ID code: '3BO0' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 12 C1' C D 79 beta 7 13 10 32 C1' G D 80 beta 27 33 30 55 C1' G D 81 beta 50 56 53 78 C1' U D 82 beta 73 79 76 98 C1' A D 83 beta 93 99 96 120 C1' A D 84 beta 115 121 118 142 C1' G D 85 beta 137 143 140 165 C1' G D 86 beta 160 166 163 188 C1' U D 87 beta 183 189 186 208 C1' G D 88 beta 203 209 206 231 C1' A D 89 beta 226 232 229 253 C1' U D 90 beta 248 254 251 273 C1' A D 91 beta 268 274 271 295 C1' U D 92 beta 290 296 293 315 C1' G D 93 beta 310 316 313 338 C1' A D 94 beta 333 339 336 360 C1' A D 95 beta 355 361 358 382 C1' C D 96 beta 377 383 380 402 C1' C D 97 beta 397 403 400 422 C1' G D 98 beta 417 423 420 445 C1' U D 99 beta 440 446 443 465 C1' U D 100 beta 460 466 463 485 C1' A D 101 beta 480 486 483 507 C1' U D 102 beta 502 508 505 527 C1' A D 103 beta 522 528 525 549 C1' A D 104 beta 544 550 547 571 C1' C D 105 beta 566 572 569 592 C1' A E 478 beta 587 593 590 614 C1' A E 479 beta 609 615 612 636 C1' A E 480 beta 631 637 634 658 C1' G E 481 beta 653 659 656 681 C1' A E 482 beta 676 682 679 703 C1' A E 483 beta 698 704 701 725 C1' C E 484 beta 720 726 723 745 C1' C E 485 beta 740 746 743 765 C1' C E 486 beta 760 766 763 785 C1' C E 487 beta 780 786 783 805 C1' G E 488 beta 800 806 803 828 C1' G E 489 beta 823 829 826 851 C1' C E 490 beta 846 852 849 871 C1' G E 491 beta 866 872 869 894 C1' A E 492 beta 889 895 892 916 C1' G E 493 beta 911 917 914 939 C1' G E 494 beta 934 940 937 962 C1' G E 495 beta 957 963 960 985 C1' G E 496 beta 980 986 983 1008 C1' A E 497 beta 1003 1009 1006 1030 C1' G E 498 beta 1025 1031 1028 1053 C1' U E 499 beta 1048 1054 1051 1073 C1' G E 500 beta 1068 1074 1071 1096 C1' A E 501 beta 1091 1097 1094 1118 C1' A E 502 beta 1113 1119 1116 1140 C1' A E 503 beta 1135 1141 1138 1162 C1' A E 504 beta 1157 1163 1160 1185 C1' A F1385 beta 1180 1186 1183 1207 C1' C F1386 beta 1202 1208 1205 1227 C1' A F1387 beta 1222 1228 1225 1249 C1' G F1388 beta 1244 1250 1247 1272 C1' G F1389 beta 1267 1273 1270 1295 C1' U F1390 beta 1290 1296 1293 1315 C1' U F1391 beta 1310 1316 1313 1335 C1' A F1392 beta 1330 1336 1333 1357 C1' A F1393 beta 1352 1358 1355 1379 C1' U F1394 beta 1374 1380 1377 1399 C1' A F1395 beta 1394 1400 1397 1421 C1' U F1396 beta 1416 1422 1419 1441 C1' U F1397 beta 1436 1442 1439 1461 C1' C F1398 beta 1456 1462 1459 1481 C1' C F1399 beta 1476 1482 1479 1501 C1' U F1400 beta 1496 1502 1499 1521 C1' G F1401 beta 1516 1522 1519 1544 C1' U F1402 beta 1539 1545 1542 1564 C1' A F1403 beta 1559 1565 1562 1587 C1' C G1518 beta 1582 1588 1585 1607 C1' G G1519 beta 1602 1608 1605 1630 C1' U G1520 beta 1625 1631 1628 1650 C1' G G1521 beta 1645 1651 1648 1673 C1' A G1522 beta 1668 1674 1671 1695 C1' U G1523 beta 1690 1696 1693 1715 C1' G G1524 beta 1710 1716 1713 1738 C1' A G1525 