ID code: '2Z75' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 8 C1' DA A -1 beta 4 9 7 30 C1' G A 1 beta 25 31 28 53 C1' C A 2 beta 48 54 51 73 C1' G A 3 beta 68 74 71 96 C1' C A 4 beta 91 97 94 116 C1' C A 5 beta 111 117 114 136 C1' U A 6 131 134 148 C1' G A 7 beta 143 149 146 171 C1' G A 8 beta 166 172 169 194 C1' A A 9 beta 189 195 192 216 C1' C A 10 beta 211 217 214 236 C1' U A 11 beta 231 237 234 256 C1' U A 12 beta 251 257 254 276 C1' A A 13 beta 271 277 274 298 C1' A A 14 beta 293 299 296 320 C1' A A 15 beta 315 321 318 342 C1' G A 16 beta 337 343 340 365 C1' C A 17 beta 360 366 363 385 C1' C A 18 beta 380 386 383 405 C1' A A 19 beta 400 406 403 427 C1' U A 20 beta 422 428 425 448 C1' G B 23 beta 443 449 446 471 C1' G B 24 beta 466 472 469 494 C1' C B 25 beta 489 495 492 514 C1' U B 26 beta 509 515 512 534 C1' U B 27 beta 529 535 532 554 C1' U B 28 beta 549 555 552 574 C1' A B 29 beta 569 575 572 596 C1' A B 30 beta 591 597 594 618 C1' G B 31 beta 613 619 616 641 C1' U B 32 beta 636 642 639 661 C1' U B 33 beta 656 662 659 681 C1' G B 34 beta 676 682 679 704 C1' A B 35 beta 699 705 702 726 C1' C B 36 beta 721 727 724 746 C1' G B 37 beta 741 747 744 769 C1' A B 38 beta 764 770 767 791 C1' G B 39 beta 786 792 789 814 C1' G B 40 beta 809 815 812 837 C1' G B 41 beta 832 838 835 860 C1' C B 42 beta 855 861 858 880 C1' A B 43 beta 875 881 878 902 C1' G B 44 beta 897 903 900 925 C1' G B 45 beta 920 926 923 948 C1' G B 46 beta 943 949 946 971 C1' U B 47 beta 966 972 969 991 C1' U B 48 beta 986 992 989 1016 C1' A B 50 beta 1011 1017 1014 1038 C1' U B 51 beta 1033 1039 1036 1058 C1' C B 52 beta 1053 1059 1056 1078 C1' G B 53 beta 1073 1079 1076 1101 C1' A B 54 beta 1096 1102 1099 1123 C1' G B 55 beta 1118 1124 1121 1146 C1' A B 56 beta 1141 1147 1144 1168 C1' C B 57 beta 1163 1169 1166 1188 C1' A B 58 beta 1183 1189 1186 1210 C1' U B 59 beta 1205 1211 1208 1230 C1' C B 60 beta 1225 1231 1228 1250 C1' G B 61 beta 1245 1251 1248 1273 C1' G B 62 beta 1268 1274 1271 1296 C1' C B 63 beta 1291 1297 1294 1316 C1' G B 64 beta 1311 1317 1314 1339 C1' G B 65 beta 1334 1340 1337 1362 C1' G B 66 beta 1357 1363 1360 1385 C1' U B 67 beta 1380 1386 1383 1405 C1' G B 68 beta 1400 1406 1403 1428 C1' C B 69 beta 1423 1429 1426 1448 C1' C B 70 beta 1443 1449 1446 1468 C1' C B 71 beta 1463 1469 1466 1488 C1' U B 72 beta 1483 1489 1486 1508 C1' G B 73 beta 1503 1509 1506 1531 C1' C B 74 beta 1526 1532 1529 1551 C1' G B 75 beta 1546 1552 1549 1574 C1' G B 76 beta 1569 1575 1572 1597 C1' U B 77 beta 1592 1598 1595 1617 C1' C B 78 beta 1612 1618 1615 1637 C1' U B 79 beta 1632 1638 1635 1657 C1' U B 80 beta 1652 1658 1655 1677 C1' C B 81 beta 1672 1678 1675 1697 C1' C B 82 beta 1692 1698 1695 1717 C1' U B 83 beta 1712 1718 1715 1737 C1' G B 84 beta 1732 1738 1735 1760 C1' C B 85 beta 1755 1761 1758 1780 C1' G B 86 beta 1775 1781 1778 1803 C1' A B 87 beta 1798 1804 1801 1825 C1' C B 88 beta 1820 1826 1823 1845 C1' C B 89 beta 1840 1846 1843 1865 C1' G B 90 beta 1860 1866 1863 1888 C1' U B 91 beta 1883 1889 1886 1908 C1' U B 92 beta 1903 1909 1906 1928 C1' A B 93 beta 1923 1929 1926 1950 C1' G B 94 beta 1945 1951 1948 1973 C1' A B 95 beta 1968 1974 1971 1995 C1' G B 96 beta 1990 1996 1993 2018 C1' G B 97 beta 2013 2019 2016 2041 C1' A B 98 beta 2036 2042 2039 2063 C1' C B 99 beta 2058 2064 2061 2083 C1' U B 100 beta 2078 2084 2081 2103 C1' G B 101 beta 2098 2104 2101 2126 C1' G B 102 beta 2121 2127 2124 2149 C1' U B 103 2144 2147 2161 C1' A B 104 beta 2156 2162 2159 2183 C1' A B 105 beta 2178 2184 2181 2205 C1' A B 106 beta 2200 2206 2203 2227 C1' A B 107 beta 2222 2228 2225 2249 C1' C B 108 beta 2244 2250 2247 2269 C1' C B 109 beta 2264 2270 2267 2289 C1' A B 110 beta 2284 2290 2287 2311 C1' C B 111 beta 2306 2312 2309 2331 C1' A B 112 beta 2326 2332 2329 2353 C1' G B 113 