ID code: '3BO4' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 21 C1' GTP B 4 beta 16 22 19 44 C1' G B 5 beta 39 45 42 67 C1' C B 6 beta 62 68 65 87 C1' C B 7 beta 82 88 85 107 C1' G B 8 beta 102 108 105 130 C1' U B 9 beta 125 131 128 150 C1' G B 10 beta 145 151 148 173 C1' U B 11 beta 168 174 171 193 C1' G B 12 beta 188 194 191 216 C1' C B 13 beta 211 217 214 236 C1' C B 14 beta 231 237 234 256 C1' U B 15 beta 251 257 254 276 C1' U B 16 beta 271 277 274 296 C1' G B 17 beta 291 297 294 319 C1' C B 18 beta 314 320 317 339 C1' G B 19 beta 334 340 337 362 C1' C B 20 beta 357 363 360 382 C1' C B 21 beta 377 383 380 402 C1' G B 22 beta 397 403 400 425 C1' G B 23 beta 420 426 423 448 C1' G B 24 beta 443 449 446 471 C1' A B 25 beta 466 472 469 493 C1' A B 26 beta 488 494 491 515 C1' A B 27 beta 510 516 513 537 C1' C B 28 beta 532 538 535 557 C1' C B 29 beta 552 558 555 577 C1' A B 30 beta 572 578 575 599 C1' C B 31 beta 594 600 597 619 C1' G B 32 beta 614 620 617 642 C1' C B 33 beta 637 643 640 662 C1' A B 34 beta 657 663 660 684 C1' A B 35 beta 679 685 682 706 C1' G B 36 beta 701 707 704 729 C1' G B 37 beta 724 730 727 752 C1' G B 38 beta 747 753 750 775 C1' A B 39 beta 770 776 773 797 C1' U B 40 beta 792 798 795 817 C1' G B 41 beta 812 818 815 840 C1' G B 42 beta 835 841 838 863 C1' U B 43 beta 858 864 861 883 C1' G B 44 beta 878 884 881 906 C1' U B 45 beta 901 907 904 926 C1' C B 46 beta 921 927 924 946 C1' A B 47 beta 941 947 944 968 C1' A B 48 beta 963 969 966 990 C1' A B 49 beta 985 991 988 1012 C1' U B 50 beta 1007 1013 1010 1032 C1' U B 51 beta 1027 1033 1030 1052 C1' C B 52 beta 1047 1053 1050 1072 C1' G B 53 beta 1067 1073 1070 1095 C1' G B 54 beta 1090 1096 1093 1118 C1' C B 55 beta 1113 1119 1116 1138 C1' G B 56 beta 1133 1139 1136 1161 C1' A B 57 beta 1156 1162 1159 1183 C1' A B 58 beta 1178 1184 1181 1205 C1' A B 59 beta 1200 1206 1203 1227 C1' C B 60 beta 1222 1228 1225 1247 C1' C B 61 beta 1242 1248 1245 1267 C1' U B 62 beta 1262 1268 1265 1287 C1' A B 63 beta 1282 1288 1285 1309 C1' A B 64 beta 1304 1310 1307 1331 C1' G B 65 beta 1326 1332 1329 1354 C1' C B 66 beta 1349 1355 1352 1374 C1' G B 67 beta 1369 1375 1372 1397 C1' C B 68 beta 1392 1398 1395 1417 C1' C B 69 beta 1412 1418 1415 1437 C1' C B 70 beta 1432 1438 1435 1457 C1' G B 71 beta 1452 1458 1455 1480 C1' C B 72 beta 1475 1481 1478 1500 C1' C B 73 beta 1495 1501 1498 1520 C1' C B 74 beta 1515 1521 1518 1540 C1' G B 75 beta 1535 1541 1538 1563 C1' G B 76 beta 1558 1564 1561 1586 C1' G B 77 beta 1581 1587 1584 1609 C1' C B 78 beta 1604 1610 1607 1629 C1' G B 79 beta 1624 1630 1627 1652 C1' U B 80 beta 1647 1653 1650 1672 C1' A B 81 beta 1667 1673 1670 1694 C1' U B 82 beta 1689 1695 1692 1714 C1' G B 83 beta 1709 1715 1712 1737 C1' G B 84 beta 1732 1738 1735 1760 C1' C B 85 beta 1755 1761 1758 1780 C1' A B 86 beta 1775 1781 1778 1802 C1' A B 87 beta 1797 1803 1800 1824 C1' C B 88 beta 1819 1825 1822 1844 C1' G B 89 beta 1839 1845 1842 1867 C1' C B 90 beta 1862 1868 1865 1887 C1' C B 91 beta 1882 1888 1885 1907 C1' G B 92 beta 1902 1908 1905 1930 C1' A B 93 beta 1925 1931 1928 1952 C1' G B 94 beta 1947 1953 1950 1975 C1' C B 95 beta 1970 1976 1973 1995 C1' C B 96 beta 1990 1996 1993 2015 C1' A B 97 beta 2010 2016 2013 2037 C1' A B 98 beta 2032 2038 2035 2059 C1' G B 99 beta 2054 2060 2057 2082 C1' C B 100 beta 2077 2083 2080 2102 C1' U B 101 beta 2097 2103 2100 2122 C1' U B 102 beta 2117 2123 2120 2142 C1' C B 103 beta 2137 2143 2140 2162 C1' G B 104 beta 2157 2163 2160 2185 C1' C B 105 beta 2180 2186 2183 2205 C1' A B 106 beta 2200 2206 2203 2227 C1' G B 107 beta 2222 2228 2225 2250 C1' C B1001 beta 2245 2251 2248 2270 C1' C B1002 beta 2265 2271 2268 2290 C1' A B1003 beta 2285 2291 2288 2312 C1' U B1004 beta 2307 2313 2310 2332 C1' U B1005 beta 2327 2333 2330 2352 C1' G B1006 beta 2347 2353 2350 2375 C1' C B1007 beta 2370 2376 2373 2395 C1' A B1008 beta 2390 2396 2393 2417 C1' C B1009 beta 2412 2418 2415 2437 C1' U B1010 beta 2432 2438 2435 2457 C1' C B1011 beta 2452 2458 2455 2477 C1' C B1012 beta 2472 2478 2475 2497 C1' G B1013 beta 2492 2498 2495 2520 C1' G B1014 beta 2515 2521 2518 2543 C1' C B 112 beta 2538 2544 2541 2563 C1' U B 113 beta 2558 2564 2561 2583 C1' G B 114 beta 2578 2584 2581 2606 C1' C B 115 beta 2601 2607 2604 2626 C1' G B 116 beta 2621 2627 2624 2649 C1' A B 117 beta 2644 2650 2647 2671 C1' U B 118 beta 2666 2672 2669 2691 C1' G B 119 beta 2686 2692 2689 2714 C1' A B 120 beta 2709 2715 2712 2736 C1' A B 121 beta 2731 2737 2734 2758 C1' G B 122 beta 2753 2759 2756 2781 C1' G B 123 beta 2776 2782 2779 2804 C1' U B 124 beta 2799 2805 2802 2824 C1' G B 125 beta 2819 2825 2822 2847 C1' U B 126 beta 2842 2848 2845 2867 C1' A B 127 beta 2862 2868 2865 2889 C1' G B 128 beta 2884 2890 2887 2912 C1' A B 129 beta 2907 2913 2910 2934 C1' G B 130 beta 2929 2935 2932 2957 C1' A B 131 beta 2952 2958 2955 2979 C1' C B 132 beta 2974 2980 2977 2999 C1' U B 133 beta 2994 3000 2997 3019 C1' A B 134 beta 3014 3020 3017 3041 C1' G B 135 beta 3036 3042 3039 3064 C1' A B 136 beta 3059 3065 3062 3086 C1' C B 137 beta 3081 3087 3084 3106 C1' G B 138 beta 3101 3107 3104 3129 C1' G B 139 beta 3124 3130 3127 3152 C1' C B 140 beta 3147 3153 3150 3172 C1' A B 141 beta 3167 3173 3170 3194 C1' C B 142 beta 3189 3195 3192 3214 C1' C B 143 beta 3209 3215 3212 3234 C1' C B 144 beta 3229 3235 3232 3254 C1' A B 145 beta 3249 3255 3252 3276 C1' C B 146 beta 3271 3277 3274 3296 C1' C B 147 beta 3291 3297 3294 3316 C1' U B 148 beta 3311 3317 3314 3336 C1' A B 149 beta 3331 3337 3334 3358 C1' A B 150 beta 3353 3359 3356 3380 C1' G B 151 beta 3375 3381 3378 3403 C1' G B 152 beta 3398 3404 3401 3426 C1' C B 153 beta 3421 3427 3424 3446 C1' A B 154 beta 3441 3447 3444 3468 C1' A B 155 beta 3463 3469 3466 3490 C1' A B 156 beta 3485 3491 3488 3512 C1' C B 157 beta 3507 3513 3510 3532 C1' G B 158 beta 3527 3533 3530 3555 C1' C B 159 beta 3550 3556 3553 3575 C1' U B 160 beta 3570 3576 3573 3595 C1' A B 161 beta 3590 3596 3593 3617 C1' U B 162 beta 3612 