ID code: '3B0V' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 13 C1' G A 1 beta 8 14 11 36 C1' C A 2 beta 31 37 34 56 C1' C A 3 beta 51 57 54 76 C1' G A 4 beta 71 77 74 99 C1' A A 5 beta 94 100 97 121 C1' G A 6 beta 116 122 119 144 C1' G A 7 beta 139 145 142 167 C1' U A 8 beta 162 168 165 187 C1' A A 9 beta 182 188 185 209 C1' G A 10 beta 204 210 207 232 C1' C A 11 beta 227 233 230 252 C1' U A 12 beta 247 253 250 272 C1' C A 13 beta 267 273 270 292 C1' A A 14 beta 287 293 290 314 C1' G A 15 beta 309 315 312 337 C1' U A 16 beta 332 338 335 357 C1' U A 17 beta 352 358 355 377 C1' G A 18 beta 372 378 375 400 C1' G A 19 beta 395 401 398 421 C1' H2U A 20 beta 418 424 422 443 C1' A A 21 beta 438 444 441 465 C1' G A 22 beta 460 466 463 488 C1' A A 23 beta 483 489 486 510 C1' G A 24 beta 505 511 508 533 C1' C A 25 beta 528 534 531 553 C1' A A 26 beta 548 554 551 575 C1' U A 27 beta 570 576 573 595 C1' G A 28 beta 590 596 593 618 C1' C A 29 beta 613 619 616 638 C1' G A 30 beta 633 639 636 661 C1' A A 31 beta 656 662 659 683 C1' C A 32 beta 678 684 681 703 C1' U A 33 beta 698 704 701 723 C1' G A 34 beta 718 724 721 746 C1' A A 35 beta 741 747 744 768 C1' A A 36 beta 763 769 766 790 C1' A A 37 beta 785 791 788 812 C1' A A 38 beta 807 813 810 834 C1' U A 39 beta 829 835 832 854 C1' C A 40 beta 849 855 852 874 C1' G A 41 beta 869 875 872 897 C1' C A 42 beta 892 898 895 917 C1' A A 43 beta 912 918 915 939 C1' G A 44 beta 934 940 937 962 C1' U A 45 beta 957 963 960 982 C1' G A 46 beta 977 983 980 1005 C1' U A 47 beta 1000 1006 1003 1025 C1' C A 48 beta 1020 1026 1023 1045 C1' G A 49 beta 1040 1046 1043 1068 C1' G A 50 beta 1063 1069 1066 1091 C1' C A 51 beta 1086 1092 1089 1111 C1' G A 52 beta 1106 1112 1109 1134 C1' G A 53 beta 1129 1135 1132 1157 C1' U A 54 beta 1152 1158 1155 1177 C1' U A 55 beta 1172 1178 1175 1197 C1' C A 56 beta 1192 1198 1195 1217 C1' G A 57 beta 1212 1218 1215 1240 C1' A A 58 beta 1235 1241 1238 1262 C1' U A 59 beta 1257 1263 1260 1282 C1' U A 60 beta 1277 1283 1280 1302 C1' C A 61 beta 1297 1303 1300 1322 C1' C A 62 beta 1317 1323 1320 1342 C1' G A 63 beta 1337 1343 1340 1365 C1' C A 64 beta 1360 1366 1363 1385 C1' C A 65 beta 1380 1386 1383 1405 C1' C A 66 beta 1400 1406 1403 1425 C1' C A 67 beta 1420 1426 1423 1445 C1' U A 68 beta 1440 1446 1443 1465 C1' C A 69 beta 1460 1466 1463 1485 C1' G A 70 beta 1480 1486 1483 1508 C1' G A 71 beta 1503 1509 1506 1531 C1' C A 72 beta 1526 1532 1529 1551 C1' A A 73 beta 1546 1552 1549 1575 C1' G B 1 beta 1570 1576 1573 1598 C1' C B 2 beta 1593 1599 1596 1618 C1' C B 3 beta 1613 1619 1616 1638 C1' G B 4 beta 1633 1639 1636 1661 C1' A B 5 beta 1656 1662 1659 1683 C1' G B 6 beta 1678 1684 1681 1706 C1' G B 7 beta 1701 1707 1704 1729 C1' U B 8 beta 1724 1730 1727 1749 C1' A B 9 beta 1744 1750 1747 1771 C1' G B 10 beta 1766 1772 1769 1794 C1' C B 11 beta 1789 1795 1792 1814 C1' U B 12 beta 1809 1815 1812 1834 C1' C B 13 beta 1829 1835 1832 1854 C1' A B 14 beta 1849 1855 1852 1876 C1' G B 15 beta 1871 1877 1874 1899 C1' U B 16 beta 1894 1900 1897 1919 C1' U B 17 beta 1914 1920 1917 1939 C1' G B 18 beta 1934 1940 1937 1962 C1' G B 19 beta 1957 1963 1960 1983 C1' H2U B 20 beta 1980 1986 1984 2005 C1' A B 21 beta 2000 2006 2003 2027 C1' G B 22 beta 2022 2028 2025 2050 C1' A B 23 beta 2045 2051 2048 2072 C1' G B 24 beta 2067 2073 2070 2095 C1' C B 25 beta 2090 2096 2093 2115 C1' A B 26 beta 2110 2116 2113 2137 C1' U B 27 beta 2132 2138 2135 2157 C1' G B 28 beta 2152 2158 2155 2180 C1' C B 29 beta 2175 2181 2178 2200 C1' G B 30 beta 2195 2201 2198 2223 C1' A B 31 beta 2218 2224 2221 2245 C1' C B 32 beta 2240 2246 2243 2265 C1' U B 33 beta 2260 2266 2263 2285 C1' G B 34 beta 2280 2286 2283 2308 C1' A B 35 beta 2303 2309 2306 2330 C1' A B 36 beta 2325 2331 2328 2352 C1' A B 37 beta 2347 2353 2350 2374 C1' A B 38 beta 2369 2375 2372 2396 C1' U B 39 beta 2391 2397 2394 2416 C1' C B 40 beta 