ID code: '2ZXU' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 4811 C1' G C 1 beta 4806 4812 4809 4834 C1' C C 2 beta 4829 4835 4832 4854 C1' C C 3 beta 4849 4855 4852 4874 C1' C C 4 beta 4869 4875 4872 4894 C1' G C 5 beta 4889 4895 4892 4917 C1' G C 6 beta 4912 4918 4915 4940 C1' A C 7 beta 4935 4941 4938 4962 C1' U C 8 beta 4957 4963 4960 4982 C1' A C 9 beta 4977 4983 4980 5004 C1' G C 10 beta 4999 5005 5002 5027 C1' C C 11 beta 5022 5028 5025 5047 C1' U C 12 beta 5042 5048 5045 5067 C1' C C 13 beta 5062 5068 5065 5087 C1' A C 14 beta 5082 5088 5085 5109 C1' G C 15 beta 5104 5110 5107 5132 C1' U C 16 beta 5127 5133 5130 5152 C1' C C 17 beta 5147 5153 5150 5172 C1' G C 18 beta 5167 5173 5170 5195 C1' G C 19 beta 5190 5196 5193 5218 C1' U C 20 beta 5213 5219 5216 5238 C1' A C 21 beta 5233 5239 5236 5260 C1' G C 22 beta 5255 5261 5258 5283 C1' A C 23 beta 5278 5284 5281 5305 C1' G C 24 beta 5300 5306 5303 5328 C1' C C 25 beta 5323 5329 5326 5348 C1' A C 26 beta 5343 5349 5346 5370 C1' G C 27 beta 5365 5371 5368 5393 C1' G C 28 beta 5388 5394 5391 5416 C1' G C 29 beta 5411 5417 5414 5439 C1' G C 30 beta 5434 5440 5437 5462 C1' A C 31 beta 5457 5463 5460 5484 C1' U C 32 beta 5479 5485 5482 5504 C1' U C 33 beta 5499 5505 5502 5524 C1' G C 34 beta 5519 5525 5522 5547 C1' A C 35 beta 5542 5548 5545 5569 C1' A C 36 beta 5564 5570 5567 5591 C1' A C 37 beta 5586 5592 5589 5613 C1' A C 38 beta 5608 5614 5611 5635 C1' U C 39 beta 5630 5636 5633 5655 C1' C C 40 beta 5650 5656 5653 5675 C1' C C 41 beta 5670 5676 5673 5695 C1' C C 42 beta 5690 5696 5693 5715 C1' C C 43 beta 5710 5716 5713 5735 C1' G C 44 beta 5730 5736 5733 5758 C1' U C 45 beta 5753 5759 5756 5778 C1' G C 46 beta 5773 5779 5776 5801 C1' U C 47 beta 5796 5802 5799 5821 C1' C C 48 beta 5816 5822 5819 5841 C1' C C 49 beta 5836 5842 5839 5861 C1' U C 50 beta 5856 5862 5859 5881 C1' U C 51 beta 5876 5882 5879 5901 C1' G C 52 beta 5896 5902 5899 5924 C1' G C 53 beta 5919 5925 5922 5947 C1' U C 54 beta 5942 5948 5945 5967 C1' U C 55 beta 5962 5968 5965 5987 C1' C C 56 beta 5982 5988 5985 6007 C1' G C 57 beta 6002 6008 6005 6030 C1' A C 58 beta 6025 6031 6028 6052 C1' U C 59 beta 6047 6053 6050 6072 C1' U C 60 beta 6067 6073 6070 6092 C1' C C 61 beta 6087 6093 6090 6112 C1' C C 62 beta 6107 6113 6110 6132 C1' G C 63 beta 6127 6133 6130 6155 C1' A C 64 beta 6150 6156 6153 6177 C1' G C 65 beta 6172 6178 6175 6200 C1' U C 66 beta 6195 6201 6198 6220 C1' C C 67 beta 6215 6221 6218 6240 C1' C C 68 beta 6235 6241 6238 6260 C1' G C 69 beta 6255 6261 6258 6283 C1' G C 70 beta 6278 6284 6281 6306 C1' G C 71 beta 6301 6307 6304 6329 C1' C C 72 beta 6324 6330 6327 6349 C1' A C 73 beta 6344 6350 6347 6371 C1' C C 74 beta 6366 6372 6369 6389 C1' G D 1 beta 6384 6390 6387 6412 C1' C D 2 beta 6407 6413 6410 6432 C1' C D 3 beta 6427 6433 6430 6452 C1' C D 4 beta 6447 6453 6450 6472 C1' G D 5 beta 6467 6473 6470 6495 C1' G D 6 beta 6490 6496 6493 6518 C1' A D 7 beta 6513 6519 6516 6540 C1' U D 8 beta 6535 6541 6538 6560 C1' A D 9 beta 6555 6561 6558 6582 C1' G D 10 beta 6577 6583 6580 6605 C1' C D 11 beta 6600 6606 6603 6625 C1' U D 12 beta 6620 6626 6623 6645 C1' C D 13 beta 6640 6646 6643 6665 C1' A D 14 beta 6660 6666 6663 6687 C1' G D 15 beta 6682 6688 6685 6710 C1' U D 16 beta 6705 6711 6708 6730 C1' C D 17 beta 6725 6731 6728 6750 C1' G D 18 beta 6745 6751 6748 6773 C1' G D 19 beta 6768 6774 6771 6796 C1' U D 20 beta 6791 6797 6794 6816 C1' A D 21 beta 6811 6817 6814 6838 C1' G D 22 beta 6833 6839 6836 6861 C1' A D 23 beta 6856 6862 6859 6883 C1' G D 24 beta 6878 6884 6881 6906 C1' C D 25 beta 6901 6907 6904 6926 C1' A D 26 beta 6921 6927 6924 6948 C1' G D 27 beta 6943 6949 6946 6971 C1' G D 28 beta 6966 6972 6969 6994 C1' G D 29 beta 6989 6995 6992 7017 C1' G D 30 beta 7012 7018 7015 7040 C1' A D 31 beta 7035 7041 7038 7062 C1' U D 32 beta 7057 7063 7060 7082 C1' U D 33 beta 7077 7083 7080 7102 C1' G D 34 beta 