beta 2348 2354 2351 2376 C1' G B 114 beta 2371 2377 2374 2399 C1' C B 115 beta 2394 2400 2397 2419 C1' G B 116 beta 2414 2420 2417 2442 C1' A B 117 beta 2437 2443 2440 2464 C1' C B 118 beta 2459 2465 2462 2484 C1' U B 119 beta 2479 2485 2482 2504 C1' G B 120 beta 2499 2505 2502 2527 C1' U B 121 beta 2522 2528 2525 2547 C1' G B 122 beta 2542 2548 2545 2570 C1' G B 123 beta 2565 2571 2568 2593 C1' C B 124 beta 2588 2594 2591 2613 C1' A B 125 beta 2608 2614 2611 2635 C1' U B 126 beta 2630 2636 2633 2655 C1' A B 127 beta 2650 2656 2653 2677 C1' G B 128 beta 2672 2678 2675 2700 C1' A B 129 beta 2695 2701 2698 2722 C1' G B 130 beta 2717 2723 2720 2745 C1' C B 131 beta 2740 2746 2743 2765 C1' A B 132 beta 2760 2766 2763 2787 C1' G B 133 beta 2782 2788 2785 2810 C1' U B 134 beta 2805 2811 2808 2830 C1' C B 135 beta 2825 2831 2828 2850 C1' C B 136 beta 2845 2851 2848 2870 C1' G B 137 beta 2865 2871 2868 2893 C1' G B 138 beta 2888 2894 2891 2916 C1' G B 139 beta 2911 2917 2914 2939 C1' C B 140 beta 2934 2940 2937 2959 C1' A B 141 beta 2954 2960 2957 2981 C1' G B 142 beta 2976 2982 2979 3004 C1' G B 143 beta 2999 3005 3002 3027 C1' A B 144 beta 3022 3028 3025 3049 C1' A B 145 beta 3044 3050 3047 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 7 C2' DA A -1 8 5 28 C2' G A 1 OK 30 26 29 51 C2' C A 2 OK 53 49 52 71 C2' G A 3 OK 73 69 72 94 C2' C A 4 OK 96 92 95 114 C2' C A 5 OK 116 112 115 134 C2' U A 6 OK 136 132 135 146 C2' G A 7 OK 148 144 147 169 C2' G A 8 OK 171 167 170 192 C2' A A 9 OK 194 190 193 214 C2' C A 10 OK 216 212 215 234 C2' U A 11 OK 236 232 235 254 C2' U A 12 OK 256 252 255 274 C2' A A 13 OK 276 272 275 296 C2' A A 14 OK 298 294 297 318 C2' A A 15 OK 320 316 319 340 C2' G A 16 OK 342 338 341 363 C2' C A 17 OK 365 361 364 383 C2' C A 18 OK 385 381 384 403 C2' A A 19 OK 405 401 404 425 C2' U A 20 OK 427 423 426 446 C2' G B 23 OK 448 444 447 469 C2' G B 24 OK 471 467 470 492 C2' C B 25 OK 494 490 493 512 C2' U B 26 OK 514 510 513 532 C2' U B 27 OK 534 530 533 552 C2' U B 28 OK 554 550 553 572 C2' A B 29 OK 574 570 573 594 C2' A B 30 OK 596 592 595 616 C2' G B 31 OK 618 614 617 639 C2' U B 32 OK 641 637 640 659 C2' U B 33 OK 661 657 660 679 C2' G B 34 OK 681 677 680 702 C2' A B 35 OK 704 700 703 724 C2' C B 36 OK 726 722 725 744 C2' G B 37 OK 746 742 745 767 C2' A B 38 OK 769 765 768 789 C2' G B 39 OK 791 787 790 812 C2' G B 40 OK 814 810 813 835 C2' G B 41 OK 837 833 836 858 C2' C B 42 OK 860 856 859 878 C2' A B 43 OK 880 876 879 900 C2' G B 44 OK 902 898 901 923 C2' G B 45 OK 925 921 924 946 C2' G B 46 OK 948 944 947 969 C2' U B 47 OK 971 967 970 989 C2' U B 48 OK 991 987 990 1014 C2' A B 50 OK 1016 1012 1015 1036 C2' U B 51 OK 1038 1034 1037 1056 C2' C B 52 OK 1058 1054 1057 1076 C2' G B 53 OK 1078 1074 1077 1099 C2' A B 54 OK 1101 1097 1100 1121 C2' G B 55 OK 1123 1119 1122 1144 C2' A B 56 OK 1146 1142 1145 1166 C2' C B 57 OK 1168 1164 1167 1186 C2' A B 58 OK 1188 1184 1187 1208 C2' U B 59 OK 1210 1206 1209 1228 C2' C B 60 OK 1230 1226 1229 1248 C2' G B 61 OK 1250 1246 1249 1271 C2' G B 62 OK 1273 1269 1272 1294 C2' C B 63 OK 1296 1292 1295 1314 C2' G B 64 OK 1316 1312 1315 1337 C2' G B 65 OK 1339 1335 1338 1360 C2' G B 66 OK 1362 1358 1361 1383 C2' U B 67 OK 1385 1381 1384 1403 C2' G B 68 OK 1405 1401 1404 1426 C2' C B 69 OK 1428 1424 1427 1446 C2' C B 70 OK 1448 1444 1447 1466 C2' C B 71 OK 1468 1464 1467 1486 C2' U B 72 OK 1488 1484 1487 1506 C2' G B 73 OK 1508 1504 1507 1529 C2' C B 74 OK 1531 1527 1530 1549 C2' G B 75 OK 1551 1547 1550 1572 C2' G B 76 OK 1574 1570 1573 1595 C2' U B 77 OK 1597 1593 1596 1615 C2' C B 78 OK 1617 1613 1616 1635 C2' U B 79 OK 1637 1633 1636 1655 C2' U B 80 OK 1657 1653 1656 1675 C2' C B 81 OK 1677 1673 1676 1695 C2' C B 82 OK 1697 1693 1696 1715 C2' U B 83 OK 1717 1713 1716 1735 C2' G B 84 OK 1737 1733 1736 