2411 2417 2414 2436 C1' G B 41 beta 2431 2437 2434 2459 C1' C B 42 beta 2454 2460 2457 2479 C1' A B 43 beta 2474 2480 2477 2501 C1' G B 44 beta 2496 2502 2499 2524 C1' U B 45 beta 2519 2525 2522 2544 C1' G B 46 beta 2539 2545 2542 2567 C1' U B 47 beta 2562 2568 2565 2587 C1' C B 48 beta 2582 2588 2585 2607 C1' G B 49 beta 2602 2608 2605 2630 C1' G B 50 beta 2625 2631 2628 2653 C1' C B 51 beta 2648 2654 2651 2673 C1' G B 52 beta 2668 2674 2671 2696 C1' G B 53 beta 2691 2697 2694 2719 C1' U B 54 beta 2714 2720 2717 2739 C1' U B 55 beta 2734 2740 2737 2759 C1' C B 56 beta 2754 2760 2757 2779 C1' G B 57 beta 2774 2780 2777 2802 C1' A B 58 beta 2797 2803 2800 2824 C1' U B 59 beta 2819 2825 2822 2844 C1' U B 60 beta 2839 2845 2842 2864 C1' C B 61 beta 2859 2865 2862 2884 C1' C B 62 beta 2879 2885 2882 2904 C1' G B 63 beta 2899 2905 2902 2927 C1' C B 64 beta 2922 2928 2925 2947 C1' C B 65 beta 2942 2948 2945 2967 C1' C B 66 beta 2962 2968 2965 2987 C1' C B 67 beta 2982 2988 2985 3007 C1' U B 68 beta 3002 3008 3005 3027 C1' C B 69 beta 3022 3028 3025 3047 C1' G B 70 beta 3042 3048 3045 3070 C1' G B 71 beta 3065 3071 3068 3093 C1' C B 72 beta 3088 3094 3091 3113 C1' A B 73 beta 3108 3114 3111 8165 C1' FMN C 400 8166 8196 C1' FMN D 400 8197 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 11 C2' G A 1 OK 13 9 12 34 C2' C A 2 OK 36 32 35 54 C2' C A 3 OK 56 52 55 74 C2' G A 4 OK 76 72 75 97 C2' A A 5 OK 99 95 98 119 C2' G A 6 OK 121 117 120 142 C2' G A 7 OK 144 140 143 165 C2' U A 8 OK 167 163 166 185 C2' A A 9 OK 187 183 186 207 C2' G A 10 OK 209 205 208 230 C2' C A 11 OK 232 228 231 250 C2' U A 12 OK 252 248 251 270 C2' C A 13 OK 272 268 271 290 C2' A A 14 OK 292 288 291 312 C2' G A 15 OK 314 310 313 335 C2' U A 16 OK 337 333 336 355 C2' U A 17 OK 357 353 356 375 C2' G A 18 OK 377 373 376 398 C2' G A 19 OK 400 396 399 422 C2' H2U A 20 OK 421 419 423 441 C2' A A 21 OK 443 439 442 463 C2' G A 22 OK 465 461 464 486 C2' A A 23 OK 488 484 487 508 C2' G A 24 OK 510 506 509 531 C2' C A 25 OK 533 529 532 551 C2' A A 26 OK 553 549 552 573 C2' U A 27 OK 575 571 574 593 C2' G A 28 OK 595 591 594 616 C2' C A 29 OK 618 614 617 636 C2' G A 30 OK 638 634 637 659 C2' A A 31 OK 661 657 660 681 C2' C A 32 OK 683 679 682 701 C2' U A 33 OK 703 699 702 721 C2' G A 34 OK 723 719 722 744 C2' A A 35 OK 746 742 745 766 C2' A A 36 OK 768 764 767 788 C2' A A 37 OK 790 786 789 810 C2' A A 38 OK 812 808 811 832 C2' U A 39 OK 834 830 833 852 C2' C A 40 OK 854 850 853 872 C2' G A 41 OK 874 870 873 895 C2' C A 42 OK 897 893 896 915 C2' A A 43 OK 917 913 916 937 C2' G A 44 OK 939 935 938 960 C2' U A 45 OK 962 958 961 980 C2' G A 46 OK 982 978 981 1003 C2' U A 47 OK 1005 1001 1004 1023 C2' C A 48 OK 1025 1021 1024 1043 C2' G A 49 OK 1045 1041 1044 1066 C2' G A 50 OK 1068 1064 1067 1089 C2' C A 51 OK 1091 1087 1090 1109 C2' G A 52 OK 1111 1107 1110 1132 C2' G A 53 OK 1134 1130 1133 1155 C2' U A 54 OK 1157 1153 1156 1175 C2' U A 55 OK 1177 1173 1176 1195 C2' C A 56 OK 1197 1193 1196 1215 C2' G A 57 OK 1217 1213 1216 1238 C2' A A 58 OK 1240 1236 1239 1260 C2' U A 59 OK 1262 1258 1261 1280 C2' U A 60 OK 1282 1278 1281 1300 C2' C A 61 OK 1302 1298 1301 1320 C2' C A 62 OK 1322 1318 1321 1340 C2' G A 63 OK 1342 1338 1341 1363 C2' C A 64 OK 1365 1361 1364 1383 C2' C A 65 OK 1385 1381 1384 1403 C2' C A 66 OK 1405 1401 1404 1423 C2' C A 67 OK 1425 1421 1424 1443 C2' U A 68 OK 1445 1441 1444 1463 C2' C A 69 OK 1465 1461 1464 1483 C2' G A 70 OK 1485 1481 1484 1506 C2' G A 71 OK 1508 1504 1507 1529 C2' C A 72 OK 1531 1527 1530 1549 C2' A A 73 OK 1551 1547 1550 1573 C2' G B 1 OK 1575 1571 1574 1596 C2' C B 2 OK 1598 1594 1597 1616 C2' C B 3 OK 1618 1614 1617 1636 C2' G B 4 OK 1638 1634 1637 1659 C2' A B 5 OK 1661 1657 1660 1681 C2' G B 6 OK 1683 1679 1682 1704 C2' G B 7 OK 1706 1702 1705 1727 C2' U B 8 OK 1729 1725 1728 1747 C2' A B 9 OK 1749 1745 1748 1769 C2' G B 10 OK 1771 1767 