7097 7103 7100 7125 C1' A D 35 beta 7120 7126 7123 7147 C1' A D 36 beta 7142 7148 7145 7169 C1' A D 37 beta 7164 7170 7167 7191 C1' A D 38 beta 7186 7192 7189 7213 C1' U D 39 beta 7208 7214 7211 7233 C1' C D 40 beta 7228 7234 7231 7253 C1' C D 41 beta 7248 7254 7251 7273 C1' C D 42 beta 7268 7274 7271 7293 C1' C D 43 beta 7288 7294 7291 7313 C1' G D 44 beta 7308 7314 7311 7336 C1' U D 45 beta 7331 7337 7334 7356 C1' G D 46 beta 7351 7357 7354 7379 C1' U D 47 beta 7374 7380 7377 7399 C1' C D 48 beta 7394 7400 7397 7419 C1' C D 49 beta 7414 7420 7417 7439 C1' U D 50 beta 7434 7440 7437 7459 C1' U D 51 beta 7454 7460 7457 7479 C1' G D 52 beta 7474 7480 7477 7502 C1' G D 53 beta 7497 7503 7500 7525 C1' U D 54 beta 7520 7526 7523 7545 C1' U D 55 beta 7540 7546 7543 7565 C1' C D 56 beta 7560 7566 7563 7585 C1' G D 57 beta 7580 7586 7583 7608 C1' A D 58 beta 7603 7609 7606 7630 C1' U D 59 beta 7625 7631 7628 7650 C1' U D 60 beta 7645 7651 7648 7670 C1' C D 61 beta 7665 7671 7668 7690 C1' C D 62 beta 7685 7691 7688 7710 C1' G D 63 beta 7705 7711 7708 7733 C1' A D 64 beta 7728 7734 7731 7755 C1' G D 65 beta 7750 7756 7753 7778 C1' U D 66 beta 7773 7779 7776 7798 C1' C D 67 beta 7793 7799 7796 7818 C1' C D 68 beta 7813 7819 7816 7838 C1' G D 69 beta 7833 7839 7836 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 4809 C2' G C 1 OK 4811 4807 4810 4832 C2' C C 2 OK 4834 4830 4833 4852 C2' C C 3 OK 4854 4850 4853 4872 C2' C C 4 OK 4874 4870 4873 4892 C2' G C 5 OK 4894 4890 4893 4915 C2' G C 6 OK 4917 4913 4916 4938 C2' A C 7 OK 4940 4936 4939 4960 C2' U C 8 OK 4962 4958 4961 4980 C2' A C 9 OK 4982 4978 4981 5002 C2' G C 10 OK 5004 5000 5003 5025 C2' C C 11 OK 5027 5023 5026 5045 C2' U C 12 OK 5047 5043 5046 5065 C2' C C 13 OK 5067 5063 5066 5085 C2' A C 14 OK 5087 5083 5086 5107 C2' G C 15 OK 5109 5105 5108 5130 C2' U C 16 OK 5132 5128 5131 5150 C2' C C 17 OK 5152 5148 5151 5170 C2' G C 18 OK 5172 5168 5171 5193 C2' G C 19 OK 5195 5191 5194 5216 C2' U C 20 OK 5218 5214 5217 5236 C2' A C 21 OK 5238 5234 5237 5258 C2' G C 22 OK 5260 5256 5259 5281 C2' A C 23 OK 5283 5279 5282 5303 C2' G C 24 OK 5305 5301 5304 5326 C2' C C 25 OK 5328 5324 5327 5346 C2' A C 26 OK 5348 5344 5347 5368 C2' G C 27 OK 5370 5366 5369 5391 C2' G C 28 OK 5393 5389 5392 5414 C2' G C 29 OK 5416 5412 5415 5437 C2' G C 30 OK 5439 5435 5438 5460 C2' A C 31 OK 5462 5458 5461 5482 C2' U C 32 OK 5484 5480 5483 5502 C2' U C 33 OK 5504 5500 5503 5522 C2' G C 34 OK 5524 5520 5523 5545 C2' A C 35 OK 5547 5543 5546 5567 C2' A C 36 OK 5569 5565 5568 5589 C2' A C 37 OK 5591 5587 5590 5611 C2' A C 38 OK 5613 5609 5612 5633 C2' U C 39 OK 5635 5631 5634 5653 C2' C C 40 OK 5655 5651 5654 5673 C2' C C 41 OK 5675 5671 5674 5693 C2' C C 42 OK 5695 5691 5694 5713 C2' C C 43 OK 5715 5711 5714 5733 C2' G C 44 OK 5735 5731 5734 5756 C2' U C 45 OK 5758 5754 5757 5776 C2' G C 46 OK 5778 5774 5777 5799 C2' U C 47 OK 5801 5797 5800 5819 C2' C C 48 OK 5821 5817 5820 5839 C2' C C 49 OK 5841 5837 5840 5859 C2' U C 50 OK 5861 5857 5860 5879 C2' U C 51 OK 5881 5877 5880 5899 C2' G C 52 OK 5901 5897 5900 5922 C2' G C 53 OK 5924 5920 5923 5945 C2' U C 54 OK 5947 5943 5946 5965 C2' U C 55 OK 5967 5963 5966 5985 C2' C C 56 OK 5987 5983 5986 6005 C2' G C 57 OK 6007 6003 6006 6028 C2' A C 58 OK 6030 6026 6029 6050 C2' U C 59 OK 6052 6048 6051 6070 C2' U C 60 OK 6072 6068 6071 6090 C2' C C 61 OK 6092 6088 6091 6110 C2' C C 62 OK 6112 6108 6111 6130 C2' G C 63 OK 6132 6128 6131 6153 C2' A C 64 OK 6155 6151 6154 6175 C2' G C 65 OK 6177 6173 6176 6198 C2' U C 66 OK 6200 6196 6199 6218 C2' C C 67 OK 6220 6216 6219 6238 C2' C C 68 OK 6240 6236 6239 6258 C2' G C 69 OK 6260 6256 6259 6281 C2' G C 70 OK 6283 6279 6282 6304 C2' G C 71 OK 6306 6302 6305 6327 C2' C C 72 OK 6329 6325 6328 6347 C2' A C 73 OK 6349 6345 6348 6369 C2' C C 74 OK 6371 6367 6370 6387 C2' G D 1 OK 6389 6385 6388 6410 C2' C D 2 OK 6412 6408 6411 6430 C2' C D 3 OK 