1758 C2' C B 85 OK 1760 1756 1759 1778 C2' G B 86 OK 1780 1776 1779 1801 C2' A B 87 OK 1803 1799 1802 1823 C2' C B 88 OK 1825 1821 1824 1843 C2' C B 89 OK 1845 1841 1844 1863 C2' G B 90 OK 1865 1861 1864 1886 C2' U B 91 OK 1888 1884 1887 1906 C2' U B 92 OK 1908 1904 1907 1926 C2' A B 93 OK 1928 1924 1927 1948 C2' G B 94 OK 1950 1946 1949 1971 C2' A B 95 OK 1973 1969 1972 1993 C2' G B 96 OK 1995 1991 1994 2016 C2' G B 97 OK 2018 2014 2017 2039 C2' A B 98 OK 2041 2037 2040 2061 C2' C B 99 OK 2063 2059 2062 2081 C2' U B 100 OK 2083 2079 2082 2101 C2' G B 101 OK 2103 2099 2102 2124 C2' G B 102 OK 2126 2122 2125 2147 C2' U B 103 OK 2149 2145 2148 2159 C2' A B 104 OK 2161 2157 2160 2181 C2' A B 105 OK 2183 2179 2182 2203 C2' A B 106 OK 2205 2201 2204 2225 C2' A B 107 OK 2227 2223 2226 2247 C2' C B 108 OK 2249 2245 2248 2267 C2' C B 109 OK 2269 2265 2268 2287 C2' A B 110 OK 2289 2285 2288 2309 C2' C B 111 OK 2311 2307 2310 2329 C2' A B 112 OK 2331 2327 2330 2351 C2' G B 113 OK 2353 2349 2352 2374 C2' G B 114 OK 2376 2372 2375 2397 C2' C B 115 OK 2399 2395 2398 2417 C2' G B 116 OK 2419 2415 2418 2440 C2' A B 117 OK 2442 2438 2441 2462 C2' C B 118 OK 2464 2460 2463 2482 C2' U B 119 OK 2484 2480 2483 2502 C2' G B 120 OK 2504 2500 2503 2525 C2' U B 121 OK 2527 2523 2526 2545 C2' G B 122 OK 2547 2543 2546 2568 C2' G B 123 OK 2570 2566 2569 2591 C2' C B 124 OK 2593 2589 2592 2611 C2' A B 125 OK 2613 2609 2612 2633 C2' U B 126 OK 2635 2631 2634 2653 C2' A B 127 OK 2655 2651 2654 2675 C2' G B 128 OK 2677 2673 2676 2698 C2' A B 129 OK 2700 2696 2699 2720 C2' G B 130 OK 2722 2718 2721 2743 C2' C B 131 OK 2745 2741 2744 2763 C2' A B 132 OK 2765 2761 2764 2785 C2' G B 133 OK 2787 2783 2786 2808 C2' U B 134 OK 2810 2806 2809 2828 C2' C B 135 OK 2830 2826 2829 2848 C2' C B 136 OK 2850 2846 2849 2868 C2' G B 137 OK 2870 2866 2869 2891 C2' G B 138 OK 2893 2889 2892 2914 C2' G B 139 OK 2916 2912 2915 2937 C2' C B 140 OK 2939 2935 2938 2957 C2' A B 141 OK 2959 2955 2958 2979 C2' G B 142 OK 2981 2977 2980 3002 C2' G B 143 OK 3004 3000 3003 3025 C2' A B 144 OK 3027 3023 3026 3047 C2' A B 145 OK 3049 3045 3048 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 5 C3' DA A -1 OK 3 6 7 26 C3' G A 1 OK 24 27 28 49 C3' C A 2 OK 47 50 51 69 C3' G A 3 OK 67 70 71 92 C3' C A 4 OK 90 93 94 112 C3' C A 5 OK 110 113 114 132 C3' U A 6 OK 130 133 134 144 C3' G A 7 OK 142 145 146 167 C3' G A 8 OK 165 168 169 190 C3' A A 9 OK 188 191 192 212 C3' C A 10 OK 210 213 214 232 C3' U A 11 OK 230 233 234 252 C3' U A 12 OK 250 253 254 272 C3' A A 13 OK 270 273 274 294 C3' A A 14 OK 292 295 296 316 C3' A A 15 OK 314 317 318 338 C3' G A 16 OK 336 339 340 361 C3' C A 17 OK 359 362 363 381 C3' C A 18 OK 379 382 383 401 C3' A A 19 OK 399 402 403 423 C3' U A 20 OK 421 424 425 444 C3' G B 23 OK 442 445 446 467 C3' G B 24 OK 465 468 469 490 C3' C B 25 OK 488 491 492 510 C3' U B 26 OK 508 511 512 530 C3' U B 27 OK 528 531 532 550 C3' U B 28 OK 548 551 552 570 C3' A B 29 OK 568 571 572 592 C3' A B 30 OK 590 593 594 614 C3' G B 31 OK 612 615 616 637 C3' U B 32 OK 635 638 639 657 C3' U B 33 OK 655 658 659 677 C3' G B 34 OK 675 678 679 700 C3' A B 35 OK 698 701 702 722 C3' C B 36 OK 720 723 724 742 C3' G B 37 OK 740 743 744 765 C3' A B 38 OK 763 766 767 787 C3' G B 39 OK 785 788 789 810 C3' G B 40 OK 808 811 812 833 C3' G B 41 OK 831 834 835 856 C3' C B 42 OK 854 857 858 876 C3' A B 43 OK 874 877 878 898 C3' G B 44 OK 896 899 900 921 C3' G B 45 OK 919 922 923 944 C3' G B 46 OK 942 945 946 967 C3' U B 47 OK 965 968 969 987 C3' U B 48 OK 985 988 989 1012 C3' A B 50 OK 1010 1013 1014 1034 C3' U B 51 OK 1032 1035 1036 1054 C3' C B 52 OK 1052 1055 1056 1074 C3' G B 53 OK 1072 1075 1076 1097 C3' A B 54 OK 1095 1098 1099 1119 C3' G B 55 OK 1117 1120 1121 1142 C3' A B 56 OK 1140 1143 1144 1164 C3' C B 57 OK 1162 1165 