beta 1733 1739 1736 1760 C1' C G1526 beta 1755 1761 1758 1780 C1' G G1527 beta 1775 1781 1778 1803 C1' A G1528 beta 1798 1804 1801 1825 C1' G G1529 beta 1820 1826 1823 1848 C1' G G1530 beta 1843 1849 1846 1871 C1' C G1531 beta 1866 1872 1869 1891 C1' A G1532 beta 1886 1892 1889 1913 C1' C G1533 beta 1908 1914 1911 1933 C1' U G1534 beta 1928 1934 1931 1953 C1' A G1535 beta 1948 1954 1951 1975 C1' C G1536 beta 1970 1976 1973 1995 C1' G G1537 beta 1990 1996 1993 2018 C1' G G1538 beta 2013 2019 2016 2041 C1' U G1539 beta 2036 2042 2039 2061 C1' G G1540 beta 2056 2062 2059 2084 C1' C G1541 beta 2079 2085 2082 2104 C1' U G1542 beta 2099 2105 2102 2124 C1' G G1543 beta 2119 2125 2122 2147 C1' A G1544 beta 2142 2148 2145 2169 C1' A G1545 beta 2164 2170 2167 2191 C1' G G1546 beta 2186 2192 2189 2214 C1' C G1547 beta 2209 2215 2212 2234 C1' A G1548 beta 2229 2235 2232 2256 C1' A G1549 beta 2251 2257 2254 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 10 C2' C D 79 OK 12 8 11 30 C2' G D 80 OK 32 28 31 53 C2' G D 81 OK 55 51 54 76 C2' U D 82 OK 78 74 77 96 C2' A D 83 OK 98 94 97 118 C2' A D 84 OK 120 116 119 140 C2' G D 85 OK 142 138 141 163 C2' G D 86 OK 165 161 164 186 C2' U D 87 OK 188 184 187 206 C2' G D 88 OK 208 204 207 229 C2' A D 89 OK 231 227 230 251 C2' U D 90 OK 253 249 252 271 C2' A D 91 OK 273 269 272 293 C2' U D 92 OK 295 291 294 313 C2' G D 93 OK 315 311 314 336 C2' A D 94 OK 338 334 337 358 C2' A D 95 OK 360 356 359 380 C2' C D 96 OK 382 378 381 400 C2' C D 97 OK 402 398 401 420 C2' G D 98 OK 422 418 421 443 C2' U D 99 OK 445 441 444 463 C2' U D 100 OK 465 461 464 483 C2' A D 101 OK 485 481 484 505 C2' U D 102 OK 507 503 506 525 C2' A D 103 OK 527 523 526 547 C2' A D 104 OK 549 545 548 569 C2' C D 105 OK 571 567 570 590 C2' A E 478 OK 592 588 591 612 C2' A E 479 OK 614 610 613 634 C2' A E 480 OK 636 632 635 656 C2' G E 481 OK 658 654 657 679 C2' A E 482 OK 681 677 680 701 C2' A E 483 OK 703 699 702 723 C2' C E 484 OK 725 721 724 743 C2' C E 485 OK 745 741 744 763 C2' C E 486 OK 765 761 764 783 C2' C E 487 OK 785 781 784 803 C2' G E 488 OK 805 801 804 826 C2' G E 489 OK 828 824 827 849 C2' C E 490 OK 851 847 850 869 C2' G E 491 OK 871 867 870 892 C2' A E 492 OK 894 890 893 914 C2' G E 493 OK 916 912 915 937 C2' G E 494 OK 939 935 938 960 C2' G E 495 OK 962 958 961 983 C2' G E 496 OK 985 981 984 1006 C2' A E 497 OK 1008 1004 1007 1028 C2' G E 498 OK 1030 1026 1029 1051 C2' U E 499 OK 1053 1049 1052 1071 C2' G E 500 OK 1073 1069 1072 1094 C2' A E 501 OK 1096 1092 1095 1116 C2' A E 502 OK 1118 1114 1117 1138 C2' A E 503 OK 1140 1136 1139 1160 C2' A E 504 OK 1162 1158 1161 1183 C2' A F1385 OK 1185 1181 1184 1205 C2' C F1386 OK 1207 1203 1206 1225 C2' A F1387 OK 1227 1223 1226 1247 C2' G F1388 OK 1249 1245 1248 1270 C2' G F1389 OK 1272 1268 1271 1293 C2' U F1390 