3289 C5' U A 329 3288 3290 3309 C5' A A 330 3308 3310 3331 C5' G A 331 3330 3332 3354 C5' A A 332 3353 3355 3376 C5' U A 333 3375 3377 3396 C5' A A 334 3395 3397 3418 C5' G A 335 3417 3419 3441 C5' A A 336 3440 3442 3463 C5' U A 337 3462 3464 3483 C5' G A 338 3482 3484 3506 C5' A A 339 3505 3507 3528 C5' U A 340 3527 3529 3548 C5' U A 341 3547 3549 3568 C5' A A 342 3567 3569 3590 C5' C A 343 3589 3591 3610 C5' C A 344 3609 3611 3630 C5' G A 345 3629 3631 3653 C5' C A 346 3652 3654 3673 C5' C A 347 3672 3674 3693 C5' G A 348 3692 3694 3716 C5' G A 349 3715 3717 3739 C5' A A 350 3738 3740 3761 C5' G A 351 3760 3762 3781 C5' U A 376 3780 3782 3801 C5' A A 377 3800 3802 3823 C5' C A 378 3822 3824 3843 C5' G A 379 3842 3844 3866 C5' A A 380 3865 3867 3888 C5' A A 381 3887 3889 3910 C5' G A 382 3909 3911 3933 C5' G A 383 3932 3934 3956 C5' U A 384 3955 3957 3976 C5' A A 385 3975 3977 3998 C5' C A 386 3997 3999 4018 C5' A A 387 4017 4019 4040 C5' G A 388 4039 4041 4063 C5' A A 389 4062 4064 4085 C5' A A 390 4084 4086 4107 C5' C A 391 4106 4108 4127 C5' A A 392 4126 4128 4149 C5' U A 393 4148 4150 4169 C5' G A 394 4168 4170 4192 C5' G A 395 4191 4193 4215 C5' C A 396 4214 4216 4235 C5' U A 397 4234 4236 4255 C5' U A 398 4254 4256 4275 C5' A A 399 4274 4276 4297 C5' U A 400 4296 4298 4317 C5' A A 401 4316 4318 4339 C5' G A 402 4338 4340 4362 C5' A A 403 4361 4363 4384 C5' G A 404 4383 4385 4407 C5' C A 405 4406 4408 4427 C5' A A 406 4426 4428 4449 C5' U A 407 4448 4450 4469 C5' G A 408 4468 4470 4492 C5' A A 409 4491 4493 4514 C5' U A 410 4513 4515 4534 C5' U A 411 4533 4535 4554 C5' A A 412 4553 4555 4576 C5' A A 413 4575 4577 4598 C5' C A 414 4597 4599 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 21 P U A 2 distorted distorted 6 22 23 24 41 P U A 3 distorted distorted 29 42 43 44 61 P A A 4 distorted distorted 49 62 63 64 83 P A A 5 distorted distorted 69 84 85 86 105 P U A 6 distorted distorted 91 106 107 108 125 P C A 7 distorted distorted 113 126 127 128 145 P A A 8 distorted distorted 133 146 147 148 167 P U A 9 distorted distorted 153 168 169 170 187 P G A 10 distorted distorted 175 188 189 190 210 P C A 11 distorted distorted 195 211 212 213 230 P U A 12 distorted distorted 218 231 232 233 250 P C A 13 distorted distorted 238 251 252 253 270 P G A 14 distorted distorted 258 271 272 273 293 P G A 15 distorted distorted 278 294 295 296 316 P G A 16 distorted distorted 301 317 318 319 339 P U A 17 distorted distorted 324 340 341 342 359 P A A 18 distorted distorted 347 360 361 362 381 P A A 19 distorted distorted 367 382 383 384 403 P U A 20 distorted distorted 389 404 405 406 423 P C A 21 distorted distorted 411 424 425 426 443 P G A 22 distorted distorted 431 444 445 446 466 P C A 23 distorted distorted 451 467 468 469 486 P U A 24 distorted distorted 474 487 488 489 506 P G A 25 distorted distorted 494 507 508 509 529 P C A 26 distorted distorted 514 530 531 532 549 P G A 27 distorted distorted 537 550 551 552 572 P G A 28 distorted distorted 557 573 574 575 595 P C A 29 distorted distorted 580 596 597 598 615 P C A 30 distorted distorted 603 616 617 618 635 P G A 31 distorted distorted 623 636 637 638 658 P G A 32 distorted distorted 643 659 660 661 681 P U A 33 distorted distorted 666 682 683 684 701 