1166 1184 C3' A B 58 OK 1182 1185 1186 1206 C3' U B 59 OK 1204 1207 1208 1226 C3' C B 60 OK 1224 1227 1228 1246 C3' G B 61 OK 1244 1247 1248 1269 C3' G B 62 OK 1267 1270 1271 1292 C3' C B 63 OK 1290 1293 1294 1312 C3' G B 64 OK 1310 1313 1314 1335 C3' G B 65 OK 1333 1336 1337 1358 C3' G B 66 OK 1356 1359 1360 1381 C3' U B 67 OK 1379 1382 1383 1401 C3' G B 68 OK 1399 1402 1403 1424 C3' C B 69 OK 1422 1425 1426 1444 C3' C B 70 OK 1442 1445 1446 1464 C3' C B 71 OK 1462 1465 1466 1484 C3' U B 72 OK 1482 1485 1486 1504 C3' G B 73 OK 1502 1505 1506 1527 C3' C B 74 OK 1525 1528 1529 1547 C3' G B 75 OK 1545 1548 1549 1570 C3' G B 76 OK 1568 1571 1572 1593 C3' U B 77 OK 1591 1594 1595 1613 C3' C B 78 OK 1611 1614 1615 1633 C3' U B 79 OK 1631 1634 1635 1653 C3' U B 80 OK 1651 1654 1655 1673 C3' C B 81 OK 1671 1674 1675 1693 C3' C B 82 OK 1691 1694 1695 1713 C3' U B 83 OK 1711 1714 1715 1733 C3' G B 84 OK 1731 1734 1735 1756 C3' C B 85 OK 1754 1757 1758 1776 C3' G B 86 OK 1774 1777 1778 1799 C3' A B 87 OK 1797 1800 1801 1821 C3' C B 88 OK 1819 1822 1823 1841 C3' C B 89 OK 1839 1842 1843 1861 C3' G B 90 OK 1859 1862 1863 1884 C3' U B 91 OK 1882 1885 1886 1904 C3' U B 92 OK 1902 1905 1906 1924 C3' A B 93 OK 1922 1925 1926 1946 C3' G B 94 OK 1944 1947 1948 1969 C3' A B 95 OK 1967 1970 1971 1991 C3' G B 96 OK 1989 1992 1993 2014 C3' G B 97 OK 2012 2015 2016 2037 C3' A B 98 OK 2035 2038 2039 2059 C3' C B 99 OK 2057 2060 2061 2079 C3' U B 100 OK 2077 2080 2081 2099 C3' G B 101 OK 2097 2100 2101 2122 C3' G B 102 OK 2120 2123 2124 2145 C3' U B 103 OK 2143 2146 2147 2157 C3' A B 104 OK 2155 2158 2159 2179 C3' A B 105 OK 2177 2180 2181 2201 C3' A B 106 OK 2199 2202 2203 2223 C3' A B 107 OK 2221 2224 2225 2245 C3' C B 108 OK 2243 2246 2247 2265 C3' C B 109 OK 2263 2266 2267 2285 C3' A B 110 OK 2283 2286 2287 2307 C3' C B 111 OK 2305 2308 2309 2327 C3' A B 112 OK 2325 2328 2329 2349 C3' G B 113 OK 2347 2350 2351 2372 C3' G B 114 OK 2370 2373 2374 2395 C3' C B 115 OK 2393 2396 2397 2415 C3' G B 116 OK 2413 2416 2417 2438 C3' A B 117 OK 2436 2439 2440 2460 C3' C B 118 OK 2458 2461 2462 2480 C3' U B 119 OK 2478 2481 2482 2500 C3' G B 120 OK 2498 2501 2502 2523 C3' U B 121 OK 2521 2524 2525 2543 C3' G B 122 OK 2541 2544 2545 2566 C3' G B 123 OK 2564 2567 2568 2589 C3' C B 124 OK 2587 2590 2591 2609 C3' A B 125 OK 2607 2610 2611 2631 C3' U B 126 OK 2629 2632 2633 2651 C3' A B 127 OK 2649 2652 2653 2673 C3' G B 128 OK 2671 2674 2675 2696 C3' A B 129 OK 2694 2697 2698 2718 C3' G B 130 OK 2716 2719 2720 2741 C3' C B 131 OK 2739 2742 2743 2761 C3' A B 132 OK 2759 2762 2763 2783 C3' G B 133 OK 2781 2784 2785 2806 C3' U B 134 OK 2804 2807 2808 2826 C3' C B 135 OK 2824 2827 2828 2846 C3' C B 136 OK 2844 2847 2848 2866 C3' G B 137 OK 2864 2867 2868 2889 C3' G B 138 OK 2887 2890 2891 2912 C3' G B 139 OK 2910 2913 2914 2935 C3' C B 140 OK 2933 2936 2937 2955 C3' A B 141 OK 2953 2956 2957 2977 C3' G B 142 OK 2975 2978 2979 3000 C3' G B 143 OK 2998 3001 3002 3023 C3' A B 144 OK 3021 3024 3025 3045 C3' A B 145 OK 3043 3046 3047 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 3 C4' DA A -1 OK 5 2 4 24 C4' G A 1 OK 26 23 25 47 C4' C A 2 OK 49 46 48 67 C4' G A 3 OK 69 66 68 90 C4' C A 4 OK 92 89 91 110 C4' C A 5 OK 112 109 111 130 C4' U A 6 OK 132 129 131 142 C4' G A 7 OK 144 141 143 165 C4' G A 8 OK 167 164 166 188 C4' A A 9 OK 190 187 189 210 C4' C A 10 OK 212 209 211 230 C4' U A 11 OK 232 229 231 250 C4' U A 12 OK 252 249 251 270 C4' A A 13 OK 272 269 271 292 C4' A A 14 OK 294 291 293 314 C4' A A 15 OK 316 313 315 336 C4' G A 16 OK 338 335 337 359 C4' C A 17 OK 361 358 360 379 C4' C A 18 OK 381 378 380 399 C4' A A 19 OK 401 398 400 421 C4' U A 20 OK 423 420 422 442 C4' G B 23 OK 444 441 443 465 C4' G B 24 OK 467 464 466 488 C4' C B 25 OK 490 487 489 508 C4' U B 26 OK 510 507 509 528 