OK 1295 1291 1294 1313 C2' U F1391 OK 1315 1311 1314 1333 C2' A F1392 OK 1335 1331 1334 1355 C2' A F1393 OK 1357 1353 1356 1377 C2' U F1394 OK 1379 1375 1378 1397 C2' A F1395 OK 1399 1395 1398 1419 C2' U F1396 OK 1421 1417 1420 1439 C2' U F1397 OK 1441 1437 1440 1459 C2' C F1398 OK 1461 1457 1460 1479 C2' C F1399 OK 1481 1477 1480 1499 C2' U F1400 OK 1501 1497 1500 1519 C2' G F1401 OK 1521 1517 1520 1542 C2' U F1402 OK 1544 1540 1543 1562 C2' A F1403 OK 1564 1560 1563 1585 C2' C G1518 OK 1587 1583 1586 1605 C2' G G1519 OK 1607 1603 1606 1628 C2' U G1520 OK 1630 1626 1629 1648 C2' G G1521 OK 1650 1646 1649 1671 C2' A G1522 OK 1673 1669 1672 1693 C2' U G1523 OK 1695 1691 1694 1713 C2' G G1524 OK 1715 1711 1714 1736 C2' A G1525 OK 1738 1734 1737 1758 C2' C G1526 OK 1760 1756 1759 1778 C2' G G1527 OK 1780 1776 1779 1801 C2' A G1528 OK 1803 1799 1802 1823 C2' G G1529 OK 1825 1821 1824 1846 C2' G G1530 OK 1848 1844 1847 1869 C2' C G1531 OK 1871 1867 1870 1889 C2' A G1532 OK 1891 1887 1890 1911 C2' C G1533 OK 1913 1909 1912 1931 C2' U G1534 OK 1933 1929 1932 1951 C2' A G1535 OK 1953 1949 1952 1973 C2' C G1536 OK 1975 1971 1974 1993 C2' G G1537 OK 1995 1991 1994 2016 C2' G G1538 OK 2018 2014 2017 2039 C2' U G1539 OK 2041 2037 2040 2059 C2' G G1540 OK 2061 2057 2060 2082 C2' C G1541 OK 2084 2080 2083 2102 C2' U G1542 OK 2104 2100 2103 2122 C2' G G1543 OK 2124 2120 2123 2145 C2' A G1544 OK 2147 2143 2146 2167 C2' A G1545 OK 2169 2165 2168 2189 C2' G G1546 OK 2191 2187 2190 2212 C2' C G1547 OK 2214 2210 2213 2232 C2' A G1548 OK 2234 2230 2233 2254 C2' A G1549 OK 2256 2252 2255 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 8 C3' C D 79 OK 6 9 10 28 C3' G D 80 OK 26 29 30 51 C3' G D 81 OK 49 52 53 74 C3' U D 82 OK 72 75 76 94 C3' A D 83 OK 92 95 96 116 C3' A D 84 OK 114 117 118 138 C3' G D 85 OK 136 139 140 161 C3' G D 86 OK 159 162 163 184 C3' U D 87 OK 182 185 186 204 C3' G D 88 OK 202 205 206 227 C3' A D 89 OK 225 228 229 249 C3' U D 90 OK 247 250 251 269 C3' A D 91 OK 267 270 271 291 C3' U D 92 OK 289 292 293 311 C3' G D 93 OK 309 312 313 334 C3' A D 94 OK 332 335 336 356 C3' A D 95 OK 354 357 358 378 C3' C D 96 OK 376 379 380 398 C3' C D 97 OK 396 399 400 418 C3' G D 98 OK 416 419 420 441 C3' U D 99 OK 439 442 443 461 C3' U D 100 OK 459 462 463 481 C3' A D 101 OK 479 482 483 503 C3' U D 102 OK 501 504 505 523 C3' A D 103 OK 521 524 525 545 C3' A D 104 OK 543 546 547 567 C3' C D 105 OK 565 568 569 588 C3' A E 478 OK 586 589 590 610 C3' A E 479 OK 608 611 612 632 C3' A E 480 OK 630 633 634 654 C3' G E 481 OK 652 655 656 677 C3' A E 482 OK 675 678 679 699 C3' A E 483 OK 697 700 701 721 C3' C E 484 OK 719 722 723 741 C3' C E 485 OK 739 742 743 761 C3' C E 486 OK 759 762 763 781 C3' C E 487 OK 779 782 783 801 C3' G E 488 OK 799 802 803 824 C3' G E 489 OK 822 825 826 847 