P U A 34 distorted distorted 689 702 703 704 721 P U A 35 distorted distorted 709 722 723 724 741 P C A 36 distorted distorted 729 742 743 744 761 P G A 37 distorted distorted 749 762 763 764 784 P G A 38 distorted distorted 769 785 786 787 807 P C A 39 distorted distorted 792 808 809 810 827 P C A 40 distorted distorted 815 828 829 830 847 P G A 41 distorted distorted 835 848 849 850 870 P U A 42 distorted distorted 855 871 872 873 890 P A A 43 distorted distorted 878 891 892 893 912 P G A 44 distorted distorted 898 913 914 915 935 P A A 45 distorted distorted 920 936 937 938 957 P G A 46 distorted distorted 943 958 959 960 980 P G A 47 distorted distorted 965 981 982 983 1003 P A A 48 distorted distorted 988 1004 1005 1006 1025 P A A 49 distorted distorted 1011 1026 1027 1028 1047 P A A 50 distorted distorted 1033 1048 1049 1050 1069 P G A 51 distorted distorted 1055 1070 1071 1072 1092 P U A 52 distorted distorted 1077 1093 1094 1095 1112 P C A 53 distorted distorted 1100 1113 1114 1115 1132 P C A 54 distorted distorted 1120 1133 1134 1135 1152 P A A 55 distorted distorted 1140 1153 1154 1155 1174 P U A 56 distorted distorted 1160 1175 1176 1177 1194 P G A 57 distorted distorted 1182 1195 1196 1197 1217 P C A 58 distorted distorted 1202 1218 1219 1220 1237 P U A 59 distorted distorted 1225 1238 1239 1240 1257 P C A 60 distorted distorted 1245 1258 1259 1260 1277 P G A 61 distorted distorted 1265 1278 1279 1280 1300 P C A 62 distorted distorted 1285 1301 1302 1303 1320 P A A 63 distorted distorted 1308 1321 1322 1323 1342 P C A 64 distorted distorted 1328 1343 1344 1345 1362 P G A 65 distorted distorted 1350 1363 1364 1365 1385 P G A 66 distorted distorted 1370 1386 1387 1388 1408 P U A 67 distorted distorted 1393 1409 1410 1411 1428 P G A 68 distorted distorted 1416 1429 1430 1431 1451 P C A 69 distorted distorted 1436 1452 1453 1454 1471 P U A 70 distorted distorted 1459 1472 1473 1474 1491 P G A 71 distorted distorted 1479 1492 1493 1494 1514 P A A 72 distorted distorted 1499 1515 1516 1517 1536 P G A 73 distorted distorted 1522 1537 1538 1539 1559 P A A 74 distorted distorted 1544 1560 1561 1562 1581 P U A 75 distorted distorted 1567 1582 1583 1584 1601 P G A 76 distorted distorted 1589 1602 1603 1604 1624 P C A 77 distorted distorted 1609 1625 1626 1627 1644 P C A 78 distorted distorted 1632 1645 1646 1647 1664 P C A 79 distorted distorted 1652 1665 1666 1667 1684 P G A 80 distorted distorted 1672 1685 1686 1687 1707 P U A 81 distorted distorted 1692 1708 1709 1710 1747 P C A 251 distorted distorted 1732 1748 1749 1750 1767 P G A 252 distorted distorted 1755 1768 1769 1770 1790 P A A 253 distorted distorted 1775 1791 1792 1793 1812 P G A 254 distorted distorted 1798 1813 1814 1815 1835 P A A 255 distorted distorted 1820 1836 1837 1838 1857 P A A 256 distorted distorted 1843 1858 1859 1860 1879 P A A 257 distorted distorted 1865 1880 1881 1882 1901 P C A 258 distorted distorted 1887 1902 1903 1904 1921 P C A 259 distorted distorted 1909 1922 1923 1924 1941 P C A 260 distorted distorted 1929 1942 1943 1944 1961 P A A 261 distorted distorted 1949 1962 1963 1964 1983 P A A 262 distorted distorted 1969 1984 1985 1986 2005 P A A 263 distorted distorted 1991 2006 2007 2008 2046 P G A 272 distorted distorted 