1770 1792 C2' C B 11 OK 1794 1790 1793 1812 C2' U B 12 OK 1814 1810 1813 1832 C2' C B 13 OK 1834 1830 1833 1852 C2' A B 14 OK 1854 1850 1853 1874 C2' G B 15 OK 1876 1872 1875 1897 C2' U B 16 OK 1899 1895 1898 1917 C2' U B 17 OK 1919 1915 1918 1937 C2' G B 18 OK 1939 1935 1938 1960 C2' G B 19 OK 1962 1958 1961 1984 C2' H2U B 20 OK 1983 1981 1985 2003 C2' A B 21 OK 2005 2001 2004 2025 C2' G B 22 OK 2027 2023 2026 2048 C2' A B 23 OK 2050 2046 2049 2070 C2' G B 24 OK 2072 2068 2071 2093 C2' C B 25 OK 2095 2091 2094 2113 C2' A B 26 OK 2115 2111 2114 2135 C2' U B 27 OK 2137 2133 2136 2155 C2' G B 28 OK 2157 2153 2156 2178 C2' C B 29 OK 2180 2176 2179 2198 C2' G B 30 OK 2200 2196 2199 2221 C2' A B 31 OK 2223 2219 2222 2243 C2' C B 32 OK 2245 2241 2244 2263 C2' U B 33 OK 2265 2261 2264 2283 C2' G B 34 OK 2285 2281 2284 2306 C2' A B 35 OK 2308 2304 2307 2328 C2' A B 36 OK 2330 2326 2329 2350 C2' A B 37 OK 2352 2348 2351 2372 C2' A B 38 OK 2374 2370 2373 2394 C2' U B 39 OK 2396 2392 2395 2414 C2' C B 40 OK 2416 2412 2415 2434 C2' G B 41 OK 2436 2432 2435 2457 C2' C B 42 OK 2459 2455 2458 2477 C2' A B 43 OK 2479 2475 2478 2499 C2' G B 44 OK 2501 2497 2500 2522 C2' U B 45 OK 2524 2520 2523 2542 C2' G B 46 OK 2544 2540 2543 2565 C2' U B 47 OK 2567 2563 2566 2585 C2' C B 48 OK 2587 2583 2586 2605 C2' G B 49 OK 2607 2603 2606 2628 C2' G B 50 OK 2630 2626 2629 2651 C2' C B 51 OK 2653 2649 2652 2671 C2' G B 52 OK 2673 2669 2672 2694 C2' G B 53 OK 2696 2692 2695 2717 C2' U B 54 OK 2719 2715 2718 2737 C2' U B 55 OK 2739 2735 2738 2757 C2' C B 56 OK 2759 2755 2758 2777 C2' G B 57 OK 2779 2775 2778 2800 C2' A B 58 OK 2802 2798 2801 2822 C2' U B 59 OK 2824 2820 2823 2842 C2' U B 60 OK 2844 2840 2843 2862 C2' C B 61 OK 2864 2860 2863 2882 C2' C B 62 OK 2884 2880 2883 2902 C2' G B 63 OK 2904 2900 2903 2925 C2' C B 64 OK 2927 2923 2926 2945 C2' C B 65 OK 2947 2943 2946 2965 C2' C B 66 OK 2967 2963 2966 2985 C2' C B 67 OK 2987 2983 2986 3005 C2' U B 68 OK 3007 3003 3006 3025 C2' C B 69 OK 3027 3023 3026 3045 C2' G B 70 OK 3047 3043 3046 3068 C2' G B 71 OK 3070 3066 3069 3091 C2' C B 72 OK 3093 3089 3092 3111 C2' A B 73 OK 3113 3109 3112 8166 C2' FMN C 400 OK 8165 8168 8167 8197 C2' FMN D 400 OK 8196 8199 8198 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 9 C3' G A 1 OK 7 10 11 32 C3' C A 2 OK 30 33 34 52 C3' C A 3 OK 50 53 54 72 C3' G A 4 OK 70 73 74 95 C3' A A 5 OK 93 96 97 117 C3' G A 6 OK 115 118 119 140 C3' G A 7 OK 138 141 142 163 C3' U A 8 OK 161 164 165 183 C3' A A 9 OK 181 184 185 205 C3' G A 10 OK 203 206 207 228 C3' C A 11 OK 226 229 230 248 C3' U A 12 OK 246 249 250 268 C3' C A 13 OK 266 269 270 288 C3' A A 14 OK 286 289 290 310 C3' G A 15 OK 308 311 312 333 C3' U A 16 OK 331 334 335 353 C3' U A 17 OK 351 354 355 373 C3' G A 18 OK 371 374 375 396 C3' G A 19 OK 394 397 398 419 C3' H2U A 20 OK 417 420 422 439 C3' A A 21 OK 437 440 441 461 C3' G A 22 OK 459 462 463 484 C3' A A 23 OK 482 485 486 506 C3' G A 24 OK 504 507 508 529 C3' C A 25 OK 527 530 531 549 C3' A A 26 OK 547 550 551 571 C3' U A 27 OK 569 572 573 591 C3' G A 28 OK 589 592 593 614 C3' C A 29 OK 612 615 616 634 C3' G A 30 OK 632 635 636 657 C3' A A 31 OK 655 658 659 679 C3' C A 32 OK 677 680 681 699 C3' U A 33 OK 697 700 701 719 C3' G A 34 OK 717 720 721 742 C3' A A 35 OK 740 743 744 764 C3' A A 36 OK 762 765 766 786 C3' A A 37 OK 784 787 788 808 C3' A A 38 OK 806 809 810 830 C3' U A 39 OK 828 831 832 850 C3' C A 40 OK 848 851 852 870 C3' G A 41 OK 868 871 872 893 C3' C A 42 OK 891 894 895 913 C3' A A 43 OK 911 914 915 935 C3' G A 44 OK 933 936 937 958 C3' U A 45 OK 956 959 960 978 C3' G A 46 OK 976 979 980 1001 C3' U A 47 OK 999 1002 1003 1021 C3' C A 48 OK 1019 1022 1023 1041 C3' G A 49 OK 1039 1042 1043 1064 C3' G A 50 OK 1062 1065 1066 1087 C3' C A 51 OK 1085 1088 1089 1107 C3' G A 52 OK 1105 1108 1109 1130 C3' G A 53 OK 1128 1131 1132 1153 C3' U A 54 OK 1151 1154 1155 1173 