6432 6428 6431 6450 C2' C D 4 OK 6452 6448 6451 6470 C2' G D 5 OK 6472 6468 6471 6493 C2' G D 6 OK 6495 6491 6494 6516 C2' A D 7 OK 6518 6514 6517 6538 C2' U D 8 OK 6540 6536 6539 6558 C2' A D 9 OK 6560 6556 6559 6580 C2' G D 10 OK 6582 6578 6581 6603 C2' C D 11 OK 6605 6601 6604 6623 C2' U D 12 OK 6625 6621 6624 6643 C2' C D 13 OK 6645 6641 6644 6663 C2' A D 14 OK 6665 6661 6664 6685 C2' G D 15 OK 6687 6683 6686 6708 C2' U D 16 OK 6710 6706 6709 6728 C2' C D 17 OK 6730 6726 6729 6748 C2' G D 18 OK 6750 6746 6749 6771 C2' G D 19 OK 6773 6769 6772 6794 C2' U D 20 OK 6796 6792 6795 6814 C2' A D 21 OK 6816 6812 6815 6836 C2' G D 22 OK 6838 6834 6837 6859 C2' A D 23 OK 6861 6857 6860 6881 C2' G D 24 OK 6883 6879 6882 6904 C2' C D 25 OK 6906 6902 6905 6924 C2' A D 26 OK 6926 6922 6925 6946 C2' G D 27 OK 6948 6944 6947 6969 C2' G D 28 OK 6971 6967 6970 6992 C2' G D 29 OK 6994 6990 6993 7015 C2' G D 30 OK 7017 7013 7016 7038 C2' A D 31 OK 7040 7036 7039 7060 C2' U D 32 OK 7062 7058 7061 7080 C2' U D 33 OK 7082 7078 7081 7100 C2' G D 34 OK 7102 7098 7101 7123 C2' A D 35 OK 7125 7121 7124 7145 C2' A D 36 OK 7147 7143 7146 7167 C2' A D 37 OK 7169 7165 7168 7189 C2' A D 38 OK 7191 7187 7190 7211 C2' U D 39 OK 7213 7209 7212 7231 C2' C D 40 OK 7233 7229 7232 7251 C2' C D 41 OK 7253 7249 7252 7271 C2' C D 42 OK 7273 7269 7272 7291 C2' C D 43 OK 7293 7289 7292 7311 C2' G D 44 OK 7313 7309 7312 7334 C2' U D 45 OK 7336 7332 7335 7354 C2' G D 46 OK 7356 7352 7355 7377 C2' U D 47 OK 7379 7375 7378 7397 C2' C D 48 OK 7399 7395 7398 7417 C2' C D 49 OK 7419 7415 7418 7437 C2' U D 50 OK 7439 7435 7438 7457 C2' U D 51 OK 7459 7455 7458 7477 C2' G D 52 OK 7479 7475 7478 7500 C2' G D 53 OK 7502 7498 7501 7523 C2' U D 54 OK 7525 7521 7524 7543 C2' U D 55 OK 7545 7541 7544 7563 C2' C D 56 OK 7565 7561 7564 7583 C2' G D 57 OK 7585 7581 7584 7606 C2' A D 58 OK 7608 7604 7607 7628 C2' U D 59 OK 7630 7626 7629 7648 C2' U D 60 OK 7650 7646 7649 7668 C2' C D 61 OK 7670 7666 7669 7688 C2' C D 62 OK 7690 7686 7689 7708 C2' G D 63 OK 7710 7706 7709 7731 C2' A D 64 OK 7733 7729 7732 7753 C2' G D 65 OK 7755 7751 7754 7776 C2' U D 66 OK 7778 7774 7777 7796 C2' C D 67 OK 7798 7794 7797 7816 C2' C D 68 OK 7818 7814 7817 7836 C2' G D 69 OK 7838 7834 7837 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 4807 C3' G C 1 OK 4805 4808 4809 4830 C3' C C 2 OK 4828 4831 4832 4850 C3' C C 3 OK 4848 4851 4852 4870 C3' C C 4 OK 4868 4871 4872 4890 C3' G C 5 OK 4888 4891 4892 4913 C3' G C 6 OK 4911 4914 4915 4936 C3' A C 7 OK 4934 4937 4938 4958 C3' U C 8 OK 4956 4959 4960 4978 C3' A C 9 OK 4976 4979 4980 5000 C3' G C 10 OK 4998 5001 5002 5023 C3' C C 11 OK 5021 5024 5025 5043 C3' U C 12 OK 5041 5044 5045 5063 C3' C C 13 OK 5061 5064 5065 5083 C3' A C 14 OK 5081 5084 5085 5105 C3' G C 15 OK 5103 5106 5107 5128 C3' U C 16 OK 5126 5129 5130 5148 C3' C C 17 OK 5146 5149 5150 5168 C3' G C 18 OK 5166 5169 5170 5191 C3' G C 19 OK 5189 5192 5193 5214 C3' U C 20 OK 5212 5215 5216 5234 C3' A C 21 OK 5232 5235 5236 5256 C3' G C 22 OK 5254 5257 5258 5279 C3' A C 23 OK 5277 5280 5281 5301 C3' G C 24 OK 5299 5302 5303 5324 C3' C C 25 OK 5322 5325 5326 5344 C3' A C 26 OK 5342 5345 5346 5366 C3' G C 27 OK 5364 5367 5368 5389 C3' G C 28 OK 5387 5390 5391 5412 C3' G C 29 OK 5410 5413 5414 5435 C3' G C 30 OK 5433 5436 5437 5458 C3' A C 31 OK 5456 5459 5460 5480 C3' U C 32 OK 5478 5481 5482 5500 C3' U C 33 OK 5498 5501 5502 5520 C3' G C 34 OK 5518 5521 5522 5543 C3' A C 35 OK 5541 5544 5545 5565 C3' A C 36 OK 5563 5566 5567 5587 C3' A C 37 OK 5585 5588 5589 5609 C3' A C 38 OK 5607 5610 5611 5631 C3' U C 39 OK 5629 5632 5633 5651 C3' C C 40 OK 5649 5652 5653 5671 C3' C C 41 OK 5669 5672 5673 5691 C3' C C 42 OK 5689 5692 5693 5711 C3' C C 43 OK 5709 5712 5713 5731 C3' G C 44 OK 5729 5732 5733 5754 C3' U C 45 OK 5752 5755 5756 5774 C3' G C 46 OK 5772 5775 5776 5797 C3' U C 47 OK 5795 5798 5799 5817 C3' C C 48 OK 5815 5818 