C3' C E 490 OK 845 848 849 867 C3' G E 491 OK 865 868 869 890 C3' A E 492 OK 888 891 892 912 C3' G E 493 OK 910 913 914 935 C3' G E 494 OK 933 936 937 958 C3' G E 495 OK 956 959 960 981 C3' G E 496 OK 979 982 983 1004 C3' A E 497 OK 1002 1005 1006 1026 C3' G E 498 OK 1024 1027 1028 1049 C3' U E 499 OK 1047 1050 1051 1069 C3' G E 500 OK 1067 1070 1071 1092 C3' A E 501 OK 1090 1093 1094 1114 C3' A E 502 OK 1112 1115 1116 1136 C3' A E 503 OK 1134 1137 1138 1158 C3' A E 504 OK 1156 1159 1160 1181 C3' A F1385 OK 1179 1182 1183 1203 C3' C F1386 OK 1201 1204 1205 1223 C3' A F1387 OK 1221 1224 1225 1245 C3' G F1388 OK 1243 1246 1247 1268 C3' G F1389 OK 1266 1269 1270 1291 C3' U F1390 OK 1289 1292 1293 1311 C3' U F1391 OK 1309 1312 1313 1331 C3' A F1392 OK 1329 1332 1333 1353 C3' A F1393 OK 1351 1354 1355 1375 C3' U F1394 OK 1373 1376 1377 1395 C3' A F1395 OK 1393 1396 1397 1417 C3' U F1396 OK 1415 1418 1419 1437 C3' U F1397 OK 1435 1438 1439 1457 C3' C F1398 OK 1455 1458 1459 1477 C3' C F1399 OK 1475 1478 1479 1497 C3' U F1400 OK 1495 1498 1499 1517 C3' G F1401 OK 1515 1518 1519 1540 C3' U F1402 OK 1538 1541 1542 1560 C3' A F1403 OK 1558 1561 1562 1583 C3' C G1518 OK 1581 1584 1585 1603 C3' G G1519 OK 1601 1604 1605 1626 C3' U G1520 OK 1624 1627 1628 1646 C3' G G1521 OK 1644 1647 1648 1669 C3' A G1522 OK 1667 1670 1671 1691 C3' U G1523 OK 1689 1692 1693 1711 C3' G G1524 OK 1709 1712 1713 1734 C3' A G1525 OK 1732 1735 1736 1756 C3' C G1526 OK 1754 1757 1758 1776 C3' G G1527 OK 1774 1777 1778 1799 C3' A G1528 OK 1797 1800 1801 1821 C3' G G1529 OK 1819 1822 1823 1844 C3' G G1530 OK 1842 1845 1846 1867 C3' C G1531 OK 1865 1868 1869 1887 C3' A G1532 OK 1885 1888 1889 1909 C3' C G1533 OK 1907 1910 1911 1929 C3' U G1534 OK 1927 1930 1931 1949 C3' A G1535 OK 1947 1950 1951 1971 C3' C G1536 OK 1969 1972 1973 1991 C3' G G1537 OK 1989 1992 1993 2014 C3' G G1538 OK 2012 2015 2016 2037 C3' U G1539 OK 2035 2038 2039 2057 C3' G G1540 OK 2055 2058 2059 2080 C3' C G1541 OK 2078 2081 2082 2100 C3' U G1542 OK 2098 2101 2102 2120 C3' G G1543 OK 2118 2121 2122 2143 C3' A G1544 OK 2141 2144 2145 2165 C3' A G1545 OK 2163 2166 2167 2187 C3' G G1546 OK 2185 2188 2189 2210 C3' C G1547 OK 2208 2211 2212 2230 C3' A G1548 OK 2228 2231 2232 2252 C3' A G1549 OK 2250 2253 2254 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 6 C4' C D 79 OK 8 5 7 26 C4' G D 80 OK 28 25 27 49 C4' G D 81 OK 51 48 50 72 C4' U D 82 OK 74 71 73 92 C4' A D 83 OK 94 91 93 114 C4' A D 84 OK 116 113 115 136 C4' G D 85 OK 138 135 137 159 C4' G D 86 OK 161 158 160 182 C4' U D 87 OK 184 181 183 202 C4' G D 88 OK 204 201 203 225 C4' A D 89 OK 227 224 226 247 C4' U D 90 OK 249 246 248 267 C4' A D 91 OK 269 266 268 289 C4' U D 92 OK 291 288 290 309 C4' G D 93 OK 311 308 310 332 C4' A D 94 OK 334 331 333 354 C4' A D 95 OK 356 353 355 376 