C3' U A 55 OK 1171 1174 1175 1193 C3' C A 56 OK 1191 1194 1195 1213 C3' G A 57 OK 1211 1214 1215 1236 C3' A A 58 OK 1234 1237 1238 1258 C3' U A 59 OK 1256 1259 1260 1278 C3' U A 60 OK 1276 1279 1280 1298 C3' C A 61 OK 1296 1299 1300 1318 C3' C A 62 OK 1316 1319 1320 1338 C3' G A 63 OK 1336 1339 1340 1361 C3' C A 64 OK 1359 1362 1363 1381 C3' C A 65 OK 1379 1382 1383 1401 C3' C A 66 OK 1399 1402 1403 1421 C3' C A 67 OK 1419 1422 1423 1441 C3' U A 68 OK 1439 1442 1443 1461 C3' C A 69 OK 1459 1462 1463 1481 C3' G A 70 OK 1479 1482 1483 1504 C3' G A 71 OK 1502 1505 1506 1527 C3' C A 72 OK 1525 1528 1529 1547 C3' A A 73 OK 1545 1548 1549 1571 C3' G B 1 OK 1569 1572 1573 1594 C3' C B 2 OK 1592 1595 1596 1614 C3' C B 3 OK 1612 1615 1616 1634 C3' G B 4 OK 1632 1635 1636 1657 C3' A B 5 OK 1655 1658 1659 1679 C3' G B 6 OK 1677 1680 1681 1702 C3' G B 7 OK 1700 1703 1704 1725 C3' U B 8 OK 1723 1726 1727 1745 C3' A B 9 OK 1743 1746 1747 1767 C3' G B 10 OK 1765 1768 1769 1790 C3' C B 11 OK 1788 1791 1792 1810 C3' U B 12 OK 1808 1811 1812 1830 C3' C B 13 OK 1828 1831 1832 1850 C3' A B 14 OK 1848 1851 1852 1872 C3' G B 15 OK 1870 1873 1874 1895 C3' U B 16 OK 1893 1896 1897 1915 C3' U B 17 OK 1913 1916 1917 1935 C3' G B 18 OK 1933 1936 1937 1958 C3' G B 19 OK 1956 1959 1960 1981 C3' H2U B 20 OK 1979 1982 1984 2001 C3' A B 21 OK 1999 2002 2003 2023 C3' G B 22 OK 2021 2024 2025 2046 C3' A B 23 OK 2044 2047 2048 2068 C3' G B 24 OK 2066 2069 2070 2091 C3' C B 25 OK 2089 2092 2093 2111 C3' A B 26 OK 2109 2112 2113 2133 C3' U B 27 OK 2131 2134 2135 2153 C3' G B 28 OK 2151 2154 2155 2176 C3' C B 29 OK 2174 2177 2178 2196 C3' G B 30 OK 2194 2197 2198 2219 C3' A B 31 OK 2217 2220 2221 2241 C3' C B 32 OK 2239 2242 2243 2261 C3' U B 33 OK 2259 2262 2263 2281 C3' G B 34 OK 2279 2282 2283 2304 C3' A B 35 OK 2302 2305 2306 2326 C3' A B 36 OK 2324 2327 2328 2348 C3' A B 37 OK 2346 2349 2350 2370 C3' A B 38 OK 2368 2371 2372 2392 C3' U B 39 OK 2390 2393 2394 2412 C3' C B 40 OK 2410 2413 2414 2432 C3' G B 41 OK 2430 2433 2434 2455 C3' C B 42 OK 2453 2456 2457 2475 C3' A B 43 OK 2473 2476 2477 2497 C3' G B 44 OK 2495 2498 2499 2520 C3' U B 45 OK 2518 2521 2522 2540 C3' G B 46 OK 2538 2541 2542 2563 C3' U B 47 OK 2561 2564 2565 2583 C3' C B 48 OK 2581 2584 2585 2603 C3' G B 49 OK 2601 2604 2605 2626 C3' G B 50 OK 2624 2627 2628 2649 C3' C B 51 OK 2647 2650 2651 2669 C3' G B 52 OK 2667 2670 2671 2692 C3' G B 53 OK 2690 2693 2694 2715 C3' U B 54 OK 2713 2716 2717 2735 C3' U B 55 OK 2733 2736 2737 2755 C3' C B 56 OK 2753 2756 2757 2775 C3' G B 57 OK 2773 2776 2777 2798 C3' A B 58 OK 2796 2799 2800 2820 C3' U B 59 OK 2818 2821 2822 2840 C3' U B 60 OK 2838 2841 2842 2860 C3' C B 61 OK 2858 2861 2862 2880 C3' C B 62 OK 2878 2881 2882 2900 C3' G B 63 OK 2898 2901 2902 2923 C3' C B 64 OK 2921 2924 2925 2943 C3' C B 65 OK 2941 2944 2945 2963 C3' C B 66 OK 2961 2964 2965 2983 C3' C B 67 OK 2981 2984 2985 3003 C3' U B 68 OK 3001 3004 3005 3023 C3' C B 69 OK 3021 3024 3025 3043 C3' G B 70 OK 3041 3044 3045 3066 C3' G B 71 OK 3064 3067 3068 3089 C3' C B 72 OK 3087 3090 3091 3109 C3' A B 73 OK 3107 3110 3111 8168 C3' FMN C 400 OK 8170 8169 8166 8199 C3' FMN D 400 OK 8201 8200 8197 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 7 C4' G A 1 OK 9 6 8 30 C4' C A 2 OK 32 29 31 50 C4' C A 3 OK 52 49 51 70 C4' G A 4 OK 72 69 71 93 C4' A A 5 OK 95 92 94 115 C4' G A 6 OK 117 114 116 138 C4' G A 7 OK 140 137 139 161 C4' U A 8 OK 163 160 162 181 C4' A A 9 OK 183 180 182 203 C4' G A 10 OK 205 202 204 226 C4' C A 11 OK 228 225 227 246 C4' U A 12 OK 248 245 247 266 C4' C A 13 OK 268 265 267 286 C4' A A 14 OK 288 285 287 308 C4' G A 15 OK 310 307 309 331 C4' U A 16 OK 333 330 332 351 C4' U A 17 OK 353 350 352 371 C4' G A 18 OK 373 370 372 394 C4' G A 19 OK 396 393 395 417 C4' H2U A 20 OK 419 416 418 437 C4' A A 21 OK 439 436 438 459 C4' G A 22 OK 461 458 460 482 C4' A A 23 OK 484 481 483 