3618 3615 3637 C1' G B 163 beta 3632 3638 3635 3660 C1' G B 164 beta 3655 3661 3658 3683 C1' U B 165 beta 3678 3684 3681 3703 C1' G B 166 beta 3698 3704 3701 3726 C1' A B 167 beta 3721 3727 3724 3748 C1' A B 168 beta 3743 3749 3746 3770 C1' G B 169 beta 3765 3771 3768 3793 C1' G B 170 beta 3788 3794 3791 3816 C1' C B 171 beta 3811 3817 3814 3836 C1' A B 172 beta 3831 3837 3834 3858 C1' U B 173 beta 3853 3859 3856 3878 C1' A B 174 beta 3873 3879 3876 3900 C1' G B 175 beta 3895 3901 3898 3923 C1' U B 176 beta 3918 3924 3921 3943 C1' C B 177 beta 3938 3944 3941 3963 C1' C B 178 beta 3958 3964 3961 3983 C1' A B 179 beta 3978 3984 3981 4005 C1' G B 180 beta 4000 4006 4003 4028 C1' G B 181 beta 4023 4029 4026 4051 C1' G B 182 beta 4046 4052 4049 4074 C1' A B 183 beta 4069 4075 4072 4096 C1' G B 184 beta 4091 4097 4094 4119 C1' U B 185 beta 4114 4120 4117 4139 C1' G B 186 beta 4134 4140 4137 4162 C1' G B 187 beta 4157 4163 4160 4185 C1' C B 188 beta 4180 4186 4183 4205 C1' G B 189 beta 4200 4206 4203 4231 C1' A23 B 190 beta 4226 4232 4229 4251 C1' A C 191 beta 4246 4252 4249 4273 C1' A C 192 beta 4268 4274 4271 4295 C1' G C 193 beta 4290 4296 4293 4318 C1' C C 194 beta 4313 4319 4316 4338 C1' C C 195 beta 4333 4339 4336 4358 C1' A C 196 beta 4353 4359 4356 4380 C1' C C 197 beta 4375 4381 4378 4400 C1' A C 198 beta 4395 4401 4398 4422 C1' C C 199 beta 4417 4423 4420 4442 C1' A C 200 beta 4437 4443 4440 4464 C1' A C 201 beta 4459 4465 4462 4486 C1' A C 202 beta 4481 4487 4484 4508 C1' C C 203 beta 4503 4509 4506 4528 C1' C C 204 beta 4523 4529 4526 4548 C1' A C 205 beta 4543 4549 4546 4569 C1' DG C 206 beta 4565 4570 4568 4590 C1' C D 1 beta 4585 4591 4588 4610 C1' A D 2 beta 4605 4611 4608 4631 C1' DT D 3 beta 4627 4632 4630 4652 C1' A D 4 beta 4647 4653 4650 4674 C1' C D 5 beta 4669 4675 4672 4694 C1' G D 6 beta 4689 4695 4692 4717 C1' G D 7 beta 4712 4718 4715 4740 C1' C D 8 beta 4735 4741 4738 4760 C1' C D 9 beta 4755 4761 4758 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 19 C2' GTP B 4 OK 21 17 20 42 C2' G B 5 OK 44 40 43 65 C2' C B 6 OK 67 63 66 85 C2' C B 7 OK 87 83 86 105 C2' G B 8 OK 107 103 106 128 C2' U B 9 OK 130 126 129 148 C2' G B 10 OK 150 146 149 171 C2' U B 11 OK 173 169 172 191 C2' G B 12 OK 193 189 192 214 C2' C B 13 OK 216 212 215 234 C2' C B 14 OK 236 232 235 254 C2' U B 15 OK 256 252 255 274 C2' U B 16 OK 276 272 275 294 C2' G B 17 OK 296 292 295 317 C2' C B 18 OK 319 315 318 337 C2' G B 19 OK 339 335 338 360 C2' C B 20 OK 362 358 361 380 C2' C B 21 OK 382 378 381 400 C2' G B 22 OK 402 398 401 423 C2' G B 23 OK 425 421 424 446 C2' G B 24 OK 448 444 447 469 C2' A B 25 OK 471 467 470 491 C2' A B 26 OK 493 489 492 513 C2' A B 27 OK 515 511 514 535 C2' C B 28 OK 537 533 536 555 C2' C B 29 OK 557 553 556 575 C2' A B 30 OK 577 573 576 597 C2' C B 31 OK 599 595 598 617 C2' G B 32 OK 619 615 618 640 C2' C B 33 OK 642 638 641 660 C2' A B 34 OK 662 658 661 682 C2' A B 35 OK 684 680 683 704 C2' G B 36 OK 706 702 705 727 C2' G B 37 OK 729 725 728 750 C2' G B 38 OK 752 748 751 773 C2' A B 39 OK 775 771 774 795 C2' U B 40 OK 797 793 796 815 C2' G B 41 OK 817 813 816 838 C2' G B 42 OK 840 836 839 861 C2' U B 43 OK 863 859 862 881 C2' G B 44 OK 883 879 882 904 C2' U B 45 OK 906 902 905 924 C2' C B 46 OK 926 922 925 944 C2' A B 47 OK 946 942 945 966 C2' A B 48 OK 968 964 967 988 C2' A B 49 OK 990 986 989 1010 C2' U B 50 OK 1012 1008 1011 1030 C2' U B 51 OK 1032 1028 1031 1050 C2' C B 52 OK 1052 1048 1051 1070 C2' G B 53 OK 1072 1068 1071 1093 C2' G B 54 OK 1095 1091 1094 1116 C2' C B 55 OK 1118 1114 1117 1136 C2' G B 56 OK 1138 1134 1137 1159 C2' A B 57 OK 1161 1157 1160 1181 C2' A B 58 OK 1183 1179 1182 1203 C2' A B 59 OK 1205 1201 1204 1225 C2' C B 60 OK 1227 1223 1226 1245 C2' C B 61 OK 1247 1243 1246 1265 C2' U B 62 OK 1267 1263 1266 1285 C2' A B 63 OK 1287 1283 1286 1307 C2' A B 64 OK 1309 1305 1308 1329 C2' G B 65 OK 1331 1327 1330 1352 C2' C B 66 OK 1354 1350 1353 1372 C2' G B 67 OK 1374 1370 1373 1395 C2' C B 68 OK 1397 1393 1396 1415 C2' C B 69 OK 1417 1413 1416 1435 C2' C B 70 OK 1437 1433 1436 1455 C2' G B 71 OK 1457 1453 1456 1478 C2' C B 72 OK 1480 1476 1479 1498 C2' C B 73 OK 1500 1496 1499 1518 C2' C B 74 OK 1520 1516 1519 1538 C2' G B 75 OK 1540 1536 1539 1561 C2' G B 76 OK 1563 1559 1562 1584 C2' G B 77 OK 1586 1582 1585 1607 C2' C B 78 OK 1609 1605 1608 1627 C2' G B 79 OK 1629 1625 1628 1650 C2' U B 80 OK 1652 1648 1651 1670 C2' A B 81 OK 1672 1668 1671 1692 C2' U B 82 OK 1694 1690 1693 1712 C2' G B 83 OK 1714 1710 1713 1735 C2' G B 84 OK 1737 1733 1736 1758 C2' C B 85 OK 1760 1756 1759 1778 C2' A B 86 OK 1780 1776 1779 1800 C2' A B 87 OK 1802 1798 1801 1822 C2' C B 88 OK 1824 1820 1823 1842 C2' G B 89 OK 1844 1840 1843 1865 C2' C B 90 OK 1867 1863 1866 1885 C2' C B 91 OK 1887 1883 1886 1905 C2' G B 92 OK 1907 1903 1906 1928 C2' A B 93 OK 1930 1926 1929 1950 C2' G B 94 OK 1952 1948 1951 1973 C2' C B 95 OK 1975 1971 1974 1993 C2' C B 96 OK 1995 1991 1994 2013 C2' A B 97 OK 2015 2011 2014 2035 C2' A B 98 OK 2037 2033 2036 2057 C2' G B 99 OK 2059 2055 2058 2080 C2' C B 100 OK 2082 2078 2081 2100 C2' U B 101 OK 2102 2098 2101 2120 C2' U B 102 OK 2122 2118 2121 2140 C2' C B 103 OK 2142 2138 2141 2160 C2' G B 104 OK 2162 2158 2161 2183 C2' C B 105 OK 2185 2181 2184 2203 C2' A B 106 OK 2205 2201 2204 2225 C2' G B 107 OK 2227 2223 2226 2248 C2' C B1001 OK 2250 2246 2249 2268 C2' C B1002 OK 2270 2266 2269 2288 C2' A B1003 OK 2290 2286 2289 2310 C2' U B1004 OK 2312 2308 2311 2330 C2' U B1005 OK 2332 2328 2331 2350 C2' G B1006 OK 2352 2348 2351 2373 C2' C B1007 OK 2375 2371 2374 2393 C2' A B1008 OK 2395 2391 2394 2415 C2' C B1009 OK 2417 2413 2416 2435 C2' U B1010 OK 2437 2433 2436 2455 C2' C B1011 OK 2457 2453 2456 2475 C2' C B1012 OK 2477 2473 2476 2495 C2' G B1013 OK 2497 2493 2496 2518 C2' G B1014 OK 2520 2516 2519 2541 C2' C B 112 OK 2543 2539 2542 2561 C2' U B 113 OK 2563 2559 2562 2581 C2' G B 114 OK 2583 2579 2582 2604 C2' C B 115 OK 2606 2602 2605 2624 C2' G B 116 OK 2626 2622 