C4' C D 96 OK 378 375 377 396 C4' C D 97 OK 398 395 397 416 C4' G D 98 OK 418 415 417 439 C4' U D 99 OK 441 438 440 459 C4' U D 100 OK 461 458 460 479 C4' A D 101 OK 481 478 480 501 C4' U D 102 OK 503 500 502 521 C4' A D 103 OK 523 520 522 543 C4' A D 104 OK 545 542 544 565 C4' C D 105 OK 567 564 566 586 C4' A E 478 OK 588 585 587 608 C4' A E 479 OK 610 607 609 630 C4' A E 480 OK 632 629 631 652 C4' G E 481 OK 654 651 653 675 C4' A E 482 OK 677 674 676 697 C4' A E 483 OK 699 696 698 719 C4' C E 484 OK 721 718 720 739 C4' C E 485 OK 741 738 740 759 C4' C E 486 OK 761 758 760 779 C4' C E 487 OK 781 778 780 799 C4' G E 488 OK 801 798 800 822 C4' G E 489 OK 824 821 823 845 C4' C E 490 OK 847 844 846 865 C4' G E 491 OK 867 864 866 888 C4' A E 492 OK 890 887 889 910 C4' G E 493 OK 912 909 911 933 C4' G E 494 OK 935 932 934 956 C4' G E 495 OK 958 955 957 979 C4' G E 496 OK 981 978 980 1002 C4' A E 497 OK 1004 1001 1003 1024 C4' G E 498 OK 1026 1023 1025 1047 C4' U E 499 OK 1049 1046 1048 1067 C4' G E 500 OK 1069 1066 1068 1090 C4' A E 501 OK 1092 1089 1091 1112 C4' A E 502 OK 1114 1111 1113 1134 C4' A E 503 OK 1136 1133 1135 1156 C4' A E 504 OK 1158 1155 1157 1179 C4' A F1385 OK 1181 1178 1180 1201 C4' C F1386 OK 1203 1200 1202 1221 C4' A F1387 OK 1223 1220 1222 1243 C4' G F1388 OK 1245 1242 1244 1266 C4' G F1389 OK 1268 1265 1267 1289 C4' U F1390 OK 1291 1288 1290 1309 C4' U F1391 OK 1311 1308 1310 1329 C4' A F1392 OK 1331 1328 1330 1351 C4' A F1393 OK 1353 1350 1352 1373 C4' U F1394 OK 1375 1372 1374 1393 C4' A F1395 OK 1395 1392 1394 1415 C4' U F1396 OK 1417 1414 1416 1435 C4' U F1397 OK 1437 1434 1436 1455 C4' C F1398 OK 1457 1454 1456 1475 C4' C F1399 OK 1477 1474 1476 1495 C4' U F1400 OK 1497 1494 1496 1515 C4' G F1401 OK 1517 1514 1516 1538 C4' U F1402 OK 1540 1537 1539 1558 C4' A F1403 OK 1560 1557 1559 1581 C4' C G1518 OK 1583 1580 1582 1601 C4' G G1519 OK 1603 1600 1602 1624 C4' U G1520 OK 1626 1623 1625 1644 C4' G G1521 OK 1646 1643 1645 1667 C4' A G1522 OK 1669 1666 1668 1689 C4' U G1523 OK 1691 1688 1690 1709 C4' G G1524 OK 1711 1708 1710 1732 C4' A G1525 OK 1734 1731 1733 1754 C4' C G1526 OK 1756 1753 1755 1774 C4' G G1527 OK 1776 1773 1775 1797 C4' A G1528 OK 1799 1796 1798 1819 C4' G G1529 OK 1821 1818 1820 1842 C4' G G1530 OK 1844 1841 1843 1865 C4' C G1531 OK 1867 1864 1866 1885 C4' A G1532 OK 1887 1884 1886 1907 C4' C G1533 OK 1909 1906 1908 1927 C4' U G1534 OK 1929 1926 1928 1947 C4' A G1535 OK 1949 1946 1948 1969 C4' C G1536 OK 1971 1968 1970 1989 C4' G G1537 OK 1991 1988 1990 2012 C4' G G1538 OK 2014 2011 2013 2035 C4' U G1539 OK 2037 2034 2036 2055 C4' G G1540 OK 2057 2054 2056 2078 C4' C G1541 OK 2080 2077 2079 2098 C4' U G1542 OK 2100 2097 2099 2118 C4' G G1543 OK 2120 2117 2119 2141 C4' A G1544 OK 2143 2140 2142 2163 C4' A G1545 OK 2165 2162 2164 