504 C4' G A 24 OK 506 503 505 527 C4' C A 25 OK 529 526 528 547 C4' A A 26 OK 549 546 548 569 C4' U A 27 OK 571 568 570 589 C4' G A 28 OK 591 588 590 612 C4' C A 29 OK 614 611 613 632 C4' G A 30 OK 634 631 633 655 C4' A A 31 OK 657 654 656 677 C4' C A 32 OK 679 676 678 697 C4' U A 33 OK 699 696 698 717 C4' G A 34 OK 719 716 718 740 C4' A A 35 OK 742 739 741 762 C4' A A 36 OK 764 761 763 784 C4' A A 37 OK 786 783 785 806 C4' A A 38 OK 808 805 807 828 C4' U A 39 OK 830 827 829 848 C4' C A 40 OK 850 847 849 868 C4' G A 41 OK 870 867 869 891 C4' C A 42 OK 893 890 892 911 C4' A A 43 OK 913 910 912 933 C4' G A 44 OK 935 932 934 956 C4' U A 45 OK 958 955 957 976 C4' G A 46 OK 978 975 977 999 C4' U A 47 OK 1001 998 1000 1019 C4' C A 48 OK 1021 1018 1020 1039 C4' G A 49 OK 1041 1038 1040 1062 C4' G A 50 OK 1064 1061 1063 1085 C4' C A 51 OK 1087 1084 1086 1105 C4' G A 52 OK 1107 1104 1106 1128 C4' G A 53 OK 1130 1127 1129 1151 C4' U A 54 OK 1153 1150 1152 1171 C4' U A 55 OK 1173 1170 1172 1191 C4' C A 56 OK 1193 1190 1192 1211 C4' G A 57 OK 1213 1210 1212 1234 C4' A A 58 OK 1236 1233 1235 1256 C4' U A 59 OK 1258 1255 1257 1276 C4' U A 60 OK 1278 1275 1277 1296 C4' C A 61 OK 1298 1295 1297 1316 C4' C A 62 OK 1318 1315 1317 1336 C4' G A 63 OK 1338 1335 1337 1359 C4' C A 64 OK 1361 1358 1360 1379 C4' C A 65 OK 1381 1378 1380 1399 C4' C A 66 OK 1401 1398 1400 1419 C4' C A 67 OK 1421 1418 1420 1439 C4' U A 68 OK 1441 1438 1440 1459 C4' C A 69 OK 1461 1458 1460 1479 C4' G A 70 OK 1481 1478 1480 1502 C4' G A 71 OK 1504 1501 1503 1525 C4' C A 72 OK 1527 1524 1526 1545 C4' A A 73 OK 1547 1544 1546 1569 C4' G B 1 OK 1571 1568 1570 1592 C4' C B 2 OK 1594 1591 1593 1612 C4' C B 3 OK 1614 1611 1613 1632 C4' G B 4 OK 1634 1631 1633 1655 C4' A B 5 OK 1657 1654 1656 1677 C4' G B 6 OK 1679 1676 1678 1700 C4' G B 7 OK 1702 1699 1701 1723 C4' U B 8 OK 1725 1722 1724 1743 C4' A B 9 OK 1745 1742 1744 1765 C4' G B 10 OK 1767 1764 1766 1788 C4' C B 11 OK 1790 1787 1789 1808 C4' U B 12 OK 1810 1807 1809 1828 C4' C B 13 OK 1830 1827 1829 1848 C4' A B 14 OK 1850 1847 1849 1870 C4' G B 15 OK 1872 1869 1871 1893 C4' U B 16 OK 1895 1892 1894 1913 C4' U B 17 OK 1915 1912 1914 1933 C4' G B 18 OK 1935 1932 1934 1956 C4' G B 19 OK 1958 1955 1957 1979 C4' H2U B 20 OK 1981 1978 1980 1999 C4' A B 21 OK 2001 1998 2000 2021 C4' G B 22 OK 2023 2020 2022 2044 C4' A B 23 OK 2046 2043 2045 2066 C4' G B 24 OK 2068 2065 2067 2089 C4' C B 25 OK 2091 2088 2090 2109 C4' A B 26 OK 2111 2108 2110 2131 C4' U B 27 OK 2133 2130 2132 2151 C4' G B 28 OK 2153 2150 2152 2174 C4' C B 29 OK 2176 2173 2175 2194 C4' G B 30 OK 2196 2193 2195 2217 C4' A B 31 OK 2219 2216 2218 2239 C4' C B 32 OK 2241 2238 2240 2259 C4' U B 33 OK 2261 2258 2260 2279 C4' G B 34 OK 2281 2278 2280 2302 C4' A B 35 OK 2304 2301 2303 2324 C4' A B 36 OK 2326 2323 2325 2346 C4' A B 37 OK 2348 2345 2347 2368 C4' A B 38 OK 2370 2367 2369 2390 C4' U B 39 OK 2392 2389 2391 2410 C4' C B 40 OK 2412 2409 2411 2430 C4' G B 41 OK 2432 2429 2431 2453 C4' C B 42 OK 2455 2452 2454 2473 C4' A B 43 OK 2475 2472 2474 2495 C4' G B 44 OK 2497 2494 2496 2518 C4' U B 45 OK 2520 2517 2519 2538 C4' G B 46 OK 2540 2537 2539 2561 C4' U B 47 OK 2563 2560 2562 2581 C4' C B 48 OK 2583 2580 2582 2601 C4' G B 49 OK 2603 2600 2602 2624 C4' G B 50 OK 2626 2623 2625 2647 C4' C B 51 OK 2649 2646 2648 2667 C4' G B 52 OK 2669 2666 2668 2690 C4' G B 53 OK 2692 2689 2691 2713 C4' U B 54 OK 2715 2712 2714 2733 C4' U B 55 OK 2735 2732 2734 2753 C4' C B 56 OK 2755 2752 2754 2773 C4' G B 57 OK 2775 2772 2774 2796 C4' A B 58 OK 2798 2795 2797 2818 C4' U B 59 OK 2820 2817 2819 2838 C4' U B 60 OK 2840 2837 2839 2858 C4' C B 61 OK 2860 2857 2859 2878 C4' C B 62 OK 2880 2877 2879 2898 C4' G B 63 OK 2900 2897 2899 2921 C4' C B 64 OK 2923 2920 2922 2941 C4' C B 65 OK 2943 2940 2942 2961 C4' C B 66 OK 2963 2960 2962 2981 C4' C B 67 OK 2983 2980 2982 3001 C4' U B 68 OK 3003 3000 