2625 2647 C2' A B 117 OK 2649 2645 2648 2669 C2' U B 118 OK 2671 2667 2670 2689 C2' G B 119 OK 2691 2687 2690 2712 C2' A B 120 OK 2714 2710 2713 2734 C2' A B 121 OK 2736 2732 2735 2756 C2' G B 122 OK 2758 2754 2757 2779 C2' G B 123 OK 2781 2777 2780 2802 C2' U B 124 OK 2804 2800 2803 2822 C2' G B 125 OK 2824 2820 2823 2845 C2' U B 126 OK 2847 2843 2846 2865 C2' A B 127 OK 2867 2863 2866 2887 C2' G B 128 OK 2889 2885 2888 2910 C2' A B 129 OK 2912 2908 2911 2932 C2' G B 130 OK 2934 2930 2933 2955 C2' A B 131 OK 2957 2953 2956 2977 C2' C B 132 OK 2979 2975 2978 2997 C2' U B 133 OK 2999 2995 2998 3017 C2' A B 134 OK 3019 3015 3018 3039 C2' G B 135 OK 3041 3037 3040 3062 C2' A B 136 OK 3064 3060 3063 3084 C2' C B 137 OK 3086 3082 3085 3104 C2' G B 138 OK 3106 3102 3105 3127 C2' G B 139 OK 3129 3125 3128 3150 C2' C B 140 OK 3152 3148 3151 3170 C2' A B 141 OK 3172 3168 3171 3192 C2' C B 142 OK 3194 3190 3193 3212 C2' C B 143 OK 3214 3210 3213 3232 C2' C B 144 OK 3234 3230 3233 3252 C2' A B 145 OK 3254 3250 3253 3274 C2' C B 146 OK 3276 3272 3275 3294 C2' C B 147 OK 3296 3292 3295 3314 C2' U B 148 OK 3316 3312 3315 3334 C2' A B 149 OK 3336 3332 3335 3356 C2' A B 150 OK 3358 3354 3357 3378 C2' G B 151 OK 3380 3376 3379 3401 C2' G B 152 OK 3403 3399 3402 3424 C2' C B 153 OK 3426 3422 3425 3444 C2' A B 154 OK 3446 3442 3445 3466 C2' A B 155 OK 3468 3464 3467 3488 C2' A B 156 OK 3490 3486 3489 3510 C2' C B 157 OK 3512 3508 3511 3530 C2' G B 158 OK 3532 3528 3531 3553 C2' C B 159 OK 3555 3551 3554 3573 C2' U B 160 OK 3575 3571 3574 3593 C2' A B 161 OK 3595 3591 3594 3615 C2' U B 162 OK 3617 3613 3616 3635 C2' G B 163 OK 3637 3633 3636 3658 C2' G B 164 OK 3660 3656 3659 3681 C2' U B 165 OK 3683 3679 3682 3701 C2' G B 166 OK 3703 3699 3702 3724 C2' A B 167 OK 3726 3722 3725 3746 C2' A B 168 OK 3748 3744 3747 3768 C2' G B 169 OK 3770 3766 3769 3791 C2' G B 170 OK 3793 3789 3792 3814 C2' C B 171 OK 3816 3812 3815 3834 C2' A B 172 OK 3836 3832 3835 3856 C2' U B 173 OK 3858 3854 3857 3876 C2' A B 174 OK 3878 3874 3877 3898 C2' G B 175 OK 3900 3896 3899 3921 C2' U B 176 OK 3923 3919 3922 3941 C2' C B 177 OK 3943 3939 3942 3961 C2' C B 178 OK 3963 3959 3962 3981 C2' A B 179 OK 3983 3979 3982 4003 C2' G B 180 OK 4005 4001 4004 4026 C2' G B 181 OK 4028 4024 4027 4049 C2' G B 182 OK 4051 4047 4050 4072 C2' A B 183 OK 4074 4070 4073 4094 C2' G B 184 OK 4096 4092 4095 4117 C2' U B 185 OK 4119 4115 4118 4137 C2' G B 186 OK 4139 4135 4138 4160 C2' G B 187 OK 4162 4158 4161 4183 C2' C B 188 OK 4185 4181 4184 4203 C2' G B 189 OK 4205 4201 4204 4229 C2' A23 B 190 OK 4231 4227 4230 4249 C2' A C 191 OK 4251 4247 4250 4271 C2' A C 192 OK 4273 4269 4272 4293 C2' G C 193 OK 4295 4291 4294 4316 C2' C C 194 OK 4318 4314 4317 4336 C2' C C 195 OK 4338 4334 4337 4356 C2' A C 196 OK 4358 4354 4357 4378 C2' C C 197 OK 4380 4376 4379 4398 C2' A C 198 OK 4400 4396 4399 4420 C2' C C 199 OK 4422 4418 4421 4440 C2' A C 200 OK 4442 4438 4441 4462 C2' A C 201 OK 4464 4460 4463 4484 C2' A C 202 OK 4486 4482 4485 4506 C2' C C 203 OK 4508 4504 4507 4526 C2' C C 204 OK 4528 4524 4527 4546 C2' A C 205 OK 4548 4544 4547 4568 C2' DG C 206 4569 4566 4588 C2' C D 1 OK 4590 4586 4589 4608 C2' A D 2 OK 4610 4606 4609 4630 C2' DT D 3 4631 4628 4650 C2' A D 4 OK 4652 4648 4651 4672 C2' C D 5 OK 4674 4670 4673 4692 C2' G D 6 OK 4694 4690 4693 4715 C2' G D 7 OK 4717 4713 4716 4738 C2' C D 8 OK 4740 4736 4739 4758 C2' C D 9 OK 4760 4756 4759 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 17 C3' GTP B 4 OK 15 18 19 40 C3' G B 5 OK 38 41 42 63 C3' C B 6 OK 61 64 65 83 C3' C B 7 OK 81 84 85 103 C3' G B 8 OK 101 104 105 126 C3' U B 9 OK 124 127 128 146 C3' G B 10 OK 144 147 148 169 C3' U B 11 OK 167 170 171 189 C3' G B 12 OK 187 190 191 212 C3' C B 13 OK 210 213 214 232 C3' C B 14 OK 230 233 234 252 C3' U B 15 OK 250 253 254 272 C3' U B 16 OK 270 273 274 292 C3' G B 17 OK 290 293 294 315 C3' C B 18 OK 313 316 317 335 C3' G B 19 OK 333 336 337 358 C3' C B 20 OK 356 359 360 378 C3' C B 21 OK 376 379 380 398 C3' G B 22 OK 396 399 400 421 C3' G B 23 OK 419 422 423 444 C3' G B 24 OK 442 445 446 467 C3' A B 25 OK 465 468 469 489 C3' A B 26 OK 487 490 491 511 C3' A B 27 OK 509 512 513 533 C3' C B 28 OK 531 534 535 553 C3' C B 29 OK 551 554 555 573 C3' A B 30 OK 571 574 575 595 C3' C B 31 OK 593 596 597 615 C3' G B 32 OK 613 616 617 638 C3' C B 33 OK 636 639 640 658 C3' A B 34 OK 656 659 660 680 C3' A B 35 OK 678 681 682 702 C3' G B 36 OK 700 703 704 725 C3' G B 37 OK 723 726 727 748 C3' G B 38 OK 746 749 750 771 C3' A B 39 OK 769 772 773 793 C3' U B 40 OK 791 794 795 813 C3' G B 41 OK 811 814 815 836 C3' G B 42 OK 834 837 838 859 C3' U B 43 OK 857 860 861 879 C3' G B 44 OK 877 880 881 902 C3' U B 45 OK 900 903 904 922 C3' C B 46 OK 920 923 924 942 C3' A B 47 OK 940 943 944 964 C3' A B 48 OK 962 965 966 986 C3' A B 49 OK 984 987 988 1008 C3' U B 50 OK 1006 1009 1010 1028 C3' U B 51 OK 1026 1029 1030 1048 C3' C B 52 OK 1046 1049 1050 1068 C3' G B 53 OK 1066 1069 1070 1091 C3' G B 54 OK 1089 1092 1093 1114 C3' C B 55 OK 1112 1115 1116 1134 C3' G B 56 OK 1132 1135 1136 1157 C3' A B 57 OK 1155 1158 1159 1179 C3' A B 58 OK 1177 1180 1181 1201 C3' A B 59 OK 1199 1202 1203 1223 C3' C B 60 OK 1221 1224 1225 1243 C3' C B 61 OK 1241 1244 1245 1263 C3' U B 62 OK 1261 1264 1265 1283 C3' A B 63 OK 1281 1284 1285 1305 C3' A B 64 OK 1303 1306 1307 1327 C3' G B 65 OK 1325 1328 1329 1350 C3' C B 66 OK 1348 1351 1352 1370 C3' G B 67 OK 1368 1371 1372 1393 C3' C B 68 OK 1391 1394 1395 1413 C3' C B 69 OK 1411 1414 1415 1433 C3' C B 70 OK 1431 1434 1435 1453 C3' G B 71 OK 1451 1454 1455 1476 C3' C B 72 OK 1474 1477 1478 1496 C3' C B 73 OK 1494 1497 1498 1516 C3' C B 74 OK 1514 1517 1518 1536 C3' G B 75 OK 1534 1537 1538 1559 C3' G B 76 OK 1557 1560 1561 1582 C3' G B 77 OK 1580 1583 1584 1605 C3' C B 78 OK 1603 1606 1607 1625 C3' G B 79 OK 1623 1626 1627 1648 C3' U B 80 OK 1646 1649 1650 1668 C3' A B 81 OK 1666 1669 1670 1690 C3' U B 82 OK 1688 1691 1692 1710 C3' G B 83 OK 1708 1711 1712 