5819 5837 C3' C C 49 OK 5835 5838 5839 5857 C3' U C 50 OK 5855 5858 5859 5877 C3' U C 51 OK 5875 5878 5879 5897 C3' G C 52 OK 5895 5898 5899 5920 C3' G C 53 OK 5918 5921 5922 5943 C3' U C 54 OK 5941 5944 5945 5963 C3' U C 55 OK 5961 5964 5965 5983 C3' C C 56 OK 5981 5984 5985 6003 C3' G C 57 OK 6001 6004 6005 6026 C3' A C 58 OK 6024 6027 6028 6048 C3' U C 59 OK 6046 6049 6050 6068 C3' U C 60 OK 6066 6069 6070 6088 C3' C C 61 OK 6086 6089 6090 6108 C3' C C 62 OK 6106 6109 6110 6128 C3' G C 63 OK 6126 6129 6130 6151 C3' A C 64 OK 6149 6152 6153 6173 C3' G C 65 OK 6171 6174 6175 6196 C3' U C 66 OK 6194 6197 6198 6216 C3' C C 67 OK 6214 6217 6218 6236 C3' C C 68 OK 6234 6237 6238 6256 C3' G C 69 OK 6254 6257 6258 6279 C3' G C 70 OK 6277 6280 6281 6302 C3' G C 71 OK 6300 6303 6304 6325 C3' C C 72 OK 6323 6326 6327 6345 C3' A C 73 OK 6343 6346 6347 6367 C3' C C 74 OK 6365 6368 6369 6385 C3' G D 1 OK 6383 6386 6387 6408 C3' C D 2 OK 6406 6409 6410 6428 C3' C D 3 OK 6426 6429 6430 6448 C3' C D 4 OK 6446 6449 6450 6468 C3' G D 5 OK 6466 6469 6470 6491 C3' G D 6 OK 6489 6492 6493 6514 C3' A D 7 OK 6512 6515 6516 6536 C3' U D 8 OK 6534 6537 6538 6556 C3' A D 9 OK 6554 6557 6558 6578 C3' G D 10 OK 6576 6579 6580 6601 C3' C D 11 OK 6599 6602 6603 6621 C3' U D 12 OK 6619 6622 6623 6641 C3' C D 13 OK 6639 6642 6643 6661 C3' A D 14 OK 6659 6662 6663 6683 C3' G D 15 OK 6681 6684 6685 6706 C3' U D 16 OK 6704 6707 6708 6726 C3' C D 17 OK 6724 6727 6728 6746 C3' G D 18 OK 6744 6747 6748 6769 C3' G D 19 OK 6767 6770 6771 6792 C3' U D 20 OK 6790 6793 6794 6812 C3' A D 21 OK 6810 6813 6814 6834 C3' G D 22 OK 6832 6835 6836 6857 C3' A D 23 OK 6855 6858 6859 6879 C3' G D 24 OK 6877 6880 6881 6902 C3' C D 25 OK 6900 6903 6904 6922 C3' A D 26 OK 6920 6923 6924 6944 C3' G D 27 OK 6942 6945 6946 6967 C3' G D 28 OK 6965 6968 6969 6990 C3' G D 29 OK 6988 6991 6992 7013 C3' G D 30 OK 7011 7014 7015 7036 C3' A D 31 OK 7034 7037 7038 7058 C3' U D 32 OK 7056 7059 7060 7078 C3' U D 33 OK 7076 7079 7080 7098 C3' G D 34 OK 7096 7099 7100 7121 C3' A D 35 OK 7119 7122 7123 7143 C3' A D 36 OK 7141 7144 7145 7165 C3' A D 37 OK 7163 7166 7167 7187 C3' A D 38 OK 7185 7188 7189 7209 C3' U D 39 OK 7207 7210 7211 7229 C3' C D 40 OK 7227 7230 7231 7249 C3' C D 41 OK 7247 7250 7251 7269 C3' C D 42 OK 7267 7270 7271 7289 C3' C D 43 OK 7287 7290 7291 7309 C3' G D 44 OK 7307 7310 7311 7332 C3' U D 45 OK 7330 7333 7334 7352 C3' G D 46 OK 7350 7353 7354 7375 C3' U D 47 OK 7373 7376 7377 7395 C3' C D 48 OK 7393 7396 7397 7415 C3' C D 49 OK 7413 7416 7417 7435 C3' U D 50 OK 7433 7436 7437 7455 C3' U D 51 OK 7453 7456 7457 7475 C3' G D 52 OK 7473 7476 7477 7498 C3' G D 53 OK 7496 7499 7500 7521 C3' U D 54 OK 7519 7522 7523 7541 C3' U D 55 OK 7539 7542 7543 7561 C3' C D 56 OK 7559 7562 7563 7581 C3' G D 57 OK 7579 7582 7583 7604 C3' A D 58 OK 7602 7605 7606 7626 C3' U D 59 OK 7624 7627 7628 7646 C3' U D 60 OK 7644 7647 7648 7666 C3' C D 61 OK 7664 7667 7668 7686 C3' C D 62 OK 7684 7687 7688 7706 C3' G D 63 OK 7704 7707 7708 7729 C3' A D 64 OK 7727 7730 7731 7751 C3' G D 65 OK 7749 7752 7753 7774 C3' U D 66 OK 7772 7775 7776 7794 C3' C D 67 OK 7792 7795 7796 7814 C3' C D 68 OK 7812 7815 7816 7834 C3' G D 69 OK 7832 7835 7836 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 4805 C4' G C 1 OK 4807 4804 4806 4828 C4' C C 2 OK 4830 4827 4829 4848 C4' C C 3 OK 4850 4847 4849 4868 C4' C C 4 OK 4870 4867 4869 4888 C4' G C 5 OK 4890 4887 4889 4911 C4' G C 6 OK 4913 4910 4912 4934 C4' A C 7 OK 4936 4933 4935 4956 C4' U C 8 OK 4958 4955 4957 4976 C4' A C 9 OK 4978 4975 4977 4998 C4' G C 10 OK 5000 4997 4999 5021 C4' C C 11 OK 5023 5020 5022 5041 C4' U C 12 OK 5043 5040 5042 5061 C4' C C 13 OK 5063 5060 5062 5081 C4' A C 14 OK 5083 5080 5082 5103 C4' G C 15 OK 5105 5102 5104 5126 C4' U C 16 OK 5128 5125 5127 5146 C4' C C 17 OK 5148 5145 5147 5166 C4' G C 18 OK 5168 5165 5167 5189 C4' G C 19 OK 5191 5188 5190 5212 