ID code: '3DH3' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 1912 C1' A E2587 beta 1907 1913 1910 1934 C1' G E2588 beta 1929 1935 1932 1957 C1' A E2589 beta 1952 1958 1955 1979 C1' A E2590 beta 1974 1980 1977 2001 C1' C E2591 beta 1996 2002 1999 2021 C1' G E2592 beta 2016 2022 2019 2044 C1' U E2593 beta 2039 2045 2042 2064 C1' C E2594 beta 2059 2065 2062 2084 C1' G E2595 beta 2079 2085 2082 2107 C1' U E2596 beta 2102 2108 2105 2127 C1' G E2597 beta 2122 2128 2125 2150 C1' A E2598 beta 2145 2151 2148 2172 C1' G E2599 beta 2167 2173 2170 2195 C1' A E2600 beta 2190 2196 2193 2217 C1' C E2601 beta 2212 2218 2215 2237 C1' A E2602 beta 2232 2238 2235 2259 C1' G E2603 beta 2254 2260 2257 2279 C1' FHU E2604 beta 2285 2275 2280 2304 C1' U E2605 beta 2299 2305 2302 2324 C1' C E2606 beta 2319 2325 2322 2344 C1' G E2607 beta 2339 2345 2342 2367 C1' G E2608 beta 2362 2368 2365 4298 C1' A F2587 beta 4293 4299 4296 4320 C1' G F2588 beta 4315 4321 4318 4343 C1' A F2589 beta 4338 4344 4341 4365 C1' A F2590 beta 4360 4366 4363 4387 C1' C F2591 beta 4382 4388 4385 4407 C1' G F2592 beta 4402 4408 4405 4430 C1' U F2593 beta 4425 4431 4428 4450 C1' C F2594 beta 4445 4451 4448 4470 C1' G F2595 beta 4465 4471 4468 4493 C1' U F2596 beta 4488 4494 4491 4513 C1' G F2597 beta 4508 4514 4511 4536 C1' A F2598 beta 4531 4537 4534 4558 C1' G F2599 beta 4553 4559 4556 4581 C1' A F2600 beta 4576 4582 4579 4603 C1' C F2601 beta 4598 4604 4601 4623 C1' A F2602 beta 4618 4624 4621 4645 C1' G F2603 beta 4640 4646 4643 4665 C1' FHU F2604 beta 4671 4661 4666 4690 C1' U F2605 beta 4685 4691 4688 4710 C1' C F2606 beta 4705 4711 4708 4730 C1' G F2607 beta 4725 4731 4728 4753 C1' G F2608 beta 4748 4754 4751 6670 C1' A G2587 beta 6665 6671 6668 6692 C1' G G2588 beta 6687 6693 6690 6715 C1' A G2589 beta 6710 6716 6713 6737 C1' A G2590 beta 6732 6738 6735 6759 C1' C G2591 beta 6754 6760 6757 6779 C1' G G2592 beta 6774 6780 6777 6802 C1' U G2593 beta 6797 6803 6800 6822 C1' C G2594 beta 6817 6823 6820 6842 C1' G G2595 beta 6837 6843 6840 6865 C1' U G2596 beta 6860 6866 6863 6885 C1' G G2597 beta 6880 6886 6883 6908 C1' A G2598 beta 6903 6909 6906 6930 C1' G G2599 beta 6925 6931 6928 6953 C1' A G2600 beta 6948 6954 6951 6975 C1' C G2601 beta 6970 6976 6973 6995 C1' A G2602 beta 6990 6996 6993 7017 C1' G G2603 beta 7012 7018 7015 7037 C1' FHU G2604 beta 7043 7033 7038 7062 C1' U G2605 beta 7057 7063 7060 7082 C1' C G2606 beta 7077 7083 7080 7102 C1' G G2607 beta 7097 7103 7100 7125 C1' G G2608 beta 7120 7126 7123 9042 C1' A H2587 beta 9037 9043 9040 9064 C1' G H2588 beta 9059 9065 9062 9087 C1' A H2589 beta 9082 9088 9085 9109 C1' A H2590 beta 9104 9110 9107 9131 C1' C H2591 beta 9126 9132 9129 9151 C1' G H2592 beta 9146 9152 9149 9174 C1' U H2593 beta 9169 9175 9172 9194 C1' C H2594 beta 9189 9195 9192 9214 C1' G H2595 beta 9209 9215 9212 