C4' U B 27 OK 530 527 529 548 C4' U B 28 OK 550 547 549 568 C4' A B 29 OK 570 567 569 590 C4' A B 30 OK 592 589 591 612 C4' G B 31 OK 614 611 613 635 C4' U B 32 OK 637 634 636 655 C4' U B 33 OK 657 654 656 675 C4' G B 34 OK 677 674 676 698 C4' A B 35 OK 700 697 699 720 C4' C B 36 OK 722 719 721 740 C4' G B 37 OK 742 739 741 763 C4' A B 38 OK 765 762 764 785 C4' G B 39 OK 787 784 786 808 C4' G B 40 OK 810 807 809 831 C4' G B 41 OK 833 830 832 854 C4' C B 42 OK 856 853 855 874 C4' A B 43 OK 876 873 875 896 C4' G B 44 OK 898 895 897 919 C4' G B 45 OK 921 918 920 942 C4' G B 46 OK 944 941 943 965 C4' U B 47 OK 967 964 966 985 C4' U B 48 OK 987 984 986 1010 C4' A B 50 OK 1012 1009 1011 1032 C4' U B 51 OK 1034 1031 1033 1052 C4' C B 52 OK 1054 1051 1053 1072 C4' G B 53 OK 1074 1071 1073 1095 C4' A B 54 OK 1097 1094 1096 1117 C4' G B 55 OK 1119 1116 1118 1140 C4' A B 56 OK 1142 1139 1141 1162 C4' C B 57 OK 1164 1161 1163 1182 C4' A B 58 OK 1184 1181 1183 1204 C4' U B 59 OK 1206 1203 1205 1224 C4' C B 60 OK 1226 1223 1225 1244 C4' G B 61 OK 1246 1243 1245 1267 C4' G B 62 OK 1269 1266 1268 1290 C4' C B 63 OK 1292 1289 1291 1310 C4' G B 64 OK 1312 1309 1311 1333 C4' G B 65 OK 1335 1332 1334 1356 C4' G B 66 OK 1358 1355 1357 1379 C4' U B 67 OK 1381 1378 1380 1399 C4' G B 68 OK 1401 1398 1400 1422 C4' C B 69 OK 1424 1421 1423 1442 C4' C B 70 OK 1444 1441 1443 1462 C4' C B 71 OK 1464 1461 1463 1482 C4' U B 72 OK 1484 1481 1483 1502 C4' G B 73 OK 1504 1501 1503 1525 C4' C B 74 OK 1527 1524 1526 1545 C4' G B 75 OK 1547 1544 1546 1568 C4' G B 76 OK 1570 1567 1569 1591 C4' U B 77 OK 1593 1590 1592 1611 C4' C B 78 OK 1613 1610 1612 1631 C4' U B 79 OK 1633 1630 1632 1651 C4' U B 80 OK 1653 1650 1652 1671 C4' C B 81 OK 1673 1670 1672 1691 C4' C B 82 OK 1693 1690 1692 1711 C4' U B 83 OK 1713 1710 1712 1731 C4' G B 84 OK 1733 1730 1732 1754 C4' C B 85 OK 1756 1753 1755 1774 C4' G B 86 OK 1776 1773 1775 1797 C4' A B 87 OK 1799 1796 1798 1819 C4' C B 88 OK 1821 1818 1820 1839 C4' C B 89 OK 1841 1838 1840 1859 C4' G B 90 OK 1861 1858 1860 1882 C4' U B 91 OK 1884 1881 1883 1902 C4' U B 92 OK 1904 1901 1903 1922 C4' A B 93 OK 1924 1921 1923 1944 C4' G B 94 OK 1946 1943 1945 1967 C4' A B 95 OK 1969 1966 1968 1989 C4' G B 96 OK 1991 1988 1990 2012 C4' G B 97 OK 2014 2011 2013 2035 C4' A B 98 OK 2037 2034 2036 2057 C4' C B 99 OK 2059 2056 2058 2077 C4' U B 100 OK 2079 2076 2078 2097 C4' G B 101 OK 2099 2096 2098 2120 C4' G B 102 OK 2122 2119 2121 2143 C4' U B 103 OK 2145 2142 2144 2155 C4' A B 104 OK 2157 2154 2156 2177 C4' A B 105 OK 2179 2176 2178 2199 C4' A B 106 OK 2201 2198 2200 2221 C4' A B 107 OK 2223 2220 2222 2243 C4' C B 108 OK 2245 2242 2244 2263 C4' C B 109 OK 2265 2262 2264 2283 C4' A B 110 OK 2285 2282 2284 2305 C4' C B 111 OK 2307 2304 2306 2325 C4' A B 112 OK 2327 2324 2326 2347 C4' G B 113 OK 2349 2346 2348 2370 C4' G B 114 OK 2372 2369 2371 2393 C4' C B 115 OK 2395 2392 2394 2413 C4' G B 116 OK 2415 2412 2414 2436 C4' A B 117 OK 2438 2435 2437 2458 C4' C B 118 OK 2460 2457 2459 2478 C4' U B 119 OK 2480 2477 2479 2498 C4' G B 120 OK 2500 2497 2499 2521 C4' U B 121 OK 2523 2520 2522 2541 C4' G B 122 OK 2543 2540 2542 2564 C4' G B 123 OK 2566 2563 2565 2587 C4' C B 124 OK 2589 2586 2588 2607 C4' A B 125 OK 2609 2606 2608 2629 C4' U B 126 OK 2631 2628 2630 2649 C4' A B 127 OK 2651 2648 2650 2671 C4' G B 128 OK 2673 2670 2672 2694 C4' A B 129 OK 2696 2693 2695 2716 C4' G B 130 OK 2718 2715 2717 2739 C4' C B 131 OK 2741 2738 2740 2759 C4' A B 132 OK 2761 2758 2760 2781 C4' G B 133 OK 2783 2780 2782 2804 C4' U B 134 OK 2806 2803 2805 2824 C4' C B 135 OK 2826 2823 2825 2844 C4' C B 136 OK 2846 2843 2845 2864 C4' G B 137 OK 2866 2863 2865 2887 C4' G B 138 OK 2889 2886 2888 2910 C4' G B 139 OK 2912 2909 2911 2933 C4' C B 140 OK 2935 2932 2934 2953 C4' A B 141 OK 2955 2952 