C4' U C 20 OK 5214 5211 5213 5232 C4' A C 21 OK 5234 5231 5233 5254 C4' G C 22 OK 5256 5253 5255 5277 C4' A C 23 OK 5279 5276 5278 5299 C4' G C 24 OK 5301 5298 5300 5322 C4' C C 25 OK 5324 5321 5323 5342 C4' A C 26 OK 5344 5341 5343 5364 C4' G C 27 OK 5366 5363 5365 5387 C4' G C 28 OK 5389 5386 5388 5410 C4' G C 29 OK 5412 5409 5411 5433 C4' G C 30 OK 5435 5432 5434 5456 C4' A C 31 OK 5458 5455 5457 5478 C4' U C 32 OK 5480 5477 5479 5498 C4' U C 33 OK 5500 5497 5499 5518 C4' G C 34 OK 5520 5517 5519 5541 C4' A C 35 OK 5543 5540 5542 5563 C4' A C 36 OK 5565 5562 5564 5585 C4' A C 37 OK 5587 5584 5586 5607 C4' A C 38 OK 5609 5606 5608 5629 C4' U C 39 OK 5631 5628 5630 5649 C4' C C 40 OK 5651 5648 5650 5669 C4' C C 41 OK 5671 5668 5670 5689 C4' C C 42 OK 5691 5688 5690 5709 C4' C C 43 OK 5711 5708 5710 5729 C4' G C 44 OK 5731 5728 5730 5752 C4' U C 45 OK 5754 5751 5753 5772 C4' G C 46 OK 5774 5771 5773 5795 C4' U C 47 OK 5797 5794 5796 5815 C4' C C 48 OK 5817 5814 5816 5835 C4' C C 49 OK 5837 5834 5836 5855 C4' U C 50 OK 5857 5854 5856 5875 C4' U C 51 OK 5877 5874 5876 5895 C4' G C 52 OK 5897 5894 5896 5918 C4' G C 53 OK 5920 5917 5919 5941 C4' U C 54 OK 5943 5940 5942 5961 C4' U C 55 OK 5963 5960 5962 5981 C4' C C 56 OK 5983 5980 5982 6001 C4' G C 57 OK 6003 6000 6002 6024 C4' A C 58 OK 6026 6023 6025 6046 C4' U C 59 OK 6048 6045 6047 6066 C4' U C 60 OK 6068 6065 6067 6086 C4' C C 61 OK 6088 6085 6087 6106 C4' C C 62 OK 6108 6105 6107 6126 C4' G C 63 OK 6128 6125 6127 6149 C4' A C 64 OK 6151 6148 6150 6171 C4' G C 65 OK 6173 6170 6172 6194 C4' U C 66 OK 6196 6193 6195 6214 C4' C C 67 OK 6216 6213 6215 6234 C4' C C 68 OK 6236 6233 6235 6254 C4' G C 69 OK 6256 6253 6255 6277 C4' G C 70 OK 6279 6276 6278 6300 C4' G C 71 OK 6302 6299 6301 6323 C4' C C 72 OK 6325 6322 6324 6343 C4' A C 73 OK 6345 6342 6344 6365 C4' C C 74 OK 6367 6364 6366 6383 C4' G D 1 OK 6385 6382 6384 6406 C4' C D 2 OK 6408 6405 6407 6426 C4' C D 3 OK 6428 6425 6427 6446 C4' C D 4 OK 6448 6445 6447 6466 C4' G D 5 OK 6468 6465 6467 6489 C4' G D 6 OK 6491 6488 6490 6512 C4' A D 7 OK 6514 6511 6513 6534 C4' U D 8 OK 6536 6533 6535 6554 C4' A D 9 OK 6556 6553 6555 6576 C4' G D 10 OK 6578 6575 6577 6599 C4' C D 11 OK 6601 6598 6600 6619 C4' U D 12 OK 6621 6618 6620 6639 C4' C D 13 OK 6641 6638 6640 6659 C4' A D 14 OK 6661 6658 6660 6681 C4' G D 15 OK 6683 6680 6682 6704 C4' U D 16 OK 6706 6703 6705 6724 C4' C D 17 OK 6726 6723 6725 6744 C4' G D 18 OK 6746 6743 6745 6767 C4' G D 19 OK 6769 6766 6768 6790 C4' U D 20 OK 6792 6789 6791 6810 C4' A D 21 OK 6812 6809 6811 6832 C4' G D 22 OK 6834 6831 6833 6855 C4' A D 23 OK 6857 6854 6856 6877 C4' G D 24 OK 6879 6876 6878 6900 C4' C D 25 OK 6902 6899 6901 6920 C4' A D 26 OK 6922 6919 6921 6942 C4' G D 27 OK 6944 6941 6943 6965 C4' G D 28 OK 6967 6964 6966 6988 C4' G D 29 OK 6990 6987 6989 7011 C4' G D 30 OK 7013 7010 7012 7034 C4' A D 31 OK 7036 7033 7035 7056 C4' U D 32 OK 7058 7055 7057 7076 C4' U D 33 OK 7078 7075 7077 7096 C4' G D 34 OK 7098 7095 7097 7119 C4' A D 35 OK 7121 7118 7120 7141 C4' A D 36 OK 7143 7140 7142 7163 C4' A D 37 OK 7165 7162 7164 7185 C4' A D 38 OK 7187 7184 7186 7207 C4' U D 39 OK 7209 7206 7208 7227 C4' C D 40 OK 7229 7226 7228 7247 C4' C D 41 OK 7249 7246 7248 7267 C4' C D 42 OK 7269 7266 7268 7287 C4' C D 43 OK 7289 7286 7288 7307 C4' G D 44 OK 7309 7306 7308 7330 C4' U D 45 OK 7332 7329 7331 7350 C4' G D 46 OK 7352 7349 7351 7373 C4' U D 47 OK 7375 7372 7374 7393 C4' C D 48 OK 7395 7392 7394 7413 C4' C D 49 OK 7415 7412 7414 7433 C4' U D 50 OK 7435 7432 7434 7453 C4' U D 51 OK 7455 7452 7454 7473 C4' G D 52 OK 7475 7472 7474 7496 C4' G D 53 OK 7498 7495 7497 7519 C4' U D 54 OK 7521 7518 7520 7539 C4' U D 55 OK 7541 7538 7540 7559 C4' C D 56 OK 7561 7558 7560 7579 C4' G D 57 OK 7581 7578 7580 7602 C4' A D 58 OK 7604 7601 7603 7624 C4' U D 59 OK 7626 7623 7625 7644 C4' U D 60 OK 7646 7643 7645 7664 C4' C D 61 OK 7666 