3002 3021 C4' C B 69 OK 3023 3020 3022 3041 C4' G B 70 OK 3043 3040 3042 3064 C4' G B 71 OK 3066 3063 3065 3087 C4' C B 72 OK 3089 3086 3088 3107 C4' A B 73 OK 3109 3106 3108 8170 C4' FMN C 400 OK 8168 8172 8171 8201 C4' FMN D 400 OK 8199 8203 8202 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 6 C5' G A 1 5 7 29 C5' C A 2 28 30 49 C5' C A 3 48 50 69 C5' G A 4 68 70 92 C5' A A 5 91 93 114 C5' G A 6 113 115 137 C5' G A 7 136 138 160 C5' U A 8 159 161 180 C5' A A 9 179 181 202 C5' G A 10 201 203 225 C5' C A 11 224 226 245 C5' U A 12 244 246 265 C5' C A 13 264 266 285 C5' A A 14 284 286 307 C5' G A 15 306 308 330 C5' U A 16 329 331 350 C5' U A 17 349 351 370 C5' G A 18 369 371 393 C5' G A 19 392 394 416 C5' H2U A 20 415 417 436 C5' A A 21 435 437 458 C5' G A 22 457 459 481 C5' A A 23 480 482 503 C5' G A 24 502 504 526 C5' C A 25 525 527 546 C5' A A 26 545 547 568 C5' U A 27 567 569 588 C5' G A 28 587 589 611 C5' C A 29 610 612 631 C5' G A 30 630 632 654 C5' A A 31 653 655 676 C5' C A 32 675 677 696 C5' U A 33 695 697 716 C5' G A 34 715 717 739 C5' A A 35 738 740 761 C5' A A 36 760 762 783 C5' A A 37 782 784 805 C5' A A 38 804 806 827 C5' U A 39 826 828 847 C5' C A 40 846 848 867 C5' G A 41 866 868 890 C5' C A 42 889 891 910 C5' A A 43 909 911 932 C5' G A 44 931 933 955 C5' U A 45 954 956 975 C5' G A 46 974 976 998 C5' U A 47 997 999 1018 C5' C A 48 1017 1019 1038 C5' G A 49 1037 1039 1061 C5' G A 50 1060 1062 1084 C5' C A 51 1083 1085 1104 C5' G A 52 1103 1105 1127 C5' G A 53 1126 1128 1150 C5' U A 54 1149 1151 1170 C5' U A 55 1169 1171 1190 C5' C A 56 1189 1191 1210 C5' G A 57 1209 1211 1233 C5' A A 58 1232 1234 1255 C5' U A 59 1254 1256 1275 C5' U A 60 1274 1276 1295 C5' C A 61 1294 1296 1315 C5' C A 62 1314 1316 1335 C5' G A 63 1334 1336 1358 C5' C A 64 1357 1359 1378 C5' C A 65 1377 1379 1398 C5' C A 66 1397 1399 1418 C5' C A 67 1417 1419 1438 C5' U A 68 1437 1439 1458 C5' C A 69 1457 1459 1478 C5' G A 70 1477 1479 1501 C5' G A 71 1500 1502 1524 C5' C A 72 1523 1525 1544 C5' A A 73 1543 1545 1568 C5' G B 1 1567 1569 1591 C5' C B 2 1590 1592 1611 C5' C B 3 1610 1612 1631 C5' G B 4 1630 1632 1654 C5' A B 5 1653 1655 1676 C5' G B 6 1675 1677 1699 C5' G B 7 1698 1700 1722 C5' U B 8 1721 1723 1742 C5' A B 9 1741 1743 1764 C5' G B 10 1763 1765 1787 C5' C B 11 1786 1788 1807 C5' U B 12 1806 1808 1827 C5' C B 13 1826 1828 1847 C5' A B 14 1846 1848 1869 C5' G B 15 1868 1870 1892 C5' U B 16 1891 1893 1912 C5' U B 17 1911 1913 1932 C5' G B 18 1931 1933 1955 C5' G B 19 1954 1956 1978 C5' H2U B 20 1977 1979 1998 C5' A B 21 1997 1999 2020 C5' G B 22 2019 2021 2043 C5' A B 23 2042 2044 2065 C5' G B 24 2064 2066 2088 C5' C B 25 2087 2089 2108 C5' A B 26 2107 2109 2130 C5' U B 27 2129 2131 2150 C5' G B 28 2149 2151 2173 C5' C B 29 2172 2174 2193 C5' G B 30 2192 2194 2216 C5' A B 31 2215 2217 2238 C5' C B 32 2237 2239 2258 C5' U B 33 2257 2259 2278 C5' G B 34 2277 2279 2301 C5' A B 35 2300 2302 2323 C5' A B 36 2322 2324 2345 C5' A B 37 2344 2346 2367 C5' A B 38 2366 2368 2389 C5' U B 39 2388 2390 2409 C5' C B 40 2408 2410 2429 C5' G B 41 2428 2430 2452 C5' C B 42 2451 2453 2472 C5' A B 43 2471 2473 2494 C5' G B 44 2493 2495 2517 C5' U B 45 2516 2518 2537 C5' G B 46 2536 2538 2560 C5' U B 47 2559 2561 2580 C5' C B 48 2579 2581 2600 C5' G B 49 2599 2601 2623 C5' G B 50 2622 2624 2646 C5' C B 51 2645 2647 2666 C5' G B 52 2665 2667 2689 C5' G B 53 2688 2690 2712 C5' U B 54 2711 2713 2732 C5' U B 55 2731 2733 2752 C5' C B 56 2751 2753 2772 C5' G B 57 2771 2773 2795 C5' A B 58 2794 2796 2817 C5' U B 59 2816 2818 2837 C5' U B 60 2836 2838 2857 C5' C B 61 2856 2858 2877 C5' C B 62 2876 2878 2897 C5' G B 63 2896 2898 2920 C5' C B 64 2919 2921 2940 C5' C B 65 2939 2941 2960 C5' C B 66 2959 2961 2980 C5' C B 67 2979 2981 3000 C5' U B 68 2999 3001 3020 C5' C B 69 3019 3021 3040 C5' G B 70 3039 3041 3063 C5' G B 71 3062 3064 3086 C5' C B 72 3085 3087 