1733 C3' G B 84 OK 1731 1734 1735 1756 C3' C B 85 OK 1754 1757 1758 1776 C3' A B 86 OK 1774 1777 1778 1798 C3' A B 87 OK 1796 1799 1800 1820 C3' C B 88 OK 1818 1821 1822 1840 C3' G B 89 OK 1838 1841 1842 1863 C3' C B 90 OK 1861 1864 1865 1883 C3' C B 91 OK 1881 1884 1885 1903 C3' G B 92 OK 1901 1904 1905 1926 C3' A B 93 OK 1924 1927 1928 1948 C3' G B 94 OK 1946 1949 1950 1971 C3' C B 95 OK 1969 1972 1973 1991 C3' C B 96 OK 1989 1992 1993 2011 C3' A B 97 OK 2009 2012 2013 2033 C3' A B 98 OK 2031 2034 2035 2055 C3' G B 99 OK 2053 2056 2057 2078 C3' C B 100 OK 2076 2079 2080 2098 C3' U B 101 OK 2096 2099 2100 2118 C3' U B 102 OK 2116 2119 2120 2138 C3' C B 103 OK 2136 2139 2140 2158 C3' G B 104 OK 2156 2159 2160 2181 C3' C B 105 OK 2179 2182 2183 2201 C3' A B 106 OK 2199 2202 2203 2223 C3' G B 107 OK 2221 2224 2225 2246 C3' C B1001 OK 2244 2247 2248 2266 C3' C B1002 OK 2264 2267 2268 2286 C3' A B1003 OK 2284 2287 2288 2308 C3' U B1004 OK 2306 2309 2310 2328 C3' U B1005 OK 2326 2329 2330 2348 C3' G B1006 OK 2346 2349 2350 2371 C3' C B1007 OK 2369 2372 2373 2391 C3' A B1008 OK 2389 2392 2393 2413 C3' C B1009 OK 2411 2414 2415 2433 C3' U B1010 OK 2431 2434 2435 2453 C3' C B1011 OK 2451 2454 2455 2473 C3' C B1012 OK 2471 2474 2475 2493 C3' G B1013 OK 2491 2494 2495 2516 C3' G B1014 OK 2514 2517 2518 2539 C3' C B 112 OK 2537 2540 2541 2559 C3' U B 113 OK 2557 2560 2561 2579 C3' G B 114 OK 2577 2580 2581 2602 C3' C B 115 OK 2600 2603 2604 2622 C3' G B 116 OK 2620 2623 2624 2645 C3' A B 117 OK 2643 2646 2647 2667 C3' U B 118 OK 2665 2668 2669 2687 C3' G B 119 OK 2685 2688 2689 2710 C3' A B 120 OK 2708 2711 2712 2732 C3' A B 121 OK 2730 2733 2734 2754 C3' G B 122 OK 2752 2755 2756 2777 C3' G B 123 OK 2775 2778 2779 2800 C3' U B 124 OK 2798 2801 2802 2820 C3' G B 125 OK 2818 2821 2822 2843 C3' U B 126 OK 2841 2844 2845 2863 C3' A B 127 OK 2861 2864 2865 2885 C3' G B 128 OK 2883 2886 2887 2908 C3' A B 129 OK 2906 2909 2910 2930 C3' G B 130 OK 2928 2931 2932 2953 C3' A B 131 OK 2951 2954 2955 2975 C3' C B 132 OK 2973 2976 2977 2995 C3' U B 133 OK 2993 2996 2997 3015 C3' A B 134 OK 3013 3016 3017 3037 C3' G B 135 OK 3035 3038 3039 3060 C3' A B 136 OK 3058 3061 3062 3082 C3' C B 137 OK 3080 3083 3084 3102 C3' G B 138 OK 3100 3103 3104 3125 C3' G B 139 OK 3123 3126 3127 3148 C3' C B 140 OK 3146 3149 3150 3168 C3' A B 141 OK 3166 3169 3170 3190 C3' C B 142 OK 3188 3191 3192 3210 C3' C B 143 OK 3208 3211 3212 3230 C3' C B 144 OK 3228 3231 3232 3250 C3' A B 145 OK 3248 3251 3252 3272 C3' C B 146 OK 3270 3273 3274 3292 C3' C B 147 OK 3290 3293 3294 3312 C3' U B 148 OK 3310 3313 3314 3332 C3' A B 149 OK 3330 3333 3334 3354 C3' A B 150 OK 3352 3355 3356 3376 C3' G B 151 OK 3374 3377 3378 3399 C3' G B 152 OK 3397 3400 3401 3422 C3' C B 153 OK 3420 3423 3424 3442 C3' A B 154 OK 3440 3443 3444 3464 C3' A B 155 OK 3462 3465 3466 3486 C3' A B 156 OK 3484 3487 3488 3508 C3' C B 157 OK 3506 3509 3510 3528 C3' G B 158 OK 3526 3529 3530 3551 C3' C B 159 OK 3549 3552 3553 3571 C3' U B 160 OK 3569 3572 3573 3591 C3' A B 161 OK 3589 3592 3593 3613 C3' U B 162 OK 3611 3614 3615 3633 C3' G B 163 OK 3631 3634 3635 3656 C3' G B 164 OK 3654 3657 3658 3679 C3' U B 165 OK 3677 3680 3681 3699 C3' G B 166 OK 3697 3700 3701 3722 C3' A B 167 OK 3720 3723 3724 3744 C3' A B 168 OK 3742 3745 3746 3766 C3' G B 169 OK 3764 3767 3768 3789 C3' G B 170 OK 3787 3790 3791 3812 C3' C B 171 OK 3810 3813 3814 3832 C3' A B 172 OK 3830 3833 3834 3854 C3' U B 173 OK 3852 3855 3856 3874 C3' A B 174 OK 3872 3875 3876 3896 C3' G B 175 OK 3894 3897 3898 3919 C3' U B 176 OK 3917 3920 3921 3939 C3' C B 177 OK 3937 3940 3941 3959 C3' C B 178 OK 3957 3960 3961 3979 C3' A B 179 OK 3977 3980 3981 4001 C3' G B 180 OK 3999 4002 4003 4024 C3' G B 181 OK 4022 4025 4026 4047 C3' G B 182 OK 4045 4048 4049 4070 C3' A B 183 OK 4068 4071 4072 4092 C3' G B 184 OK 4090 4093 4094 4115 C3' U B 185 OK 4113 4116 4117 4135 C3' G B 186 OK 4133 4136 4137 4158 C3' G B 187 OK 4156 4159 4160 4181 C3' C B 188 OK 4179 4182 4183 4201 C3' G B 189 OK 4199 4202 4203 4227 C3' A23 B 190 OK 4225 4228 4229 4247 C3' A C 191 OK 4245 4248 4249 4269 C3' A C 192 OK 4267 4270 4271 4291 C3' G C 193 OK 4289 4292 4293 4314 C3' C C 194 OK 4312 4315 4316 4334 C3' C C 195 OK 4332 4335 4336 4354 C3' A C 196 OK 4352 4355 4356 4376 C3' C C 197 OK 4374 4377 4378 4396 C3' A C 198 OK 4394 4397 4398 4418 C3' C C 199 OK 4416 4419 4420 4438 C3' A C 200 OK 4436 4439 4440 4460 C3' A C 201 OK 4458 4461 4462 4482 C3' A C 202 OK 4480 4483 4484 4504 C3' C C 203 OK 4502 4505 4506 4524 C3' C C 204 OK 4522 4525 4526 4544 C3' A C 205 OK 4542 4545 4546 4566 C3' DG C 206 OK 4564 4567 4568 4586 C3' C D 1 OK 4584 4587 4588 4606 C3' A D 2 OK 4604 4607 4608 4628 C3' DT D 3 OK 4626 4629 4630 4648 C3' A D 4 OK 4646 4649 4650 4670 C3' C D 5 OK 4668 4671 4672 4690 C3' G D 6 OK 4688 4691 4692 4713 C3' G D 7 OK 4711 4714 4715 4736 C3' C D 8 OK 4734 4737 4738 4756 C3' C D 9 OK 4754 4757 4758 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 15 C4' GTP B 4 OK 17 14 16 38 C4' G B 5 OK 40 37 39 61 C4' C B 6 OK 63 60 62 81 C4' C B 7 OK 83 80 82 101 C4' G B 8 OK 103 100 102 124 C4' U B 9 OK 126 123 125 144 C4' G B 10 OK 146 143 145 167 C4' U B 11 OK 169 166 168 187 C4' G B 12 OK 189 186 188 210 C4' C B 13 OK 212 209 211 230 C4' C B 14 OK 232 229 231 250 C4' U B 15 OK 252 249 251 270 C4' U B 16 OK 272 269 271 290 C4' G B 17 OK 292 289 291 313 C4' C B 18 OK 315 312 314 333 C4' G B 19 OK 335 332 334 356 C4' C B 20 OK 358 355 357 376 C4' C B 21 OK 378 375 377 396 C4' G B 22 OK 398 395 397 419 C4' G B 23 OK 421 418 420 442 C4' G B 24 OK 444 441 443 465 C4' A B 25 OK 467 464 466 487 C4' A B 26 OK 489 486 488 509 C4' A B 27 OK 511 508 510 531 C4' C B 28 OK 533 530 532 551 C4' C B 29 OK 553 550 552 571 C4' A B 30 OK 573 570 572 593 C4' C B 31 OK 595 592 594 613 C4' G B 32 OK 615 612 614 636 C4' C B 33 OK 638 635 637 656 C4' A B 34 OK 658 655 657 678 C4' A B 35 OK 680 677 679 700 C4' G B 36 OK 702 699 701 723 C4' G B 37 OK 725 722 724 746 C4' G B 38 OK 