7663 7665 7684 C4' C D 62 OK 7686 7683 7685 7704 C4' G D 63 OK 7706 7703 7705 7727 C4' A D 64 OK 7729 7726 7728 7749 C4' G D 65 OK 7751 7748 7750 7772 C4' U D 66 OK 7774 7771 7773 7792 C4' C D 67 OK 7794 7791 7793 7812 C4' C D 68 OK 7814 7811 7813 7832 C4' G D 69 OK 7834 7831 7833 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 4804 C5' G C 1 4803 4805 4827 C5' C C 2 4826 4828 4847 C5' C C 3 4846 4848 4867 C5' C C 4 4866 4868 4887 C5' G C 5 4886 4888 4910 C5' G C 6 4909 4911 4933 C5' A C 7 4932 4934 4955 C5' U C 8 4954 4956 4975 C5' A C 9 4974 4976 4997 C5' G C 10 4996 4998 5020 C5' C C 11 5019 5021 5040 C5' U C 12 5039 5041 5060 C5' C C 13 5059 5061 5080 C5' A C 14 5079 5081 5102 C5' G C 15 5101 5103 5125 C5' U C 16 5124 5126 5145 C5' C C 17 5144 5146 5165 C5' G C 18 5164 5166 5188 C5' G C 19 5187 5189 5211 C5' U C 20 5210 5212 5231 C5' A C 21 5230 5232 5253 C5' G C 22 5252 5254 5276 C5' A C 23 5275 5277 5298 C5' G C 24 5297 5299 5321 C5' C C 25 5320 5322 5341 C5' A C 26 5340 5342 5363 C5' G C 27 5362 5364 5386 C5' G C 28 5385 5387 5409 C5' G C 29 5408 5410 5432 C5' G C 30 5431 5433 5455 C5' A C 31 5454 5456 5477 C5' U C 32 5476 5478 5497 C5' U C 33 5496 5498 5517 C5' G C 34 5516 5518 5540 C5' A C 35 5539 5541 5562 C5' A C 36 5561 5563 5584 C5' A C 37 5583 5585 5606 C5' A C 38 5605 5607 5628 C5' U C 39 5627 5629 5648 C5' C C 40 5647 5649 5668 C5' C C 41 5667 5669 5688 C5' C C 42 5687 5689 5708 C5' C C 43 5707 5709 5728 C5' G C 44 5727 5729 5751 C5' U C 45 5750 5752 5771 C5' G C 46 5770 5772 5794 C5' U C 47 5793 5795 5814 C5' C C 48 5813 5815 5834 C5' C C 49 5833 5835 5854 C5' U C 50 5853 5855 5874 C5' U C 51 5873 5875 5894 C5' G C 52 5893 5895 5917 C5' G C 53 5916 5918 5940 C5' U C 54 5939 5941 5960 C5' U C 55 5959 5961 5980 C5' C C 56 5979 5981 6000 C5' G C 57 5999 6001 6023 C5' A C 58 6022 6024 6045 C5' U C 59 6044 6046 6065 C5' U C 60 6064 6066 6085 C5' C C 61 6084 6086 6105 C5' C C 62 6104 6106 6125 C5' G C 63 6124 6126 6148 C5' A C 64 6147 6149 6170 C5' G C 65 6169 6171 6193 C5' U C 66 6192 6194 6213 C5' C C 67 6212 6214 6233 C5' C C 68 6232 6234 6253 C5' G C 69 6252 6254 6276 C5' G C 70 6275 6277 6299 C5' G C 71 6298 6300 6322 C5' C C 72 6321 6323 6342 C5' A C 73 6341 6343 6364 C5' C C 74 6363 6365 6382 C5' G D 1 6381 6383 6405 C5' C D 2 6404 6406 6425 C5' C D 3 6424 6426 6445 C5' C D 4 6444 6446 6465 C5' G D 5 6464 6466 6488 C5' G D 6 6487 6489 6511 C5' A D 7 6510 6512 6533 C5' U D 8 6532 6534 6553 C5' A D 9 6552 6554 6575 C5' G D 10 6574 6576 6598 C5' C D 11 6597 6599 6618 C5' U D 12 6617 6619 6638 C5' C D 13 6637 6639 6658 C5' A D 14 6657 6659 6680 C5' G D 15 6679 6681 6703 C5' U D 16 6702 6704 6723 C5' C D 17 6722 6724 6743 C5' G D 18 6742 6744 6766 C5' G D 19 6765 6767 6789 C5' U D 20 6788 6790 6809 C5' A D 21 6808 6810 6831 C5' G D 22 6830 6832 6854 C5' A D 23 6853 6855 6876 C5' G D 24 6875 6877 6899 C5' C D 25 6898 6900 6919 C5' A D 26 6918 6920 6941 C5' G D 27 6940 6942 6964 C5' G D 28 6963 6965 6987 C5' G D 29 6986 6988 7010 C5' G D 30 7009 7011 7033 C5' A D 31 7032 7034 7055 C5' U D 32 7054 7056 7075 C5' U D 33 7074 7076 7095 C5' G D 34 7094 7096 7118 C5' A D 35 7117 7119 7140 C5' A D 36 7139 7141 7162 C5' A D 37 7161 7163 7184 C5' A D 38 7183 7185 7206 C5' U D 39 7205 7207 7226 C5' C D 40 7225 7227 7246 C5' C D 41 7245 7247 7266 C5' C D 42 7265 7267 7286 C5' C D 43 7285 7287 7306 C5' G D 44 7305 7307 7329 C5' U D 45 7328 7330 7349 C5' G D 46 7348 7350 7372 C5' U D 47 7371 7373 7392 C5' C D 48 7391 7393 7412 C5' C D 49 7411 7413 7432 C5' U D 50 7431 7433 7452 C5' U D 51 7451 7453 7472 C5' G D 52 7471 7473 7495 C5' G D 53 7494 7496 7518 C5' U D 54 7517 7519 7538 C5' U D 55 7537 7539 7558 C5' C D 56 7557 7559 7578 C5' G D 57 7577 7579 7601 C5' A D 58 7600 7602 7623 C5' U D 59 7622 7624 7643 C5' U D 60 7642 7644 7663 C5' C D 61 7662 7664 7683 C5' C D 62 7682 7684 7703 C5' G D 63 7702 7704 7726 C5' A D 64 7725 7727 7748 C5' G D 65 