3106 C5' A B 73 3105 3107 8172 C5' FMN C 400 8173 8170 8203 C5' FMN D 400 8204 8201 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 2 P G A 1 OK OK 3 4 5 25 P C A 2 distorted distorted 10 26 27 28 45 P C A 3 distorted distorted 33 46 47 48 65 P G A 4 distorted distorted 53 66 67 68 88 P A A 5 distorted distorted 73 89 90 91 110 P G A 6 distorted distorted 96 111 112 113 133 P G A 7 distorted distorted 118 134 135 136 156 P U A 8 distorted distorted 141 157 158 159 176 P A A 9 distorted distorted 164 177 178 179 198 P G A 10 distorted distorted 184 199 200 201 221 P C A 11 distorted distorted 206 222 223 224 241 P U A 12 distorted distorted 229 242 243 244 261 P C A 13 distorted distorted 249 262 263 264 281 P A A 14 distorted distorted 269 282 283 284 303 P G A 15 distorted distorted 289 304 305 306 326 P U A 16 distorted distorted 311 327 328 329 346 P U A 17 distorted distorted 334 347 348 349 366 P G A 18 distorted distorted 354 367 368 369 389 P G A 19 distorted distorted 374 390 391 392 412 P H2U A 20 OK OK 397 413 414 415 432 P A A 21 distorted distorted 420 433 434 435 454 P G A 22 distorted distorted 440 455 456 457 477 P A A 23 distorted distorted 462 478 479 480 499 P G A 24 distorted distorted 485 500 501 502 522 P C A 25 distorted distorted 507 523 524 525 542 P A A 26 distorted distorted 530 543 544 545 564 P U A 27 distorted distorted 550 565 566 567 584 P G A 28 distorted distorted 572 585 586 587 607 P C A 29 distorted distorted 592 608 609 610 627 P G A 30 distorted distorted 615 628 629 630 650 P A A 31 distorted distorted 635 651 652 653 672 P C A 32 distorted distorted 658 673 674 675 692 P U A 33 distorted distorted 680 693 694 695 712 P G A 34 distorted distorted 700 713 714 715 735 P A A 35 distorted distorted 720 736 737 738 757 P A A 36 distorted distorted 743 758 759 760 779 P A A 37 distorted distorted 765 780 781 782 801 P A A 38 distorted distorted 787 802 803 804 823 P U A 39 distorted distorted 809 824 825 826 843 P C A 40 distorted distorted 831 844 845 846 863 P G A 41 distorted distorted 851 864 865 866 886 P C A 42 distorted distorted 871 887 888 889 906 P A A 43 distorted distorted 894 907 908 909 928 P G A 44 distorted distorted 914 929 930 931 951 P U A 45 distorted distorted 936 952 953 954 971 P G A 46 distorted distorted 959 972 973 974 994 P U A 47 distorted distorted 979 995 996 997 1014 P C A 48 distorted distorted 1002 1015 1016 1017 1034 P G A 49 distorted distorted 1022 1035 1036 1037 1057 P G A 50 distorted distorted 1042 1058 1059 1060 1080 P C A 51 distorted distorted 1065 1081 1082 1083 1100 P G A 52 distorted distorted 1088 1101 1102 1103 1123 P G A 53 distorted distorted 1108 1124 1125 1126 1146 P U A 54 distorted distorted 1131 1147 1148 1149 1166 P U A 55 distorted distorted 1154 1167 1168 1169 1186 P C A 56 distorted distorted 1174 1187 1188 1189 1206 P G A 57 distorted distorted 1194 1207 1208 1209 1229 P A A 58 distorted distorted 1214 1230 1231 1232 1251 P U A 59 distorted distorted 1237 1252 1253 1254 1271 P U A 60 distorted distorted 1259 1272 1273 1274 1291 P C A 61 distorted distorted 1279 1292 1293 1294 1311 P C A 62 distorted distorted 1299 1312 1313 1314 1331 P G A 63 distorted distorted 1319 1332 1333 1334 1354 P C A 64 distorted distorted 1339 1355 1356 1357 1374 P C A 65 distorted distorted 1362 1375 1376 1377 1394 P C A 66 distorted distorted 1382 1395 1396 1397 1414 P C A 67 distorted distorted 1402 1415 1416 1417 1434 P U A 68 distorted distorted 1422 1435 1436 1437 1454 P C A 69 distorted distorted 1442 1455 1456 1457 1474 P G A 70 distorted distorted 1462 1475 1476 1477 1497 P G A 71 distorted distorted 1482 1498 1499 1500 1520 P C A 72 distorted distorted 1505 1521 1522 1523 1540 P A A 73 distorted distorted 1528 1541 1542 1543 1564 P G B 1 OK OK 1565 1566 1567 1587 P C B 2 distorted distorted 1572 1588 1589 1590 1607 P C B 3 distorted distorted 1595 1608 