9237 C1' U H2596 beta 9232 9238 9235 9257 C1' G H2597 beta 9252 9258 9255 9280 C1' A H2598 beta 9275 9281 9278 9302 C1' G H2599 beta 9297 9303 9300 9325 C1' A H2600 beta 9320 9326 9323 9347 C1' C H2601 beta 9342 9348 9345 9367 C1' A H2602 beta 9362 9368 9365 9389 C1' G H2603 beta 9384 9390 9387 9409 C1' FHU H2604 beta 9415 9405 9410 9434 C1' U H2605 beta 9429 9435 9432 9454 C1' C H2606 beta 9449 9455 9452 9474 C1' G H2607 beta 9469 9475 9472 9497 C1' G H2608 beta 9492 9498 9495 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 1910 C2' A E2587 OK 1912 1908 1911 1932 C2' G E2588 OK 1934 1930 1933 1955 C2' A E2589 OK 1957 1953 1956 1977 C2' A E2590 OK 1979 1975 1978 1999 C2' C E2591 OK 2001 1997 2000 2019 C2' G E2592 OK 2021 2017 2020 2042 C2' U E2593 OK 2044 2040 2043 2062 C2' C E2594 OK 2064 2060 2063 2082 C2' G E2595 OK 2084 2080 2083 2105 C2' U E2596 OK 2107 2103 2106 2125 C2' G E2597 OK 2127 2123 2126 2148 C2' A E2598 OK 2150 2146 2149 2170 C2' G E2599 OK 2172 2168 2171 2193 C2' A E2600 OK 2195 2191 2194 2215 C2' C E2601 OK 2217 2213 2216 2235 C2' A E2602 OK 2237 2233 2236 2257 C2' G E2603 OK 2259 2255 2258 2280 C2' FHU E2604 OK 2279 2282 2281 2302 C2' U E2605 OK 2304 2300 2303 2322 C2' C E2606 OK 2324 2320 2323 2342 C2' G E2607 OK 2344 2340 2343 2365 C2' G E2608 OK 2367 2363 2366 4296 C2' A F2587 OK 4298 4294 4297 4318 C2' G F2588 OK 4320 4316 4319 4341 C2' A F2589 OK 4343 4339 4342 4363 C2' A F2590 OK 4365 4361 4364 4385 C2' C F2591 OK 4387 4383 4386 4405 C2' G F2592 OK 4407 4403 4406 4428 C2' U F2593 OK 4430 4426 4429 4448 C2' C F2594 OK 4450 4446 4449 4468 C2' G F2595 OK 4470 4466 4469 4491 C2' U F2596 OK 4493 4489 4492 4511 C2' G F2597 OK 4513 4509 4512 4534 C2' A F2598 OK 4536 4532 4535 4556 C2' G F2599 OK 4558 4554 4557 4579 C2' A F2600 OK 4581 4577 4580 4601 C2' C F2601 OK 4603 4599 4602 4621 C2' A F2602 OK 4623 4619 4622 4643 C2' G F2603 OK 4645 4641 4644 4666 C2' FHU F2604 OK 4665 4668 4667 4688 C2' U F2605 OK 4690 4686 4689 4708 C2' C F2606 OK 4710 4706 4709 4728 C2' G F2607 OK 4730 4726 4729 4751 C2' G F2608 OK 4753 4749 4752 6668 C2' A G2587 OK 6670 6666 6669 6690 C2' G G2588 OK 6692 6688 6691 6713 C2' A G2589 OK 6715 6711 6714 6735 C2' A G2590 OK 6737 6733 6736 6757 C2' C G2591 OK 6759 6755 6758 6777 C2' G G2592 OK 6779 6775 6778 6800 C2' U G2593 OK 6802 6798 6801 6820 C2' C G2594 OK 6822 6818 6821 6840 C2' G G2595 OK 6842 6838 6841 6863 C2' U G2596 OK 6865 6861 6864 6883 C2' G G2597 OK 6885 6881 6884 6906 C2' A G2598 OK 6908 6904 6907 6928 C2' G G2599 OK 6930 6926 6929 6951 C2' A G2600 OK 6953 6949 6952 6973 C2' C G2601 OK 6975 6971 6974 6993 C2' A G2602 OK 6995 6991 6994 7015 C2' G G2603 OK 7017 7013 7016 7038 C2' FHU G2604 OK 7037 7040 7039 7060 C2' U G2605 OK 7062 7058 7061 7080 C2' C G2606 OK 7082 7078 7081 7100 C2' G G2607 OK 7102 7098 7101 7123 C2' G G2608 OK 7125 7121 