7747 7749 7771 C5' U D 66 7770 7772 7791 C5' C D 67 7790 7792 7811 C5' C D 68 7810 7812 7831 C5' G D 69 7830 7832 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 4823 P C C 2 distorted distorted 4808 4824 4825 4826 4843 P C C 3 distorted distorted 4831 4844 4845 4846 4863 P C C 4 distorted distorted 4851 4864 4865 4866 4883 P G C 5 distorted distorted 4871 4884 4885 4886 4906 P G C 6 distorted distorted 4891 4907 4908 4909 4929 P A C 7 distorted distorted 4914 4930 4931 4932 4951 P U C 8 distorted distorted 4937 4952 4953 4954 4971 P A C 9 distorted distorted 4959 4972 4973 4974 4993 P G C 10 distorted distorted 4979 4994 4995 4996 5016 P C C 11 distorted distorted 5001 5017 5018 5019 5036 P U C 12 distorted distorted 5024 5037 5038 5039 5056 P C C 13 distorted distorted 5044 5057 5058 5059 5076 P A C 14 distorted distorted 5064 5077 5078 5079 5098 P G C 15 distorted distorted 5084 5099 5100 5101 5121 P U C 16 distorted distorted 5106 5122 5123 5124 5141 P C C 17 distorted distorted 5129 5142 5143 5144 5161 P G C 18 distorted distorted 5149 5162 5163 5164 5184 P G C 19 distorted distorted 5169 5185 5186 5187 5207 P U C 20 distorted distorted 5192 5208 5209 5210 5227 P A C 21 distorted distorted 5215 5228 5229 5230 5249 P G C 22 distorted distorted 5235 5250 5251 5252 5272 P A C 23 distorted distorted 5257 5273 5274 5275 5294 P G C 24 distorted distorted 5280 5295 5296 5297 5317 P C C 25 distorted distorted 5302 5318 5319 5320 5337 P A C 26 distorted distorted 5325 5338 5339 5340 5359 P G C 27 distorted distorted 5345 5360 5361 5362 5382 P G C 28 distorted distorted 5367 5383 5384 5385 5405 P G C 29 distorted distorted 5390 5406 5407 5408 5428 P G C 30 distorted distorted 5413 5429 5430 5431 5451 P A C 31 distorted distorted 5436 5452 5453 5454 5473 P U C 32 distorted distorted 5459 5474 5475 5476 5493 P U C 33 distorted distorted 5481 5494 5495 5496 5513 P G C 34 distorted distorted 5501 5514 5515 5516 5536 P A C 35 distorted distorted 5521 5537 5538 5539 5558 P A C 36 distorted distorted 5544 5559 5560 5561 5580 P A C 37 distorted distorted 5566 5581 5582 5583 5602 P A C 38 distorted distorted 5588 5603 5604 5605 5624 P U C 39 distorted distorted 5610 5625 5626 5627 5644 P C C 40 distorted distorted 5632 5645 5646 5647 5664 P C C 41 distorted distorted 5652 5665 5666 5667 5684 P C C 42 distorted distorted 5672 5685 5686 5687 5704 P C C 43 distorted distorted 5692 5705 5706 5707 5724 P G C 44 distorted distorted 5712 5725 5726 5727 5747 P U C 45 distorted distorted 5732 5748 5749 5750 5767 P G C 46 distorted distorted 5755 5768 5769 5770 5790 P U C 47 distorted distorted 5775 5791 5792 5793 5810 P C C 48 distorted distorted 5798 5811 5812 5813 5830 P C C 49 distorted distorted 5818 5831 5832 5833 5850 P U C 50 distorted distorted 5838 5851 5852 5853 5870 P U C 51 distorted distorted 5858 5871 5872 5873 5890 P G C 52 distorted distorted 5878 5891 5892 5893 5913 P G C 53 distorted distorted 5898 5914 5915 5916 5936 P U C 54 distorted distorted 5921 5937 5938 5939 5956 P U C 55 distorted distorted 5944 5957 5958 5959 5976 P C C 56 distorted distorted 5964 5977 5978 5979 5996 P G C 57 distorted distorted 5984 5997 5998 5999 6019 P A C 58 distorted distorted 6004 6020 6021 6022 6041 P U C 59 distorted distorted 6027 6042 6043 6044 6061 P U C 60 distorted distorted 6049 6062 6063 6064 6081 P C C 61 distorted distorted 6069 6082 6083 6084 6101 P C C 62 distorted distorted 6089 6102 6103 6104 6121 P G C 63 distorted distorted 6109 6122 6123 6124 6144 P A C 64 distorted distorted 6129 6145 6146 6147 6166 P G C 65 distorted distorted 6152 6167 6168 6169 6189 P U C 66 distorted distorted 6174 6190 6191 6192 6209 P C C 67 distorted distorted 6197 6210 6211 6212 6229 P C C 68 distorted distorted 6217 6230 6231 6232 6249 P G C 69 distorted distorted 6237 6250 6251 6252 6272 P G C 70 distorted distorted 6257 6273 6274 6275 6295 P G C 71 distorted distorted 6280 