2954 2975 C4' G B 142 OK 2977 2974 2976 2998 C4' G B 143 OK 3000 2997 2999 3021 C4' A B 144 OK 3023 3020 3022 3043 C4' A B 145 OK 3045 3042 3044 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 2 C5' DA A -1 1 3 23 C5' G A 1 22 24 46 C5' C A 2 45 47 66 C5' G A 3 65 67 89 C5' C A 4 88 90 109 C5' C A 5 108 110 129 C5' U A 6 128 130 141 C5' G A 7 140 142 164 C5' G A 8 163 165 187 C5' A A 9 186 188 209 C5' C A 10 208 210 229 C5' U A 11 228 230 249 C5' U A 12 248 250 269 C5' A A 13 268 270 291 C5' A A 14 290 292 313 C5' A A 15 312 314 335 C5' G A 16 334 336 358 C5' C A 17 357 359 378 C5' C A 18 377 379 398 C5' A A 19 397 399 420 C5' U A 20 419 421 441 C5' G B 23 440 442 464 C5' G B 24 463 465 487 C5' C B 25 486 488 507 C5' U B 26 506 508 527 C5' U B 27 526 528 547 C5' U B 28 546 548 567 C5' A B 29 566 568 589 C5' A B 30 588 590 611 C5' G B 31 610 612 634 C5' U B 32 633 635 654 C5' U B 33 653 655 674 C5' G B 34 673 675 697 C5' A B 35 696 698 719 C5' C B 36 718 720 739 C5' G B 37 738 740 762 C5' A B 38 761 763 784 C5' G B 39 783 785 807 C5' G B 40 806 808 830 C5' G B 41 829 831 853 C5' C B 42 852 854 873 C5' A B 43 872 874 895 C5' G B 44 894 896 918 C5' G B 45 917 919 941 C5' G B 46 940 942 964 C5' U B 47 963 965 984 C5' U B 48 983 985 1009 C5' A B 50 1008 1010 1031 C5' U B 51 1030 1032 1051 C5' C B 52 1050 1052 1071 C5' G B 53 1070 1072 1094 C5' A B 54 1093 1095 1116 C5' G B 55 1115 1117 1139 C5' A B 56 1138 1140 1161 C5' C B 57 1160 1162 1181 C5' A B 58 1180 1182 1203 C5' U B 59 1202 1204 1223 C5' C B 60 1222 1224 1243 C5' G B 61 1242 1244 1266 C5' G B 62 1265 1267 1289 C5' C B 63 1288 1290 1309 C5' G B 64 1308 1310 1332 C5' G B 65 1331 1333 1355 C5' G B 66 1354 1356 1378 C5' U B 67 1377 1379 1398 C5' G B 68 1397 1399 1421 C5' C B 69 1420 1422 1441 C5' C B 70 1440 1442 1461 C5' C B 71 1460 1462 1481 C5' U B 72 1480 1482 1501 C5' G B 73 1500 1502 1524 C5' C B 74 1523 1525 1544 C5' G B 75 1543 1545 1567 C5' G B 76 1566 1568 1590 C5' U B 77 1589 1591 1610 C5' C B 78 1609 1611 1630 C5' U B 79 1629 1631 1650 C5' U B 80 1649 1651 1670 C5' C B 81 1669 1671 1690 C5' C B 82 1689 1691 1710 C5' U B 83 1709 1711 1730 C5' G B 84 1729 1731 1753 C5' C B 85 1752 1754 1773 C5' G B 86 1772 1774 1796 C5' A B 87 1795 1797 1818 C5' C B 88 1817 1819 1838 C5' C B 89 1837 1839 1858 C5' G B 90 1857 1859 1881 C5' U B 91 1880 1882 1901 C5' U B 92 1900 1902 1921 C5' A B 93 1920 1922 1943 C5' G B 94 1942 1944 1966 C5' A B 95 1965 1967 1988 C5' G B 96 1987 1989 2011 C5' G B 97 2010 2012 2034 C5' A B 98 2033 2035 2056 C5' C B 99 2055 2057 2076 C5' U B 100 2075 2077 2096 C5' G B 101 2095 2097 2119 C5' G B 102 2118 2120 2142 C5' U B 103 2141 2143 2154 C5' A B 104 2153 2155 2176 C5' A B 105 2175 2177 2198 C5' A B 106 2197 2199 2220 C5' A B 107 2219 2221 2242 C5' C B 108 2241 2243 2262 C5' C B 109 2261 2263 2282 C5' A B 110 2281 2283 2304 C5' C B 111 2303 2305 2324 C5' A B 112 2323 2325 2346 C5' G B 113 2345 2347 2369 C5' G B 114 2368 2370 2392 C5' C B 115 2391 2393 2412 C5' G B 116 2411 2413 2435 C5' A B 117 2434 2436 2457 C5' C B 118 2456 2458 2477 C5' U B 119 2476 2478 2497 C5' G B 120 2496 2498 2520 C5' U B 121 2519 2521 2540 C5' G B 122 2539 2541 2563 C5' G B 123 2562 2564 2586 C5' C B 124 2585 2587 2606 C5' A B 125 2605 2607 2628 C5' U B 126 2627 2629 2648 C5' A B 127 2647 2649 2670 C5' G B 128 2669 2671 2693 C5' A B 129 2692 2694 2715 C5' G B 130 2714 2716 2738 C5' C B 131 2737 2739 2758 C5' A B 132 2757 2759 2780 C5' G B 133 2779 2781 2803 C5' U B 134 2802 2804 2823 C5' C B 135 2822 2824 2843 C5' C B 136 2842 2844 2863 C5' G B 137 2862 2864 2886 C5' G B 138 2885 2887 2909 C5' G B 139 2908 2910 2932 C5' C B 140 2931 2933 2952 C5' A B 141 2951 2953 2974 C5' G B 142 2973 2975 2997 C5' G B 143 2996 2998 3020 C5' A B 144 3019 3021 3042 C5' A B 145 3041 3043 