748 745 747 769 C4' A B 39 OK 771 768 770 791 C4' U B 40 OK 793 790 792 811 C4' G B 41 OK 813 810 812 834 C4' G B 42 OK 836 833 835 857 C4' U B 43 OK 859 856 858 877 C4' G B 44 OK 879 876 878 900 C4' U B 45 OK 902 899 901 920 C4' C B 46 OK 922 919 921 940 C4' A B 47 OK 942 939 941 962 C4' A B 48 OK 964 961 963 984 C4' A B 49 OK 986 983 985 1006 C4' U B 50 OK 1008 1005 1007 1026 C4' U B 51 OK 1028 1025 1027 1046 C4' C B 52 OK 1048 1045 1047 1066 C4' G B 53 OK 1068 1065 1067 1089 C4' G B 54 OK 1091 1088 1090 1112 C4' C B 55 OK 1114 1111 1113 1132 C4' G B 56 OK 1134 1131 1133 1155 C4' A B 57 OK 1157 1154 1156 1177 C4' A B 58 OK 1179 1176 1178 1199 C4' A B 59 OK 1201 1198 1200 1221 C4' C B 60 OK 1223 1220 1222 1241 C4' C B 61 OK 1243 1240 1242 1261 C4' U B 62 OK 1263 1260 1262 1281 C4' A B 63 OK 1283 1280 1282 1303 C4' A B 64 OK 1305 1302 1304 1325 C4' G B 65 OK 1327 1324 1326 1348 C4' C B 66 OK 1350 1347 1349 1368 C4' G B 67 OK 1370 1367 1369 1391 C4' C B 68 OK 1393 1390 1392 1411 C4' C B 69 OK 1413 1410 1412 1431 C4' C B 70 OK 1433 1430 1432 1451 C4' G B 71 OK 1453 1450 1452 1474 C4' C B 72 OK 1476 1473 1475 1494 C4' C B 73 OK 1496 1493 1495 1514 C4' C B 74 OK 1516 1513 1515 1534 C4' G B 75 OK 1536 1533 1535 1557 C4' G B 76 OK 1559 1556 1558 1580 C4' G B 77 OK 1582 1579 1581 1603 C4' C B 78 OK 1605 1602 1604 1623 C4' G B 79 OK 1625 1622 1624 1646 C4' U B 80 OK 1648 1645 1647 1666 C4' A B 81 OK 1668 1665 1667 1688 C4' U B 82 OK 1690 1687 1689 1708 C4' G B 83 OK 1710 1707 1709 1731 C4' G B 84 OK 1733 1730 1732 1754 C4' C B 85 OK 1756 1753 1755 1774 C4' A B 86 OK 1776 1773 1775 1796 C4' A B 87 OK 1798 1795 1797 1818 C4' C B 88 OK 1820 1817 1819 1838 C4' G B 89 OK 1840 1837 1839 1861 C4' C B 90 OK 1863 1860 1862 1881 C4' C B 91 OK 1883 1880 1882 1901 C4' G B 92 OK 1903 1900 1902 1924 C4' A B 93 OK 1926 1923 1925 1946 C4' G B 94 OK 1948 1945 1947 1969 C4' C B 95 OK 1971 1968 1970 1989 C4' C B 96 OK 1991 1988 1990 2009 C4' A B 97 OK 2011 2008 2010 2031 C4' A B 98 OK 2033 2030 2032 2053 C4' G B 99 OK 2055 2052 2054 2076 C4' C B 100 OK 2078 2075 2077 2096 C4' U B 101 OK 2098 2095 2097 2116 C4' U B 102 OK 2118 2115 2117 2136 C4' C B 103 OK 2138 2135 2137 2156 C4' G B 104 OK 2158 2155 2157 2179 C4' C B 105 OK 2181 2178 2180 2199 C4' A B 106 OK 2201 2198 2200 2221 C4' G B 107 OK 2223 2220 2222 2244 C4' C B1001 OK 2246 2243 2245 2264 C4' C B1002 OK 2266 2263 2265 2284 C4' A B1003 OK 2286 2283 2285 2306 C4' U B1004 OK 2308 2305 2307 2326 C4' U B1005 OK 2328 2325 2327 2346 C4' G B1006 OK 2348 2345 2347 2369 C4' C B1007 OK 2371 2368 2370 2389 C4' A B1008 OK 2391 2388 2390 2411 C4' C B1009 OK 2413 2410 2412 2431 C4' U B1010 OK 2433 2430 2432 2451 C4' C B1011 OK 2453 2450 2452 2471 C4' C B1012 OK 2473 2470 2472 2491 C4' G B1013 OK 2493 2490 2492 2514 C4' G B1014 OK 2516 2513 2515 2537 C4' C B 112 OK 2539 2536 2538 2557 C4' U B 113 OK 2559 2556 2558 2577 C4' G B 114 OK 2579 2576 2578 2600 C4' C B 115 OK 2602 2599 2601 2620 C4' G B 116 OK 2622 2619 2621 2643 C4' A B 117 OK 2645 2642 2644 2665 C4' U B 118 OK 2667 2664 2666 2685 C4' G B 119 OK 2687 2684 2686 2708 C4' A B 120 OK 2710 2707 2709 2730 C4' A B 121 OK 2732 2729 2731 2752 C4' G B 122 OK 2754 2751 2753 2775 C4' G B 123 OK 2777 2774 2776 2798 C4' U B 124 OK 2800 2797 2799 2818 C4' G B 125 OK 2820 2817 2819 2841 C4' U B 126 OK 2843 2840 2842 2861 C4' A B 127 OK 2863 2860 2862 2883 C4' G B 128 OK 2885 2882 2884 2906 C4' A B 129 OK 2908 2905 2907 2928 C4' G B 130 OK 2930 2927 2929 2951 C4' A B 131 OK 2953 2950 2952 2973 C4' C B 132 OK 2975 2972 2974 2993 C4' U B 133 OK 2995 2992 2994 3013 C4' A B 134 OK 3015 3012 3014 3035 C4' G B 135 OK 3037 3034 3036 3058 C4' A B 136 OK 3060 3057 3059 3080 C4' C B 137 OK 3082 3079 3081 3100 C4' G B 138 OK 3102 3099 3101 3123 C4' G B 139 OK 3125 3122 3124 3146 C4' C B 140 OK 3148 3145 3147 3166 C4' A B 141 OK 3168 3165 3167 3188 C4' C B 142 OK 3190 3187 3189 3208 C4' C B 143 OK 3210 3207 3209 3228 C4' C B 144 OK 3230 3227 3229 3248 C4' A B 145 OK 3250 3247 3249 3270 C4' C B 146 OK 3272 3269 3271 3290 C4' C B 147 OK 3292 3289 3291 3310 C4' U B 148 OK 3312 3309 3311 3330 C4' A B 149 OK 3332 3329 3331 3352 C4' A B 150 OK 3354 3351 3353 3374 C4' G B 151 OK 3376 3373 3375 3397 C4' G B 152 OK 3399 3396 3398 3420 C4' C B 153 OK 3422 3419 3421 3440 C4' A B 154 OK 3442 3439 3441 3462 C4' A B 155 OK 3464 3461 3463 3484 C4' A B 156 OK 3486 3483 3485 3506 C4' C B 157 OK 3508 3505 3507 3526 C4' G B 158 OK 3528 3525 3527 3549 C4' C B 159 OK 3551 3548 3550 3569 C4' U B 160 OK 3571 3568 3570 3589 C4' A B 161 OK 3591 3588 3590 3611 C4' U B 162 OK 3613 3610 3612 3631 C4' G B 163 OK 3633 3630 3632 3654 C4' G B 164 OK 3656 3653 3655 3677 C4' U B 165 OK 3679 3676 3678 3697 C4' G B 166 OK 3699 3696 3698 3720 C4' A B 167 OK 3722 3719 3721 3742 C4' A B 168 OK 3744 3741 3743 3764 C4' G B 169 OK 3766 3763 3765 3787 C4' G B 170 OK 3789 3786 3788 3810 C4' C B 171 OK 3812 3809 3811 3830 C4' A B 172 OK 3832 3829 3831 3852 C4' U B 173 OK 3854 3851 3853 3872 C4' A B 174 OK 3874 3871 3873 3894 C4' G B 175 OK 3896 3893 3895 3917 C4' U B 176 OK 3919 3916 3918 3937 C4' C B 177 OK 3939 3936 3938 3957 C4' C B 178 OK 3959 3956 3958 3977 C4' A B 179 OK 3979 3976 3978 3999 C4' G B 180 OK 4001 3998 4000 4022 C4' G B 181 OK 4024 4021 4023 4045 C4' G B 182 OK 4047 4044 4046 4068 C4' A B 183 OK 4070 4067 4069 4090 C4' G B 184 OK 4092 4089 4091 4113 C4' U B 185 OK 4115 4112 4114 4133 C4' G B 186 OK 4135 4132 4134 4156 C4' G B 187 OK 4158 4155 4157 4179 C4' C B 188 OK 4181 4178 4180 4199 C4' G B 189 OK 4201 4198 4200 4225 C4' A23 B 190 OK 4227 4224 4226 4245 C4' A C 191 OK 4247 4244 4246 4267 C4' A C 192 OK 4269 4266 4268 4289 C4' G C 193 OK 4291 4288 4290 4312 C4' C C 194 OK 4314 4311 4313 4332 C4' C C 195 OK 4334 4331 4333 4352 C4' A C 196 OK 4354 4351 4353 4374 C4' C C 197 OK 4376 4373 4375 4394 C4' A C 198 OK 4396 4393 4395 4416 C4' C C 199 OK 4418 4415 4417 4436 C4' A C 200 OK 4438 4435 4437 4458 C4' A C 201 OK 4460 4457 4459 4480 C4' A C 202 OK 4482 4479 4481 4502 C4' C