2185 C4' G G1546 OK 2187 2184 2186 2208 C4' C G1547 OK 2210 2207 2209 2228 C4' A G1548 OK 2230 2227 2229 2250 C4' A G1549 OK 2252 2249 2251 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 5 C5' C D 79 4 6 25 C5' G D 80 24 26 48 C5' G D 81 47 49 71 C5' U D 82 70 72 91 C5' A D 83 90 92 113 C5' A D 84 112 114 135 C5' G D 85 134 136 158 C5' G D 86 157 159 181 C5' U D 87 180 182 201 C5' G D 88 200 202 224 C5' A D 89 223 225 246 C5' U D 90 245 247 266 C5' A D 91 265 267 288 C5' U D 92 287 289 308 C5' G D 93 307 309 331 C5' A D 94 330 332 353 C5' A D 95 352 354 375 C5' C D 96 374 376 395 C5' C D 97 394 396 415 C5' G D 98 414 416 438 C5' U D 99 437 439 458 C5' U D 100 457 459 478 C5' A D 101 477 479 500 C5' U D 102 499 501 520 C5' A D 103 519 521 542 C5' A D 104 541 543 564 C5' C D 105 563 565 585 C5' A E 478 584 586 607 C5' A E 479 606 608 629 C5' A E 480 628 630 651 C5' G E 481 650 652 674 C5' A E 482 673 675 696 C5' A E 483 695 697 718 C5' C E 484 717 719 738 C5' C E 485 737 739 758 C5' C E 486 757 759 778 C5' C E 487 777 779 798 C5' G E 488 797 799 821 C5' G E 489 820 822 844 C5' C E 490 843 845 864 C5' G E 491 863 865 887 C5' A E 492 886 888 909 C5' G E 493 908 910 932 C5' G E 494 931 933 955 C5' G E 495 954 956 978 C5' G E 496 977 979 1001 C5' A E 497 1000 1002 1023 C5' G E 498 1022 1024 1046 C5' U E 499 1045 1047 1066 C5' G E 500 1065 1067 1089 C5' A E 501 1088 1090 1111 C5' A E 502 1110 1112 1133 C5' A E 503 1132 1134 1155 C5' A E 504 1154 1156 1178 C5' A F1385 1177 1179 1200 C5' C F1386 1199 1201 1220 C5' A F1387 1219 1221 1242 C5' G F1388 1241 1243 1265 C5' G F1389 1264 1266 1288 C5' U F1390 1287 1289 1308 C5' U F1391 1307 1309 1328 C5' A F1392 1327 1329 1350 C5' A F1393 1349 1351 1372 C5' U F1394 1371 1373 1392 C5' A F1395 1391 1393 1414 C5' U F1396 1413 1415 1434 C5' U F1397 1433 1435 1454 C5' C F1398 1453 1455 1474 C5' C F1399 1473 1475 1494 C5' U F1400 1493 1495 1514 C5' G F1401 1513 1515 1537 C5' U F1402 1536 1538 1557 C5' A F1403 1556 1558 1580 C5' C G1518 1579 1581 1600 C5' G G1519 1599 1601 1623 C5' U G1520 1622 1624 1643 C5' G G1521 1642 1644 1666 C5' A G1522 1665 1667 1688 C5' U G1523 1687 1689 1708 C5' G G1524 1707 1709 1731 C5' A G1525 1730 1732 1753 C5' C G1526 1752 1754 1773 C5' G G1527 1772 1774 1796 C5' A G1528 1795 1797 1818 C5' G G1529 1817 1819 1841 C5' G G1530 1840 1842 1864 C5' C G1531 1863 1865 1884 C5' A G1532 1883 1885 1906 C5' C G1533 1905 1907 1926 C5' U G1534 1925 1927 1946 C5' A G1535 1945 1947 1968 C5' C G1536 1967 1969 1988 C5' G G1537 1987 1989 2011 C5' G G1538 2010 2012 2034 C5' U G1539 2033 2035 2054 C5' G G1540 2053 2055 2077 C5' C G1541 2076 2078 2097 C5' U G1542 2096 2098 2117 C5' G G1543 2116 2118 2140 C5' A G1544 2139 2141 2162 C5' A G1545 2161 2163 2184 C5' G G1546 2183 2185 2207 C5' C G1547 2206 2208 2227 C5' A G1548 2226 