7124 9040 C2' A H2587 OK 9042 9038 9041 9062 C2' G H2588 OK 9064 9060 9063 9085 C2' A H2589 OK 9087 9083 9086 9107 C2' A H2590 OK 9109 9105 9108 9129 C2' C H2591 OK 9131 9127 9130 9149 C2' G H2592 OK 9151 9147 9150 9172 C2' U H2593 OK 9174 9170 9173 9192 C2' C H2594 OK 9194 9190 9193 9212 C2' G H2595 OK 9214 9210 9213 9235 C2' U H2596 OK 9237 9233 9236 9255 C2' G H2597 OK 9257 9253 9256 9278 C2' A H2598 OK 9280 9276 9279 9300 C2' G H2599 OK 9302 9298 9301 9323 C2' A H2600 OK 9325 9321 9324 9345 C2' C H2601 OK 9347 9343 9346 9365 C2' A H2602 OK 9367 9363 9366 9387 C2' G H2603 OK 9389 9385 9388 9410 C2' FHU H2604 OK 9409 9412 9411 9432 C2' U H2605 OK 9434 9430 9433 9452 C2' C H2606 OK 9454 9450 9453 9472 C2' G H2607 OK 9474 9470 9473 9495 C2' G H2608 OK 9497 9493 9496 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 1908 C3' A E2587 OK 1906 1909 1910 1930 C3' G E2588 OK 1928 1931 1932 1953 C3' A E2589 OK 1951 1954 1955 1975 C3' A E2590 OK 1973 1976 1977 1997 C3' C E2591 OK 1995 1998 1999 2017 C3' G E2592 OK 2015 2018 2019 2040 C3' U E2593 OK 2038 2041 2042 2060 C3' C E2594 OK 2058 2061 2062 2080 C3' G E2595 OK 2078 2081 2082 2103 C3' U E2596 OK 2101 2104 2105 2123 C3' G E2597 OK 2121 2124 2125 2146 C3' A E2598 OK 2144 2147 2148 2168 C3' G E2599 OK 2166 2169 2170 2191 C3' A E2600 OK 2189 2192 2193 2213 C3' C E2601 OK 2211 2214 2215 2233 C3' A E2602 OK 2231 2234 2235 2255 C3' G E2603 OK 2253 2256 2257 2282 C3' FHU E2604 OK 2283 2284 2280 2300 C3' U E2605 OK 2298 2301 2302 2320 C3' C E2606 OK 2318 2321 2322 2340 C3' G E2607 OK 2338 2341 2342 2363 C3' G E2608 OK 2361 2364 2365 4294 C3' A F2587 OK 4292 4295 4296 4316 C3' G F2588 OK 4314 4317 4318 4339 C3' A F2589 OK 4337 4340 4341 4361 C3' A F2590 OK 4359 4362 4363 4383 C3' C F2591 OK 4381 4384 4385 4403 C3' G F2592 OK 4401 4404 4405 4426 C3' U F2593 OK 4424 4427 4428 4446 C3' C F2594 OK 4444 4447 4448 4466 C3' G F2595 OK 4464 4467 4468 4489 C3' U F2596 OK 4487 4490 4491 4509 C3' G F2597 OK 4507 4510 4511 4532 C3' A F2598 OK 4530 4533 4534 4554 C3' G F2599 OK 4552 4555 4556 4577 C3' A F2600 OK 4575 4578 4579 4599 C3' C F2601 OK 4597 4600 4601 4619 C3' A F2602 OK 4617 4620 4621 4641 C3' G F2603 OK 4639 4642 4643 4668 C3' FHU F2604 OK 4669 4670 4666 4686 C3' U F2605 OK 4684 4687 4688 4706 C3' C F2606 OK 4704 4707 4708 4726 C3' G F2607 OK 4724 4727 4728 4749 C3' G F2608 OK 4747 4750 4751 6666 C3' A G2587 OK 6664 6667 6668 6688 C3' G G2588 OK 6686 6689 6690 6711 C3' A G2589 OK 6709 6712 6713 6733 C3' A G2590 OK 6731 6734 6735 6755 C3' C G2591 OK 6753 6756 6757 6775 C3' G G2592 OK 6773 6776 6777 6798 C3' U G2593 OK 6796 6799 6800 6818 C3' C G2594 OK 6816 6819 6820 6838 C3' G G2595 OK 6836 6839 6840 6861 C3' U G2596 OK 6859 6862 6863 6881 C3' G G2597 OK 6879 6882 6883 6904 C3' A G2598 OK 6902 6905 6906 6926 C3' G G2599 OK 6924 6927 6928 6949 C3' A G2600 OK 