2032 2047 2048 2049 2069 P G A 273 distorted distorted 2054 2070 2071 2072 2092 P G A 274 distorted distorted 2077 2093 2094 2095 2115 P G A 275 distorted distorted 2100 2116 2117 2118 2138 P C A 276 distorted distorted 2123 2139 2140 2141 2158 P A A 277 distorted distorted 2146 2159 2160 2161 2180 P C A 278 distorted distorted 2166 2181 2182 2183 2200 P C A 279 distorted distorted 2188 2201 2202 2203 2220 P U A 280 distorted distorted 2208 2221 2222 2223 2240 P U A 281 distorted distorted 2228 2241 2242 2243 2260 P C A 282 distorted distorted 2248 2261 2262 2263 2280 P C A 283 distorted distorted 2268 2281 2282 2283 2300 P C A 284 distorted distorted 2288 2301 2302 2303 2320 P G A 285 distorted distorted 2308 2321 2322 2323 2343 P A A 286 distorted distorted 2328 2344 2345 2346 2365 P A A 287 distorted distorted 2351 2366 2367 2368 2387 P G A 288 distorted distorted 2373 2388 2389 2390 2410 P G A 289 distorted distorted 2395 2411 2412 2413 2433 P A A 290 distorted distorted 2418 2434 2435 2436 2455 P A A 291 distorted distorted 2441 2456 2457 2458 2477 P A A 292 distorted distorted 2463 2478 2479 2480 2499 P U A 293 distorted distorted 2485 2500 2501 2502 2519 P G A 294 distorted distorted 2507 2520 2521 2522 2542 P A A 295 distorted distorted 2527 2543 2544 2545 2564 P A A 296 distorted distorted 2550 2565 2566 2567 2586 P C A 297 distorted distorted 2572 2587 2588 2589 2606 P G A 298 distorted distorted 2594 2607 2608 2609 2629 P G A 299 distorted distorted 2614 2630 2631 2632 2652 P A A 300 distorted distorted 2637 2653 2654 2655 2674 P G A 301 distorted distorted 2660 2675 2676 2677 2697 P G A 302 distorted distorted 2682 2698 2699 2700 2720 P G A 303 distorted distorted 2705 2721 2722 2723 2743 P A A 304 distorted distorted 2728 2744 2745 2746 2765 P A A 305 distorted distorted 2751 2766 2767 2768 2787 P G A 306 distorted distorted 2773 2788 2789 2790 2810 P G A 307 distorted distorted 2795 2811 2812 2813 2833 P A A 308 distorted distorted 2818 2834 2835 2836 2855 P C A 309 distorted distorted 2841 2856 2857 2858 2875 P A A 310 distorted distorted 2863 2876 2877 2878 2897 P G A 311 distorted distorted 2883 2898 2899 2900 2920 P G A 312 distorted distorted 2905 2921 2922 2923 2943 P C A 313 distorted distorted 2928 2944 2945 2946 2963 P G A 314 distorted distorted 2951 2964 2965 2966 2986 P G A 315 distorted distorted 2971 2987 2988 2989 3009 P C A 316 distorted distorted 2994 3010 3011 3012 3029 P G A 317 distorted distorted 3017 3030 3031 3032 3052 P C A 318 distorted distorted 3037 3053 3054 3055 3072 P A A 319 distorted distorted 3060 3073 3074 3075 3094 P U A 320 distorted distorted 3080 3095 3096 3097 3114 P G A 321 distorted distorted 3102 3115 3116 3117 3137 P C A 322 distorted distorted 3122 3138 3139 3140 3157 P A A 323 distorted distorted 3145 3158 3159 3160 3179 P G A 324 distorted distorted 3165 3180 3181 3182 3202 P C A 325 distorted distorted 3187 3203 3204 3205 3222 P C A 326 distorted distorted 3210 3223 3224 3225 3242 P U A 327 distorted distorted 3230 3243 3244 3245 3262 P G A 328 distorted distorted 3250 3263 3264 3265 3285 P U A 329 distorted distorted 3270 3286 3287 3288 3305 P A A 330 distorted distorted 3293 3306 3307 3308 3327 P G A 331 distorted distorted 3313 3328 3329 3330 3350 