C 203 OK 4504 4501 4503 4522 C4' C C 204 OK 4524 4521 4523 4542 C4' A C 205 OK 4544 4541 4543 4564 C4' DG C 206 OK 4566 4563 4565 4584 C4' C D 1 OK 4586 4583 4585 4604 C4' A D 2 OK 4606 4603 4605 4626 C4' DT D 3 OK 4628 4625 4627 4646 C4' A D 4 OK 4648 4645 4647 4668 C4' C D 5 OK 4670 4667 4669 4688 C4' G D 6 OK 4690 4687 4689 4711 C4' G D 7 OK 4713 4710 4712 4734 C4' C D 8 OK 4736 4733 4735 4754 C4' C D 9 OK 4756 4753 4755 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 14 C5' GTP B 4 13 15 37 C5' G B 5 36 38 60 C5' C B 6 59 61 80 C5' C B 7 79 81 100 C5' G B 8 99 101 123 C5' U B 9 122 124 143 C5' G B 10 142 144 166 C5' U B 11 165 167 186 C5' G B 12 185 187 209 C5' C B 13 208 210 229 C5' C B 14 228 230 249 C5' U B 15 248 250 269 C5' U B 16 268 270 289 C5' G B 17 288 290 312 C5' C B 18 311 313 332 C5' G B 19 331 333 355 C5' C B 20 354 356 375 C5' C B 21 374 376 395 C5' G B 22 394 396 418 C5' G B 23 417 419 441 C5' G B 24 440 442 464 C5' A B 25 463 465 486 C5' A B 26 485 487 508 C5' A B 27 507 509 530 C5' C B 28 529 531 550 C5' C B 29 549 551 570 C5' A B 30 569 571 592 C5' C B 31 591 593 612 C5' G B 32 611 613 635 C5' C B 33 634 636 655 C5' A B 34 654 656 677 C5' A B 35 676 678 699 C5' G B 36 698 700 722 C5' G B 37 721 723 745 C5' G B 38 744 746 768 C5' A B 39 767 769 790 C5' U B 40 789 791 810 C5' G B 41 809 811 833 C5' G B 42 832 834 856 C5' U B 43 855 857 876 C5' G B 44 875 877 899 C5' U B 45 898 900 919 C5' C B 46 918 920 939 C5' A B 47 938 940 961 C5' A B 48 960 962 983 C5' A B 49 982 984 1005 C5' U B 50 1004 1006 1025 C5' U B 51 1024 1026 1045 C5' C B 52 1044 1046 1065 C5' G B 53 1064 1066 1088 C5' G B 54 1087 1089 1111 C5' C B 55 1110 1112 1131 C5' G B 56 1130 1132 1154 C5' A B 57 1153 1155 1176 C5' A B 58 1175 1177 1198 C5' A B 59 1197 1199 1220 C5' C B 60 1219 1221 1240 C5' C B 61 1239 1241 1260 C5' U B 62 1259 1261 1280 C5' A B 63 1279 1281 1302 C5' A B 64 1301 1303 1324 C5' G B 65 1323 1325 1347 C5' C B 66 1346 1348 1367 C5' G B 67 1366 1368 1390 C5' C B 68 1389 1391 1410 C5' C B 69 1409 1411 1430 C5' C B 70 1429 1431 1450 C5' G B 71 1449 1451 1473 C5' C B 72 1472 1474 1493 C5' C B 73 1492 1494 1513 C5' C B 74 1512 1514 1533 C5' G B 75 1532 1534 1556 C5' G B 76 1555 1557 1579 C5' G B 77 1578 1580 1602 C5' C B 78 1601 1603 1622 C5' G B 79 1621 1623 1645 C5' U B 80 1644 1646 1665 C5' A B 81 1664 1666 1687 C5' U B 82 1686 1688 1707 C5' G B 83 1706 1708 1730 C5' G B 84 1729 1731 1753 C5' C B 85 1752 1754 1773 C5' A B 86 1772 1774 1795 C5' A B 87 1794 1796 1817 C5' C B 88 1816 1818 1837 C5' G B 89 1836 1838 1860 C5' C B 90 1859 1861 1880 C5' C B 91 1879 1881 1900 C5' G B 92 1899 1901 1923 C5' A B 93 1922 1924 1945 C5' G B 94 1944 1946 1968 C5' C B 95 1967 1969 1988 C5' C B 96 1987 1989 2008 C5' A B 97 2007 2009 2030 C5' A B 98 2029 2031 2052 C5' G B 99 2051 2053 2075 C5' C B 100 2074 2076 2095 C5' U B 101 2094 2096 2115 C5' U B 102 2114 2116 2135 C5' C B 103 2134 2136 2155 C5' G B 104 2154 2156 2178 C5' C B 105 2177 2179 2198 C5' A B 106 2197 2199 2220 C5' G B 107 2219 2221 2243 C5' C B1001 2242 2244 2263 C5' C B1002 2262 2264 2283 C5' A B1003 2282 2284 2305 C5' U B1004 2304 2306 2325 C5' U B1005 2324 2326 2345 C5' G B1006 2344 2346 2368 C5' C B1007 2367 2369 2388 C5' A B1008 2387 2389 2410 C5' C B1009 2409 2411 2430 C5' U B1010 2429 2431 2450 C5' C B1011 2449 2451 2470 C5' C B1012 2469 2471 2490 C5' G B1013 2489 2491 2513 C5' G B1014 2512 2514 2536 C5' C B 112 2535 2537 2556 C5' U B 113 2555 2557 2576 C5' G B 114 2575 2577 2599 C5' C B 115 2598 2600 2619 C5' G B 116 2618 2620 2642 C5' A B 117 2641 2643 2664 C5' U B 118 2663 2665 2684 C5' G B 119 2683 2685 2707 C5' A B 120 2706 2708 2729 C5' A B 121 2728 2730 2751 C5' G B 122 2750 2752 2774 C5' G B 123 2773 2775 2797 C5' U B 124 2796 2798 2817 C5' G B 125 2816 2818 2840 C5' U B 126 2839 2841 2860 C5' A B 127 2859 2861 2882 C5' G B 128 2881 2883 2905 C5' A B 129 2904 2906 2927 C5' G B 130 2926 2928 2950 C5' A B 131 2949 2951 2972 C5' C B 132 2971 2973 2992 C5' U B 133 2991 2993 3012 C5' A B 134 3011 3013 3034 C5' G B 135 3033 3035 3057 C5' A B 136 3056 3058 3079 C5' C B 137 3078 3080 3099 C5' G B 138 3098 3100 3122 C5' G B 139 3121 3123 3145 C5' C B 140 3144 3146 3165 C5' A B 141 3164 3166 3187 C5' C B 142 3186 3188 3207 C5' C B 143 3206 3208 3227 C5' C B 144 3226 3228 3247 C5' A B 145 3246 3248 3269 C5' C B 146 3268 3270 3289 C5' C B 147 3288 3290 3309 C5' U B 148 3308 3310 3329 C5' A B 149 3328 3330 3351 C5' A B 150 3350 3352 3373 C5' G B 151 3372 3374 3396 C5' G B 152 3395 3397 3419 C5' C B 153 3418 3420 3439 C5' A B 154 3438 3440 3461 C5' A B 155 3460 3462 3483 C5' A B 156 3482 3484 3505 C5' C B 157 3504 3506 3525 C5' G B 158 3524 3526 3548 C5' C B 159 3547 3549 3568 C5' U B 160 3567 3569 3588 C5' A B 161 3587 3589 3610 C5' U B 162 3609 3611 3630 C5' G B 163 3629 3631 3653 C5' G B 164 3652 3654 3676 C5' U B 165 3675 3677 3696 C5' G B 166 3695 3697 3719 C5' A B 167 3718 3720 3741 C5' A B 168 3740 3742 3763 C5' G B 169 3762 3764 3786 C5' G B 170 3785 3787 3809 C5' C B 171 3808 3810 3829 C5' A B 172 3828 3830 3851 C5' U B 173 3850 3852 3871 C5' A B 174 3870 3872 3893 C5' G B 175 3892 3894 3916 C5' U B 176 3915 3917 3936 C5' C B 177 3935 3937 3956 C5' C B 178 3955 3957 3976 C5' A B 179 3975 3977 3998 C5' G B 180 3997 3999 4021 C5' G B 181 4020 4022 4044 C5' G B 182 4043 4045 4067 C5' A B 183 4066 4068 4089 C5' G B 184 4088 4090 4112 C5' U B 185 4111 4113 4132 C5' G B 186 4131 4133 4155 C5' G B 187 4154 4156 4178 C5' C B 188 4177 4179 4198 C5' G B 189 4197 4199 4224 C5' A23 B 190 4223 4225 4244 C5' A C 191 4243 4245 4266 C5' A C 192 4265 4267 4288 C5' G C 193 4287 4289 4311 C5' C C 194 4310 4312 4331 C5' C C 195 4330 4332 4351 C5' A C 196 4350 4352 4373 C5' C C 197 4372 4374 4393 C5' A C 198 4392 4394 4415 C5' C C 199 4414 4416 4435 C5' A C 200 4434 4436 4457 C5' A C 201 4456 4458 4479 C5' A C 202 4478 4480 4501 C5' C C 203 4500 4502 4521 C5' C C 204 4520 4522 4541 C5' A C 205 4540 4542 4563 C5' DG C 206 4562 4564 4583 C5' C D 1 4582 4584 