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 19 P G A 1 distorted distorted 6 20 21 22 42 P C A 2 distorted distorted 27 43 44 45 62 P G A 3 distorted distorted 50 63 64 65 85 P C A 4 distorted distorted 70 86 87 88 105 P C A 5 distorted distorted 93 106 107 108 125 P U A 6 distorted distorted 113 126 127 128 137 P G A 7 distorted distorted 133 138 139 140 160 P G A 8 distorted distorted 145 161 162 163 183 P A A 9 distorted distorted 168 184 185 186 205 P C A 10 distorted distorted 191 206 207 208 225 P U A 11 distorted distorted 213 226 227 228 245 P U A 12 distorted distorted 233 246 247 248 265 P A A 13 distorted distorted 253 266 267 268 287 P A A 14 distorted distorted 273 288 289 290 309 P A A 15 distorted distorted 295 310 311 312 331 P G A 16 distorted distorted 317 332 333 334 354 P C A 17 distorted distorted 339 355 356 357 374 P C A 18 distorted distorted 362 375 376 377 394 P A A 19 distorted distorted 382 395 396 397 416 P U A 20 distorted distorted 402 417 418 419 437 P G B 23 distorted distorted 438 439 440 460 P G B 24 distorted distorted 445 461 462 463 483 P C B 25 distorted distorted 468 484 485 486 503 P U B 26 distorted distorted 491 504 505 506 523 P U B 27 distorted distorted 511 524 525 526 543 P U B 28 distorted distorted 531 544 545 546 563 P A B 29 distorted distorted 551 564 565 566 585 P A B 30 distorted distorted 571 586 587 588 607 P G B 31 distorted distorted 593 608 609 610 630 P U B 32 distorted distorted 615 631 632 633 650 P U B 33 distorted distorted 638 651 652 653 670 P G B 34 distorted distorted 658 671 672 673 693 P A B 35 distorted distorted 678 694 695 696 715 P C B 36 distorted distorted 701 716 717 718 735 P G B 37 distorted distorted 723 736 737 738 758 P A B 38 distorted distorted 743 759 760 761 780 P G B 39 distorted distorted 766 781 782 783 803 P G B 40 distorted distorted 788 804 805 806 826 P G B 41 distorted distorted 811 827 828 829 849 P C B 42 distorted distorted 834 850 851 852 869 P A B 43 distorted distorted 857 870 871 872 891 P G B 44 distorted distorted 877 892 893 894 914 P G B 45 distorted distorted 899 915 916 917 937 P G B 46 distorted distorted 922 938 939 940 960 P U B 47 distorted distorted 945 961 962 963 980 P U B 48 distorted distorted 968 981 982 983 1000 P U B 49 distorted distorted 988 1001 1002 1003 1005 P A B 50 distorted distorted 1004 1006 1007 1008 1027 P U B 51 distorted distorted 1013 1028 1029 1030 1047 P C B 52 distorted distorted 1035 1048 1049 1050 1067 P G B 53 distorted distorted 1055 1068 1069 1070 1090 P A B 54 distorted distorted 1075 1091 1092 1093 1112 P G B 55 distorted distorted 1098 1113 1114 1115 1135 P A B 56 distorted distorted 1120 1136 1137 1138 1157 P C B 57 distorted distorted 1143 1158 1159 1160 1177 P A B 58 distorted distorted 1165 1178 1179 1180 1199 P U B 59 distorted distorted 1185 1200 1201 1202 1219 P C B 60 distorted distorted 1207 1220 1221 1222 1239 P G B 61 distorted distorted 1227 1240 1241 1242 1262 P G B 62 distorted distorted 1247 1263 1264 1265 1285 P C B 63 distorted distorted 1270 1286 1287 1288 1305 P G B 64 distorted distorted 1293 1306 1307 1308 1328 P G B 65 distorted distorted 1313 1329 1330 1331 1351 P G B 66 distorted distorted 1336 1352 1353 1354 1374 P U B 67 distorted distorted 1359 1375 1376 1377 1394 P G B 68 distorted distorted 1382 1395 1396 1397 1417 P C B 69 distorted distorted 1402 1418 1419 1420 1437 P C B 70 distorted distorted 1425 1438 1439 1440 1457 P C B 71 distorted distorted 1445 1458 1459 1460 1477 P U B 72 distorted distorted 1465 1478 1479 1480 1497 P G B 73 distorted distorted 1485 1498 1499 1500 1520 P C B 74 distorted distorted 1505 1521 1522 1523 1540 P G B 75 distorted distorted 1528 1541 1542 1543 1563 P G B 76 distorted distorted 1548 1564 1565 1566 1586 P U B 77 distorted distorted 1571 1587 1588 1589 1606 