1609 1610 1627 P G B 4 distorted distorted 1615 1628 1629 1630 1650 P A B 5 distorted distorted 1635 1651 1652 1653 1672 P G B 6 distorted distorted 1658 1673 1674 1675 1695 P G B 7 distorted distorted 1680 1696 1697 1698 1718 P U B 8 distorted distorted 1703 1719 1720 1721 1738 P A B 9 distorted distorted 1726 1739 1740 1741 1760 P G B 10 distorted distorted 1746 1761 1762 1763 1783 P C B 11 distorted distorted 1768 1784 1785 1786 1803 P U B 12 distorted distorted 1791 1804 1805 1806 1823 P C B 13 distorted distorted 1811 1824 1825 1826 1843 P A B 14 distorted distorted 1831 1844 1845 1846 1865 P G B 15 distorted distorted 1851 1866 1867 1868 1888 P U B 16 distorted distorted 1873 1889 1890 1891 1908 P U B 17 distorted distorted 1896 1909 1910 1911 1928 P G B 18 distorted distorted 1916 1929 1930 1931 1951 P G B 19 distorted distorted 1936 1952 1953 1954 1974 P H2U B 20 OK OK 1959 1975 1976 1977 1994 P A B 21 distorted distorted 1982 1995 1996 1997 2016 P G B 22 distorted distorted 2002 2017 2018 2019 2039 P A B 23 distorted distorted 2024 2040 2041 2042 2061 P G B 24 distorted distorted 2047 2062 2063 2064 2084 P C B 25 distorted distorted 2069 2085 2086 2087 2104 P A B 26 distorted distorted 2092 2105 2106 2107 2126 P U B 27 distorted distorted 2112 2127 2128 2129 2146 P G B 28 distorted distorted 2134 2147 2148 2149 2169 P C B 29 distorted distorted 2154 2170 2171 2172 2189 P G B 30 distorted distorted 2177 2190 2191 2192 2212 P A B 31 distorted distorted 2197 2213 2214 2215 2234 P C B 32 distorted distorted 2220 2235 2236 2237 2254 P U B 33 distorted distorted 2242 2255 2256 2257 2274 P G B 34 distorted distorted 2262 2275 2276 2277 2297 P A B 35 distorted distorted 2282 2298 2299 2300 2319 P A B 36 distorted distorted 2305 2320 2321 2322 2341 P A B 37 distorted distorted 2327 2342 2343 2344 2363 P A B 38 distorted distorted 2349 2364 2365 2366 2385 P U B 39 distorted distorted 2371 2386 2387 2388 2405 P C B 40 distorted distorted 2393 2406 2407 2408 2425 P G B 41 distorted distorted 2413 2426 2427 2428 2448 P C B 42 distorted distorted 2433 2449 2450 2451 2468 P A B 43 distorted distorted 2456 2469 2470 2471 2490 P G B 44 distorted distorted 2476 2491 2492 2493 2513 P U B 45 distorted distorted 2498 2514 2515 2516 2533 P G B 46 distorted distorted 2521 2534 2535 2536 2556 P U B 47 distorted distorted 2541 2557 2558 2559 2576 P C B 48 distorted distorted 2564 2577 2578 2579 2596 P G B 49 distorted distorted 2584 2597 2598 2599 2619 P G B 50 distorted distorted 2604 2620 2621 2622 2642 P C B 51 distorted distorted 2627 2643 2644 2645 2662 P G B 52 distorted distorted 2650 2663 2664 2665 2685 P G B 53 distorted distorted 2670 2686 2687 2688 2708 P U B 54 distorted distorted 2693 2709 2710 2711 2728 P U B 55 distorted distorted 2716 2729 2730 2731 2748 P C B 56 distorted distorted 2736 2749 2750 2751 2768 P G B 57 distorted distorted 2756 2769 2770 2771 2791 P A B 58 distorted distorted 2776 2792 2793 2794 2813 P U B 59 distorted distorted 2799 2814 2815 2816 2833 P U B 60 distorted distorted 2821 2834 2835 2836 2853 P C B 61 distorted distorted 2841 2854 2855 2856 2873 P C B 62 distorted distorted 2861 2874 2875 2876 2893 P G B 63 distorted distorted 2881 2894 2895 2896 2916 P C B 64 distorted distorted 2901 2917 2918 2919 2936 P C B 65 distorted distorted 2924 2937 2938 2939 2956 P C B 66 distorted distorted 2944 2957 2958 2959 2976 P C B 67 distorted distorted 2964 2977 2978 2979 2996 P U B 68 distorted distorted 2984 2997 2998 2999 3016 P C B 69 distorted distorted 3004 3017 3018 3019 3036 P G B 70 distorted distorted 3024 3037 3038 3039 3059 P G B 71 distorted distorted 3044 3060 3061 3062 3082 P C B 72 distorted distorted 3067 3083 3084 3085 3102 P A B 73 distorted distorted 3090 3103 3104 3105 8174 P FMN C 400 OK OK 8175 8176 8173 8205 P FMN D 400 OK OK 8206 8207 8204 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