P A A 332 distorted distorted 3335 3351 3352 3353 3372 P U A 333 distorted distorted 3358 3373 3374 3375 3392 P A A 334 distorted distorted 3380 3393 3394 3395 3414 P G A 335 distorted distorted 3400 3415 3416 3417 3437 P A A 336 distorted distorted 3422 3438 3439 3440 3459 P U A 337 distorted distorted 3445 3460 3461 3462 3479 P G A 338 distorted distorted 3467 3480 3481 3482 3502 P A A 339 distorted distorted 3487 3503 3504 3505 3524 P U A 340 distorted distorted 3510 3525 3526 3527 3544 P U A 341 distorted distorted 3532 3545 3546 3547 3564 P A A 342 distorted distorted 3552 3565 3566 3567 3586 P C A 343 distorted distorted 3572 3587 3588 3589 3606 P C A 344 distorted distorted 3594 3607 3608 3609 3626 P G A 345 distorted distorted 3614 3627 3628 3629 3649 P C A 346 distorted distorted 3634 3650 3651 3652 3669 P C A 347 distorted distorted 3657 3670 3671 3672 3689 P G A 348 distorted distorted 3677 3690 3691 3692 3712 P G A 349 distorted distorted 3697 3713 3714 3715 3735 P A A 350 distorted distorted 3720 3736 3737 3738 3757 P G A 351 distorted distorted 3743 3758 3759 3760 3797 P A A 377 distorted distorted 3785 3798 3799 3800 3819 P C A 378 distorted distorted 3805 3820 3821 3822 3839 P G A 379 distorted distorted 3827 3840 3841 3842 3862 P A A 380 distorted distorted 3847 3863 3864 3865 3884 P A A 381 distorted distorted 3870 3885 3886 3887 3906 P G A 382 distorted distorted 3892 3907 3908 3909 3929 P G A 383 distorted distorted 3914 3930 3931 3932 3952 P U A 384 distorted distorted 3937 3953 3954 3955 3972 P A A 385 distorted distorted 3960 3973 3974 3975 3994 P C A 386 distorted distorted 3980 3995 3996 3997 4014 P A A 387 distorted distorted 4002 4015 4016 4017 4036 P G A 388 distorted distorted 4022 4037 4038 4039 4059 P A A 389 distorted distorted 4044 4060 4061 4062 4081 P A A 390 distorted distorted 4067 4082 4083 4084 4103 P C A 391 distorted distorted 4089 4104 4105 4106 4123 P A A 392 distorted distorted 4111 4124 4125 4126 4145 P U A 393 distorted distorted 4131 4146 4147 4148 4165 P G A 394 distorted distorted 4153 4166 4167 4168 4188 P G A 395 distorted distorted 4173 4189 4190 4191 4211 P C A 396 distorted distorted 4196 4212 4213 4214 4231 P U A 397 distorted distorted 4219 4232 4233 4234 4251 P U A 398 distorted distorted 4239 4252 4253 4254 4271 P A A 399 distorted distorted 4259 4272 4273 4274 4293 P U A 400 distorted distorted 4279 4294 4295 4296 4313 P A A 401 distorted distorted 4301 4314 4315 4316 4335 P G A 402 distorted distorted 4321 4336 4337 4338 4358 P A A 403 distorted distorted 4343 4359 4360 4361 4380 P G A 404 distorted distorted 4366 4381 4382 4383 4403 P C A 405 distorted distorted 4388 4404 4405 4406 4423 P A A 406 distorted distorted 4411 4424 4425 4426 4445 P U A 407 distorted distorted 4431 4446 4447 4448 4465 P G A 408 distorted distorted 4453 4466 4467 4468 4488 P A A 409 distorted distorted 4473 4489 4490 4491 4510 P U A 410 distorted distorted 4496 4511 4512 4513 4530 P U A 411 distorted distorted 4518 4531 4532 4533 4550 P A A 412 distorted distorted 4538 4551 4552 4553 4572 P A A 413 distorted distorted 4558 4573 4574 4575 4594 P C A 414 distorted distorted 4580 4595 4596 4597 ---------------------------------------------------------------------------------