6947 6950 6951 6971 C3' C G2601 OK 6969 6972 6973 6991 C3' A G2602 OK 6989 6992 6993 7013 C3' G G2603 OK 7011 7014 7015 7040 C3' FHU G2604 OK 7041 7042 7038 7058 C3' U G2605 OK 7056 7059 7060 7078 C3' C G2606 OK 7076 7079 7080 7098 C3' G G2607 OK 7096 7099 7100 7121 C3' G G2608 OK 7119 7122 7123 9038 C3' A H2587 OK 9036 9039 9040 9060 C3' G H2588 OK 9058 9061 9062 9083 C3' A H2589 OK 9081 9084 9085 9105 C3' A H2590 OK 9103 9106 9107 9127 C3' C H2591 OK 9125 9128 9129 9147 C3' G H2592 OK 9145 9148 9149 9170 C3' U H2593 OK 9168 9171 9172 9190 C3' C H2594 OK 9188 9191 9192 9210 C3' G H2595 OK 9208 9211 9212 9233 C3' U H2596 OK 9231 9234 9235 9253 C3' G H2597 OK 9251 9254 9255 9276 C3' A H2598 OK 9274 9277 9278 9298 C3' G H2599 OK 9296 9299 9300 9321 C3' A H2600 OK 9319 9322 9323 9343 C3' C H2601 OK 9341 9344 9345 9363 C3' A H2602 OK 9361 9364 9365 9385 C3' G H2603 OK 9383 9386 9387 9412 C3' FHU H2604 OK 9413 9414 9410 9430 C3' U H2605 OK 9428 9431 9432 9450 C3' C H2606 OK 9448 9451 9452 9470 C3' G H2607 OK 9468 9471 9472 9493 C3' G H2608 OK 9491 9494 9495 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 1906 C4' A E2587 OK 1908 1905 1907 1928 C4' G E2588 OK 1930 1927 1929 1951 C4' A E2589 OK 1953 1950 1952 1973 C4' A E2590 OK 1975 1972 1974 1995 C4' C E2591 OK 1997 1994 1996 2015 C4' G E2592 OK 2017 2014 2016 2038 C4' U E2593 OK 2040 2037 2039 2058 C4' C E2594 OK 2060 2057 2059 2078 C4' G E2595 OK 2080 2077 2079 2101 C4' U E2596 OK 2103 2100 2102 2121 C4' G E2597 OK 2123 2120 2122 2144 C4' A E2598 OK 2146 2143 2145 2166 C4' G E2599 OK 2168 2165 2167 2189 C4' A E2600 OK 2191 2188 2190 2211 C4' C E2601 OK 2213 2210 2212 2231 C4' A E2602 OK 2233 2230 2232 2253 C4' G E2603 OK 2255 2252 2254 2283 C4' FHU E2604 OK 2282 2286 2285 2298 C4' U E2605 OK 2300 2297 2299 2318 C4' C E2606 OK 2320 2317 2319 2338 C4' G E2607 OK 2340 2337 2339 2361 C4' G E2608 OK 2363 2360 2362 4292 C4' A F2587 OK 4294 4291 4293 4314 C4' G F2588 OK 4316 4313 4315 4337 C4' A F2589 OK 4339 4336 4338 4359 C4' A F2590 OK 4361 4358 4360 4381 C4' C F2591 OK 4383 4380 4382 4401 C4' G F2592 OK 4403 4400 4402 4424 C4' U F2593 OK 4426 4423 4425 4444 C4' C F2594 OK 4446 4443 4445 4464 C4' G F2595 OK 4466 4463 4465 4487 C4' U F2596 OK 4489 4486 4488 4507 C4' G F2597 OK 4509 4506 4508 4530 C4' A F2598 OK 4532 4529 4531 4552 C4' G F2599 OK 4554 4551 4553 4575 C4' A F2600 OK 4577 4574 4576 4597 C4' C F2601 OK 4599 4596 4598 4617 C4' A F2602 OK 4619 4616 4618 4639 C4' G F2603 OK 4641 4638 4640 4669 C4' FHU F2604 OK 4668 4672 4671 4684 C4' U F2605 OK 4686 4683 4685 4704 C4' C F2606 OK 4706 4703 4705 4724 C4' G F2607 OK 4726 4723 4725 4747 C4' G F2608 OK 4749 4746 4748 6664 C4' A G2587 OK 6666 6663 6665 6686 C4' G G2588 OK 6688 6685 6687 6709 C4' A G2589 OK 6711 6708 6710 6731 C4' A G2590 OK 6733 6730 6732 6753 C4' C G2591 OK 6755 6752 6754 6773 