6296 6297 6298 6318 P C C 72 distorted distorted 6303 6319 6320 6321 6338 P A C 73 distorted distorted 6326 6339 6340 6341 6360 P C C 74 distorted distorted 6346 6361 6362 6363 6401 P C D 2 distorted distorted 6386 6402 6403 6404 6421 P C D 3 distorted distorted 6409 6422 6423 6424 6441 P C D 4 distorted distorted 6429 6442 6443 6444 6461 P G D 5 distorted distorted 6449 6462 6463 6464 6484 P G D 6 distorted distorted 6469 6485 6486 6487 6507 P A D 7 distorted distorted 6492 6508 6509 6510 6529 P U D 8 distorted distorted 6515 6530 6531 6532 6549 P A D 9 distorted distorted 6537 6550 6551 6552 6571 P G D 10 distorted distorted 6557 6572 6573 6574 6594 P C D 11 distorted distorted 6579 6595 6596 6597 6614 P U D 12 distorted distorted 6602 6615 6616 6617 6634 P C D 13 distorted distorted 6622 6635 6636 6637 6654 P A D 14 distorted distorted 6642 6655 6656 6657 6676 P G D 15 distorted distorted 6662 6677 6678 6679 6699 P U D 16 distorted distorted 6684 6700 6701 6702 6719 P C D 17 distorted distorted 6707 6720 6721 6722 6739 P G D 18 distorted distorted 6727 6740 6741 6742 6762 P G D 19 distorted distorted 6747 6763 6764 6765 6785 P U D 20 distorted distorted 6770 6786 6787 6788 6805 P A D 21 distorted distorted 6793 6806 6807 6808 6827 P G D 22 distorted distorted 6813 6828 6829 6830 6850 P A D 23 distorted distorted 6835 6851 6852 6853 6872 P G D 24 distorted distorted 6858 6873 6874 6875 6895 P C D 25 distorted distorted 6880 6896 6897 6898 6915 P A D 26 distorted distorted 6903 6916 6917 6918 6937 P G D 27 distorted distorted 6923 6938 6939 6940 6960 P G D 28 distorted distorted 6945 6961 6962 6963 6983 P G D 29 distorted distorted 6968 6984 6985 6986 7006 P G D 30 distorted distorted 6991 7007 7008 7009 7029 P A D 31 distorted distorted 7014 7030 7031 7032 7051 P U D 32 distorted distorted 7037 7052 7053 7054 7071 P U D 33 distorted distorted 7059 7072 7073 7074 7091 P G D 34 distorted distorted 7079 7092 7093 7094 7114 P A D 35 distorted distorted 7099 7115 7116 7117 7136 P A D 36 distorted distorted 7122 7137 7138 7139 7158 P A D 37 distorted distorted 7144 7159 7160 7161 7180 P A D 38 distorted distorted 7166 7181 7182 7183 7202 P U D 39 distorted distorted 7188 7203 7204 7205 7222 P C D 40 distorted distorted 7210 7223 7224 7225 7242 P C D 41 distorted distorted 7230 7243 7244 7245 7262 P C D 42 distorted distorted 7250 7263 7264 7265 7282 P C D 43 distorted distorted 7270 7283 7284 7285 7302 P G D 44 distorted distorted 7290 7303 7304 7305 7325 P U D 45 distorted distorted 7310 7326 7327 7328 7345 P G D 46 distorted distorted 7333 7346 7347 7348 7368 P U D 47 distorted distorted 7353 7369 7370 7371 7388 P C D 48 distorted distorted 7376 7389 7390 7391 7408 P C D 49 distorted distorted 7396 7409 7410 7411 7428 P U D 50 distorted distorted 7416 7429 7430 7431 7448 P U D 51 distorted distorted 7436 7449 7450 7451 7468 P G D 52 distorted distorted 7456 7469 7470 7471 7491 P G D 53 distorted distorted 7476 7492 7493 7494 7514 P U D 54 distorted distorted 7499 7515 7516 7517 7534 P U D 55 distorted distorted 7522 7535 7536 7537 7554 P C D 56 distorted distorted 7542 7555 7556 7557 7574 P G D 57 distorted distorted 7562 7575 7576 7577 7597 P A D 58 distorted distorted 7582 7598 7599 7600 7619 P U D 59 distorted distorted 7605 7620 7621 7622 7639 P U D 60 distorted distorted 7627 7640 7641 7642 7659 P C D 61 distorted distorted 7647 7660 7661 7662 7679 P C D 62 distorted distorted 7667 7680 7681 7682 7699 P G D 63 distorted distorted 7687 7700 7701 7702 7722 P A D 64 distorted distorted 7707 7723 7724 7725 7744 P G D 65 distorted distorted 7730 7745 7746 7747 7767 P U D 66 distorted distorted 7752 7768 7769 7770 7787 P C D 67 distorted distorted 7775 7788 7789 7790 7807 P C D 68 distorted distorted 7795 7808 7809 7810 7827 P G D 69 distorted distorted 7815 7828 7829 7830 ---------------------------------------------------------------------------------