2228 2249 C5' A G1549 2248 2250 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 1 P C D 79 distorted distorted 2 3 4 21 P G D 80 distorted distorted 9 22 23 24 44 P G D 81 distorted distorted 29 45 46 47 67 P U D 82 distorted distorted 52 68 69 70 87 P A D 83 distorted distorted 75 88 89 90 109 P A D 84 distorted distorted 95 110 111 112 131 P G D 85 distorted distorted 117 132 133 134 154 P G D 86 distorted distorted 139 155 156 157 177 P U D 87 distorted distorted 162 178 179 180 197 P G D 88 distorted distorted 185 198 199 200 220 P A D 89 distorted distorted 205 221 222 223 242 P U D 90 distorted distorted 228 243 244 245 262 P A D 91 distorted distorted 250 263 264 265 284 P U D 92 distorted distorted 270 285 286 287 304 P G D 93 distorted distorted 292 305 306 307 327 P A D 94 distorted distorted 312 328 329 330 349 P A D 95 distorted distorted 335 350 351 352 371 P C D 96 distorted distorted 357 372 373 374 391 P C D 97 distorted distorted 379 392 393 394 411 P G D 98 distorted distorted 399 412 413 414 434 P U D 99 distorted distorted 419 435 436 437 454 P U D 100 distorted distorted 442 455 456 457 474 P A D 101 distorted distorted 462 475 476 477 496 P U D 102 distorted distorted 482 497 498 499 516 P A D 103 distorted distorted 504 517 518 519 538 P A D 104 distorted distorted 524 539 540 541 560 P C D 105 distorted distorted 546 561 562 563 581 P A E 478 distorted distorted 582 583 584 603 P A E 479 distorted distorted 589 604 605 606 625 P A E 480 distorted distorted 611 626 627 628 647 P G E 481 distorted distorted 633 648 649 650 670 P A E 482 distorted distorted 655 671 672 673 692 P A E 483 distorted distorted 678 693 694 695 714 P C E 484 distorted distorted 700 715 716 717 734 P C E 485 distorted distorted 722 735 736 737 754 P C E 486 distorted distorted 742 755 756 757 774 P C E 487 distorted distorted 762 775 776 777 794 P G E 488 distorted distorted 782 795 796 797 817 P G E 489 distorted distorted 802 818 819 820 840 P C E 490 distorted distorted 825 841 842 843 860 P G E 491 distorted distorted 848 861 862 863 883 P A E 492 distorted distorted 868 884 885 886 905 P G E 493 distorted distorted 891 906 907 908 928 P G E 494 distorted distorted 913 929 930 931 951 P G E 495 distorted distorted 936 952 953 954 974 P G E 496 distorted distorted 959 975 976 977 997 P A E 497 distorted distorted 982 998 999 1000 1019 P G E 498 distorted distorted 1005 1020 1021 1022 1042 P U E 499 distorted distorted 1027 1043 1044 1045 1062 P G E 500 distorted distorted 1050 1063 1064 1065 1085 P A E 501 distorted distorted 1070 1086 1087 1088 1107 P A E 502 distorted distorted 1093 1108 1109 1110 1129 P A E 503 distorted distorted 1115 1130 1131 1132 1151 P A E 504 distorted distorted 1137 1152 1153 1154 1174 P A F1385 distorted distorted 1175 1176 1177 1196 P