C4' G G2592 OK 6775 6772 6774 6796 C4' U G2593 OK 6798 6795 6797 6816 C4' C G2594 OK 6818 6815 6817 6836 C4' G G2595 OK 6838 6835 6837 6859 C4' U G2596 OK 6861 6858 6860 6879 C4' G G2597 OK 6881 6878 6880 6902 C4' A G2598 OK 6904 6901 6903 6924 C4' G G2599 OK 6926 6923 6925 6947 C4' A G2600 OK 6949 6946 6948 6969 C4' C G2601 OK 6971 6968 6970 6989 C4' A G2602 OK 6991 6988 6990 7011 C4' G G2603 OK 7013 7010 7012 7041 C4' FHU G2604 OK 7040 7044 7043 7056 C4' U G2605 OK 7058 7055 7057 7076 C4' C G2606 OK 7078 7075 7077 7096 C4' G G2607 OK 7098 7095 7097 7119 C4' G G2608 OK 7121 7118 7120 9036 C4' A H2587 OK 9038 9035 9037 9058 C4' G H2588 OK 9060 9057 9059 9081 C4' A H2589 OK 9083 9080 9082 9103 C4' A H2590 OK 9105 9102 9104 9125 C4' C H2591 OK 9127 9124 9126 9145 C4' G H2592 OK 9147 9144 9146 9168 C4' U H2593 OK 9170 9167 9169 9188 C4' C H2594 OK 9190 9187 9189 9208 C4' G H2595 OK 9210 9207 9209 9231 C4' U H2596 OK 9233 9230 9232 9251 C4' G H2597 OK 9253 9250 9252 9274 C4' A H2598 OK 9276 9273 9275 9296 C4' G H2599 OK 9298 9295 9297 9319 C4' A H2600 OK 9321 9318 9320 9341 C4' C H2601 OK 9343 9340 9342 9361 C4' A H2602 OK 9363 9360 9362 9383 C4' G H2603 OK 9385 9382 9384 9413 C4' FHU H2604 OK 9412 9416 9415 9428 C4' U H2605 OK 9430 9427 9429 9448 C4' C H2606 OK 9450 9447 9449 9468 C4' G H2607 OK 9470 9467 9469 9491 C4' G H2608 OK 9493 9490 9492 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 1905 C5' A E2587 1904 1906 1927 C5' G E2588 1926 1928 1950 C5' A E2589 1949 1951 1972 C5' A E2590 1971 1973 1994 C5' C E2591 1993 1995 2014 C5' G E2592 2013 2015 2037 C5' U E2593 2036 2038 2057 C5' C E2594 2056 2058 2077 C5' G E2595 2076 2078 2100 C5' U E2596 2099 2101 2120 C5' G E2597 2119 2121 2143 C5' A E2598 2142 2144 2165 C5' G E2599 2164 2166 2188 C5' A E2600 2187 2189 2210 C5' C E2601 2209 2211 2230 C5' A E2602 2229 2231 2252 C5' G E2603 2251 2253 2286 C5' FHU E2604 2287 2283 2297 C5' U E2605 2296 2298 2317 C5' C E2606 2316 2318 2337 C5' G E2607 2336 2338 2360 C5' G E2608 2359 2361 4291 C5' A F2587 4290 4292 4313 C5' G F2588 4312 4314 4336 C5' A F2589 4335 4337 4358 C5' A F2590 4357 4359 4380 C5' C F2591 4379 4381 4400 C5' G F2592 4399 4401 4423 C5' U F2593 4422 4424 4443 C5' C F2594 4442 4444 4463 C5' G F2595 4462 4464 4486 C5' U F2596 4485 4487 4506 C5' G F2597 4505 4507 4529 C5' A F2598 4528 4530 4551 C5' G F2599 4550 4552 4574 C5' A F2600 4573 4575 4596 C5' C F2601 4595 4597 4616 C5' A F2602 4615 4617 4638 C5' G F2603 4637 4639 4672 C5' FHU F2604 4673 4669 4683 C5' U F2605 4682 4684 4703 C5' C F2606 4702 4704 4723 C5' G F2607 4722 4724 4746 C5' G F2608 4745 4747 6663 C5' A G2587 6662 6664 6685 C5' G G2588 6684 6686 6708 C5' A G2589 6707 6709 6730 C5' A G2590 6729 6731 6752 C5' C G2591 6751 6753 6772 C5' G G2592 6771 6773 6795 C5' U G2593 6794 6796 6815 C5' C G2594 6814 6816 6835 C5' G G2595 6834 6836 