4603 C5' A D 2 4602 4604 4625 C5' DT D 3 4624 4626 4645 C5' A D 4 4644 4646 4667 C5' C D 5 4666 4668 4687 C5' G D 6 4686 4688 4710 C5' G D 7 4709 4711 4733 C5' C D 8 4732 4734 4753 C5' C D 9 4752 4754 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 33 P G B 5 distorted distorted 18 34 35 36 56 P C B 6 distorted distorted 41 57 58 59 76 P C B 7 distorted distorted 64 77 78 79 96 P G B 8 distorted distorted 84 97 98 99 119 P U B 9 distorted distorted 104 120 121 122 139 P G B 10 distorted distorted 127 140 141 142 162 P U B 11 distorted distorted 147 163 164 165 182 P G B 12 distorted distorted 170 183 184 185 205 P C B 13 distorted distorted 190 206 207 208 225 P C B 14 distorted distorted 213 226 227 228 245 P U B 15 distorted distorted 233 246 247 248 265 P U B 16 distorted distorted 253 266 267 268 285 P G B 17 distorted distorted 273 286 287 288 308 P C B 18 distorted distorted 293 309 310 311 328 P G B 19 distorted distorted 316 329 330 331 351 P C B 20 distorted distorted 336 352 353 354 371 P C B 21 distorted distorted 359 372 373 374 391 P G B 22 distorted distorted 379 392 393 394 414 P G B 23 distorted distorted 399 415 416 417 437 P G B 24 distorted distorted 422 438 439 440 460 P A B 25 distorted distorted 445 461 462 463 482 P A B 26 distorted distorted 468 483 484 485 504 P A B 27 distorted distorted 490 505 506 507 526 P C B 28 distorted distorted 512 527 528 529 546 P C B 29 distorted distorted 534 547 548 549 566 P A B 30 distorted distorted 554 567 568 569 588 P C B 31 distorted distorted 574 589 590 591 608 P G B 32 distorted distorted 596 609 610 611 631 P C B 33 distorted distorted 616 632 633 634 651 P A B 34 distorted distorted 639 652 653 654 673 P A B 35 distorted distorted 659 674 675 676 695 P G B 36 distorted distorted 681 696 697 698 718 P G B 37 distorted distorted 703 719 720 721 741 P G B 38 distorted distorted 726 742 743 744 764 P A B 39 distorted distorted 749 765 766 767 786 P U B 40 distorted distorted 772 787 788 789 806 P G B 41 distorted distorted 794 807 808 809 829 P G B 42 distorted distorted 814 830 831 832 852 P U B 43 distorted distorted 837 853 854 855 872 P G B 44 distorted distorted 860 873 874 875 895 P U B 45 distorted distorted 880 896 897 898 915 P C B 46 distorted distorted 903 916 917 918 935 P A B 47 distorted distorted 923 936 937 938 957 P A B 48 distorted distorted 943 958 959 960 979 P A B 49 distorted distorted 965 980 981 982 1001 P U B 50 distorted distorted 987 1002 1003 1004 1021 P U B 51 distorted distorted 1009 1022 1023 1024 1041 P C B 52 distorted distorted 1029 1042 1043 1044 1061 P G B 53 distorted distorted 1049 1062 1063 1064 1084 P G B 54 distorted distorted 1069 1085 1086 1087 1107 P C B 55 distorted distorted 1092 1108 1109 1110 1127 P G B 56 distorted distorted 1115 1128 1129 1130 1150 P A B 57 distorted distorted 1135 1151 1152 1153 1172 P A B 58 distorted distorted 1158 1173 1174 1175 1194 P A B 59 distorted distorted 1180 1195 1196 1197 1216 P C B 60 distorted distorted 1202 1217 1218 1219 1236 P C B 61 distorted distorted 1224 1237 1238 1239 1256 P U B 62 distorted distorted 1244 1257 1258 1259 1276 P A B 63 distorted distorted 1264 1277 1278 1279 1298 P A B 64 distorted distorted 1284 1299 1300 1301 1320 P G B 65 distorted distorted 1306 1321 1322 1323 1343 P C B 66 distorted distorted 1328 1344 1345 1346 1363 P G B 67 distorted distorted 1351 1364 1365 1366 1386 P C B 68 distorted distorted 1371 1387 1388 1389 1406 P C B 69 distorted distorted 1394 1407 1408 1409 1426 P C B 70 distorted distorted 1414 1427 1428 1429 1446 P G B 71 distorted distorted 1434 1447 1448 1449 1469 P C B 72 distorted distorted 1454 1470 1471 1472 1489 P C B 73 distorted distorted 1477 1490 1491 1492 1509 P C B 74 distorted distorted 1497 1510 1511 1512 1529 P G B 75 distorted distorted 1517 1530 1531 1532 1552 P G B 76 distorted distorted 1537 1553 1554 1555 1575 P G B 77 distorted distorted 1560 1576 1577 1578 1598 P C B 78 distorted distorted 1583 1599 1600 1601 1618 P G B 79 distorted distorted 1606 1619 1620 1621 1641 P U B 80 distorted distorted 1626 1642 1643 1644 1661 P A B 81 distorted distorted 1649 1662 1663 1664 1683 P U B 82 distorted distorted 1669 1684 1685 1686 1703 P G B 83 distorted distorted 1691 1704 1705 1706 1726 P G B 84 distorted distorted 1711 1727 1728 1729 1749 P C B 85 distorted distorted 1734 1750 1751 1752 1769 P A B 86 distorted distorted 1757 1770 1771 1772 1791 P A B 87 distorted distorted 1777 1792 1793 1794 1813 P C B 88 distorted distorted 1799 1814 1815 1816 1833 P G B 89 distorted distorted 1821 1834 1835 1836 1856 P C B 90 distorted distorted 1841 1857 1858 1859 1876 P C B 91 distorted distorted 1864 1877 1878 1879 1896 P G B 92 distorted distorted 1884 1897 1898 1899 1919 P A B 93 distorted distorted 1904 1920 1921 1922 1941 P G B 94 distorted distorted 1927 1942 1943 1944 1964 P C B 95 distorted distorted 1949 1965 1966 1967 1984 P C B 96 distorted distorted 1972 1985 1986 1987 2004 P A B 97 distorted distorted 1992 2005 2006 2007 2026 P A B 98 distorted distorted 2012 2027 2028 2029 2048 P G B 99 distorted distorted 2034 2049 2050 2051 2071 P C B 100 distorted distorted 2056 2072 2073 2074 2091 P U B 101 distorted distorted 2079 2092 2093 2094 2111 P U B 102 distorted distorted 2099 2112 2113 2114 2131 P C B 103 distorted distorted 2119 2132 2133 2134 2151 P G B 104 distorted distorted 2139 2152 2153 2154 2174 P C B 105 distorted distorted 2159 2175 2176 2177 2194 P A B 106 distorted distorted 2182 2195 2196 2197 2216 P G B 107 distorted distorted 2202 2217 2218 2219 2239 P C B1001 distorted distorted 2224 2240 2241 2242 2259 P C B1002 distorted distorted 2247 2260 2261 2262 2279 P A B1003 distorted distorted 2267 2280 2281 2282 2301 P U B1004 distorted distorted 2287 2302 2303 2304 2321 P U B1005 distorted distorted 2309 2322 2323 2324 2341 P G B1006 distorted distorted 2329 2342 2343 2344 2364 P C B1007 distorted distorted 2349 2365 2366 2367 2384 P A B1008 distorted distorted 2372 2385 2386 2387 