C F1386 distorted distorted 1182 1197 1198 1199 1216 P A F1387 distorted distorted 1204 1217 1218 1219 1238 P G F1388 distorted distorted 1224 1239 1240 1241 1261 P G F1389 distorted distorted 1246 1262 1263 1264 1284 P U F1390 distorted distorted 1269 1285 1286 1287 1304 P U F1391 distorted distorted 1292 1305 1306 1307 1324 P A F1392 distorted distorted 1312 1325 1326 1327 1346 P A F1393 distorted distorted 1332 1347 1348 1349 1368 P U F1394 distorted distorted 1354 1369 1370 1371 1388 P A F1395 distorted distorted 1376 1389 1390 1391 1410 P U F1396 distorted distorted 1396 1411 1412 1413 1430 P U F1397 distorted distorted 1418 1431 1432 1433 1450 P C F1398 distorted distorted 1438 1451 1452 1453 1470 P C F1399 distorted distorted 1458 1471 1472 1473 1490 P U F1400 distorted distorted 1478 1491 1492 1493 1510 P G F1401 distorted distorted 1498 1511 1512 1513 1533 P U F1402 distorted distorted 1518 1534 1535 1536 1553 P A F1403 distorted distorted 1541 1554 1555 1556 1576 P C G1518 distorted distorted 1577 1578 1579 1596 P G G1519 distorted distorted 1584 1597 1598 1599 1619 P U G1520 distorted distorted 1604 1620 1621 1622 1639 P G G1521 distorted distorted 1627 1640 1641 1642 1662 P A G1522 distorted distorted 1647 1663 1664 1665 1684 P U G1523 distorted distorted 1670 1685 1686 1687 1704 P G G1524 distorted distorted 1692 1705 1706 1707 1727 P A G1525 distorted distorted 1712 1728 1729 1730 1749 P C G1526 distorted distorted 1735 1750 1751 1752 1769 P G G1527 distorted distorted 1757 1770 1771 1772 1792 P A G1528 distorted distorted 1777 1793 1794 1795 1814 P G G1529 distorted distorted 1800 1815 1816 1817 1837 P G G1530 distorted distorted 1822 1838 1839 1840 1860 P C G1531 distorted distorted 1845 1861 1862 1863 1880 P A G1532 distorted distorted 1868 1881 1882 1883 1902 P C G1533 distorted distorted 1888 1903 1904 1905 1922 P U G1534 distorted distorted 1910 1923 1924 1925 1942 P A G1535 distorted distorted 1930 1943 1944 1945 1964 P C G1536 distorted distorted 1950 1965 1966 1967 1984 P G G1537 distorted distorted 1972 1985 1986 1987 2007 P G G1538 distorted distorted 1992 2008 2009 2010 2030 P U G1539 distorted distorted 2015 2031 2032 2033 2050 P G G1540 distorted distorted 2038 2051 2052 2053 2073 P C G1541 distorted distorted 2058 2074 2075 2076 2093 P U G1542 distorted distorted 2081 2094 2095 2096 2113 P G G1543 distorted distorted 2101 2114 2115 2116 2136 P A G1544 distorted distorted 2121 2137 2138 2139 2158 P A G1545 distorted distorted 2144 2159 2160 2161 2180 P G G1546 distorted distorted 2166 2181 2182 2183 2203 P C G1547 distorted distorted 2188 2204 2205 2206 2223 P A G1548 distorted distorted 2211 2224 2225 2226 2245 P A G1549 distorted distorted 2231 2246 2247 2248 ---------------------------------------------------------------------------------