6858 C5' U G2596 6857 6859 6878 C5' G G2597 6877 6879 6901 C5' A G2598 6900 6902 6923 C5' G G2599 6922 6924 6946 C5' A G2600 6945 6947 6968 C5' C G2601 6967 6969 6988 C5' A G2602 6987 6989 7010 C5' G G2603 7009 7011 7044 C5' FHU G2604 7045 7041 7055 C5' U G2605 7054 7056 7075 C5' C G2606 7074 7076 7095 C5' G G2607 7094 7096 7118 C5' G G2608 7117 7119 9035 C5' A H2587 9034 9036 9057 C5' G H2588 9056 9058 9080 C5' A H2589 9079 9081 9102 C5' A H2590 9101 9103 9124 C5' C H2591 9123 9125 9144 C5' G H2592 9143 9145 9167 C5' U H2593 9166 9168 9187 C5' C H2594 9186 9188 9207 C5' G H2595 9206 9208 9230 C5' U H2596 9229 9231 9250 C5' G H2597 9249 9251 9273 C5' A H2598 9272 9274 9295 C5' G H2599 9294 9296 9318 C5' A H2600 9317 9319 9340 C5' C H2601 9339 9341 9360 C5' A H2602 9359 9361 9382 C5' G H2603 9381 9383 9416 C5' FHU H2604 9417 9413 9427 C5' U H2605 9426 9428 9447 C5' C H2606 9446 9448 9467 C5' G H2607 9466 9468 9490 C5' G H2608 9489 9491 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 1923 P G E2588 distorted distorted 1909 1924 1925 1926 1946 P A E2589 distorted distorted 1931 1947 1948 1949 1968 P A E2590 distorted distorted 1954 1969 1970 1971 1990 P C E2591 distorted distorted 1976 1991 1992 1993 2010 P G E2592 distorted distorted 1998 2011 2012 2013 2033 P U E2593 distorted distorted 2018 2034 2035 2036 2053 P C E2594 distorted distorted 2041 2054 2055 2056 2073 P G E2595 distorted distorted 2061 2074 2075 2076 2096 P U E2596 distorted distorted 2081 2097 2098 2099 2116 P G E2597 distorted distorted 2104 2117 2118 2119 2139 P A E2598 distorted distorted 2124 2140 2141 2142 2161 P G E2599 distorted distorted 2147 2162 2163 2164 2184 P A E2600 distorted distorted 2169 2185 2186 2187 2206 P C E2601 distorted distorted 2192 2207 2208 2209 2226 P A E2602 distorted distorted 2214 2227 2228 2229 2248 P G E2603 distorted distorted 2234 2249 2250 2251 2288 P FHU E2604 distorted distorted 2256 2289 2290 2287 2293 P U E2605 distorted distorted 2284 2294 2295 2296 2313 P C E2606 distorted distorted 2301 2314 2315 2316 2333 P G E2607 distorted distorted 2321 2334 2335 2336 2356 P G E2608 distorted distorted 2341 2357 2358 2359 4309 P G F2588 distorted distorted 4295 4310 4311 4312 4332 P A F2589 distorted distorted 4317 4333 4334 4335 4354 P A F2590 distorted distorted 4340 4355 4356 4357 4376 P C F2591 distorted distorted 4362 4377 4378 4379 4396 P G F2592 distorted distorted 4384 4397 4398 4399 4419 P U F2593 distorted distorted 4404 4420 4421 4422 4439 P C F2594 distorted distorted 4427 4440 4441 4442 4459 P G F2595 distorted distorted 4447 4460 4461 4462 4482 P U F2596 distorted distorted 4467 4483 4484 4485 4502 P G F2597 distorted distorted 4490 4503 4504 4505 4525 P A F2598 distorted distorted 4510 4526 4527 4528 4547 P G F2599 distorted distorted 4533 4548 4549 4550 4570 P A F2600 distorted