2406 P C B1009 distorted distorted 2392 2407 2408 2409 2426 P U B1010 distorted distorted 2414 2427 2428 2429 2446 P C B1011 distorted distorted 2434 2447 2448 2449 2466 P C B1012 distorted distorted 2454 2467 2468 2469 2486 P G B1013 distorted distorted 2474 2487 2488 2489 2509 P G B1014 distorted distorted 2494 2510 2511 2512 2532 P C B 112 distorted distorted 2517 2533 2534 2535 2552 P U B 113 distorted distorted 2540 2553 2554 2555 2572 P G B 114 distorted distorted 2560 2573 2574 2575 2595 P C B 115 distorted distorted 2580 2596 2597 2598 2615 P G B 116 distorted distorted 2603 2616 2617 2618 2638 P A B 117 distorted distorted 2623 2639 2640 2641 2660 P U B 118 distorted distorted 2646 2661 2662 2663 2680 P G B 119 distorted distorted 2668 2681 2682 2683 2703 P A B 120 distorted distorted 2688 2704 2705 2706 2725 P A B 121 distorted distorted 2711 2726 2727 2728 2747 P G B 122 distorted distorted 2733 2748 2749 2750 2770 P G B 123 distorted distorted 2755 2771 2772 2773 2793 P U B 124 distorted distorted 2778 2794 2795 2796 2813 P G B 125 distorted distorted 2801 2814 2815 2816 2836 P U B 126 distorted distorted 2821 2837 2838 2839 2856 P A B 127 distorted distorted 2844 2857 2858 2859 2878 P G B 128 distorted distorted 2864 2879 2880 2881 2901 P A B 129 distorted distorted 2886 2902 2903 2904 2923 P G B 130 distorted distorted 2909 2924 2925 2926 2946 P A B 131 distorted distorted 2931 2947 2948 2949 2968 P C B 132 distorted distorted 2954 2969 2970 2971 2988 P U B 133 distorted distorted 2976 2989 2990 2991 3008 P A B 134 distorted distorted 2996 3009 3010 3011 3030 P G B 135 distorted distorted 3016 3031 3032 3033 3053 P A B 136 distorted distorted 3038 3054 3055 3056 3075 P C B 137 distorted distorted 3061 3076 3077 3078 3095 P G B 138 distorted distorted 3083 3096 3097 3098 3118 P G B 139 distorted distorted 3103 3119 3120 3121 3141 P C B 140 distorted distorted 3126 3142 3143 3144 3161 P A B 141 distorted distorted 3149 3162 3163 3164 3183 P C B 142 distorted distorted 3169 3184 3185 3186 3203 P C B 143 distorted distorted 3191 3204 3205 3206 3223 P C B 144 distorted distorted 3211 3224 3225 3226 3243 P A B 145 distorted distorted 3231 3244 3245 3246 3265 P C B 146 distorted distorted 3251 3266 3267 3268 3285 P C B 147 distorted distorted 3273 3286 3287 3288 3305 P U B 148 distorted distorted 3293 3306 3307 3308 3325 P A B 149 distorted distorted 3313 3326 3327 3328 3347 P A B 150 distorted distorted 3333 3348 3349 3350 3369 P G B 151 distorted distorted 3355 3370 3371 3372 3392 P G B 152 distorted distorted 3377 3393 3394 3395 3415 P C B 153 distorted distorted 3400 3416 3417 3418 3435 P A B 154 distorted distorted 3423 3436 3437 3438 3457 P A B 155 distorted distorted 3443 3458 3459 3460 3479 P A B 156 distorted distorted 3465 3480 3481 3482 3501 P C B 157 distorted distorted 3487 3502 3503 3504 3521 P G B 158 distorted distorted 3509 3522 3523 3524 3544 P C B 159 distorted distorted 3529 3545 3546 3547 3564 P U B 160 distorted distorted 3552 3565 3566 3567 3584 P A B 161 distorted distorted 3572 3585 3586 3587 3606 P U B 162 distorted distorted 3592 3607 3608 3609 3626 P G B 163 distorted distorted 3614 3627 3628 3629 3649 P G B 164 distorted distorted 3634 3650 3651 3652 3672 P U B 165 distorted distorted 3657 3673 3674 3675 3692 P G B 166 distorted distorted 3680 3693 3694 3695 3715 P A B 167 distorted distorted 3700 3716 3717 3718 3737 P A B 168 distorted distorted 3723 3738 3739 3740 3759 P G B 169 distorted distorted 3745 3760 3761 3762 3782 P G B 170 distorted distorted 3767 3783 3784 3785 3805 P C B 171 distorted distorted 3790 3806 3807 3808 3825 P A B 172 distorted distorted 3813 3826 3827 3828 3847 P U B 173 distorted distorted 3833 3848 3849 3850 3867 P A B 174 distorted distorted 3855 3868 3869 3870 3889 P G B 175 distorted distorted 3875 3890 3891 3892 3912 P U B 176 distorted distorted 3897 3913 3914 3915 3932 P C B 177 distorted distorted 3920 3933 3934 3935 3952 P C B 178 distorted distorted 3940 3953 3954 3955 3972 P A B 179 distorted distorted 3960 3973 3974 3975 3994 P G B 180 distorted distorted 3980 3995 3996 3997 4017 P G B 181 distorted distorted 4002 4018 4019 4020 4040 P G B 182 distorted distorted 4025 4041 4042 4043 4063 P A B 183 distorted distorted 4048 4064 4065 4066 4085 P G B 184 distorted distorted 4071 4086 4087 4088 4108 P U B 185 distorted distorted 4093 4109 4110 4111 4128 P G B 186 distorted distorted 4116 4129 4130 4131 4151 P G B 187 distorted distorted 4136 4152 4153 4154 4174 P C B 188 distorted distorted 4159 4175 4176 4177 4194 P G B 189 distorted distorted 4182 4195 4196 4197 4220 P A23 B 190 distorted distorted 4202 4221 4222 4223 4262 P A C 192 distorted distorted 4248 4263 4264 4265 4284 P G C 193 distorted distorted 4270 4285 4286 4287 4307 P C C 194 distorted distorted 4292 4308 4309 4310 4327 P C C 195 distorted distorted 4315 4328 4329 4330 4347 P A C 196 distorted distorted 4335 4348 4349 4350 4369 P C C 197 distorted distorted 4355 4370 4371 4372 4389 P A C 198 distorted distorted 4377 4390 4391 4392 4411 P C C 199 distorted distorted 4397 4412 4413 4414 4431 P A C 200 distorted distorted 4419 4432 4433 4434 4453 P A C 201 distorted distorted 4439 4454 4455 4456 4475 P A C 202 distorted distorted 4461 4476 4477 4478 4497 P C C 203 distorted distorted 4483 4498 4499 4500 4517 P C C 204 distorted distorted 4505 4518 4519 4520 4537 P A C 205 distorted distorted 4525 4538 4539 4540 4559 P DG C 206 distorted distorted 4545 4560 4561 4562 4599 P A D 2 distorted distorted 4587 4600 4601 4602 4621 P DT D 3 distorted distorted 4607 4622 4623 4624 4641 P A D 4 distorted distorted 4629 4642 4643 4644 4663 P C D 5 distorted distorted 4649 4664 4665 4666 4683 P G D 6 distorted distorted 4671 4684 4685 4686 4706 P G D 7 distorted distorted 4691 4707 4708 4709 4729 P C D 8 distorted distorted 4714 4730 4731 4732 4749 P C D 9 distorted distorted 4737 4750 4751 4752 ---------------------------------------------------------------------------------