P C B 78 distorted distorted 1594 1607 1608 1609 1626 P U B 79 distorted distorted 1614 1627 1628 1629 1646 P U B 80 distorted distorted 1634 1647 1648 1649 1666 P C B 81 distorted distorted 1654 1667 1668 1669 1686 P C B 82 distorted distorted 1674 1687 1688 1689 1706 P U B 83 distorted distorted 1694 1707 1708 1709 1726 P G B 84 distorted distorted 1714 1727 1728 1729 1749 P C B 85 distorted distorted 1734 1750 1751 1752 1769 P G B 86 distorted distorted 1757 1770 1771 1772 1792 P A B 87 distorted distorted 1777 1793 1794 1795 1814 P C B 88 distorted distorted 1800 1815 1816 1817 1834 P C B 89 distorted distorted 1822 1835 1836 1837 1854 P G B 90 distorted distorted 1842 1855 1856 1857 1877 P U B 91 distorted distorted 1862 1878 1879 1880 1897 P U B 92 distorted distorted 1885 1898 1899 1900 1917 P A B 93 distorted distorted 1905 1918 1919 1920 1939 P G B 94 distorted distorted 1925 1940 1941 1942 1962 P A B 95 distorted distorted 1947 1963 1964 1965 1984 P G B 96 distorted distorted 1970 1985 1986 1987 2007 P G B 97 distorted distorted 1992 2008 2009 2010 2030 P A B 98 distorted distorted 2015 2031 2032 2033 2052 P C B 99 distorted distorted 2038 2053 2054 2055 2072 P U B 100 distorted distorted 2060 2073 2074 2075 2092 P G B 101 distorted distorted 2080 2093 2094 2095 2115 P G B 102 distorted distorted 2100 2116 2117 2118 2138 P U B 103 distorted distorted 2123 2139 2140 2141 2150 P A B 104 distorted distorted 2146 2151 2152 2153 2172 P A B 105 distorted distorted 2158 2173 2174 2175 2194 P A B 106 distorted distorted 2180 2195 2196 2197 2216 P A B 107 distorted distorted 2202 2217 2218 2219 2238 P C B 108 distorted distorted 2224 2239 2240 2241 2258 P C B 109 distorted distorted 2246 2259 2260 2261 2278 P A B 110 distorted distorted 2266 2279 2280 2281 2300 P C B 111 distorted distorted 2286 2301 2302 2303 2320 P A B 112 distorted distorted 2308 2321 2322 2323 2342 P G B 113 distorted distorted 2328 2343 2344 2345 2365 P G B 114 distorted distorted 2350 2366 2367 2368 2388 P C B 115 distorted distorted 2373 2389 2390 2391 2408 P G B 116 distorted distorted 2396 2409 2410 2411 2431 P A B 117 distorted distorted 2416 2432 2433 2434 2453 P C B 118 distorted distorted 2439 2454 2455 2456 2473 P U B 119 distorted distorted 2461 2474 2475 2476 2493 P G B 120 distorted distorted 2481 2494 2495 2496 2516 P U B 121 distorted distorted 2501 2517 2518 2519 2536 P G B 122 distorted distorted 2524 2537 2538 2539 2559 P G B 123 distorted distorted 2544 2560 2561 2562 2582 P C B 124 distorted distorted 2567 2583 2584 2585 2602 P A B 125 distorted distorted 2590 2603 2604 2605 2624 P U B 126 distorted distorted 2610 2625 2626 2627 2644 P A B 127 distorted distorted 2632 2645 2646 2647 2666 P G B 128 distorted distorted 2652 2667 2668 2669 2689 P A B 129 distorted distorted 2674 2690 2691 2692 2711 P G B 130 distorted distorted 2697 2712 2713 2714 2734 P C B 131 distorted distorted 2719 2735 2736 2737 2754 P A B 132 distorted distorted 2742 2755 2756 2757 2776 P G B 133 distorted distorted 2762 2777 2778 2779 2799 P U B 134 distorted distorted 2784 2800 2801 2802 2819 P C B 135 distorted distorted 2807 2820 2821 2822 2839 P C B 136 distorted distorted 2827 2840 2841 2842 2859 P G B 137 distorted distorted 2847 2860 2861 2862 2882 P G B 138 distorted distorted 2867 2883 2884 2885 2905 P G B 139 distorted distorted 2890 2906 2907 2908 2928 P C B 140 distorted distorted 2913 2929 2930 2931 2948 P A B 141 distorted distorted 2936 2949 2950 2951 2970 P G B 142 distorted distorted 2956 2971 2972 2973 2993 P G B 143 distorted distorted 2978 2994 2995 2996 3016 P A B 144 distorted distorted 3001 3017 3018 3019 3038 P A B 145 distorted distorted 3024 3039 3040 3041 3073 P GLP A 201 3074 3075 ---------------------------------------------------------------------------------