distorted 4555 4571 4572 4573 4592 P C F2601 distorted distorted 4578 4593 4594 4595 4612 P A F2602 distorted distorted 4600 4613 4614 4615 4634 P G F2603 distorted distorted 4620 4635 4636 4637 4674 P FHU F2604 OK OK 4642 4675 4676 4673 4679 P U F2605 distorted distorted 4670 4680 4681 4682 4699 P C F2606 distorted distorted 4687 4700 4701 4702 4719 P G F2607 distorted distorted 4707 4720 4721 4722 4742 P G F2608 distorted distorted 4727 4743 4744 4745 6681 P G G2588 distorted distorted 6667 6682 6683 6684 6704 P A G2589 distorted distorted 6689 6705 6706 6707 6726 P A G2590 distorted distorted 6712 6727 6728 6729 6748 P C G2591 distorted distorted 6734 6749 6750 6751 6768 P G G2592 distorted distorted 6756 6769 6770 6771 6791 P U G2593 distorted distorted 6776 6792 6793 6794 6811 P C G2594 distorted distorted 6799 6812 6813 6814 6831 P G G2595 distorted distorted 6819 6832 6833 6834 6854 P U G2596 distorted distorted 6839 6855 6856 6857 6874 P G G2597 distorted distorted 6862 6875 6876 6877 6897 P A G2598 distorted distorted 6882 6898 6899 6900 6919 P G G2599 distorted distorted 6905 6920 6921 6922 6942 P A G2600 distorted distorted 6927 6943 6944 6945 6964 P C G2601 distorted distorted 6950 6965 6966 6967 6984 P A G2602 distorted distorted 6972 6985 6986 6987 7006 P G G2603 distorted distorted 6992 7007 7008 7009 7046 P FHU G2604 distorted distorted 7014 7047 7048 7045 7051 P U G2605 distorted distorted 7042 7052 7053 7054 7071 P C G2606 distorted distorted 7059 7072 7073 7074 7091 P G G2607 distorted distorted 7079 7092 7093 7094 7114 P G G2608 distorted distorted 7099 7115 7116 7117 9053 P G H2588 distorted distorted 9039 9054 9055 9056 9076 P A H2589 distorted distorted 9061 9077 9078 9079 9098 P A H2590 distorted distorted 9084 9099 9100 9101 9120 P C H2591 distorted distorted 9106 9121 9122 9123 9140 P G H2592 distorted distorted 9128 9141 9142 9143 9163 P U H2593 distorted distorted 9148 9164 9165 9166 9183 P C H2594 distorted distorted 9171 9184 9185 9186 9203 P G H2595 distorted distorted 9191 9204 9205 9206 9226 P U H2596 distorted distorted 9211 9227 9228 9229 9246 P G H2597 distorted distorted 9234 9247 9248 9249 9269 P A H2598 distorted distorted 9254 9270 9271 9272 9291 P G H2599 distorted distorted 9277 9292 9293 9294 9314 P A H2600 distorted distorted 9299 9315 9316 9317 9336 P C H2601 distorted distorted 9322 9337 9338 9339 9356 P A H2602 distorted distorted 9344 9357 9358 9359 9378 P G H2603 distorted distorted 9364 9379 9380 9381 9418 P FHU H2604 distorted distorted 9386 9419 9420 9417 9423 P U H2605 distorted distorted 9414 9424 9425 9426 9443 P C H2606 distorted distorted 9431 9444 9445 9446 9463 P G H2607 distorted distorted 9451 9464 9465 9466 9486 P G H2608 distorted distorted 9471 9487 9488 9489 ---------------------------------------------------------------------------------